Multiple sequence alignment - TraesCS6D01G124200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G124200 chr6D 100.000 3461 0 0 1 3461 89005222 89001762 0.000000e+00 6392.0
1 TraesCS6D01G124200 chr6D 77.415 1346 250 40 1000 2324 88884975 88883663 0.000000e+00 752.0
2 TraesCS6D01G124200 chr6D 96.512 172 6 0 3128 3299 88894633 88894462 5.650000e-73 285.0
3 TraesCS6D01G124200 chr6D 95.706 163 5 2 3300 3461 82557172 82557011 9.530000e-66 261.0
4 TraesCS6D01G124200 chr6D 92.500 40 3 0 283 322 89004911 89004872 1.340000e-04 58.4
5 TraesCS6D01G124200 chr6D 92.500 40 3 0 312 351 89004940 89004901 1.340000e-04 58.4
6 TraesCS6D01G124200 chr6A 94.070 2597 92 26 558 3128 107113837 107111277 0.000000e+00 3886.0
7 TraesCS6D01G124200 chr6A 95.882 170 7 0 3128 3297 14231628 14231459 3.400000e-70 276.0
8 TraesCS6D01G124200 chr6A 81.452 248 19 9 3 227 107115065 107114822 9.870000e-41 178.0
9 TraesCS6D01G124200 chr6B 92.297 2168 101 26 460 2596 169319082 169316950 0.000000e+00 3018.0
10 TraesCS6D01G124200 chr6B 80.590 814 138 14 1000 1804 169231100 169230298 8.210000e-171 610.0
11 TraesCS6D01G124200 chr6B 92.290 428 24 5 2663 3089 169316948 169316529 1.780000e-167 599.0
12 TraesCS6D01G124200 chr6B 89.952 209 16 4 25 232 169319519 169319315 7.370000e-67 265.0
13 TraesCS6D01G124200 chr7D 95.930 172 7 0 3128 3299 602687568 602687739 2.630000e-71 279.0
14 TraesCS6D01G124200 chr7D 95.882 170 7 0 3128 3297 101809265 101809434 3.400000e-70 276.0
15 TraesCS6D01G124200 chr7D 96.951 164 2 3 3300 3461 306879102 306878940 4.400000e-69 272.0
16 TraesCS6D01G124200 chr7D 96.933 163 4 1 3300 3461 555014847 555015009 4.400000e-69 272.0
17 TraesCS6D01G124200 chr7D 96.319 163 4 2 3300 3461 254140753 254140592 2.050000e-67 267.0
18 TraesCS6D01G124200 chr2B 95.906 171 7 0 3127 3297 796576288 796576458 9.460000e-71 278.0
19 TraesCS6D01G124200 chr2B 93.923 181 8 3 3118 3296 36328959 36329138 1.580000e-68 270.0
20 TraesCS6D01G124200 chr1D 97.531 162 4 0 3300 3461 125852436 125852597 9.460000e-71 278.0
21 TraesCS6D01G124200 chr1D 97.531 162 3 1 3300 3461 10445233 10445393 3.400000e-70 276.0
22 TraesCS6D01G124200 chr1D 96.951 164 2 2 3300 3461 240741811 240741649 4.400000e-69 272.0
23 TraesCS6D01G124200 chr2D 95.376 173 8 0 3127 3299 489576365 489576193 3.400000e-70 276.0
24 TraesCS6D01G124200 chr2D 95.882 170 7 0 3128 3297 628636476 628636307 3.400000e-70 276.0
25 TraesCS6D01G124200 chr2D 95.732 164 5 1 3300 3461 545770480 545770643 2.650000e-66 263.0
26 TraesCS6D01G124200 chrUn 95.349 172 8 0 3128 3299 29217008 29216837 1.220000e-69 274.0
27 TraesCS6D01G124200 chr4D 96.951 164 3 2 3299 3461 459668597 459668435 1.220000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G124200 chr6D 89001762 89005222 3460 True 2169.6 6392 95.000 1 3461 3 chr6D.!!$R4 3460
1 TraesCS6D01G124200 chr6D 88883663 88884975 1312 True 752.0 752 77.415 1000 2324 1 chr6D.!!$R2 1324
2 TraesCS6D01G124200 chr6A 107111277 107115065 3788 True 2032.0 3886 87.761 3 3128 2 chr6A.!!$R2 3125
3 TraesCS6D01G124200 chr6B 169316529 169319519 2990 True 1294.0 3018 91.513 25 3089 3 chr6B.!!$R2 3064
4 TraesCS6D01G124200 chr6B 169230298 169231100 802 True 610.0 610 80.590 1000 1804 1 chr6B.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 291 0.106868 GGGGAGGGAATTTGGTACCG 60.107 60.0 7.57 0.00 0.0 4.02 F
489 581 0.179045 CCCTTTGGCTGGTAGGATCG 60.179 60.0 0.00 0.00 0.0 3.69 F
1332 2102 0.250234 AGTTAAGCGAGGATGCTGCA 59.750 50.0 4.13 4.13 46.6 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 2719 0.955428 TTGTGAGGCTTGATGACGCC 60.955 55.000 0.00 0.00 46.65 5.68 R
2380 3188 1.154016 GTGATTGCTGCTGCTGCTG 60.154 57.895 27.67 16.73 40.48 4.41 R
3208 4058 0.250901 ACCTCTTGCCTTGCACGAAT 60.251 50.000 0.00 0.00 38.71 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 71 1.630878 CCTCCACCAGGTAAAGCTTCT 59.369 52.381 0.00 0.00 37.53 2.85
145 169 3.626670 GCTTCTCGACCTAGTAGTGCTTA 59.373 47.826 0.00 0.00 0.00 3.09
161 185 8.202137 AGTAGTGCTTATCGCCTTTTTATCTTA 58.798 33.333 0.00 0.00 38.05 2.10
163 187 8.451908 AGTGCTTATCGCCTTTTTATCTTATT 57.548 30.769 0.00 0.00 38.05 1.40
164 188 9.555727 AGTGCTTATCGCCTTTTTATCTTATTA 57.444 29.630 0.00 0.00 38.05 0.98
167 191 9.989869 GCTTATCGCCTTTTTATCTTATTATCC 57.010 33.333 0.00 0.00 0.00 2.59
169 193 7.611213 ATCGCCTTTTTATCTTATTATCCCG 57.389 36.000 0.00 0.00 0.00 5.14
170 194 5.935789 TCGCCTTTTTATCTTATTATCCCGG 59.064 40.000 0.00 0.00 0.00 5.73
171 195 5.391629 CGCCTTTTTATCTTATTATCCCGGC 60.392 44.000 0.00 0.00 0.00 6.13
172 196 5.105877 GCCTTTTTATCTTATTATCCCGGCC 60.106 44.000 0.00 0.00 0.00 6.13
191 215 1.449778 GTTTCCTGGCCGGCTAGTC 60.450 63.158 34.32 19.21 0.00 2.59
192 216 2.666098 TTTCCTGGCCGGCTAGTCC 61.666 63.158 34.32 15.58 0.00 3.85
220 244 0.325272 GCGGAGGATAGGGGGATTTC 59.675 60.000 0.00 0.00 0.00 2.17
228 252 0.108585 TAGGGGGATTTCGCTGATGC 59.891 55.000 0.00 0.00 0.00 3.91
260 284 1.609783 CGCAGAGGGGAGGGAATTT 59.390 57.895 0.00 0.00 0.00 1.82
264 288 2.205342 CAGAGGGGAGGGAATTTGGTA 58.795 52.381 0.00 0.00 0.00 3.25
266 290 1.214673 GAGGGGAGGGAATTTGGTACC 59.785 57.143 4.43 4.43 0.00 3.34
267 291 0.106868 GGGGAGGGAATTTGGTACCG 60.107 60.000 7.57 0.00 0.00 4.02
277 349 2.467566 TTTGGTACCGGAAGAAGCTC 57.532 50.000 9.46 0.00 0.00 4.09
281 353 1.207329 GGTACCGGAAGAAGCTCATGT 59.793 52.381 9.46 0.00 0.00 3.21
282 354 2.429610 GGTACCGGAAGAAGCTCATGTA 59.570 50.000 9.46 0.00 0.00 2.29
296 368 9.678260 AGAAGCTCATGTATAGATTCTTTGTTT 57.322 29.630 7.40 0.00 44.95 2.83
299 371 8.186821 AGCTCATGTATAGATTCTTTGTTTTGC 58.813 33.333 0.00 0.00 0.00 3.68
300 372 8.186821 GCTCATGTATAGATTCTTTGTTTTGCT 58.813 33.333 0.00 0.00 0.00 3.91
347 419 9.699703 TGTTTTGCTATTATTTTGGGTAAACTC 57.300 29.630 0.00 0.00 0.00 3.01
365 437 8.267367 GGTAAACTCTTTATAGAAAATCGAGCG 58.733 37.037 0.00 0.00 0.00 5.03
397 477 1.089112 CAAGCATCAGACCGATTGCA 58.911 50.000 0.00 0.00 33.28 4.08
401 481 0.376152 CATCAGACCGATTGCAGTGC 59.624 55.000 8.58 8.58 29.21 4.40
402 482 0.251354 ATCAGACCGATTGCAGTGCT 59.749 50.000 17.60 0.00 0.00 4.40
403 483 0.390340 TCAGACCGATTGCAGTGCTC 60.390 55.000 17.60 5.43 0.00 4.26
419 499 2.754658 TCTCGACCTTCTCGGGGC 60.755 66.667 0.00 0.00 43.80 5.80
430 510 1.481871 TCTCGGGGCGTCTAATTTCT 58.518 50.000 0.00 0.00 0.00 2.52
431 511 1.407979 TCTCGGGGCGTCTAATTTCTC 59.592 52.381 0.00 0.00 0.00 2.87
434 514 1.404986 CGGGGCGTCTAATTTCTCACA 60.405 52.381 0.00 0.00 0.00 3.58
436 516 3.279434 GGGGCGTCTAATTTCTCACAAT 58.721 45.455 0.00 0.00 0.00 2.71
437 517 4.448210 GGGGCGTCTAATTTCTCACAATA 58.552 43.478 0.00 0.00 0.00 1.90
438 518 4.511826 GGGGCGTCTAATTTCTCACAATAG 59.488 45.833 0.00 0.00 0.00 1.73
439 519 5.116882 GGGCGTCTAATTTCTCACAATAGT 58.883 41.667 0.00 0.00 0.00 2.12
440 520 6.278363 GGGCGTCTAATTTCTCACAATAGTA 58.722 40.000 0.00 0.00 0.00 1.82
442 522 7.441458 GGGCGTCTAATTTCTCACAATAGTATT 59.559 37.037 0.00 0.00 0.00 1.89
443 523 9.472361 GGCGTCTAATTTCTCACAATAGTATTA 57.528 33.333 0.00 0.00 0.00 0.98
455 535 9.209175 CTCACAATAGTATTAGTTGGGATTAGC 57.791 37.037 0.00 0.00 35.00 3.09
456 536 8.154856 TCACAATAGTATTAGTTGGGATTAGCC 58.845 37.037 0.00 0.00 30.82 3.93
458 538 8.376270 ACAATAGTATTAGTTGGGATTAGCCTC 58.624 37.037 0.00 0.00 36.66 4.70
471 563 0.255890 TAGCCTCCCATTTCAGTGCC 59.744 55.000 0.00 0.00 0.00 5.01
472 564 2.054453 GCCTCCCATTTCAGTGCCC 61.054 63.158 0.00 0.00 0.00 5.36
488 580 3.808984 CCCTTTGGCTGGTAGGATC 57.191 57.895 0.00 0.00 0.00 3.36
489 581 0.179045 CCCTTTGGCTGGTAGGATCG 60.179 60.000 0.00 0.00 0.00 3.69
493 585 1.568504 TTGGCTGGTAGGATCGAGTT 58.431 50.000 0.00 0.00 0.00 3.01
496 588 2.093658 TGGCTGGTAGGATCGAGTTTTC 60.094 50.000 0.00 0.00 0.00 2.29
499 591 3.866327 GCTGGTAGGATCGAGTTTTCTTC 59.134 47.826 0.00 0.00 0.00 2.87
501 593 5.725362 CTGGTAGGATCGAGTTTTCTTCTT 58.275 41.667 0.00 0.00 0.00 2.52
506 598 3.935828 GGATCGAGTTTTCTTCTTCCCAG 59.064 47.826 0.00 0.00 0.00 4.45
511 603 7.235935 TCGAGTTTTCTTCTTCCCAGTAATA 57.764 36.000 0.00 0.00 0.00 0.98
519 611 8.497910 TTCTTCTTCCCAGTAATAGCAGATAT 57.502 34.615 0.00 0.00 0.00 1.63
523 970 5.667539 TCCCAGTAATAGCAGATATGCTC 57.332 43.478 19.91 4.21 45.00 4.26
525 972 5.782331 TCCCAGTAATAGCAGATATGCTCTT 59.218 40.000 19.91 17.59 45.00 2.85
533 980 4.140536 AGCAGATATGCTCTTTTTAGGCC 58.859 43.478 9.54 0.00 42.12 5.19
536 983 5.506982 GCAGATATGCTCTTTTTAGGCCAAG 60.507 44.000 5.01 0.00 29.16 3.61
541 988 3.500680 TGCTCTTTTTAGGCCAAGTAACG 59.499 43.478 5.01 0.00 0.00 3.18
544 991 5.226194 TCTTTTTAGGCCAAGTAACGGTA 57.774 39.130 5.01 0.00 0.00 4.02
546 993 4.888326 TTTTAGGCCAAGTAACGGTAGA 57.112 40.909 5.01 0.00 0.00 2.59
549 996 2.185387 AGGCCAAGTAACGGTAGATGT 58.815 47.619 5.01 0.00 0.00 3.06
552 999 4.117685 GGCCAAGTAACGGTAGATGTTAG 58.882 47.826 0.00 0.00 32.79 2.34
554 1001 4.117685 CCAAGTAACGGTAGATGTTAGGC 58.882 47.826 0.00 0.00 32.79 3.93
556 1003 4.650754 AGTAACGGTAGATGTTAGGCAG 57.349 45.455 0.00 0.00 32.79 4.85
591 1334 5.069119 TCACGATGAGATAGGCAATACAGTT 59.931 40.000 0.00 0.00 0.00 3.16
592 1335 5.755375 CACGATGAGATAGGCAATACAGTTT 59.245 40.000 0.00 0.00 0.00 2.66
594 1337 5.985530 CGATGAGATAGGCAATACAGTTTCA 59.014 40.000 0.00 0.00 0.00 2.69
598 1341 6.763135 TGAGATAGGCAATACAGTTTCATGAC 59.237 38.462 0.00 0.00 0.00 3.06
602 1345 5.316167 AGGCAATACAGTTTCATGACAGAA 58.684 37.500 0.00 0.00 0.00 3.02
612 1355 6.039047 CAGTTTCATGACAGAATTATCCTGGG 59.961 42.308 0.00 0.00 36.03 4.45
620 1363 7.010160 TGACAGAATTATCCTGGGTTTTCTTT 58.990 34.615 2.95 0.00 36.03 2.52
622 1365 8.950007 ACAGAATTATCCTGGGTTTTCTTTAA 57.050 30.769 2.95 0.00 36.03 1.52
623 1366 9.374711 ACAGAATTATCCTGGGTTTTCTTTAAA 57.625 29.630 2.95 0.00 36.03 1.52
649 1401 7.961326 AAAATCCCAGACTTAATATGCTTGT 57.039 32.000 0.00 0.00 0.00 3.16
650 1402 9.474313 AAAAATCCCAGACTTAATATGCTTGTA 57.526 29.630 0.00 0.00 0.00 2.41
653 1405 7.907841 TCCCAGACTTAATATGCTTGTAGTA 57.092 36.000 0.00 0.00 0.00 1.82
671 1423 8.439993 TTGTAGTACATTTGTAGCAACTTGAA 57.560 30.769 3.28 0.00 0.00 2.69
682 1434 2.771372 AGCAACTTGAACCCCATTTGTT 59.229 40.909 0.00 0.00 0.00 2.83
691 1443 7.831690 ACTTGAACCCCATTTGTTTTACATTTT 59.168 29.630 0.00 0.00 0.00 1.82
699 1451 7.605691 CCCATTTGTTTTACATTTTGCTCCATA 59.394 33.333 0.00 0.00 0.00 2.74
700 1452 9.165035 CCATTTGTTTTACATTTTGCTCCATAT 57.835 29.630 0.00 0.00 0.00 1.78
789 1542 1.140052 TGGAAAAGTCGAAGTGCTCCA 59.860 47.619 0.00 0.00 0.00 3.86
986 1756 3.878778 AGCACTATTCGGCTTTCTGAAT 58.121 40.909 4.94 4.94 46.84 2.57
1185 1955 3.571828 TGCAGATAAAGAGGGAGATCTCG 59.428 47.826 16.46 0.00 38.71 4.04
1332 2102 0.250234 AGTTAAGCGAGGATGCTGCA 59.750 50.000 4.13 4.13 46.60 4.41
1917 2719 5.006386 AGCAATTCAGAGGTTAACCAAGAG 58.994 41.667 26.26 12.79 38.89 2.85
2082 2884 2.226962 AGCTGAATGAAGTGGCCAAT 57.773 45.000 7.24 1.65 0.00 3.16
2373 3181 0.957395 AGCAGTCACCTTTGCCATCG 60.957 55.000 0.00 0.00 41.17 3.84
2374 3182 1.503542 CAGTCACCTTTGCCATCGC 59.496 57.895 0.00 0.00 0.00 4.58
2375 3183 1.073025 AGTCACCTTTGCCATCGCA 59.927 52.632 0.00 0.00 45.49 5.10
2421 3229 3.877357 CCATCGCAGCAGCAGCAG 61.877 66.667 10.77 0.00 45.49 4.24
2485 3317 1.410648 CCCCATTGCCAATCTGCTACT 60.411 52.381 0.00 0.00 0.00 2.57
2548 3380 3.746940 TCAGCAGTACCTACCAAAAACC 58.253 45.455 0.00 0.00 0.00 3.27
2625 3458 4.607606 CGCAGCAGCCGCATGATG 62.608 66.667 0.58 0.00 42.27 3.07
2631 3464 1.061411 CAGCCGCATGATGTGTTCG 59.939 57.895 5.17 0.00 0.00 3.95
2744 3580 4.741928 TTTCCCCCTTCTTTTTAGCTCT 57.258 40.909 0.00 0.00 0.00 4.09
2864 3700 4.998788 TCGGTGTGACTGAAGATATTGAG 58.001 43.478 0.00 0.00 28.96 3.02
2871 3707 5.751028 GTGACTGAAGATATTGAGTAGCCAC 59.249 44.000 0.00 0.00 0.00 5.01
2882 3718 3.325870 TGAGTAGCCACAACAGAAATCG 58.674 45.455 0.00 0.00 0.00 3.34
2965 3802 0.036765 TATGTGGAACCCGTGTGAGC 60.037 55.000 0.00 0.00 34.36 4.26
2980 3817 4.641954 GTGTGAGCGAACAAACATCTATG 58.358 43.478 0.00 0.00 0.00 2.23
2983 3820 4.388773 GTGAGCGAACAAACATCTATGTGA 59.611 41.667 0.00 0.00 41.61 3.58
2985 3822 5.643348 TGAGCGAACAAACATCTATGTGAAT 59.357 36.000 0.00 0.00 41.61 2.57
3018 3855 7.727578 TTGACCAGAACTACTGTATATGGAA 57.272 36.000 8.62 0.00 44.40 3.53
3056 3906 9.900710 GTTTTTCTGGTTAAAAATTGGTTGTTT 57.099 25.926 0.00 0.00 39.70 2.83
3102 3952 5.769662 TGAATGTTCATCAGTTAGTGCCTTT 59.230 36.000 0.00 0.00 31.01 3.11
3129 3979 9.170734 TGAAGGAGCTAAATATCATGATTATGC 57.829 33.333 14.65 11.28 34.21 3.14
3130 3980 9.393512 GAAGGAGCTAAATATCATGATTATGCT 57.606 33.333 14.65 15.44 34.21 3.79
3131 3981 8.734218 AGGAGCTAAATATCATGATTATGCTG 57.266 34.615 14.65 2.13 34.21 4.41
3132 3982 7.774157 AGGAGCTAAATATCATGATTATGCTGG 59.226 37.037 14.65 0.61 34.21 4.85
3133 3983 7.772292 GGAGCTAAATATCATGATTATGCTGGA 59.228 37.037 14.65 0.00 34.21 3.86
3134 3984 9.170734 GAGCTAAATATCATGATTATGCTGGAA 57.829 33.333 14.65 0.00 34.21 3.53
3135 3985 9.696572 AGCTAAATATCATGATTATGCTGGAAT 57.303 29.630 14.65 0.00 34.21 3.01
3142 3992 7.649533 TCATGATTATGCTGGAATTTTGTCT 57.350 32.000 0.00 0.00 34.21 3.41
3143 3993 8.750515 TCATGATTATGCTGGAATTTTGTCTA 57.249 30.769 0.00 0.00 34.21 2.59
3144 3994 9.358406 TCATGATTATGCTGGAATTTTGTCTAT 57.642 29.630 0.00 0.00 34.21 1.98
3145 3995 9.976511 CATGATTATGCTGGAATTTTGTCTATT 57.023 29.630 0.00 0.00 0.00 1.73
3151 4001 6.630071 TGCTGGAATTTTGTCTATTTTAGGC 58.370 36.000 0.00 0.00 0.00 3.93
3152 4002 6.042777 GCTGGAATTTTGTCTATTTTAGGCC 58.957 40.000 0.00 0.00 0.00 5.19
3153 4003 6.127338 GCTGGAATTTTGTCTATTTTAGGCCT 60.127 38.462 11.78 11.78 0.00 5.19
3154 4004 7.068226 GCTGGAATTTTGTCTATTTTAGGCCTA 59.932 37.037 8.91 8.91 0.00 3.93
3155 4005 8.519799 TGGAATTTTGTCTATTTTAGGCCTAG 57.480 34.615 13.36 2.40 0.00 3.02
3156 4006 7.068226 TGGAATTTTGTCTATTTTAGGCCTAGC 59.932 37.037 13.36 0.18 0.00 3.42
3169 4019 3.493767 GGCCTAGCCTAATAGCAGTTT 57.506 47.619 0.00 0.00 46.69 2.66
3170 4020 3.403968 GGCCTAGCCTAATAGCAGTTTC 58.596 50.000 0.00 0.00 46.69 2.78
3171 4021 3.181454 GGCCTAGCCTAATAGCAGTTTCA 60.181 47.826 0.00 0.00 46.69 2.69
3172 4022 4.061596 GCCTAGCCTAATAGCAGTTTCAG 58.938 47.826 0.00 0.00 34.23 3.02
3173 4023 4.202264 GCCTAGCCTAATAGCAGTTTCAGA 60.202 45.833 0.00 0.00 34.23 3.27
3174 4024 5.685075 GCCTAGCCTAATAGCAGTTTCAGAA 60.685 44.000 0.00 0.00 34.23 3.02
3175 4025 6.349300 CCTAGCCTAATAGCAGTTTCAGAAA 58.651 40.000 0.00 0.00 34.23 2.52
3176 4026 6.995091 CCTAGCCTAATAGCAGTTTCAGAAAT 59.005 38.462 0.00 0.00 34.23 2.17
3177 4027 7.500559 CCTAGCCTAATAGCAGTTTCAGAAATT 59.499 37.037 0.00 0.00 34.23 1.82
3178 4028 7.326968 AGCCTAATAGCAGTTTCAGAAATTC 57.673 36.000 0.00 0.00 34.23 2.17
3179 4029 6.319911 AGCCTAATAGCAGTTTCAGAAATTCC 59.680 38.462 0.00 0.00 34.23 3.01
3180 4030 6.319911 GCCTAATAGCAGTTTCAGAAATTCCT 59.680 38.462 0.00 0.00 0.00 3.36
3181 4031 7.680588 GCCTAATAGCAGTTTCAGAAATTCCTG 60.681 40.741 0.00 3.48 35.55 3.86
3182 4032 7.554118 CCTAATAGCAGTTTCAGAAATTCCTGA 59.446 37.037 13.63 0.00 41.06 3.86
3183 4033 7.951347 AATAGCAGTTTCAGAAATTCCTGAT 57.049 32.000 13.63 10.64 42.18 2.90
3185 4035 9.466497 AATAGCAGTTTCAGAAATTCCTGATAA 57.534 29.630 13.63 0.00 42.18 1.75
3186 4036 7.765695 AGCAGTTTCAGAAATTCCTGATAAA 57.234 32.000 13.63 0.00 42.18 1.40
3187 4037 8.358582 AGCAGTTTCAGAAATTCCTGATAAAT 57.641 30.769 13.63 0.00 42.18 1.40
3188 4038 8.465201 AGCAGTTTCAGAAATTCCTGATAAATC 58.535 33.333 13.63 0.00 42.18 2.17
3189 4039 7.704047 GCAGTTTCAGAAATTCCTGATAAATCC 59.296 37.037 13.63 0.00 42.18 3.01
3190 4040 8.964772 CAGTTTCAGAAATTCCTGATAAATCCT 58.035 33.333 0.00 0.00 42.18 3.24
3195 4045 8.654997 TCAGAAATTCCTGATAAATCCTAGAGG 58.345 37.037 0.00 0.00 38.18 3.69
3196 4046 7.390162 CAGAAATTCCTGATAAATCCTAGAGGC 59.610 40.741 0.00 0.00 36.29 4.70
3197 4047 5.770685 ATTCCTGATAAATCCTAGAGGCC 57.229 43.478 0.00 0.00 34.44 5.19
3198 4048 3.521727 TCCTGATAAATCCTAGAGGCCC 58.478 50.000 0.00 0.00 34.44 5.80
3199 4049 3.116356 TCCTGATAAATCCTAGAGGCCCA 60.116 47.826 0.00 0.00 34.44 5.36
3200 4050 3.008485 CCTGATAAATCCTAGAGGCCCAC 59.992 52.174 0.00 0.00 34.44 4.61
3201 4051 2.632996 TGATAAATCCTAGAGGCCCACG 59.367 50.000 0.00 0.00 34.44 4.94
3202 4052 0.756903 TAAATCCTAGAGGCCCACGC 59.243 55.000 0.00 0.00 34.44 5.34
3203 4053 1.271840 AAATCCTAGAGGCCCACGCA 61.272 55.000 0.00 0.00 36.38 5.24
3204 4054 1.690219 AATCCTAGAGGCCCACGCAG 61.690 60.000 0.00 0.00 36.38 5.18
3205 4055 4.537433 CCTAGAGGCCCACGCAGC 62.537 72.222 0.00 0.00 36.38 5.25
3212 4062 3.272334 GCCCACGCAGCCTATTCG 61.272 66.667 0.00 0.00 34.03 3.34
3213 4063 2.186903 CCCACGCAGCCTATTCGT 59.813 61.111 0.00 0.00 36.84 3.85
3215 4065 2.703409 CACGCAGCCTATTCGTGC 59.297 61.111 1.09 0.00 45.22 5.34
3216 4066 2.100031 CACGCAGCCTATTCGTGCA 61.100 57.895 1.09 0.00 45.22 4.57
3217 4067 1.375396 ACGCAGCCTATTCGTGCAA 60.375 52.632 0.00 0.00 37.01 4.08
3218 4068 1.349627 CGCAGCCTATTCGTGCAAG 59.650 57.895 0.00 0.00 37.01 4.01
3219 4069 1.723870 GCAGCCTATTCGTGCAAGG 59.276 57.895 0.00 0.00 37.16 3.61
3224 4074 1.737838 CCTATTCGTGCAAGGCAAGA 58.262 50.000 2.76 2.76 44.27 3.02
3225 4075 1.667724 CCTATTCGTGCAAGGCAAGAG 59.332 52.381 6.91 0.00 46.12 2.85
3226 4076 1.667724 CTATTCGTGCAAGGCAAGAGG 59.332 52.381 6.91 0.00 46.12 3.69
3227 4077 0.250901 ATTCGTGCAAGGCAAGAGGT 60.251 50.000 6.91 0.00 46.12 3.85
3228 4078 1.165907 TTCGTGCAAGGCAAGAGGTG 61.166 55.000 6.91 0.00 46.12 4.00
3229 4079 2.620112 CGTGCAAGGCAAGAGGTGG 61.620 63.158 0.00 0.00 41.47 4.61
3230 4080 1.228245 GTGCAAGGCAAGAGGTGGA 60.228 57.895 0.00 0.00 41.47 4.02
3231 4081 0.823356 GTGCAAGGCAAGAGGTGGAA 60.823 55.000 0.00 0.00 41.47 3.53
3232 4082 0.823356 TGCAAGGCAAGAGGTGGAAC 60.823 55.000 0.00 0.00 34.76 3.62
3233 4083 0.538287 GCAAGGCAAGAGGTGGAACT 60.538 55.000 0.00 0.00 36.74 3.01
3234 4084 1.271379 GCAAGGCAAGAGGTGGAACTA 60.271 52.381 0.00 0.00 36.74 2.24
3235 4085 2.814097 GCAAGGCAAGAGGTGGAACTAA 60.814 50.000 0.00 0.00 36.74 2.24
3236 4086 3.486383 CAAGGCAAGAGGTGGAACTAAA 58.514 45.455 0.00 0.00 36.74 1.85
3237 4087 3.425162 AGGCAAGAGGTGGAACTAAAG 57.575 47.619 0.00 0.00 36.74 1.85
3238 4088 2.979678 AGGCAAGAGGTGGAACTAAAGA 59.020 45.455 0.00 0.00 36.74 2.52
3239 4089 3.589288 AGGCAAGAGGTGGAACTAAAGAT 59.411 43.478 0.00 0.00 36.74 2.40
3240 4090 4.043435 AGGCAAGAGGTGGAACTAAAGATT 59.957 41.667 0.00 0.00 36.74 2.40
3241 4091 5.250774 AGGCAAGAGGTGGAACTAAAGATTA 59.749 40.000 0.00 0.00 36.74 1.75
3242 4092 5.586643 GGCAAGAGGTGGAACTAAAGATTAG 59.413 44.000 0.00 0.00 36.74 1.73
3243 4093 6.174049 GCAAGAGGTGGAACTAAAGATTAGT 58.826 40.000 0.00 0.00 36.74 2.24
3244 4094 6.314152 GCAAGAGGTGGAACTAAAGATTAGTC 59.686 42.308 3.44 0.00 36.74 2.59
3245 4095 6.547930 AGAGGTGGAACTAAAGATTAGTCC 57.452 41.667 3.44 7.28 36.74 3.85
3246 4096 5.425862 AGAGGTGGAACTAAAGATTAGTCCC 59.574 44.000 3.44 1.27 36.74 4.46
3247 4097 5.098663 AGGTGGAACTAAAGATTAGTCCCA 58.901 41.667 4.34 4.34 36.74 4.37
3250 4100 6.636454 TGGAACTAAAGATTAGTCCCACAT 57.364 37.500 4.34 0.00 26.45 3.21
3251 4101 7.027874 TGGAACTAAAGATTAGTCCCACATT 57.972 36.000 4.34 0.00 26.45 2.71
3252 4102 6.884295 TGGAACTAAAGATTAGTCCCACATTG 59.116 38.462 4.34 0.00 26.45 2.82
3253 4103 6.183360 GGAACTAAAGATTAGTCCCACATTGC 60.183 42.308 1.17 0.00 0.00 3.56
3254 4104 6.067217 ACTAAAGATTAGTCCCACATTGCT 57.933 37.500 0.00 0.00 0.00 3.91
3255 4105 7.195374 ACTAAAGATTAGTCCCACATTGCTA 57.805 36.000 0.00 0.00 0.00 3.49
3256 4106 7.275920 ACTAAAGATTAGTCCCACATTGCTAG 58.724 38.462 0.00 0.00 0.00 3.42
3257 4107 5.700402 AAGATTAGTCCCACATTGCTAGT 57.300 39.130 0.00 0.00 0.00 2.57
3258 4108 5.700402 AGATTAGTCCCACATTGCTAGTT 57.300 39.130 0.00 0.00 0.00 2.24
3259 4109 6.067217 AGATTAGTCCCACATTGCTAGTTT 57.933 37.500 0.00 0.00 0.00 2.66
3260 4110 7.195374 AGATTAGTCCCACATTGCTAGTTTA 57.805 36.000 0.00 0.00 0.00 2.01
3261 4111 7.275920 AGATTAGTCCCACATTGCTAGTTTAG 58.724 38.462 0.00 0.00 0.00 1.85
3262 4112 6.614694 TTAGTCCCACATTGCTAGTTTAGA 57.385 37.500 0.00 0.00 0.00 2.10
3263 4113 5.091261 AGTCCCACATTGCTAGTTTAGAG 57.909 43.478 0.00 0.00 0.00 2.43
3264 4114 4.777896 AGTCCCACATTGCTAGTTTAGAGA 59.222 41.667 0.00 0.00 0.00 3.10
3265 4115 5.105146 AGTCCCACATTGCTAGTTTAGAGAG 60.105 44.000 0.00 0.00 0.00 3.20
3266 4116 5.023452 TCCCACATTGCTAGTTTAGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
3267 4117 5.127845 TCCCACATTGCTAGTTTAGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
3268 4118 5.105146 CCCACATTGCTAGTTTAGAGAGAGT 60.105 44.000 0.00 0.00 0.00 3.24
3269 4119 6.402222 CCACATTGCTAGTTTAGAGAGAGTT 58.598 40.000 0.00 0.00 0.00 3.01
3270 4120 6.312426 CCACATTGCTAGTTTAGAGAGAGTTG 59.688 42.308 0.00 0.00 0.00 3.16
3271 4121 6.312426 CACATTGCTAGTTTAGAGAGAGTTGG 59.688 42.308 0.00 0.00 0.00 3.77
3272 4122 6.211584 ACATTGCTAGTTTAGAGAGAGTTGGA 59.788 38.462 0.00 0.00 0.00 3.53
3273 4123 5.646577 TGCTAGTTTAGAGAGAGTTGGAC 57.353 43.478 0.00 0.00 0.00 4.02
3274 4124 4.463186 TGCTAGTTTAGAGAGAGTTGGACC 59.537 45.833 0.00 0.00 0.00 4.46
3275 4125 4.707934 GCTAGTTTAGAGAGAGTTGGACCT 59.292 45.833 0.00 0.00 0.00 3.85
3276 4126 5.186215 GCTAGTTTAGAGAGAGTTGGACCTT 59.814 44.000 0.00 0.00 0.00 3.50
3277 4127 6.295405 GCTAGTTTAGAGAGAGTTGGACCTTT 60.295 42.308 0.00 0.00 0.00 3.11
3278 4128 6.502074 AGTTTAGAGAGAGTTGGACCTTTT 57.498 37.500 0.00 0.00 0.00 2.27
3279 4129 6.901300 AGTTTAGAGAGAGTTGGACCTTTTT 58.099 36.000 0.00 0.00 0.00 1.94
3280 4130 8.030913 AGTTTAGAGAGAGTTGGACCTTTTTA 57.969 34.615 0.00 0.00 0.00 1.52
3281 4131 8.661345 AGTTTAGAGAGAGTTGGACCTTTTTAT 58.339 33.333 0.00 0.00 0.00 1.40
3282 4132 9.939802 GTTTAGAGAGAGTTGGACCTTTTTATA 57.060 33.333 0.00 0.00 0.00 0.98
3285 4135 7.625469 AGAGAGAGTTGGACCTTTTTATAAGG 58.375 38.462 0.00 0.00 43.05 2.69
3286 4136 6.722328 AGAGAGTTGGACCTTTTTATAAGGG 58.278 40.000 6.42 1.46 41.71 3.95
3287 4137 6.504279 AGAGAGTTGGACCTTTTTATAAGGGA 59.496 38.462 6.42 0.00 41.71 4.20
3288 4138 6.722328 AGAGTTGGACCTTTTTATAAGGGAG 58.278 40.000 6.42 0.00 41.71 4.30
3289 4139 5.827756 AGTTGGACCTTTTTATAAGGGAGG 58.172 41.667 6.42 8.50 41.71 4.30
3290 4140 5.315109 AGTTGGACCTTTTTATAAGGGAGGT 59.685 40.000 13.30 13.30 43.12 3.85
3291 4141 5.871324 TGGACCTTTTTATAAGGGAGGTT 57.129 39.130 14.15 3.45 40.65 3.50
3292 4142 5.823312 TGGACCTTTTTATAAGGGAGGTTC 58.177 41.667 14.15 13.16 40.65 3.62
3293 4143 5.554350 TGGACCTTTTTATAAGGGAGGTTCT 59.446 40.000 16.83 0.79 40.65 3.01
3294 4144 6.046286 TGGACCTTTTTATAAGGGAGGTTCTT 59.954 38.462 16.83 0.00 40.65 2.52
3295 4145 6.952358 GGACCTTTTTATAAGGGAGGTTCTTT 59.048 38.462 14.15 0.00 40.65 2.52
3296 4146 7.122353 GGACCTTTTTATAAGGGAGGTTCTTTC 59.878 40.741 14.15 5.27 40.65 2.62
3297 4147 7.766628 ACCTTTTTATAAGGGAGGTTCTTTCT 58.233 34.615 6.42 0.00 41.71 2.52
3298 4148 7.889073 ACCTTTTTATAAGGGAGGTTCTTTCTC 59.111 37.037 6.42 0.00 41.71 2.87
3299 4149 7.065923 CCTTTTTATAAGGGAGGTTCTTTCTCG 59.934 40.741 0.00 0.00 32.39 4.04
3300 4150 3.545366 ATAAGGGAGGTTCTTTCTCGC 57.455 47.619 0.00 0.00 42.31 5.03
3301 4151 3.074788 AGGGAGGTTCTTTCTCGCT 57.925 52.632 5.09 5.09 45.62 4.93
3304 4154 3.545366 GGGAGGTTCTTTCTCGCTAAT 57.455 47.619 0.00 0.00 39.93 1.73
3305 4155 3.875125 GGGAGGTTCTTTCTCGCTAATT 58.125 45.455 0.00 0.00 39.93 1.40
3306 4156 4.262617 GGGAGGTTCTTTCTCGCTAATTT 58.737 43.478 0.00 0.00 39.93 1.82
3307 4157 4.700692 GGGAGGTTCTTTCTCGCTAATTTT 59.299 41.667 0.00 0.00 39.93 1.82
3308 4158 5.183331 GGGAGGTTCTTTCTCGCTAATTTTT 59.817 40.000 0.00 0.00 39.93 1.94
3384 4234 7.820044 TTTTCAAAAATAATACACCATCGGC 57.180 32.000 0.00 0.00 0.00 5.54
3385 4235 5.508200 TCAAAAATAATACACCATCGGCC 57.492 39.130 0.00 0.00 0.00 6.13
3386 4236 5.197451 TCAAAAATAATACACCATCGGCCT 58.803 37.500 0.00 0.00 0.00 5.19
3387 4237 6.358178 TCAAAAATAATACACCATCGGCCTA 58.642 36.000 0.00 0.00 0.00 3.93
3388 4238 6.261381 TCAAAAATAATACACCATCGGCCTAC 59.739 38.462 0.00 0.00 0.00 3.18
3389 4239 5.562298 AAATAATACACCATCGGCCTACT 57.438 39.130 0.00 0.00 0.00 2.57
3390 4240 2.910688 AATACACCATCGGCCTACTG 57.089 50.000 0.00 0.00 0.00 2.74
3391 4241 0.393077 ATACACCATCGGCCTACTGC 59.607 55.000 0.00 0.00 40.16 4.40
3392 4242 0.973496 TACACCATCGGCCTACTGCA 60.973 55.000 0.00 0.00 43.89 4.41
3393 4243 1.522355 CACCATCGGCCTACTGCAG 60.522 63.158 13.48 13.48 43.89 4.41
3430 4280 3.136123 CCCACAGCAGGCCGATTG 61.136 66.667 0.00 0.00 0.00 2.67
3431 4281 3.136123 CCACAGCAGGCCGATTGG 61.136 66.667 0.00 0.00 38.77 3.16
3432 4282 2.360350 CACAGCAGGCCGATTGGT 60.360 61.111 0.00 0.00 37.67 3.67
3433 4283 2.360350 ACAGCAGGCCGATTGGTG 60.360 61.111 18.21 18.21 46.50 4.17
3434 4284 3.136123 CAGCAGGCCGATTGGTGG 61.136 66.667 13.41 0.00 39.65 4.61
3441 4291 2.275089 CCGATTGGTGGCCCATCA 59.725 61.111 0.00 0.00 41.49 3.07
3442 4292 1.825191 CCGATTGGTGGCCCATCAG 60.825 63.158 0.00 0.00 41.49 2.90
3443 4293 1.077501 CGATTGGTGGCCCATCAGT 60.078 57.895 0.00 0.00 41.49 3.41
3444 4294 0.680921 CGATTGGTGGCCCATCAGTT 60.681 55.000 0.00 0.00 41.49 3.16
3445 4295 1.560505 GATTGGTGGCCCATCAGTTT 58.439 50.000 0.00 0.00 41.49 2.66
3446 4296 1.205417 GATTGGTGGCCCATCAGTTTG 59.795 52.381 0.00 0.00 41.49 2.93
3447 4297 0.105760 TTGGTGGCCCATCAGTTTGT 60.106 50.000 0.00 0.00 41.49 2.83
3448 4298 0.105760 TGGTGGCCCATCAGTTTGTT 60.106 50.000 0.00 0.00 35.17 2.83
3449 4299 0.318120 GGTGGCCCATCAGTTTGTTG 59.682 55.000 0.00 0.00 0.00 3.33
3450 4300 0.319813 GTGGCCCATCAGTTTGTTGC 60.320 55.000 0.00 0.00 0.00 4.17
3451 4301 0.469705 TGGCCCATCAGTTTGTTGCT 60.470 50.000 0.00 0.00 0.00 3.91
3452 4302 0.037975 GGCCCATCAGTTTGTTGCTG 60.038 55.000 0.00 0.00 35.43 4.41
3453 4303 0.037975 GCCCATCAGTTTGTTGCTGG 60.038 55.000 0.00 0.00 34.81 4.85
3454 4304 0.037975 CCCATCAGTTTGTTGCTGGC 60.038 55.000 0.00 0.00 33.92 4.85
3455 4305 0.037975 CCATCAGTTTGTTGCTGGCC 60.038 55.000 0.00 0.00 34.89 5.36
3456 4306 0.387622 CATCAGTTTGTTGCTGGCCG 60.388 55.000 0.00 0.00 34.89 6.13
3457 4307 0.537143 ATCAGTTTGTTGCTGGCCGA 60.537 50.000 0.00 0.00 34.89 5.54
3458 4308 0.537143 TCAGTTTGTTGCTGGCCGAT 60.537 50.000 0.00 0.00 34.89 4.18
3459 4309 0.314935 CAGTTTGTTGCTGGCCGATT 59.685 50.000 0.00 0.00 0.00 3.34
3460 4310 0.314935 AGTTTGTTGCTGGCCGATTG 59.685 50.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.069776 CTGTGTGTGGGTCCCAGAT 58.930 57.895 12.21 0.00 32.34 2.90
1 2 2.818169 GCTGTGTGTGGGTCCCAGA 61.818 63.158 12.21 7.44 32.34 3.86
145 169 6.598064 CCGGGATAATAAGATAAAAAGGCGAT 59.402 38.462 0.00 0.00 0.00 4.58
161 185 0.179029 CAGGAAACGGCCGGGATAAT 60.179 55.000 31.76 3.35 0.00 1.28
163 187 2.737881 CCAGGAAACGGCCGGGATA 61.738 63.158 31.76 0.00 44.97 2.59
164 188 4.109675 CCAGGAAACGGCCGGGAT 62.110 66.667 31.76 15.27 44.97 3.85
172 196 2.511600 CTAGCCGGCCAGGAAACG 60.512 66.667 26.15 0.00 45.00 3.60
241 265 2.558380 AAATTCCCTCCCCTCTGCGC 62.558 60.000 0.00 0.00 0.00 6.09
242 266 0.749454 CAAATTCCCTCCCCTCTGCG 60.749 60.000 0.00 0.00 0.00 5.18
243 267 0.396278 CCAAATTCCCTCCCCTCTGC 60.396 60.000 0.00 0.00 0.00 4.26
244 268 1.002857 ACCAAATTCCCTCCCCTCTG 58.997 55.000 0.00 0.00 0.00 3.35
245 269 2.206223 GTACCAAATTCCCTCCCCTCT 58.794 52.381 0.00 0.00 0.00 3.69
246 270 1.214673 GGTACCAAATTCCCTCCCCTC 59.785 57.143 7.15 0.00 0.00 4.30
247 271 1.305886 GGTACCAAATTCCCTCCCCT 58.694 55.000 7.15 0.00 0.00 4.79
248 272 0.106868 CGGTACCAAATTCCCTCCCC 60.107 60.000 13.54 0.00 0.00 4.81
257 281 2.304761 TGAGCTTCTTCCGGTACCAAAT 59.695 45.455 13.54 0.00 0.00 2.32
260 284 1.207089 CATGAGCTTCTTCCGGTACCA 59.793 52.381 13.54 0.00 0.00 3.25
264 288 4.215908 TCTATACATGAGCTTCTTCCGGT 58.784 43.478 0.00 0.00 0.00 5.28
266 290 6.686630 AGAATCTATACATGAGCTTCTTCCG 58.313 40.000 0.00 0.00 27.50 4.30
267 291 8.772705 CAAAGAATCTATACATGAGCTTCTTCC 58.227 37.037 0.00 0.00 38.04 3.46
322 394 9.923143 AGAGTTTACCCAAAATAATAGCAAAAC 57.077 29.630 0.00 0.00 0.00 2.43
347 419 3.120991 CGGCCGCTCGATTTTCTATAAAG 60.121 47.826 14.67 0.00 0.00 1.85
352 424 1.227147 CCGGCCGCTCGATTTTCTA 60.227 57.895 22.85 0.00 0.00 2.10
353 425 2.511600 CCGGCCGCTCGATTTTCT 60.512 61.111 22.85 0.00 0.00 2.52
355 427 1.029947 ATTTCCGGCCGCTCGATTTT 61.030 50.000 22.85 0.00 0.00 1.82
356 428 1.436983 GATTTCCGGCCGCTCGATTT 61.437 55.000 22.85 2.09 0.00 2.17
357 429 1.887707 GATTTCCGGCCGCTCGATT 60.888 57.895 22.85 0.70 0.00 3.34
358 430 2.280186 GATTTCCGGCCGCTCGAT 60.280 61.111 22.85 10.55 0.00 3.59
359 431 4.524318 GGATTTCCGGCCGCTCGA 62.524 66.667 22.85 9.45 0.00 4.04
365 437 3.147595 GCTTGGGGATTTCCGGCC 61.148 66.667 0.00 0.00 36.71 6.13
377 457 0.379669 GCAATCGGTCTGATGCTTGG 59.620 55.000 0.00 0.00 37.39 3.61
378 458 1.063616 CTGCAATCGGTCTGATGCTTG 59.936 52.381 13.68 4.18 37.39 4.01
379 459 1.339438 ACTGCAATCGGTCTGATGCTT 60.339 47.619 13.68 0.00 37.39 3.91
430 510 8.154856 GGCTAATCCCAACTAATACTATTGTGA 58.845 37.037 0.00 0.00 0.00 3.58
431 511 8.157476 AGGCTAATCCCAACTAATACTATTGTG 58.843 37.037 0.00 0.00 34.51 3.33
434 514 7.919151 GGAGGCTAATCCCAACTAATACTATT 58.081 38.462 0.00 0.00 32.79 1.73
436 516 6.930068 GGAGGCTAATCCCAACTAATACTA 57.070 41.667 0.00 0.00 32.79 1.82
437 517 5.827326 GGAGGCTAATCCCAACTAATACT 57.173 43.478 0.00 0.00 32.79 2.12
448 528 3.217626 CACTGAAATGGGAGGCTAATCC 58.782 50.000 0.00 0.00 38.76 3.01
449 529 2.620585 GCACTGAAATGGGAGGCTAATC 59.379 50.000 0.00 0.00 0.00 1.75
450 530 2.659428 GCACTGAAATGGGAGGCTAAT 58.341 47.619 0.00 0.00 0.00 1.73
451 531 1.340991 GGCACTGAAATGGGAGGCTAA 60.341 52.381 0.00 0.00 0.00 3.09
452 532 0.255890 GGCACTGAAATGGGAGGCTA 59.744 55.000 0.00 0.00 0.00 3.93
453 533 1.000396 GGCACTGAAATGGGAGGCT 60.000 57.895 0.00 0.00 0.00 4.58
454 534 2.054453 GGGCACTGAAATGGGAGGC 61.054 63.158 0.00 0.00 0.00 4.70
455 535 0.040204 AAGGGCACTGAAATGGGAGG 59.960 55.000 0.00 0.00 0.00 4.30
456 536 1.547372 CAAAGGGCACTGAAATGGGAG 59.453 52.381 0.00 0.00 0.00 4.30
458 538 0.609662 CCAAAGGGCACTGAAATGGG 59.390 55.000 0.00 0.00 0.00 4.00
471 563 0.830648 TCGATCCTACCAGCCAAAGG 59.169 55.000 0.00 0.00 0.00 3.11
472 564 1.482593 ACTCGATCCTACCAGCCAAAG 59.517 52.381 0.00 0.00 0.00 2.77
478 570 5.331876 AGAAGAAAACTCGATCCTACCAG 57.668 43.478 0.00 0.00 0.00 4.00
483 575 3.583086 TGGGAAGAAGAAAACTCGATCCT 59.417 43.478 0.00 0.00 0.00 3.24
488 580 6.036191 GCTATTACTGGGAAGAAGAAAACTCG 59.964 42.308 0.00 0.00 0.00 4.18
489 581 6.879458 TGCTATTACTGGGAAGAAGAAAACTC 59.121 38.462 0.00 0.00 0.00 3.01
493 585 6.620877 TCTGCTATTACTGGGAAGAAGAAA 57.379 37.500 0.00 0.00 0.00 2.52
496 588 6.593382 GCATATCTGCTATTACTGGGAAGAAG 59.407 42.308 0.00 0.00 45.32 2.85
519 611 3.500680 CGTTACTTGGCCTAAAAAGAGCA 59.499 43.478 3.32 0.00 0.00 4.26
523 970 5.240121 TCTACCGTTACTTGGCCTAAAAAG 58.760 41.667 3.32 0.83 0.00 2.27
525 972 4.888326 TCTACCGTTACTTGGCCTAAAA 57.112 40.909 3.32 0.00 0.00 1.52
533 980 4.751060 TGCCTAACATCTACCGTTACTTG 58.249 43.478 0.00 0.00 0.00 3.16
536 983 3.714391 CCTGCCTAACATCTACCGTTAC 58.286 50.000 0.00 0.00 0.00 2.50
541 988 2.565841 CAAGCCTGCCTAACATCTACC 58.434 52.381 0.00 0.00 0.00 3.18
544 991 3.181526 GCAAGCCTGCCTAACATCT 57.818 52.632 0.00 0.00 43.26 2.90
554 1001 2.095110 TCATCGTGATTTTGCAAGCCTG 60.095 45.455 0.00 0.00 0.00 4.85
556 1003 2.162208 TCTCATCGTGATTTTGCAAGCC 59.838 45.455 0.00 0.00 0.00 4.35
563 1306 6.992123 TGTATTGCCTATCTCATCGTGATTTT 59.008 34.615 0.00 0.00 0.00 1.82
591 1334 5.715439 ACCCAGGATAATTCTGTCATGAA 57.285 39.130 0.00 0.00 0.00 2.57
592 1335 5.715439 AACCCAGGATAATTCTGTCATGA 57.285 39.130 0.00 0.00 0.00 3.07
594 1337 6.735556 AGAAAACCCAGGATAATTCTGTCAT 58.264 36.000 0.00 0.00 0.00 3.06
624 1367 8.366359 ACAAGCATATTAAGTCTGGGATTTTT 57.634 30.769 0.00 0.00 0.00 1.94
625 1368 7.961326 ACAAGCATATTAAGTCTGGGATTTT 57.039 32.000 0.00 0.00 0.00 1.82
626 1369 8.275040 ACTACAAGCATATTAAGTCTGGGATTT 58.725 33.333 0.00 0.00 0.00 2.17
627 1370 7.806180 ACTACAAGCATATTAAGTCTGGGATT 58.194 34.615 0.00 0.00 0.00 3.01
628 1371 7.380423 ACTACAAGCATATTAAGTCTGGGAT 57.620 36.000 0.00 0.00 0.00 3.85
629 1372 6.808321 ACTACAAGCATATTAAGTCTGGGA 57.192 37.500 0.00 0.00 0.00 4.37
630 1373 7.497595 TGTACTACAAGCATATTAAGTCTGGG 58.502 38.462 0.00 0.00 0.00 4.45
631 1374 9.547753 AATGTACTACAAGCATATTAAGTCTGG 57.452 33.333 0.00 0.00 0.00 3.86
638 1382 9.825109 TGCTACAAATGTACTACAAGCATATTA 57.175 29.630 7.99 0.00 33.54 0.98
648 1400 7.295930 GGTTCAAGTTGCTACAAATGTACTAC 58.704 38.462 0.13 0.00 0.00 2.73
649 1401 6.428771 GGGTTCAAGTTGCTACAAATGTACTA 59.571 38.462 0.13 0.00 0.00 1.82
650 1402 5.240844 GGGTTCAAGTTGCTACAAATGTACT 59.759 40.000 0.13 0.00 0.00 2.73
653 1405 3.320826 GGGGTTCAAGTTGCTACAAATGT 59.679 43.478 0.13 0.00 0.00 2.71
671 1423 5.689835 AGCAAAATGTAAAACAAATGGGGT 58.310 33.333 0.00 0.00 0.00 4.95
682 1434 9.421806 CAGAACAAATATGGAGCAAAATGTAAA 57.578 29.630 0.00 0.00 0.00 2.01
691 1443 6.662755 ACCTAATCAGAACAAATATGGAGCA 58.337 36.000 0.00 0.00 0.00 4.26
776 1528 1.216710 CTCCCTGGAGCACTTCGAC 59.783 63.158 0.00 0.00 35.31 4.20
789 1542 1.800229 AATTCCGGGCCAAACTCCCT 61.800 55.000 4.39 0.00 41.69 4.20
845 1598 4.877378 AGACACAAATACCGAACCAGTA 57.123 40.909 0.00 0.00 0.00 2.74
846 1599 3.764237 AGACACAAATACCGAACCAGT 57.236 42.857 0.00 0.00 0.00 4.00
1185 1955 4.706962 GGATGCCTTACCAATCCCATTATC 59.293 45.833 0.00 0.00 0.00 1.75
1590 2360 5.048504 CAGCACAAACAGAATTACTCCACAT 60.049 40.000 0.00 0.00 0.00 3.21
1917 2719 0.955428 TTGTGAGGCTTGATGACGCC 60.955 55.000 0.00 0.00 46.65 5.68
2380 3188 1.154016 GTGATTGCTGCTGCTGCTG 60.154 57.895 27.67 16.73 40.48 4.41
2381 3189 2.341101 GGTGATTGCTGCTGCTGCT 61.341 57.895 27.67 12.31 40.48 4.24
2382 3190 1.874345 AAGGTGATTGCTGCTGCTGC 61.874 55.000 22.51 22.51 40.48 5.25
2485 3317 3.325870 CATCTCGTCCTGTGCTTTTGTA 58.674 45.455 0.00 0.00 0.00 2.41
2548 3380 4.423732 GTTTATAGGTGCTGCCAACAATG 58.576 43.478 0.00 0.00 40.61 2.82
2617 3450 1.787989 GCTGTTCGAACACATCATGCG 60.788 52.381 26.53 15.09 34.70 4.73
2625 3458 1.279840 GCACTGGCTGTTCGAACAC 59.720 57.895 26.53 21.06 36.96 3.32
2631 3464 1.672881 GTCATATGGCACTGGCTGTTC 59.327 52.381 1.45 0.00 40.87 3.18
2864 3700 2.159627 CCACGATTTCTGTTGTGGCTAC 59.840 50.000 0.00 0.00 44.45 3.58
2871 3707 1.068402 TGCATGCCACGATTTCTGTTG 60.068 47.619 16.68 0.00 0.00 3.33
2965 3802 6.963242 CCAGAATTCACATAGATGTTTGTTCG 59.037 38.462 8.44 0.00 39.39 3.95
3029 3866 8.622948 ACAACCAATTTTTAACCAGAAAAACA 57.377 26.923 0.00 0.00 40.20 2.83
3030 3867 9.900710 AAACAACCAATTTTTAACCAGAAAAAC 57.099 25.926 0.00 0.00 40.20 2.43
3042 3879 9.679661 AACTGGAAAGATAAACAACCAATTTTT 57.320 25.926 0.00 0.00 0.00 1.94
3043 3880 9.679661 AAACTGGAAAGATAAACAACCAATTTT 57.320 25.926 0.00 0.00 0.00 1.82
3044 3881 9.679661 AAAACTGGAAAGATAAACAACCAATTT 57.320 25.926 0.00 0.00 30.21 1.82
3045 3882 9.679661 AAAAACTGGAAAGATAAACAACCAATT 57.320 25.926 0.00 0.00 0.00 2.32
3072 3922 9.793252 GCACTAACTGATGAACATTCAAAATAT 57.207 29.630 0.00 0.00 41.13 1.28
3128 3978 6.042777 GGCCTAAAATAGACAAAATTCCAGC 58.957 40.000 0.00 0.00 0.00 4.85
3129 3979 7.410120 AGGCCTAAAATAGACAAAATTCCAG 57.590 36.000 1.29 0.00 0.00 3.86
3130 3980 7.068226 GCTAGGCCTAAAATAGACAAAATTCCA 59.932 37.037 14.85 0.00 0.00 3.53
3131 3981 7.426410 GCTAGGCCTAAAATAGACAAAATTCC 58.574 38.462 14.85 0.00 0.00 3.01
3132 3982 7.426410 GGCTAGGCCTAAAATAGACAAAATTC 58.574 38.462 14.85 0.00 46.69 2.17
3133 3983 7.348080 GGCTAGGCCTAAAATAGACAAAATT 57.652 36.000 14.85 0.00 46.69 1.82
3134 3984 6.961360 GGCTAGGCCTAAAATAGACAAAAT 57.039 37.500 14.85 0.00 46.69 1.82
3150 4000 4.061596 CTGAAACTGCTATTAGGCTAGGC 58.938 47.826 8.55 8.55 0.00 3.93
3151 4001 5.537300 TCTGAAACTGCTATTAGGCTAGG 57.463 43.478 0.00 0.00 0.00 3.02
3152 4002 8.443953 AATTTCTGAAACTGCTATTAGGCTAG 57.556 34.615 4.73 0.00 0.00 3.42
3153 4003 7.499232 GGAATTTCTGAAACTGCTATTAGGCTA 59.501 37.037 4.73 0.00 0.00 3.93
3154 4004 6.319911 GGAATTTCTGAAACTGCTATTAGGCT 59.680 38.462 4.73 0.00 0.00 4.58
3155 4005 6.319911 AGGAATTTCTGAAACTGCTATTAGGC 59.680 38.462 3.77 0.00 0.00 3.93
3156 4006 7.554118 TCAGGAATTTCTGAAACTGCTATTAGG 59.446 37.037 14.37 0.00 40.43 2.69
3157 4007 8.498054 TCAGGAATTTCTGAAACTGCTATTAG 57.502 34.615 14.37 0.00 40.43 1.73
3159 4009 7.951347 ATCAGGAATTTCTGAAACTGCTATT 57.049 32.000 20.35 0.00 45.54 1.73
3160 4010 9.466497 TTTATCAGGAATTTCTGAAACTGCTAT 57.534 29.630 20.35 4.14 45.54 2.97
3161 4011 8.862325 TTTATCAGGAATTTCTGAAACTGCTA 57.138 30.769 20.35 4.59 45.54 3.49
3162 4012 7.765695 TTTATCAGGAATTTCTGAAACTGCT 57.234 32.000 20.35 5.58 45.54 4.24
3163 4013 7.704047 GGATTTATCAGGAATTTCTGAAACTGC 59.296 37.037 20.35 11.13 45.54 4.40
3164 4014 8.964772 AGGATTTATCAGGAATTTCTGAAACTG 58.035 33.333 20.35 8.66 45.54 3.16
3169 4019 8.654997 CCTCTAGGATTTATCAGGAATTTCTGA 58.345 37.037 18.85 18.85 41.79 3.27
3170 4020 7.390162 GCCTCTAGGATTTATCAGGAATTTCTG 59.610 40.741 7.50 7.50 37.39 3.02
3171 4021 7.457561 GCCTCTAGGATTTATCAGGAATTTCT 58.542 38.462 0.00 0.00 37.39 2.52
3172 4022 6.657117 GGCCTCTAGGATTTATCAGGAATTTC 59.343 42.308 0.00 0.00 37.39 2.17
3173 4023 6.467921 GGGCCTCTAGGATTTATCAGGAATTT 60.468 42.308 0.84 0.00 37.39 1.82
3174 4024 5.014649 GGGCCTCTAGGATTTATCAGGAATT 59.985 44.000 0.84 0.00 37.39 2.17
3175 4025 4.538089 GGGCCTCTAGGATTTATCAGGAAT 59.462 45.833 0.84 0.00 37.39 3.01
3176 4026 3.910627 GGGCCTCTAGGATTTATCAGGAA 59.089 47.826 0.84 0.00 37.39 3.36
3177 4027 3.116356 TGGGCCTCTAGGATTTATCAGGA 60.116 47.826 4.53 0.00 37.39 3.86
3178 4028 3.008485 GTGGGCCTCTAGGATTTATCAGG 59.992 52.174 4.53 0.00 37.39 3.86
3179 4029 3.306364 CGTGGGCCTCTAGGATTTATCAG 60.306 52.174 4.53 0.00 37.39 2.90
3180 4030 2.632996 CGTGGGCCTCTAGGATTTATCA 59.367 50.000 4.53 0.00 37.39 2.15
3181 4031 2.613223 GCGTGGGCCTCTAGGATTTATC 60.613 54.545 4.53 0.00 37.39 1.75
3182 4032 1.348036 GCGTGGGCCTCTAGGATTTAT 59.652 52.381 4.53 0.00 37.39 1.40
3183 4033 0.756903 GCGTGGGCCTCTAGGATTTA 59.243 55.000 4.53 0.00 37.39 1.40
3184 4034 1.271840 TGCGTGGGCCTCTAGGATTT 61.272 55.000 4.53 0.00 38.85 2.17
3185 4035 1.689233 TGCGTGGGCCTCTAGGATT 60.689 57.895 4.53 0.00 38.85 3.01
3186 4036 2.041922 TGCGTGGGCCTCTAGGAT 60.042 61.111 4.53 0.00 38.85 3.24
3187 4037 2.759973 CTGCGTGGGCCTCTAGGA 60.760 66.667 4.53 0.00 38.85 2.94
3188 4038 4.537433 GCTGCGTGGGCCTCTAGG 62.537 72.222 4.53 0.00 38.85 3.02
3189 4039 4.537433 GGCTGCGTGGGCCTCTAG 62.537 72.222 4.53 3.75 45.57 2.43
3195 4045 3.272334 CGAATAGGCTGCGTGGGC 61.272 66.667 4.91 0.00 40.52 5.36
3196 4046 2.186903 ACGAATAGGCTGCGTGGG 59.813 61.111 4.91 0.00 36.83 4.61
3199 4049 1.361668 CTTGCACGAATAGGCTGCGT 61.362 55.000 0.00 1.16 39.04 5.24
3200 4050 1.349627 CTTGCACGAATAGGCTGCG 59.650 57.895 0.00 0.43 33.35 5.18
3201 4051 1.723870 CCTTGCACGAATAGGCTGC 59.276 57.895 0.00 0.00 0.00 5.25
3205 4055 1.667724 CTCTTGCCTTGCACGAATAGG 59.332 52.381 0.00 0.00 38.71 2.57
3206 4056 1.667724 CCTCTTGCCTTGCACGAATAG 59.332 52.381 0.00 0.00 38.71 1.73
3207 4057 1.003118 ACCTCTTGCCTTGCACGAATA 59.997 47.619 0.00 0.00 38.71 1.75
3208 4058 0.250901 ACCTCTTGCCTTGCACGAAT 60.251 50.000 0.00 0.00 38.71 3.34
3209 4059 1.148273 ACCTCTTGCCTTGCACGAA 59.852 52.632 0.00 0.00 38.71 3.85
3210 4060 1.597854 CACCTCTTGCCTTGCACGA 60.598 57.895 0.00 0.00 38.71 4.35
3211 4061 2.620112 CCACCTCTTGCCTTGCACG 61.620 63.158 0.00 0.00 38.71 5.34
3212 4062 0.823356 TTCCACCTCTTGCCTTGCAC 60.823 55.000 0.00 0.00 38.71 4.57
3213 4063 0.823356 GTTCCACCTCTTGCCTTGCA 60.823 55.000 0.00 0.00 36.47 4.08
3214 4064 0.538287 AGTTCCACCTCTTGCCTTGC 60.538 55.000 0.00 0.00 0.00 4.01
3215 4065 2.859165 TAGTTCCACCTCTTGCCTTG 57.141 50.000 0.00 0.00 0.00 3.61
3216 4066 3.394606 TCTTTAGTTCCACCTCTTGCCTT 59.605 43.478 0.00 0.00 0.00 4.35
3217 4067 2.979678 TCTTTAGTTCCACCTCTTGCCT 59.020 45.455 0.00 0.00 0.00 4.75
3218 4068 3.418684 TCTTTAGTTCCACCTCTTGCC 57.581 47.619 0.00 0.00 0.00 4.52
3219 4069 6.174049 ACTAATCTTTAGTTCCACCTCTTGC 58.826 40.000 0.00 0.00 0.00 4.01
3220 4070 6.819146 GGACTAATCTTTAGTTCCACCTCTTG 59.181 42.308 1.76 0.00 0.00 3.02
3221 4071 6.070136 GGGACTAATCTTTAGTTCCACCTCTT 60.070 42.308 16.57 0.00 41.78 2.85
3222 4072 5.425862 GGGACTAATCTTTAGTTCCACCTCT 59.574 44.000 16.57 0.00 41.78 3.69
3223 4073 5.189145 TGGGACTAATCTTTAGTTCCACCTC 59.811 44.000 19.18 1.10 45.69 3.85
3224 4074 5.098663 TGGGACTAATCTTTAGTTCCACCT 58.901 41.667 19.18 0.00 45.69 4.00
3225 4075 5.431179 TGGGACTAATCTTTAGTTCCACC 57.569 43.478 19.18 11.47 45.69 4.61
3228 4078 6.183360 GCAATGTGGGACTAATCTTTAGTTCC 60.183 42.308 15.16 15.16 42.37 3.62
3229 4079 6.599638 AGCAATGTGGGACTAATCTTTAGTTC 59.400 38.462 1.76 0.00 0.00 3.01
3230 4080 6.485171 AGCAATGTGGGACTAATCTTTAGTT 58.515 36.000 1.76 0.00 0.00 2.24
3231 4081 6.067217 AGCAATGTGGGACTAATCTTTAGT 57.933 37.500 0.00 0.00 0.00 2.24
3232 4082 7.275920 ACTAGCAATGTGGGACTAATCTTTAG 58.724 38.462 0.00 0.00 0.00 1.85
3233 4083 7.195374 ACTAGCAATGTGGGACTAATCTTTA 57.805 36.000 0.00 0.00 0.00 1.85
3234 4084 6.067217 ACTAGCAATGTGGGACTAATCTTT 57.933 37.500 0.00 0.00 0.00 2.52
3235 4085 5.700402 ACTAGCAATGTGGGACTAATCTT 57.300 39.130 0.00 0.00 0.00 2.40
3236 4086 5.700402 AACTAGCAATGTGGGACTAATCT 57.300 39.130 0.00 0.00 0.00 2.40
3237 4087 7.272978 TCTAAACTAGCAATGTGGGACTAATC 58.727 38.462 0.00 0.00 0.00 1.75
3238 4088 7.125811 TCTCTAAACTAGCAATGTGGGACTAAT 59.874 37.037 0.00 0.00 0.00 1.73
3239 4089 6.439375 TCTCTAAACTAGCAATGTGGGACTAA 59.561 38.462 0.00 0.00 0.00 2.24
3240 4090 5.955959 TCTCTAAACTAGCAATGTGGGACTA 59.044 40.000 0.00 0.00 0.00 2.59
3241 4091 4.777896 TCTCTAAACTAGCAATGTGGGACT 59.222 41.667 0.00 0.00 0.00 3.85
3242 4092 5.086104 TCTCTAAACTAGCAATGTGGGAC 57.914 43.478 0.00 0.00 0.00 4.46
3243 4093 5.023452 TCTCTCTAAACTAGCAATGTGGGA 58.977 41.667 0.00 0.00 0.00 4.37
3244 4094 5.105146 ACTCTCTCTAAACTAGCAATGTGGG 60.105 44.000 0.00 0.00 0.00 4.61
3245 4095 5.971763 ACTCTCTCTAAACTAGCAATGTGG 58.028 41.667 0.00 0.00 0.00 4.17
3246 4096 6.312426 CCAACTCTCTCTAAACTAGCAATGTG 59.688 42.308 0.00 0.00 0.00 3.21
3247 4097 6.211584 TCCAACTCTCTCTAAACTAGCAATGT 59.788 38.462 0.00 0.00 0.00 2.71
3248 4098 6.533367 GTCCAACTCTCTCTAAACTAGCAATG 59.467 42.308 0.00 0.00 0.00 2.82
3249 4099 6.351456 GGTCCAACTCTCTCTAAACTAGCAAT 60.351 42.308 0.00 0.00 0.00 3.56
3250 4100 5.047235 GGTCCAACTCTCTCTAAACTAGCAA 60.047 44.000 0.00 0.00 0.00 3.91
3251 4101 4.463186 GGTCCAACTCTCTCTAAACTAGCA 59.537 45.833 0.00 0.00 0.00 3.49
3252 4102 4.707934 AGGTCCAACTCTCTCTAAACTAGC 59.292 45.833 0.00 0.00 0.00 3.42
3253 4103 6.844097 AAGGTCCAACTCTCTCTAAACTAG 57.156 41.667 0.00 0.00 0.00 2.57
3254 4104 7.613551 AAAAGGTCCAACTCTCTCTAAACTA 57.386 36.000 0.00 0.00 0.00 2.24
3255 4105 6.502074 AAAAGGTCCAACTCTCTCTAAACT 57.498 37.500 0.00 0.00 0.00 2.66
3256 4106 8.850007 ATAAAAAGGTCCAACTCTCTCTAAAC 57.150 34.615 0.00 0.00 0.00 2.01
3259 4109 8.759782 CCTTATAAAAAGGTCCAACTCTCTCTA 58.240 37.037 0.00 0.00 32.78 2.43
3260 4110 7.311360 CCCTTATAAAAAGGTCCAACTCTCTCT 60.311 40.741 3.27 0.00 35.65 3.10
3261 4111 6.824196 CCCTTATAAAAAGGTCCAACTCTCTC 59.176 42.308 3.27 0.00 35.65 3.20
3262 4112 6.504279 TCCCTTATAAAAAGGTCCAACTCTCT 59.496 38.462 3.27 0.00 35.65 3.10
3263 4113 6.718294 TCCCTTATAAAAAGGTCCAACTCTC 58.282 40.000 3.27 0.00 35.65 3.20
3264 4114 6.297068 CCTCCCTTATAAAAAGGTCCAACTCT 60.297 42.308 3.27 0.00 35.65 3.24
3265 4115 5.886474 CCTCCCTTATAAAAAGGTCCAACTC 59.114 44.000 3.27 0.00 35.65 3.01
3266 4116 5.315109 ACCTCCCTTATAAAAAGGTCCAACT 59.685 40.000 7.10 0.00 35.42 3.16
3267 4117 5.577100 ACCTCCCTTATAAAAAGGTCCAAC 58.423 41.667 7.10 0.00 35.42 3.77
3268 4118 5.871324 ACCTCCCTTATAAAAAGGTCCAA 57.129 39.130 7.10 0.00 35.42 3.53
3269 4119 5.554350 AGAACCTCCCTTATAAAAAGGTCCA 59.446 40.000 11.51 0.00 39.40 4.02
3270 4120 6.075949 AGAACCTCCCTTATAAAAAGGTCC 57.924 41.667 11.51 2.45 39.40 4.46
3271 4121 7.889073 AGAAAGAACCTCCCTTATAAAAAGGTC 59.111 37.037 11.51 7.31 39.40 3.85
3272 4122 7.766628 AGAAAGAACCTCCCTTATAAAAAGGT 58.233 34.615 7.10 7.10 42.08 3.50
3273 4123 7.065923 CGAGAAAGAACCTCCCTTATAAAAAGG 59.934 40.741 6.09 6.09 37.17 3.11
3274 4124 7.414208 GCGAGAAAGAACCTCCCTTATAAAAAG 60.414 40.741 0.00 0.00 0.00 2.27
3275 4125 6.373495 GCGAGAAAGAACCTCCCTTATAAAAA 59.627 38.462 0.00 0.00 0.00 1.94
3276 4126 5.878669 GCGAGAAAGAACCTCCCTTATAAAA 59.121 40.000 0.00 0.00 0.00 1.52
3277 4127 5.189145 AGCGAGAAAGAACCTCCCTTATAAA 59.811 40.000 0.00 0.00 0.00 1.40
3278 4128 4.715297 AGCGAGAAAGAACCTCCCTTATAA 59.285 41.667 0.00 0.00 0.00 0.98
3279 4129 4.287552 AGCGAGAAAGAACCTCCCTTATA 58.712 43.478 0.00 0.00 0.00 0.98
3280 4130 3.108376 AGCGAGAAAGAACCTCCCTTAT 58.892 45.455 0.00 0.00 0.00 1.73
3281 4131 2.537143 AGCGAGAAAGAACCTCCCTTA 58.463 47.619 0.00 0.00 0.00 2.69
3282 4132 1.353091 AGCGAGAAAGAACCTCCCTT 58.647 50.000 0.00 0.00 0.00 3.95
3283 4133 2.233305 TAGCGAGAAAGAACCTCCCT 57.767 50.000 0.00 0.00 0.00 4.20
3284 4134 3.545366 ATTAGCGAGAAAGAACCTCCC 57.455 47.619 0.00 0.00 0.00 4.30
3285 4135 5.881777 AAAATTAGCGAGAAAGAACCTCC 57.118 39.130 0.00 0.00 0.00 4.30
3358 4208 8.878769 GCCGATGGTGTATTATTTTTGAAAATT 58.121 29.630 6.98 0.00 39.24 1.82
3359 4209 7.494298 GGCCGATGGTGTATTATTTTTGAAAAT 59.506 33.333 6.88 6.88 41.24 1.82
3360 4210 6.814146 GGCCGATGGTGTATTATTTTTGAAAA 59.186 34.615 0.00 0.00 0.00 2.29
3361 4211 6.153680 AGGCCGATGGTGTATTATTTTTGAAA 59.846 34.615 0.00 0.00 0.00 2.69
3362 4212 5.654650 AGGCCGATGGTGTATTATTTTTGAA 59.345 36.000 0.00 0.00 0.00 2.69
3363 4213 5.197451 AGGCCGATGGTGTATTATTTTTGA 58.803 37.500 0.00 0.00 0.00 2.69
3364 4214 5.514274 AGGCCGATGGTGTATTATTTTTG 57.486 39.130 0.00 0.00 0.00 2.44
3365 4215 6.262273 CAGTAGGCCGATGGTGTATTATTTTT 59.738 38.462 0.00 0.00 0.00 1.94
3366 4216 5.763204 CAGTAGGCCGATGGTGTATTATTTT 59.237 40.000 0.00 0.00 0.00 1.82
3367 4217 5.305585 CAGTAGGCCGATGGTGTATTATTT 58.694 41.667 0.00 0.00 0.00 1.40
3368 4218 4.802918 GCAGTAGGCCGATGGTGTATTATT 60.803 45.833 0.00 0.00 36.11 1.40
3369 4219 3.306780 GCAGTAGGCCGATGGTGTATTAT 60.307 47.826 0.00 0.00 36.11 1.28
3370 4220 2.036733 GCAGTAGGCCGATGGTGTATTA 59.963 50.000 0.00 0.00 36.11 0.98
3371 4221 1.202651 GCAGTAGGCCGATGGTGTATT 60.203 52.381 0.00 0.00 36.11 1.89
3372 4222 0.393077 GCAGTAGGCCGATGGTGTAT 59.607 55.000 0.00 0.00 36.11 2.29
3373 4223 0.973496 TGCAGTAGGCCGATGGTGTA 60.973 55.000 0.00 0.00 43.89 2.90
3374 4224 2.244117 CTGCAGTAGGCCGATGGTGT 62.244 60.000 5.25 0.00 43.89 4.16
3375 4225 1.522355 CTGCAGTAGGCCGATGGTG 60.522 63.158 5.25 0.00 43.89 4.17
3376 4226 2.735772 CCTGCAGTAGGCCGATGGT 61.736 63.158 13.81 0.00 43.89 3.55
3377 4227 2.109799 CCTGCAGTAGGCCGATGG 59.890 66.667 13.81 0.00 43.89 3.51
3385 4235 1.140589 CTCAGTCGGCCTGCAGTAG 59.859 63.158 13.81 3.41 41.25 2.57
3386 4236 3.006756 GCTCAGTCGGCCTGCAGTA 62.007 63.158 13.81 0.00 41.25 2.74
3387 4237 4.385405 GCTCAGTCGGCCTGCAGT 62.385 66.667 13.81 0.00 41.25 4.40
3413 4263 3.136123 CAATCGGCCTGCTGTGGG 61.136 66.667 0.00 0.00 0.00 4.61
3414 4264 3.136123 CCAATCGGCCTGCTGTGG 61.136 66.667 0.00 0.00 0.00 4.17
3415 4265 2.360350 ACCAATCGGCCTGCTGTG 60.360 61.111 0.00 0.00 34.57 3.66
3416 4266 2.360350 CACCAATCGGCCTGCTGT 60.360 61.111 0.00 0.00 34.57 4.40
3417 4267 3.136123 CCACCAATCGGCCTGCTG 61.136 66.667 0.00 0.00 34.57 4.41
3430 4280 0.318120 CAACAAACTGATGGGCCACC 59.682 55.000 9.28 0.00 37.24 4.61
3431 4281 0.319813 GCAACAAACTGATGGGCCAC 60.320 55.000 9.28 3.39 0.00 5.01
3432 4282 0.469705 AGCAACAAACTGATGGGCCA 60.470 50.000 9.61 9.61 0.00 5.36
3433 4283 0.037975 CAGCAACAAACTGATGGGCC 60.038 55.000 0.00 0.00 37.32 5.80
3434 4284 0.037975 CCAGCAACAAACTGATGGGC 60.038 55.000 0.00 0.00 46.92 5.36
3437 4287 0.387622 CGGCCAGCAACAAACTGATG 60.388 55.000 2.24 0.00 37.32 3.07
3438 4288 0.537143 TCGGCCAGCAACAAACTGAT 60.537 50.000 2.24 0.00 37.32 2.90
3439 4289 0.537143 ATCGGCCAGCAACAAACTGA 60.537 50.000 2.24 0.00 37.32 3.41
3440 4290 0.314935 AATCGGCCAGCAACAAACTG 59.685 50.000 2.24 0.00 34.82 3.16
3441 4291 0.314935 CAATCGGCCAGCAACAAACT 59.685 50.000 2.24 0.00 0.00 2.66
3442 4292 2.813100 CAATCGGCCAGCAACAAAC 58.187 52.632 2.24 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.