Multiple sequence alignment - TraesCS6D01G123900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G123900 chr6D 100.000 6906 0 0 1 6906 88881905 88875000 0.000000e+00 12754.0
1 TraesCS6D01G123900 chr6B 95.775 2722 61 7 2137 4805 169224539 169221819 0.000000e+00 4340.0
2 TraesCS6D01G123900 chr6B 93.308 2122 91 20 4807 6906 169221760 169219668 0.000000e+00 3085.0
3 TraesCS6D01G123900 chr6B 93.506 1309 62 12 835 2139 169225931 169224642 0.000000e+00 1925.0
4 TraesCS6D01G123900 chr6B 91.640 311 24 2 128 437 169226652 169226343 4.950000e-116 429.0
5 TraesCS6D01G123900 chr6B 85.185 297 40 3 432 725 169226288 169225993 1.130000e-77 302.0
6 TraesCS6D01G123900 chr6B 94.355 124 7 0 1 124 638492443 638492320 2.540000e-44 191.0
7 TraesCS6D01G123900 chr6B 87.500 64 2 6 4802 4862 617617804 617617744 1.240000e-07 69.4
8 TraesCS6D01G123900 chr6A 95.909 1320 40 6 5018 6323 106930987 106929668 0.000000e+00 2126.0
9 TraesCS6D01G123900 chr6A 90.854 1498 111 18 1601 3094 106935770 106934295 0.000000e+00 1984.0
10 TraesCS6D01G123900 chr6A 87.463 1691 166 21 3150 4802 106933219 106931537 0.000000e+00 1906.0
11 TraesCS6D01G123900 chr6A 87.712 765 47 21 860 1596 106936634 106935889 0.000000e+00 848.0
12 TraesCS6D01G123900 chr6A 92.437 476 19 4 6325 6788 106929508 106929038 0.000000e+00 664.0
13 TraesCS6D01G123900 chr6A 100.000 42 0 0 4943 4984 106931105 106931064 2.070000e-10 78.7
14 TraesCS6D01G123900 chr5B 95.968 124 5 0 1 124 684432789 684432912 1.170000e-47 202.0
15 TraesCS6D01G123900 chr5B 92.683 123 9 0 2 124 84328540 84328418 1.980000e-40 178.0
16 TraesCS6D01G123900 chr5B 100.000 42 0 0 5951 5992 479621306 479621347 2.070000e-10 78.7
17 TraesCS6D01G123900 chr7B 95.161 124 6 0 1 124 65109265 65109142 5.460000e-46 196.0
18 TraesCS6D01G123900 chr7B 89.831 59 4 2 5940 5998 118892990 118893046 2.670000e-09 75.0
19 TraesCS6D01G123900 chr2D 95.161 124 6 0 1 124 565522383 565522506 5.460000e-46 196.0
20 TraesCS6D01G123900 chr2D 91.667 60 3 2 5563 5621 651635291 651635349 1.600000e-11 82.4
21 TraesCS6D01G123900 chr2D 95.918 49 0 1 5951 5997 120105996 120105948 2.070000e-10 78.7
22 TraesCS6D01G123900 chr2D 92.593 54 3 1 5951 6003 142662499 142662552 7.430000e-10 76.8
23 TraesCS6D01G123900 chr1B 82.479 234 32 7 551 779 49250428 49250199 5.460000e-46 196.0
24 TraesCS6D01G123900 chr1B 94.118 51 2 1 4795 4845 481275592 481275641 7.430000e-10 76.8
25 TraesCS6D01G123900 chr5A 95.122 123 6 0 2 124 513910732 513910610 1.970000e-45 195.0
26 TraesCS6D01G123900 chr5A 91.228 57 3 2 5951 6006 559514637 559514692 7.430000e-10 76.8
27 TraesCS6D01G123900 chr4D 93.548 124 8 0 1 124 49642529 49642652 1.180000e-42 185.0
28 TraesCS6D01G123900 chr7D 78.351 291 57 6 484 770 616069073 616069361 4.250000e-42 183.0
29 TraesCS6D01G123900 chr7D 90.909 66 4 2 4802 4866 237270768 237270832 3.430000e-13 87.9
30 TraesCS6D01G123900 chr7D 94.444 54 1 2 4800 4853 567660225 567660174 1.600000e-11 82.4
31 TraesCS6D01G123900 chr7D 94.231 52 3 0 5947 5998 156526947 156526998 5.740000e-11 80.5
32 TraesCS6D01G123900 chr7D 91.379 58 4 1 4802 4858 610762747 610762804 2.070000e-10 78.7
33 TraesCS6D01G123900 chr7D 87.931 58 4 2 4094 4150 320265374 320265429 1.610000e-06 65.8
34 TraesCS6D01G123900 chr5D 92.742 124 9 0 1 124 257282314 257282437 5.500000e-41 180.0
35 TraesCS6D01G123900 chr5D 86.792 106 10 3 5507 5612 127276365 127276466 1.570000e-21 115.0
36 TraesCS6D01G123900 chr3B 91.935 124 10 0 1 124 756871458 756871581 2.560000e-39 174.0
37 TraesCS6D01G123900 chr3B 76.667 300 55 10 478 770 757724932 757724641 1.200000e-32 152.0
38 TraesCS6D01G123900 chr3B 78.378 148 29 1 623 770 757722305 757722161 7.380000e-15 93.5
39 TraesCS6D01G123900 chr3B 100.000 45 0 0 5952 5996 487224438 487224394 4.440000e-12 84.2
40 TraesCS6D01G123900 chr3B 96.000 50 2 0 4805 4854 160478875 160478826 1.600000e-11 82.4
41 TraesCS6D01G123900 chr3B 93.617 47 2 1 4796 4842 487221429 487221474 1.240000e-07 69.4
42 TraesCS6D01G123900 chr1D 82.424 165 27 2 3735 3898 473600178 473600015 7.220000e-30 143.0
43 TraesCS6D01G123900 chr1A 85.586 111 12 3 5508 5618 428996667 428996561 5.660000e-21 113.0
44 TraesCS6D01G123900 chrUn 87.912 91 8 2 5522 5612 112187715 112187628 3.410000e-18 104.0
45 TraesCS6D01G123900 chr4B 93.478 46 2 1 4796 4841 561643351 561643395 4.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G123900 chr6D 88875000 88881905 6905 True 12754.000000 12754 100.000000 1 6906 1 chr6D.!!$R1 6905
1 TraesCS6D01G123900 chr6B 169219668 169226652 6984 True 2016.200000 4340 91.882800 128 6906 5 chr6B.!!$R3 6778
2 TraesCS6D01G123900 chr6A 106929038 106936634 7596 True 1267.783333 2126 92.395833 860 6788 6 chr6A.!!$R1 5928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 824 0.033504 GTTGTGAGCCGAAGACCAGA 59.966 55.000 0.00 0.00 0.00 3.86 F
761 825 0.033504 TTGTGAGCCGAAGACCAGAC 59.966 55.000 0.00 0.00 0.00 3.51 F
1323 1399 0.101399 AGCTCAGCGACTGGATAACG 59.899 55.000 6.95 0.00 31.51 3.18 F
1751 1960 0.238289 CGCGTGCATTTTCTCTTGGT 59.762 50.000 0.00 0.00 0.00 3.67 F
3126 3461 1.002544 GGGTAGATAGTGAGCCATGGC 59.997 57.143 30.12 30.12 42.33 4.40 F
4805 6193 1.011968 CGGCGCACAAGCAACTACTA 61.012 55.000 10.83 0.00 42.27 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2148 1.488527 CTAGCGAATCAAGGTACCGC 58.511 55.000 6.18 4.18 45.39 5.68 R
2019 2231 2.336945 TGGTGAGTCCATGATGATGC 57.663 50.000 0.00 0.00 41.93 3.91 R
3313 4661 0.851469 TAGATCTGGCTACTCCCCGT 59.149 55.000 5.18 0.00 0.00 5.28 R
3339 4687 0.466555 AGAGTTAGATCCGCGCCTCT 60.467 55.000 0.00 7.28 0.00 3.69 R
5009 6808 2.040278 ACCACTCCATGTGTGCACTAAT 59.960 45.455 19.41 8.69 44.81 1.73 R
6774 8784 0.384309 CTCCGCGAGTACTTATGGCA 59.616 55.000 8.23 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.883549 GCCAGGCCCTCCTCCATC 61.884 72.222 0.00 0.00 41.93 3.51
29 30 3.554342 CCAGGCCCTCCTCCATCG 61.554 72.222 0.00 0.00 41.93 3.84
30 31 4.247380 CAGGCCCTCCTCCATCGC 62.247 72.222 0.00 0.00 41.93 4.58
31 32 4.804420 AGGCCCTCCTCCATCGCA 62.804 66.667 0.00 0.00 38.72 5.10
32 33 4.247380 GGCCCTCCTCCATCGCAG 62.247 72.222 0.00 0.00 0.00 5.18
33 34 4.925861 GCCCTCCTCCATCGCAGC 62.926 72.222 0.00 0.00 0.00 5.25
34 35 3.473647 CCCTCCTCCATCGCAGCA 61.474 66.667 0.00 0.00 0.00 4.41
35 36 2.586245 CCTCCTCCATCGCAGCAA 59.414 61.111 0.00 0.00 0.00 3.91
36 37 1.523258 CCTCCTCCATCGCAGCAAG 60.523 63.158 0.00 0.00 0.00 4.01
37 38 1.220206 CTCCTCCATCGCAGCAAGT 59.780 57.895 0.00 0.00 0.00 3.16
38 39 0.392193 CTCCTCCATCGCAGCAAGTT 60.392 55.000 0.00 0.00 0.00 2.66
39 40 0.391661 TCCTCCATCGCAGCAAGTTC 60.392 55.000 0.00 0.00 0.00 3.01
40 41 0.392193 CCTCCATCGCAGCAAGTTCT 60.392 55.000 0.00 0.00 0.00 3.01
41 42 0.725686 CTCCATCGCAGCAAGTTCTG 59.274 55.000 0.00 0.00 37.15 3.02
49 50 3.731136 GCAAGTTCTGCGTCCACA 58.269 55.556 0.00 0.00 42.37 4.17
50 51 1.571460 GCAAGTTCTGCGTCCACAG 59.429 57.895 0.00 0.00 42.37 3.66
51 52 1.571460 CAAGTTCTGCGTCCACAGC 59.429 57.895 0.00 0.00 37.59 4.40
52 53 1.956170 AAGTTCTGCGTCCACAGCG 60.956 57.895 0.00 0.00 37.59 5.18
53 54 2.644555 AAGTTCTGCGTCCACAGCGT 62.645 55.000 0.00 0.00 37.59 5.07
54 55 2.355837 TTCTGCGTCCACAGCGTC 60.356 61.111 0.00 0.00 37.59 5.19
55 56 3.145422 TTCTGCGTCCACAGCGTCA 62.145 57.895 0.00 0.00 37.59 4.35
56 57 2.636778 TTCTGCGTCCACAGCGTCAA 62.637 55.000 0.00 0.00 37.59 3.18
57 58 2.943345 CTGCGTCCACAGCGTCAAC 61.943 63.158 0.00 0.00 37.44 3.18
58 59 4.059459 GCGTCCACAGCGTCAACG 62.059 66.667 0.00 0.00 43.27 4.10
69 70 3.955429 CGTCAACGCATCCAAAGAG 57.045 52.632 0.00 0.00 0.00 2.85
70 71 0.443869 CGTCAACGCATCCAAAGAGG 59.556 55.000 0.00 0.00 39.47 3.69
71 72 1.523758 GTCAACGCATCCAAAGAGGT 58.476 50.000 0.00 0.00 39.02 3.85
72 73 2.695359 GTCAACGCATCCAAAGAGGTA 58.305 47.619 0.00 0.00 39.02 3.08
73 74 2.415512 GTCAACGCATCCAAAGAGGTAC 59.584 50.000 0.00 0.00 39.02 3.34
74 75 1.737793 CAACGCATCCAAAGAGGTACC 59.262 52.381 2.73 2.73 39.02 3.34
75 76 1.276622 ACGCATCCAAAGAGGTACCT 58.723 50.000 16.26 16.26 39.02 3.08
76 77 1.066143 ACGCATCCAAAGAGGTACCTG 60.066 52.381 22.10 5.39 39.02 4.00
77 78 1.383523 GCATCCAAAGAGGTACCTGC 58.616 55.000 22.10 11.14 39.02 4.85
78 79 1.340017 GCATCCAAAGAGGTACCTGCA 60.340 52.381 22.10 0.00 39.02 4.41
79 80 2.684927 GCATCCAAAGAGGTACCTGCAT 60.685 50.000 22.10 1.51 39.02 3.96
80 81 2.787473 TCCAAAGAGGTACCTGCATG 57.213 50.000 22.10 14.21 39.02 4.06
81 82 1.098050 CCAAAGAGGTACCTGCATGC 58.902 55.000 22.10 11.82 0.00 4.06
82 83 1.614051 CCAAAGAGGTACCTGCATGCA 60.614 52.381 22.10 21.29 0.00 3.96
83 84 2.372264 CAAAGAGGTACCTGCATGCAT 58.628 47.619 22.10 10.26 0.00 3.96
84 85 2.338577 AAGAGGTACCTGCATGCATC 57.661 50.000 22.10 14.70 0.00 3.91
85 86 0.105593 AGAGGTACCTGCATGCATCG 59.894 55.000 22.10 16.66 0.00 3.84
86 87 0.104855 GAGGTACCTGCATGCATCGA 59.895 55.000 22.10 6.13 0.00 3.59
87 88 0.541392 AGGTACCTGCATGCATCGAA 59.459 50.000 22.97 4.38 0.00 3.71
88 89 0.940126 GGTACCTGCATGCATCGAAG 59.060 55.000 22.97 9.00 0.00 3.79
89 90 1.473257 GGTACCTGCATGCATCGAAGA 60.473 52.381 22.97 0.63 45.75 2.87
90 91 2.487934 GTACCTGCATGCATCGAAGAT 58.512 47.619 22.97 0.00 45.12 2.40
91 92 1.590932 ACCTGCATGCATCGAAGATC 58.409 50.000 22.97 0.00 45.12 2.75
92 93 0.511653 CCTGCATGCATCGAAGATCG 59.488 55.000 22.97 5.79 45.12 3.69
102 103 0.955178 TCGAAGATCGAGGATCCAGC 59.045 55.000 15.82 4.41 44.82 4.85
103 104 0.670706 CGAAGATCGAGGATCCAGCA 59.329 55.000 15.82 0.00 43.74 4.41
104 105 1.601663 CGAAGATCGAGGATCCAGCAC 60.602 57.143 15.82 1.40 43.74 4.40
105 106 1.686052 GAAGATCGAGGATCCAGCACT 59.314 52.381 15.82 7.25 39.66 4.40
106 107 2.666272 AGATCGAGGATCCAGCACTA 57.334 50.000 15.82 0.00 39.66 2.74
107 108 3.168035 AGATCGAGGATCCAGCACTAT 57.832 47.619 15.82 0.08 39.66 2.12
108 109 3.088532 AGATCGAGGATCCAGCACTATC 58.911 50.000 15.82 9.07 39.66 2.08
109 110 2.364972 TCGAGGATCCAGCACTATCA 57.635 50.000 15.82 0.00 0.00 2.15
110 111 1.957177 TCGAGGATCCAGCACTATCAC 59.043 52.381 15.82 0.00 0.00 3.06
111 112 1.335415 CGAGGATCCAGCACTATCACG 60.335 57.143 15.82 0.25 0.00 4.35
112 113 1.957177 GAGGATCCAGCACTATCACGA 59.043 52.381 15.82 0.00 0.00 4.35
113 114 2.362397 GAGGATCCAGCACTATCACGAA 59.638 50.000 15.82 0.00 0.00 3.85
114 115 2.363680 AGGATCCAGCACTATCACGAAG 59.636 50.000 15.82 0.00 0.00 3.79
115 116 2.131183 GATCCAGCACTATCACGAAGC 58.869 52.381 0.00 0.00 0.00 3.86
116 117 0.179137 TCCAGCACTATCACGAAGCG 60.179 55.000 0.00 0.00 0.00 4.68
117 118 1.633171 CAGCACTATCACGAAGCGC 59.367 57.895 0.00 0.00 0.00 5.92
118 119 1.519455 AGCACTATCACGAAGCGCC 60.519 57.895 2.29 0.00 0.00 6.53
119 120 1.809619 GCACTATCACGAAGCGCCA 60.810 57.895 2.29 0.00 0.00 5.69
120 121 1.154205 GCACTATCACGAAGCGCCAT 61.154 55.000 2.29 0.00 0.00 4.40
121 122 0.578683 CACTATCACGAAGCGCCATG 59.421 55.000 2.29 0.00 0.00 3.66
122 123 1.154205 ACTATCACGAAGCGCCATGC 61.154 55.000 2.29 0.00 46.98 4.06
143 144 1.153842 GGTTGTTGGCGCCATAAGC 60.154 57.895 33.25 30.26 38.52 3.09
163 164 8.746751 CATAAGCGTCGTATAAGATCATAATGG 58.253 37.037 0.00 0.00 0.00 3.16
203 205 2.490168 GGCAATGGTATTCCCCGGTATT 60.490 50.000 0.00 0.00 0.00 1.89
260 262 3.124921 GCCCTTTCGCTTGCGCTA 61.125 61.111 9.73 0.00 0.00 4.26
264 266 1.009829 CCTTTCGCTTGCGCTAGATT 58.990 50.000 23.12 0.00 0.00 2.40
270 272 0.727398 GCTTGCGCTAGATTTTCCGT 59.273 50.000 23.12 0.00 0.00 4.69
277 279 2.936498 CGCTAGATTTTCCGTTGGACAT 59.064 45.455 0.00 0.00 0.00 3.06
281 283 5.066505 GCTAGATTTTCCGTTGGACATGATT 59.933 40.000 0.00 0.00 0.00 2.57
285 287 5.828299 TTTTCCGTTGGACATGATTATCC 57.172 39.130 0.00 0.00 35.37 2.59
306 308 1.741706 GATGTGACTGCAAGATGGTGG 59.258 52.381 0.00 0.00 37.43 4.61
313 315 3.157087 ACTGCAAGATGGTGGTTTTAGG 58.843 45.455 0.00 0.00 37.43 2.69
348 350 6.261381 AGGTACTGAAGAAAGATACTCTAGCG 59.739 42.308 0.00 0.00 37.18 4.26
364 366 6.868622 ACTCTAGCGTCATAAAGAGAATTGT 58.131 36.000 5.27 0.00 38.16 2.71
372 374 6.349300 GTCATAAAGAGAATTGTAGCCAGGA 58.651 40.000 0.00 0.00 0.00 3.86
385 387 1.777272 AGCCAGGACAGGAGAGTTTTT 59.223 47.619 0.00 0.00 0.00 1.94
386 388 2.155279 GCCAGGACAGGAGAGTTTTTC 58.845 52.381 0.00 0.00 0.00 2.29
387 389 2.784347 CCAGGACAGGAGAGTTTTTCC 58.216 52.381 0.00 0.00 34.83 3.13
388 390 2.106511 CCAGGACAGGAGAGTTTTTCCA 59.893 50.000 0.00 0.00 37.18 3.53
390 392 2.106684 AGGACAGGAGAGTTTTTCCACC 59.893 50.000 0.00 0.00 37.18 4.61
391 393 2.158667 GGACAGGAGAGTTTTTCCACCA 60.159 50.000 0.00 0.00 37.18 4.17
405 407 7.828717 AGTTTTTCCACCAGTGATTTCATTTTT 59.171 29.630 0.00 0.00 0.00 1.94
440 502 1.075601 TTGGAAAGCTCATGACCCCT 58.924 50.000 0.00 0.00 0.00 4.79
456 518 4.164221 TGACCCCTTATCATTCCTGACTTC 59.836 45.833 0.00 0.00 33.22 3.01
457 519 3.459969 ACCCCTTATCATTCCTGACTTCC 59.540 47.826 0.00 0.00 33.22 3.46
459 521 4.907875 CCCCTTATCATTCCTGACTTCCTA 59.092 45.833 0.00 0.00 33.22 2.94
470 532 8.678199 CATTCCTGACTTCCTATAAACCTTTTC 58.322 37.037 0.00 0.00 0.00 2.29
474 536 9.734984 CCTGACTTCCTATAAACCTTTTCTTTA 57.265 33.333 0.00 0.00 0.00 1.85
539 602 9.602195 TGTACATATACATGCGGAAGCTACCAG 62.602 44.444 0.00 0.00 46.74 4.00
547 610 1.736032 CGGAAGCTACCAGAAAGACCG 60.736 57.143 0.00 0.00 0.00 4.79
548 611 1.405661 GGAAGCTACCAGAAAGACCGG 60.406 57.143 0.00 0.00 0.00 5.28
549 612 0.613777 AAGCTACCAGAAAGACCGGG 59.386 55.000 6.32 0.00 0.00 5.73
578 641 4.232221 CAGATGTCCAGAAAACATTGCAC 58.768 43.478 0.00 0.00 37.47 4.57
586 649 6.478344 GTCCAGAAAACATTGCACAAATAACA 59.522 34.615 0.00 0.00 0.00 2.41
587 650 7.171337 GTCCAGAAAACATTGCACAAATAACAT 59.829 33.333 0.00 0.00 0.00 2.71
588 651 8.363390 TCCAGAAAACATTGCACAAATAACATA 58.637 29.630 0.00 0.00 0.00 2.29
589 652 8.986847 CCAGAAAACATTGCACAAATAACATAA 58.013 29.630 0.00 0.00 0.00 1.90
684 748 2.254350 CCGAGACACGCACGAAGA 59.746 61.111 0.00 0.00 41.07 2.87
688 752 1.256895 CGAGACACGCACGAAGAAAAA 59.743 47.619 0.00 0.00 31.96 1.94
715 779 4.563061 GAAGCACCAGCAAATCAAAATCT 58.437 39.130 0.00 0.00 45.49 2.40
719 783 5.098211 GCACCAGCAAATCAAAATCTAGAC 58.902 41.667 0.00 0.00 41.58 2.59
725 789 4.346129 CAAATCAAAATCTAGACCAGCGC 58.654 43.478 0.00 0.00 0.00 5.92
726 790 2.024176 TCAAAATCTAGACCAGCGCC 57.976 50.000 2.29 0.00 0.00 6.53
727 791 1.277842 TCAAAATCTAGACCAGCGCCA 59.722 47.619 2.29 0.00 0.00 5.69
728 792 2.092968 TCAAAATCTAGACCAGCGCCAT 60.093 45.455 2.29 0.00 0.00 4.40
730 794 3.393089 AAATCTAGACCAGCGCCATAG 57.607 47.619 2.29 0.00 0.00 2.23
731 795 2.002505 ATCTAGACCAGCGCCATAGT 57.997 50.000 2.29 0.00 0.00 2.12
732 796 1.319541 TCTAGACCAGCGCCATAGTC 58.680 55.000 2.29 6.17 0.00 2.59
733 797 1.133761 TCTAGACCAGCGCCATAGTCT 60.134 52.381 19.05 19.05 42.13 3.24
734 798 1.000827 CTAGACCAGCGCCATAGTCTG 60.001 57.143 22.21 12.43 39.80 3.51
749 813 1.699343 GTCTGGTAGACGTTGTGAGC 58.301 55.000 0.00 0.00 35.28 4.26
750 814 0.601558 TCTGGTAGACGTTGTGAGCC 59.398 55.000 0.00 0.00 0.00 4.70
751 815 0.732880 CTGGTAGACGTTGTGAGCCG 60.733 60.000 0.00 0.00 0.00 5.52
752 816 1.174078 TGGTAGACGTTGTGAGCCGA 61.174 55.000 0.00 0.00 0.00 5.54
753 817 0.038892 GGTAGACGTTGTGAGCCGAA 60.039 55.000 0.00 0.00 0.00 4.30
754 818 1.337821 GTAGACGTTGTGAGCCGAAG 58.662 55.000 0.00 0.00 0.00 3.79
755 819 1.068748 GTAGACGTTGTGAGCCGAAGA 60.069 52.381 0.00 0.00 0.00 2.87
756 820 0.318784 AGACGTTGTGAGCCGAAGAC 60.319 55.000 0.00 0.00 0.00 3.01
757 821 1.282930 GACGTTGTGAGCCGAAGACC 61.283 60.000 0.00 0.00 0.00 3.85
758 822 1.300620 CGTTGTGAGCCGAAGACCA 60.301 57.895 0.00 0.00 0.00 4.02
759 823 1.284982 CGTTGTGAGCCGAAGACCAG 61.285 60.000 0.00 0.00 0.00 4.00
760 824 0.033504 GTTGTGAGCCGAAGACCAGA 59.966 55.000 0.00 0.00 0.00 3.86
761 825 0.033504 TTGTGAGCCGAAGACCAGAC 59.966 55.000 0.00 0.00 0.00 3.51
762 826 1.079750 GTGAGCCGAAGACCAGACC 60.080 63.158 0.00 0.00 0.00 3.85
763 827 1.228894 TGAGCCGAAGACCAGACCT 60.229 57.895 0.00 0.00 0.00 3.85
764 828 1.216710 GAGCCGAAGACCAGACCTG 59.783 63.158 0.00 0.00 0.00 4.00
765 829 2.435059 GCCGAAGACCAGACCTGC 60.435 66.667 0.00 0.00 0.00 4.85
766 830 3.059982 CCGAAGACCAGACCTGCA 58.940 61.111 0.00 0.00 0.00 4.41
767 831 1.079543 CCGAAGACCAGACCTGCAG 60.080 63.158 6.78 6.78 0.00 4.41
768 832 1.536073 CCGAAGACCAGACCTGCAGA 61.536 60.000 17.39 0.00 0.00 4.26
769 833 0.318441 CGAAGACCAGACCTGCAGAA 59.682 55.000 17.39 0.00 0.00 3.02
770 834 1.066573 CGAAGACCAGACCTGCAGAAT 60.067 52.381 17.39 1.97 0.00 2.40
771 835 2.166459 CGAAGACCAGACCTGCAGAATA 59.834 50.000 17.39 0.00 0.00 1.75
772 836 3.736433 CGAAGACCAGACCTGCAGAATAG 60.736 52.174 17.39 0.00 0.00 1.73
773 837 3.107402 AGACCAGACCTGCAGAATAGA 57.893 47.619 17.39 0.00 0.00 1.98
774 838 2.763448 AGACCAGACCTGCAGAATAGAC 59.237 50.000 17.39 0.00 0.00 2.59
775 839 2.497675 GACCAGACCTGCAGAATAGACA 59.502 50.000 17.39 0.00 0.00 3.41
776 840 2.234908 ACCAGACCTGCAGAATAGACAC 59.765 50.000 17.39 0.00 0.00 3.67
792 856 8.429641 AGAATAGACACTTTAAACCTTGAGACA 58.570 33.333 0.00 0.00 0.00 3.41
799 863 7.066645 ACACTTTAAACCTTGAGACACCTTAAC 59.933 37.037 0.00 0.00 0.00 2.01
809 873 6.202516 TGAGACACCTTAACAAAGTTTTGG 57.797 37.500 9.22 0.00 42.34 3.28
818 882 3.870633 ACAAAGTTTTGGTTTACCGCA 57.129 38.095 9.22 0.00 42.34 5.69
821 885 4.995487 ACAAAGTTTTGGTTTACCGCAAAA 59.005 33.333 9.22 0.00 42.34 2.44
822 886 5.469084 ACAAAGTTTTGGTTTACCGCAAAAA 59.531 32.000 9.22 0.00 42.34 1.94
823 887 5.533533 AAGTTTTGGTTTACCGCAAAAAC 57.466 34.783 13.86 13.86 38.58 2.43
824 888 4.566987 AGTTTTGGTTTACCGCAAAAACA 58.433 34.783 19.63 0.28 39.71 2.83
825 889 4.995487 AGTTTTGGTTTACCGCAAAAACAA 59.005 33.333 19.63 6.98 42.68 2.83
828 892 5.934935 TTGGTTTACCGCAAAAACAAAAA 57.065 30.435 8.26 0.00 41.73 1.94
938 1002 8.090214 ACATAATCCAAATCCAAAGAACACAAG 58.910 33.333 0.00 0.00 0.00 3.16
993 1069 2.487428 CTCGTCGGAGCTCACCTG 59.513 66.667 17.19 2.36 32.61 4.00
1023 1099 1.146774 CTCTCCTCCTCCCTCATGCTA 59.853 57.143 0.00 0.00 0.00 3.49
1095 1171 2.202837 GATAGAACCGCCGCCGTT 60.203 61.111 0.00 0.00 0.00 4.44
1106 1182 2.329614 CCGCCGTTACCCAAACCAG 61.330 63.158 0.00 0.00 34.33 4.00
1113 1189 2.757980 TTACCCAAACCAGCGCCTCC 62.758 60.000 2.29 0.00 0.00 4.30
1188 1264 4.554036 GCCCAGATCTGCCGGGAC 62.554 72.222 18.67 7.75 43.21 4.46
1281 1357 1.002134 CAAGATTGGCGGTGGAGGT 60.002 57.895 0.00 0.00 0.00 3.85
1323 1399 0.101399 AGCTCAGCGACTGGATAACG 59.899 55.000 6.95 0.00 31.51 3.18
1437 1513 1.003696 CTCACCCCTTTCTTCCTCCAC 59.996 57.143 0.00 0.00 0.00 4.02
1439 1515 1.355720 CACCCCTTTCTTCCTCCACAT 59.644 52.381 0.00 0.00 0.00 3.21
1441 1517 1.341383 CCCCTTTCTTCCTCCACATGG 60.341 57.143 0.00 0.00 0.00 3.66
1442 1518 1.341383 CCCTTTCTTCCTCCACATGGG 60.341 57.143 0.00 0.00 35.41 4.00
1443 1519 1.635487 CCTTTCTTCCTCCACATGGGA 59.365 52.381 0.00 0.00 45.89 4.37
1463 1539 7.350744 TGGGAATTTATCATCAACCATTGAG 57.649 36.000 0.00 0.00 43.98 3.02
1552 1642 2.485426 CAGTCCCACATGCTTACTTGTG 59.515 50.000 0.00 5.39 46.37 3.33
1621 1830 8.375506 TCCAAAAGTGTCATACAAAGAGATAGT 58.624 33.333 0.00 0.00 0.00 2.12
1627 1836 8.410141 AGTGTCATACAAAGAGATAGTAGAAGC 58.590 37.037 0.00 0.00 0.00 3.86
1676 1885 1.578206 GCTGTCTTTTCCCTGGCGAC 61.578 60.000 0.00 0.00 0.00 5.19
1738 1947 2.758770 TTACCTGGTGAGACGCGTGC 62.759 60.000 20.70 9.48 0.00 5.34
1744 1953 0.452784 GGTGAGACGCGTGCATTTTC 60.453 55.000 20.70 0.00 0.00 2.29
1751 1960 0.238289 CGCGTGCATTTTCTCTTGGT 59.762 50.000 0.00 0.00 0.00 3.67
1775 1984 2.525248 CCGATCATGGCAACGGTCG 61.525 63.158 14.07 14.07 40.42 4.79
1800 2009 4.080919 CACTGATAACAGAGATGGTTGGGA 60.081 45.833 7.05 0.00 46.03 4.37
1872 2084 4.849813 ACTGATTCATGGGTGAGATGAA 57.150 40.909 0.00 0.00 42.53 2.57
1936 2148 3.644884 AGACGTCCTTGTAGTGAACAG 57.355 47.619 13.01 0.00 39.87 3.16
2077 2289 3.127533 GGTGCACGAGCCATCCAC 61.128 66.667 11.45 0.00 41.13 4.02
2123 2335 7.882791 TCTTTGAGCTTCCTATACATTTGAACA 59.117 33.333 0.00 0.00 0.00 3.18
2140 2352 3.644265 TGAACAAGACTTGGCTACTACCA 59.356 43.478 19.16 2.92 38.16 3.25
2368 2685 4.161001 GGAATTGATCAAATCACCTTGGCT 59.839 41.667 21.94 0.00 39.39 4.75
2457 2774 2.097110 AGGGGTGTCACAACTACTCA 57.903 50.000 5.12 0.00 0.00 3.41
2503 2821 6.444633 TGAACTCAGAGACGGTAAAACTAAG 58.555 40.000 3.79 0.00 0.00 2.18
2585 2903 5.541953 TGCTGCATCTGATAGTCACTTAT 57.458 39.130 0.00 0.00 0.00 1.73
2831 3149 3.617531 CGGTTTCAGCAGAGAACCATACT 60.618 47.826 17.09 0.00 0.00 2.12
2900 3218 1.275010 TGGTTTAGCTCACGCATCTGA 59.725 47.619 0.00 0.00 39.10 3.27
2937 3255 7.865707 AGAAATAAGTTGTGTTGCTGAACTAG 58.134 34.615 0.00 0.00 32.79 2.57
3009 3327 8.538409 TCATATGTTCATGTAATCATCTTCCG 57.462 34.615 1.90 0.00 31.15 4.30
3050 3368 4.216902 ACGTAAACATAGGGCTGGAAAAAC 59.783 41.667 0.00 0.00 0.00 2.43
3126 3461 1.002544 GGGTAGATAGTGAGCCATGGC 59.997 57.143 30.12 30.12 42.33 4.40
3182 4520 3.986006 GGTGGTGCGACCTCGTCA 61.986 66.667 6.83 0.00 39.58 4.35
3313 4661 1.829096 CATTGGCGCCATCATCCCA 60.829 57.895 33.25 14.56 0.00 4.37
3339 4687 2.690497 GAGTAGCCAGATCTAGTGTGCA 59.310 50.000 0.00 0.00 0.00 4.57
3480 4828 1.142060 TGAGGTGGTTGTTGGATTCGT 59.858 47.619 0.00 0.00 0.00 3.85
3494 4842 2.555199 GATTCGTGAGGTAGCTGCAAT 58.445 47.619 0.00 0.00 0.00 3.56
3549 4897 3.307691 CCTGGTTGGAAGATCAGCTTACA 60.308 47.826 0.00 0.00 45.74 2.41
3818 5190 1.896660 TCGTGCCCTTGTTGAAGGC 60.897 57.895 0.00 0.00 46.89 4.35
3845 5217 3.610677 GCTCAAAGCTAGACTTCGAAGAC 59.389 47.826 31.08 24.36 37.75 3.01
3927 5308 4.080863 CCCTTGTTTGTCTAGGAGTAGCAT 60.081 45.833 0.00 0.00 40.60 3.79
4022 5403 1.337118 TTTTGGCTAGCCTTGGGTTG 58.663 50.000 33.07 0.00 36.94 3.77
4065 5446 2.371910 TGTTCGGCATCGATGTTACA 57.628 45.000 25.47 19.43 45.51 2.41
4136 5517 2.943265 ATGCAGAGGCTGGGGGTT 60.943 61.111 0.00 0.00 41.91 4.11
4538 5923 5.621197 TGATTTAAGTAGCACGCAACATT 57.379 34.783 0.00 0.00 0.00 2.71
4539 5924 5.389778 TGATTTAAGTAGCACGCAACATTG 58.610 37.500 0.00 0.00 0.00 2.82
4805 6193 1.011968 CGGCGCACAAGCAACTACTA 61.012 55.000 10.83 0.00 42.27 1.82
4833 6278 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5026 6839 8.501580 CATTATTCTATTAGTGCACACATGGAG 58.498 37.037 21.04 8.27 0.00 3.86
5083 6896 6.677913 ACTAGTTTAATGCACAAATGGACAC 58.322 36.000 0.00 0.00 0.00 3.67
5093 6906 2.955660 ACAAATGGACACGTGTGGAAAT 59.044 40.909 28.82 10.86 34.19 2.17
5094 6907 3.004315 ACAAATGGACACGTGTGGAAATC 59.996 43.478 28.82 10.30 34.19 2.17
5096 6909 1.877637 TGGACACGTGTGGAAATCAG 58.122 50.000 28.82 0.00 34.19 2.90
5367 7192 1.964223 ACTTTGCTCTCGACCTTCTCA 59.036 47.619 0.00 0.00 0.00 3.27
5394 7219 6.509517 CGTTTTGGGTCTACAATGATATGACG 60.510 42.308 0.00 0.00 0.00 4.35
5543 7368 8.753175 GTTAAATAGTATAGCCAAGAACACTCG 58.247 37.037 0.00 0.00 0.00 4.18
5593 7418 2.356741 GCCAACCTAATAGCCCACTCAA 60.357 50.000 0.00 0.00 0.00 3.02
5594 7419 3.545703 CCAACCTAATAGCCCACTCAAG 58.454 50.000 0.00 0.00 0.00 3.02
5672 7497 4.386867 TCTACAACCCGCTTATCTTCTG 57.613 45.455 0.00 0.00 0.00 3.02
5710 7535 5.630680 GGCAAAAATATAATGTGGCATCTCG 59.369 40.000 0.00 0.00 35.06 4.04
5993 7818 1.776662 TTGGATCGGAGGGAGTACAG 58.223 55.000 0.00 0.00 0.00 2.74
6030 7855 9.643693 CAGTTAAGATTAAATGCTGGAAATTGT 57.356 29.630 0.44 0.00 32.92 2.71
6117 7942 4.163427 AGGAAGTCTGGAGAATGAAGACA 58.837 43.478 4.99 0.00 42.28 3.41
6164 7989 4.201950 GCATGCGAATACCTCACAGATTTT 60.202 41.667 0.00 0.00 0.00 1.82
6209 8034 3.758554 GTCAGGTAATCATGTGTGCCTTT 59.241 43.478 5.53 0.00 0.00 3.11
6268 8097 8.342634 GGTAATCAGCAATATTTGTGTACGAAT 58.657 33.333 0.00 3.22 34.51 3.34
6302 8132 3.587797 ACCGGTGATATTATACTGGCG 57.412 47.619 6.12 0.00 45.32 5.69
6420 8418 0.179084 CCGGCCACATCACTCGTTAT 60.179 55.000 2.24 0.00 0.00 1.89
6448 8446 2.615447 TGGTAGATCCGTAAGCTACACG 59.385 50.000 12.56 12.56 36.97 4.49
6462 8460 0.838608 TACACGGTTTGGTTCCCACT 59.161 50.000 0.00 0.00 30.78 4.00
6506 8504 1.595382 AGTCAGTGCGCTGGAACAC 60.595 57.895 26.23 16.80 42.78 3.32
6520 8518 3.567579 AACACTGCATCCACGGGGG 62.568 63.158 2.42 0.00 38.37 5.40
6774 8784 3.399330 CTGTTACGTTCAGACCACCATT 58.601 45.455 12.94 0.00 35.20 3.16
6789 8799 2.287915 CACCATTGCCATAAGTACTCGC 59.712 50.000 0.00 0.00 0.00 5.03
6790 8800 1.526887 CCATTGCCATAAGTACTCGCG 59.473 52.381 0.00 0.00 0.00 5.87
6804 8830 3.921521 CGCGGAGGGAGTAGTTCT 58.078 61.111 0.00 0.00 46.37 3.01
6805 8831 1.728672 CGCGGAGGGAGTAGTTCTC 59.271 63.158 0.00 0.00 46.37 2.87
6806 8832 1.030488 CGCGGAGGGAGTAGTTCTCA 61.030 60.000 0.00 0.00 46.37 3.27
6807 8833 1.183549 GCGGAGGGAGTAGTTCTCAA 58.816 55.000 0.00 0.00 44.40 3.02
6809 8835 2.448453 CGGAGGGAGTAGTTCTCAACT 58.552 52.381 0.00 0.00 44.40 3.16
6810 8836 2.424246 CGGAGGGAGTAGTTCTCAACTC 59.576 54.545 10.37 10.37 44.40 3.01
6817 8843 4.888917 GAGTAGTTCTCAACTCCTTTGCT 58.111 43.478 0.00 0.00 41.77 3.91
6818 8844 5.297569 AGTAGTTCTCAACTCCTTTGCTT 57.702 39.130 0.00 0.00 41.77 3.91
6819 8845 5.301555 AGTAGTTCTCAACTCCTTTGCTTC 58.698 41.667 0.00 0.00 41.77 3.86
6820 8846 3.134458 AGTTCTCAACTCCTTTGCTTCG 58.866 45.455 0.00 0.00 37.02 3.79
6821 8847 2.169832 TCTCAACTCCTTTGCTTCGG 57.830 50.000 0.00 0.00 34.88 4.30
6822 8848 1.160137 CTCAACTCCTTTGCTTCGGG 58.840 55.000 0.00 0.00 34.88 5.14
6823 8849 0.472471 TCAACTCCTTTGCTTCGGGT 59.528 50.000 0.00 0.00 34.88 5.28
6824 8850 1.695242 TCAACTCCTTTGCTTCGGGTA 59.305 47.619 0.00 0.00 34.88 3.69
6825 8851 2.076863 CAACTCCTTTGCTTCGGGTAG 58.923 52.381 0.00 0.00 0.00 3.18
6826 8852 1.349067 ACTCCTTTGCTTCGGGTAGT 58.651 50.000 0.00 0.00 0.00 2.73
6827 8853 1.002087 ACTCCTTTGCTTCGGGTAGTG 59.998 52.381 0.00 0.00 0.00 2.74
6828 8854 0.321298 TCCTTTGCTTCGGGTAGTGC 60.321 55.000 0.00 0.00 0.00 4.40
6829 8855 0.605319 CCTTTGCTTCGGGTAGTGCA 60.605 55.000 0.00 0.00 0.00 4.57
6830 8856 1.234821 CTTTGCTTCGGGTAGTGCAA 58.765 50.000 0.00 0.00 42.60 4.08
6831 8857 3.405689 TTGCTTCGGGTAGTGCAAA 57.594 47.368 0.00 0.00 41.58 3.68
6832 8858 0.948678 TTGCTTCGGGTAGTGCAAAC 59.051 50.000 0.00 0.00 41.58 2.93
6833 8859 0.179043 TGCTTCGGGTAGTGCAAACA 60.179 50.000 0.00 0.00 32.12 2.83
6834 8860 1.165270 GCTTCGGGTAGTGCAAACAT 58.835 50.000 0.00 0.00 0.00 2.71
6835 8861 1.539827 GCTTCGGGTAGTGCAAACATT 59.460 47.619 0.00 0.00 0.00 2.71
6836 8862 2.414161 GCTTCGGGTAGTGCAAACATTC 60.414 50.000 0.00 0.00 0.00 2.67
6837 8863 1.816074 TCGGGTAGTGCAAACATTCC 58.184 50.000 0.00 0.00 0.00 3.01
6838 8864 0.808755 CGGGTAGTGCAAACATTCCC 59.191 55.000 0.00 0.00 32.81 3.97
6839 8865 1.613255 CGGGTAGTGCAAACATTCCCT 60.613 52.381 0.00 0.00 33.49 4.20
6840 8866 2.092323 GGGTAGTGCAAACATTCCCTC 58.908 52.381 0.00 0.00 33.14 4.30
6841 8867 2.554344 GGGTAGTGCAAACATTCCCTCA 60.554 50.000 0.00 0.00 33.14 3.86
6846 8872 3.642848 AGTGCAAACATTCCCTCAAACAT 59.357 39.130 0.00 0.00 0.00 2.71
6891 8917 2.670509 GCAGCTTGCATCTTTTGTCCTC 60.671 50.000 0.00 0.00 44.26 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.247380 CTGCGATGGAGGAGGGCC 62.247 72.222 0.00 0.00 0.00 5.80
16 17 4.925861 GCTGCGATGGAGGAGGGC 62.926 72.222 0.00 0.00 0.00 5.19
17 18 2.937379 CTTGCTGCGATGGAGGAGGG 62.937 65.000 0.00 0.00 0.00 4.30
18 19 1.523258 CTTGCTGCGATGGAGGAGG 60.523 63.158 0.00 0.00 0.00 4.30
19 20 0.392193 AACTTGCTGCGATGGAGGAG 60.392 55.000 0.00 0.00 0.00 3.69
20 21 0.391661 GAACTTGCTGCGATGGAGGA 60.392 55.000 0.00 0.00 0.00 3.71
21 22 0.392193 AGAACTTGCTGCGATGGAGG 60.392 55.000 0.00 0.00 0.00 4.30
22 23 0.725686 CAGAACTTGCTGCGATGGAG 59.274 55.000 0.00 0.00 0.00 3.86
23 24 2.845019 CAGAACTTGCTGCGATGGA 58.155 52.632 0.00 0.00 0.00 3.41
33 34 1.571460 GCTGTGGACGCAGAACTTG 59.429 57.895 16.39 0.00 38.70 3.16
34 35 1.956170 CGCTGTGGACGCAGAACTT 60.956 57.895 16.39 0.00 38.70 2.66
35 36 2.356313 CGCTGTGGACGCAGAACT 60.356 61.111 16.39 0.00 38.70 3.01
36 37 2.658707 GACGCTGTGGACGCAGAAC 61.659 63.158 16.39 3.46 38.70 3.01
37 38 2.355837 GACGCTGTGGACGCAGAA 60.356 61.111 16.39 0.00 38.70 3.02
38 39 3.145422 TTGACGCTGTGGACGCAGA 62.145 57.895 16.39 0.00 38.70 4.26
39 40 2.661537 TTGACGCTGTGGACGCAG 60.662 61.111 8.45 8.45 39.37 5.18
40 41 2.964925 GTTGACGCTGTGGACGCA 60.965 61.111 0.00 0.00 0.00 5.24
41 42 4.059459 CGTTGACGCTGTGGACGC 62.059 66.667 0.00 0.00 0.00 5.19
51 52 0.443869 CCTCTTTGGATGCGTTGACG 59.556 55.000 0.00 0.00 39.42 4.35
52 53 1.523758 ACCTCTTTGGATGCGTTGAC 58.476 50.000 0.00 0.00 39.71 3.18
53 54 2.614481 GGTACCTCTTTGGATGCGTTGA 60.614 50.000 4.06 0.00 39.71 3.18
54 55 1.737793 GGTACCTCTTTGGATGCGTTG 59.262 52.381 4.06 0.00 39.71 4.10
55 56 1.628846 AGGTACCTCTTTGGATGCGTT 59.371 47.619 9.21 0.00 39.71 4.84
56 57 1.066143 CAGGTACCTCTTTGGATGCGT 60.066 52.381 12.84 0.00 39.71 5.24
57 58 1.656652 CAGGTACCTCTTTGGATGCG 58.343 55.000 12.84 0.00 39.71 4.73
58 59 1.340017 TGCAGGTACCTCTTTGGATGC 60.340 52.381 12.84 11.51 39.71 3.91
59 60 2.787473 TGCAGGTACCTCTTTGGATG 57.213 50.000 12.84 0.00 39.71 3.51
60 61 2.684927 GCATGCAGGTACCTCTTTGGAT 60.685 50.000 12.84 5.69 39.71 3.41
61 62 1.340017 GCATGCAGGTACCTCTTTGGA 60.340 52.381 12.84 3.08 39.71 3.53
62 63 1.098050 GCATGCAGGTACCTCTTTGG 58.902 55.000 12.84 0.95 42.93 3.28
63 64 1.825090 TGCATGCAGGTACCTCTTTG 58.175 50.000 18.46 10.57 0.00 2.77
64 65 2.648059 GATGCATGCAGGTACCTCTTT 58.352 47.619 26.69 4.49 0.00 2.52
65 66 1.473965 CGATGCATGCAGGTACCTCTT 60.474 52.381 26.69 5.33 0.00 2.85
66 67 0.105593 CGATGCATGCAGGTACCTCT 59.894 55.000 26.69 6.16 0.00 3.69
67 68 0.104855 TCGATGCATGCAGGTACCTC 59.895 55.000 26.69 15.91 0.00 3.85
68 69 0.541392 TTCGATGCATGCAGGTACCT 59.459 50.000 26.69 9.21 0.00 3.08
69 70 0.940126 CTTCGATGCATGCAGGTACC 59.060 55.000 26.69 2.73 0.00 3.34
70 71 1.939974 TCTTCGATGCATGCAGGTAC 58.060 50.000 26.69 15.22 0.00 3.34
71 72 2.759191 GATCTTCGATGCATGCAGGTA 58.241 47.619 26.69 12.86 0.00 3.08
72 73 1.590932 GATCTTCGATGCATGCAGGT 58.409 50.000 26.69 10.42 0.00 4.00
73 74 0.511653 CGATCTTCGATGCATGCAGG 59.488 55.000 26.69 19.62 43.74 4.85
74 75 1.494824 TCGATCTTCGATGCATGCAG 58.505 50.000 26.69 13.62 44.82 4.41
75 76 3.665544 TCGATCTTCGATGCATGCA 57.334 47.368 25.04 25.04 44.82 3.96
84 85 0.670706 TGCTGGATCCTCGATCTTCG 59.329 55.000 14.23 0.00 38.91 3.79
85 86 1.686052 AGTGCTGGATCCTCGATCTTC 59.314 52.381 14.23 0.00 38.91 2.87
86 87 1.786937 AGTGCTGGATCCTCGATCTT 58.213 50.000 14.23 0.00 38.91 2.40
87 88 2.666272 TAGTGCTGGATCCTCGATCT 57.334 50.000 14.23 7.65 38.91 2.75
88 89 2.822561 TGATAGTGCTGGATCCTCGATC 59.177 50.000 14.23 11.68 38.25 3.69
89 90 2.560542 GTGATAGTGCTGGATCCTCGAT 59.439 50.000 14.23 3.10 0.00 3.59
90 91 1.957177 GTGATAGTGCTGGATCCTCGA 59.043 52.381 14.23 0.00 0.00 4.04
91 92 1.335415 CGTGATAGTGCTGGATCCTCG 60.335 57.143 14.23 5.26 0.00 4.63
92 93 1.957177 TCGTGATAGTGCTGGATCCTC 59.043 52.381 14.23 5.46 0.00 3.71
93 94 2.073252 TCGTGATAGTGCTGGATCCT 57.927 50.000 14.23 0.00 0.00 3.24
94 95 2.748605 CTTCGTGATAGTGCTGGATCC 58.251 52.381 4.20 4.20 0.00 3.36
95 96 2.131183 GCTTCGTGATAGTGCTGGATC 58.869 52.381 0.00 0.00 0.00 3.36
96 97 1.536922 CGCTTCGTGATAGTGCTGGAT 60.537 52.381 0.00 0.00 0.00 3.41
97 98 0.179137 CGCTTCGTGATAGTGCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
98 99 1.756375 GCGCTTCGTGATAGTGCTGG 61.756 60.000 0.00 0.00 43.84 4.85
99 100 1.633171 GCGCTTCGTGATAGTGCTG 59.367 57.895 0.00 0.00 43.84 4.41
100 101 1.519455 GGCGCTTCGTGATAGTGCT 60.519 57.895 7.64 0.00 45.86 4.40
101 102 1.154205 ATGGCGCTTCGTGATAGTGC 61.154 55.000 7.64 0.00 45.86 4.40
102 103 0.578683 CATGGCGCTTCGTGATAGTG 59.421 55.000 7.64 0.00 0.00 2.74
103 104 1.154205 GCATGGCGCTTCGTGATAGT 61.154 55.000 7.64 0.00 37.77 2.12
104 105 1.566563 GCATGGCGCTTCGTGATAG 59.433 57.895 7.64 0.00 37.77 2.08
105 106 1.887242 GGCATGGCGCTTCGTGATA 60.887 57.895 7.64 0.00 41.91 2.15
106 107 3.204827 GGCATGGCGCTTCGTGAT 61.205 61.111 7.64 0.00 41.91 3.06
107 108 4.393155 AGGCATGGCGCTTCGTGA 62.393 61.111 14.30 0.00 41.91 4.35
108 109 4.170062 CAGGCATGGCGCTTCGTG 62.170 66.667 14.30 4.20 41.91 4.35
122 123 1.247419 TTATGGCGCCAACAACCAGG 61.247 55.000 36.33 0.00 36.78 4.45
123 124 0.171007 CTTATGGCGCCAACAACCAG 59.829 55.000 36.33 18.17 36.78 4.00
124 125 1.872197 GCTTATGGCGCCAACAACCA 61.872 55.000 36.33 8.35 37.99 3.67
125 126 1.153842 GCTTATGGCGCCAACAACC 60.154 57.895 36.33 17.61 0.00 3.77
126 127 4.476361 GCTTATGGCGCCAACAAC 57.524 55.556 36.33 19.92 0.00 3.32
143 144 5.003496 CACGCCATTATGATCTTATACGACG 59.997 44.000 0.00 0.00 0.00 5.12
163 164 0.317519 CGAAGACCCCAAAAACACGC 60.318 55.000 0.00 0.00 0.00 5.34
253 255 1.466950 CCAACGGAAAATCTAGCGCAA 59.533 47.619 11.47 0.00 0.00 4.85
260 262 6.263168 GGATAATCATGTCCAACGGAAAATCT 59.737 38.462 0.00 0.00 36.85 2.40
264 266 3.874543 CGGATAATCATGTCCAACGGAAA 59.125 43.478 1.45 0.00 36.67 3.13
270 272 5.056480 GTCACATCGGATAATCATGTCCAA 58.944 41.667 1.45 0.00 36.67 3.53
277 279 3.817709 TGCAGTCACATCGGATAATCA 57.182 42.857 0.00 0.00 0.00 2.57
281 283 3.493176 CCATCTTGCAGTCACATCGGATA 60.493 47.826 0.00 0.00 0.00 2.59
285 287 1.395954 CACCATCTTGCAGTCACATCG 59.604 52.381 0.00 0.00 0.00 3.84
306 308 5.350640 CAGTACCTGTTCGGATTCCTAAAAC 59.649 44.000 0.30 3.74 36.31 2.43
313 315 4.451629 TCTTCAGTACCTGTTCGGATTC 57.548 45.455 0.00 0.00 36.31 2.52
348 350 6.258947 GTCCTGGCTACAATTCTCTTTATGAC 59.741 42.308 0.00 0.00 0.00 3.06
364 366 2.327325 AAACTCTCCTGTCCTGGCTA 57.673 50.000 0.00 0.00 0.00 3.93
372 374 2.509964 ACTGGTGGAAAAACTCTCCTGT 59.490 45.455 0.00 0.00 33.77 4.00
405 407 5.010617 GCTTTCCAATTCAGAACAACCCTAA 59.989 40.000 0.00 0.00 0.00 2.69
412 414 5.048504 GTCATGAGCTTTCCAATTCAGAACA 60.049 40.000 0.00 0.00 0.00 3.18
425 427 4.803329 ATGATAAGGGGTCATGAGCTTT 57.197 40.909 23.24 18.88 35.12 3.51
440 502 9.225682 AGGTTTATAGGAAGTCAGGAATGATAA 57.774 33.333 0.00 0.00 0.00 1.75
456 518 9.353999 GTGTGCAATAAAGAAAAGGTTTATAGG 57.646 33.333 0.00 0.00 31.27 2.57
457 519 9.906660 TGTGTGCAATAAAGAAAAGGTTTATAG 57.093 29.630 0.00 0.00 31.27 1.31
459 521 9.777297 AATGTGTGCAATAAAGAAAAGGTTTAT 57.223 25.926 0.00 0.00 32.55 1.40
509 572 7.158697 AGCTTCCGCATGTATATGTACAATTA 58.841 34.615 6.39 0.00 43.60 1.40
515 578 4.525100 TGGTAGCTTCCGCATGTATATGTA 59.475 41.667 4.78 0.00 39.10 2.29
519 582 3.227614 TCTGGTAGCTTCCGCATGTATA 58.772 45.455 4.78 0.00 39.10 1.47
521 584 1.480789 TCTGGTAGCTTCCGCATGTA 58.519 50.000 4.78 0.00 39.10 2.29
531 594 0.252103 TCCCGGTCTTTCTGGTAGCT 60.252 55.000 0.00 0.00 40.86 3.32
532 595 0.108281 GTCCCGGTCTTTCTGGTAGC 60.108 60.000 0.00 0.00 40.86 3.58
539 602 1.275291 TCTGTCATGTCCCGGTCTTTC 59.725 52.381 0.00 0.00 0.00 2.62
549 612 4.756642 TGTTTTCTGGACATCTGTCATGTC 59.243 41.667 12.10 6.23 46.47 3.06
616 680 0.755686 TGGTTGTTTGCATGAACCCC 59.244 50.000 15.71 8.93 38.75 4.95
621 685 4.933505 TCAGATTTGGTTGTTTGCATGA 57.066 36.364 0.00 0.00 0.00 3.07
623 687 5.291971 GTCTTCAGATTTGGTTGTTTGCAT 58.708 37.500 0.00 0.00 0.00 3.96
666 730 3.470567 CTTCGTGCGTGTCTCGGC 61.471 66.667 0.00 0.00 40.26 5.54
688 752 2.100584 TGATTTGCTGGTGCTTCGTTTT 59.899 40.909 0.00 0.00 40.48 2.43
691 755 1.317613 TTGATTTGCTGGTGCTTCGT 58.682 45.000 0.00 0.00 40.48 3.85
715 779 1.032794 CAGACTATGGCGCTGGTCTA 58.967 55.000 13.98 0.00 36.99 2.59
726 790 4.663166 CTCACAACGTCTACCAGACTATG 58.337 47.826 4.91 5.90 42.92 2.23
727 791 3.128938 GCTCACAACGTCTACCAGACTAT 59.871 47.826 4.91 0.00 42.92 2.12
728 792 2.486982 GCTCACAACGTCTACCAGACTA 59.513 50.000 4.91 0.00 42.92 2.59
730 794 1.669211 GGCTCACAACGTCTACCAGAC 60.669 57.143 0.00 0.00 41.71 3.51
731 795 0.601558 GGCTCACAACGTCTACCAGA 59.398 55.000 0.00 0.00 0.00 3.86
732 796 0.732880 CGGCTCACAACGTCTACCAG 60.733 60.000 0.00 0.00 0.00 4.00
733 797 1.174078 TCGGCTCACAACGTCTACCA 61.174 55.000 0.00 0.00 0.00 3.25
734 798 0.038892 TTCGGCTCACAACGTCTACC 60.039 55.000 0.00 0.00 0.00 3.18
735 799 1.068748 TCTTCGGCTCACAACGTCTAC 60.069 52.381 0.00 0.00 0.00 2.59
737 801 0.318784 GTCTTCGGCTCACAACGTCT 60.319 55.000 0.00 0.00 0.00 4.18
738 802 1.282930 GGTCTTCGGCTCACAACGTC 61.283 60.000 0.00 0.00 0.00 4.34
740 804 1.284982 CTGGTCTTCGGCTCACAACG 61.285 60.000 0.00 0.00 0.00 4.10
741 805 0.033504 TCTGGTCTTCGGCTCACAAC 59.966 55.000 0.00 0.00 0.00 3.32
742 806 0.033504 GTCTGGTCTTCGGCTCACAA 59.966 55.000 0.00 0.00 0.00 3.33
743 807 1.666011 GTCTGGTCTTCGGCTCACA 59.334 57.895 0.00 0.00 0.00 3.58
744 808 1.079750 GGTCTGGTCTTCGGCTCAC 60.080 63.158 0.00 0.00 0.00 3.51
745 809 1.228894 AGGTCTGGTCTTCGGCTCA 60.229 57.895 0.00 0.00 0.00 4.26
746 810 1.216710 CAGGTCTGGTCTTCGGCTC 59.783 63.158 0.00 0.00 0.00 4.70
747 811 2.948720 GCAGGTCTGGTCTTCGGCT 61.949 63.158 0.00 0.00 0.00 5.52
748 812 2.435059 GCAGGTCTGGTCTTCGGC 60.435 66.667 0.00 0.00 0.00 5.54
749 813 1.079543 CTGCAGGTCTGGTCTTCGG 60.080 63.158 5.57 0.00 0.00 4.30
750 814 0.318441 TTCTGCAGGTCTGGTCTTCG 59.682 55.000 15.13 0.00 0.00 3.79
751 815 2.777832 ATTCTGCAGGTCTGGTCTTC 57.222 50.000 15.13 0.00 0.00 2.87
752 816 3.196685 GTCTATTCTGCAGGTCTGGTCTT 59.803 47.826 15.13 0.00 0.00 3.01
753 817 2.763448 GTCTATTCTGCAGGTCTGGTCT 59.237 50.000 15.13 0.00 0.00 3.85
754 818 2.497675 TGTCTATTCTGCAGGTCTGGTC 59.502 50.000 15.13 0.59 0.00 4.02
755 819 2.234908 GTGTCTATTCTGCAGGTCTGGT 59.765 50.000 15.13 0.00 0.00 4.00
756 820 2.499289 AGTGTCTATTCTGCAGGTCTGG 59.501 50.000 15.13 1.02 0.00 3.86
757 821 3.883830 AGTGTCTATTCTGCAGGTCTG 57.116 47.619 15.13 2.67 0.00 3.51
758 822 4.899352 AAAGTGTCTATTCTGCAGGTCT 57.101 40.909 15.13 1.19 0.00 3.85
759 823 6.128254 GGTTTAAAGTGTCTATTCTGCAGGTC 60.128 42.308 15.13 0.00 0.00 3.85
760 824 5.705905 GGTTTAAAGTGTCTATTCTGCAGGT 59.294 40.000 15.13 5.80 0.00 4.00
761 825 5.940470 AGGTTTAAAGTGTCTATTCTGCAGG 59.060 40.000 15.13 0.00 0.00 4.85
762 826 7.173218 TCAAGGTTTAAAGTGTCTATTCTGCAG 59.827 37.037 7.63 7.63 0.00 4.41
763 827 6.995686 TCAAGGTTTAAAGTGTCTATTCTGCA 59.004 34.615 0.00 0.00 0.00 4.41
764 828 7.387948 TCTCAAGGTTTAAAGTGTCTATTCTGC 59.612 37.037 0.00 0.00 0.00 4.26
765 829 8.713271 GTCTCAAGGTTTAAAGTGTCTATTCTG 58.287 37.037 0.00 0.00 0.00 3.02
766 830 8.429641 TGTCTCAAGGTTTAAAGTGTCTATTCT 58.570 33.333 0.00 0.00 0.00 2.40
767 831 8.496751 GTGTCTCAAGGTTTAAAGTGTCTATTC 58.503 37.037 0.00 0.00 0.00 1.75
768 832 7.444487 GGTGTCTCAAGGTTTAAAGTGTCTATT 59.556 37.037 0.00 0.00 0.00 1.73
769 833 6.935208 GGTGTCTCAAGGTTTAAAGTGTCTAT 59.065 38.462 0.00 0.00 0.00 1.98
770 834 6.099269 AGGTGTCTCAAGGTTTAAAGTGTCTA 59.901 38.462 0.00 0.00 0.00 2.59
771 835 5.104485 AGGTGTCTCAAGGTTTAAAGTGTCT 60.104 40.000 0.00 0.00 0.00 3.41
772 836 5.123936 AGGTGTCTCAAGGTTTAAAGTGTC 58.876 41.667 0.00 0.00 0.00 3.67
773 837 5.112129 AGGTGTCTCAAGGTTTAAAGTGT 57.888 39.130 0.00 0.00 0.00 3.55
774 838 7.066525 TGTTAAGGTGTCTCAAGGTTTAAAGTG 59.933 37.037 0.00 0.00 0.00 3.16
775 839 7.114095 TGTTAAGGTGTCTCAAGGTTTAAAGT 58.886 34.615 0.00 0.00 0.00 2.66
776 840 7.562454 TGTTAAGGTGTCTCAAGGTTTAAAG 57.438 36.000 0.00 0.00 0.00 1.85
792 856 6.331845 CGGTAAACCAAAACTTTGTTAAGGT 58.668 36.000 0.00 0.00 36.45 3.50
799 863 5.532025 TTTTGCGGTAAACCAAAACTTTG 57.468 34.783 0.00 0.00 36.38 2.77
938 1002 2.621070 TGGGTAGAGGATATTCCAGGC 58.379 52.381 0.00 0.00 39.61 4.85
993 1069 0.980231 AGGAGGAGAGCATGGTGGTC 60.980 60.000 0.00 0.00 44.62 4.02
1095 1171 2.349755 GAGGCGCTGGTTTGGGTA 59.650 61.111 7.64 0.00 0.00 3.69
1113 1189 2.674220 GGGCAGGAAGGTGGAGAGG 61.674 68.421 0.00 0.00 0.00 3.69
1299 1375 4.383861 CAGTCGCTGAGCTGCCCA 62.384 66.667 1.78 0.00 32.44 5.36
1323 1399 3.414700 CCGAACAGCAGCACCGAC 61.415 66.667 0.00 0.00 0.00 4.79
1437 1513 7.728148 TCAATGGTTGATGATAAATTCCCATG 58.272 34.615 0.00 0.00 34.08 3.66
1439 1515 6.183360 GCTCAATGGTTGATGATAAATTCCCA 60.183 38.462 0.00 0.00 39.30 4.37
1441 1517 6.921857 CAGCTCAATGGTTGATGATAAATTCC 59.078 38.462 0.00 0.00 39.30 3.01
1442 1518 7.486647 ACAGCTCAATGGTTGATGATAAATTC 58.513 34.615 0.00 0.00 39.30 2.17
1443 1519 7.123098 TGACAGCTCAATGGTTGATGATAAATT 59.877 33.333 0.00 0.00 39.30 1.82
1444 1520 6.604396 TGACAGCTCAATGGTTGATGATAAAT 59.396 34.615 0.00 0.00 39.30 1.40
1446 1522 5.499313 TGACAGCTCAATGGTTGATGATAA 58.501 37.500 0.00 0.00 39.30 1.75
1447 1523 5.101648 TGACAGCTCAATGGTTGATGATA 57.898 39.130 0.00 0.00 39.30 2.15
1448 1524 3.959293 TGACAGCTCAATGGTTGATGAT 58.041 40.909 0.00 0.00 39.30 2.45
1449 1525 3.421919 TGACAGCTCAATGGTTGATGA 57.578 42.857 0.00 0.00 39.30 2.92
1450 1526 4.713824 ATTGACAGCTCAATGGTTGATG 57.286 40.909 0.66 0.00 44.16 3.07
1463 1539 3.484649 CGAAATGCATAGCAATTGACAGC 59.515 43.478 10.34 7.58 43.62 4.40
1552 1642 4.254492 GCGGGGTATTAATCAGGATTCTC 58.746 47.826 0.00 0.00 32.50 2.87
1621 1830 5.714047 CATAATGATGTCCTAGCGCTTCTA 58.286 41.667 18.68 0.00 0.00 2.10
1623 1832 3.124297 GCATAATGATGTCCTAGCGCTTC 59.876 47.826 18.68 6.37 35.30 3.86
1624 1833 3.070018 GCATAATGATGTCCTAGCGCTT 58.930 45.455 18.68 0.00 35.30 4.68
1625 1834 2.301296 AGCATAATGATGTCCTAGCGCT 59.699 45.455 17.26 17.26 35.30 5.92
1626 1835 2.414481 CAGCATAATGATGTCCTAGCGC 59.586 50.000 0.00 0.00 35.30 5.92
1627 1836 3.657634 ACAGCATAATGATGTCCTAGCG 58.342 45.455 0.00 0.00 44.55 4.26
1738 1947 8.607441 TGATCGGATTATACCAAGAGAAAATG 57.393 34.615 0.00 0.00 0.00 2.32
1744 1953 4.872691 GCCATGATCGGATTATACCAAGAG 59.127 45.833 0.00 0.00 0.00 2.85
1751 1960 3.007506 ACCGTTGCCATGATCGGATTATA 59.992 43.478 18.83 0.00 44.86 0.98
1775 1984 3.550437 ACCATCTCTGTTATCAGTGCC 57.450 47.619 0.83 0.00 41.91 5.01
1800 2009 7.309990 CCCTGAATCTTTTATCAACACCAATGT 60.310 37.037 0.00 0.00 42.46 2.71
1848 2060 5.188434 TCATCTCACCCATGAATCAGTTTC 58.812 41.667 0.00 0.00 33.30 2.78
1872 2084 2.691011 GTGGTGTGGTAAAATGTGTGGT 59.309 45.455 0.00 0.00 0.00 4.16
1936 2148 1.488527 CTAGCGAATCAAGGTACCGC 58.511 55.000 6.18 4.18 45.39 5.68
2019 2231 2.336945 TGGTGAGTCCATGATGATGC 57.663 50.000 0.00 0.00 41.93 3.91
2123 2335 4.386711 GTTTGTGGTAGTAGCCAAGTCTT 58.613 43.478 0.00 0.00 40.68 3.01
2368 2685 2.969821 ACATCCTTAACACTTGCCCA 57.030 45.000 0.00 0.00 0.00 5.36
2457 2774 8.751242 GTTCATTTCTAAACTAGACTAGGGAGT 58.249 37.037 14.03 0.00 39.20 3.85
2503 2821 4.062991 CCTGTTACGGATTATGGGTTAGC 58.937 47.826 0.00 0.00 0.00 3.09
2585 2903 8.668510 TGCAACCAAAAGCAATTTAGAATTAA 57.331 26.923 0.00 0.00 37.90 1.40
2937 3255 9.959749 TTGATAAAGTTTTGTAGACAACCATTC 57.040 29.630 0.00 0.00 35.28 2.67
3009 3327 4.489679 ACGTTCAAATCCAAAGAGAAGC 57.510 40.909 0.00 0.00 0.00 3.86
3050 3368 2.224314 GGAGCTTCCGAGTTTTTGAGTG 59.776 50.000 0.00 0.00 0.00 3.51
3102 3437 1.666580 GCTCACTATCTACCCGGCC 59.333 63.158 0.00 0.00 0.00 6.13
3105 3440 1.273606 CCATGGCTCACTATCTACCCG 59.726 57.143 0.00 0.00 0.00 5.28
3126 3461 6.946584 GCGTGTATTTTACGAACTACTCTTTG 59.053 38.462 1.32 0.00 43.82 2.77
3182 4520 1.687493 GCTCCCTAGGTGACAGCCT 60.687 63.158 8.29 1.58 42.43 4.58
3227 4575 1.971167 GCATGAGTTCCGGGTTGCA 60.971 57.895 0.00 0.00 0.00 4.08
3313 4661 0.851469 TAGATCTGGCTACTCCCCGT 59.149 55.000 5.18 0.00 0.00 5.28
3339 4687 0.466555 AGAGTTAGATCCGCGCCTCT 60.467 55.000 0.00 7.28 0.00 3.69
3480 4828 0.894835 TCGTCATTGCAGCTACCTCA 59.105 50.000 0.00 0.00 0.00 3.86
3494 4842 0.927537 CACTTTGCAAGTCGTCGTCA 59.072 50.000 0.00 0.00 40.46 4.35
3549 4897 1.570979 GGATGAAAGGGACCCTTGGAT 59.429 52.381 26.95 19.91 43.92 3.41
3583 4954 1.202371 TCCACGTCGTCATATGCTTCC 60.202 52.381 0.00 0.00 0.00 3.46
3818 5190 2.086054 AGTCTAGCTTTGAGCCAACG 57.914 50.000 0.00 0.00 43.77 4.10
3947 5328 4.553330 ACCACTAACCTATGACAACAGG 57.447 45.455 5.18 5.18 37.97 4.00
4065 5446 2.071778 TTCTTGAAGCCAGGCAAAGT 57.928 45.000 15.80 0.00 0.00 2.66
4538 5923 5.014755 ACCAGGGTTTGAAGATACATTACCA 59.985 40.000 0.00 0.00 31.16 3.25
4539 5924 5.506708 ACCAGGGTTTGAAGATACATTACC 58.493 41.667 0.00 0.00 0.00 2.85
4805 6193 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4833 6278 6.817765 TGTGATTCTCAAAACAATACTCCC 57.182 37.500 0.00 0.00 0.00 4.30
5009 6808 2.040278 ACCACTCCATGTGTGCACTAAT 59.960 45.455 19.41 8.69 44.81 1.73
5026 6839 6.019398 GCAACTTTTTAATGTACCAACACCAC 60.019 38.462 0.00 0.00 38.78 4.16
5083 6896 3.074412 AGTAAAGCCTGATTTCCACACG 58.926 45.455 0.00 0.00 0.00 4.49
5093 6906 5.189928 TGTGAAAAACAGAGTAAAGCCTGA 58.810 37.500 0.00 0.00 33.78 3.86
5094 6907 5.499139 TGTGAAAAACAGAGTAAAGCCTG 57.501 39.130 0.00 0.00 33.78 4.85
5096 6909 6.420903 GGAATTGTGAAAAACAGAGTAAAGCC 59.579 38.462 0.00 0.00 40.74 4.35
5367 7192 3.495434 TCATTGTAGACCCAAAACGGT 57.505 42.857 0.00 0.00 39.49 4.83
5394 7219 2.924290 GCACTCTTACCATCGTCTTGAC 59.076 50.000 0.00 0.00 0.00 3.18
5543 7368 3.181479 TGACGTGACAACTCCATATAGCC 60.181 47.826 0.00 0.00 0.00 3.93
5593 7418 8.794553 AGCGTATAAGTATGACTAACTATTGCT 58.205 33.333 0.00 0.00 0.00 3.91
5594 7419 8.967552 AGCGTATAAGTATGACTAACTATTGC 57.032 34.615 0.00 0.00 0.00 3.56
5672 7497 5.966742 ATTTTTGCCTAGTTGGAGAAGAC 57.033 39.130 0.00 0.00 38.35 3.01
5710 7535 2.770699 ACGACGTAGGCAAGCTATAC 57.229 50.000 0.00 0.00 0.00 1.47
5762 7587 2.484594 CCCAACCGTTTTTCCTGCAAAT 60.485 45.455 0.00 0.00 0.00 2.32
6019 7844 4.874970 AGTTGATGAACACAATTTCCAGC 58.125 39.130 0.00 0.00 34.17 4.85
6030 7855 3.260632 TCTCCCGATCAAGTTGATGAACA 59.739 43.478 22.93 3.89 37.20 3.18
6209 8034 9.643693 GCTTCATCCTTGAAAGAAAAATAATCA 57.356 29.630 0.00 0.00 41.22 2.57
6420 8418 3.825014 GCTTACGGATCTACCACTGGATA 59.175 47.826 0.71 0.00 38.90 2.59
6462 8460 2.708861 AGTCATGGTGTTAGGGTGTTGA 59.291 45.455 0.00 0.00 0.00 3.18
6493 8491 2.518836 GATGCAGTGTTCCAGCGCAC 62.519 60.000 11.47 0.00 35.02 5.34
6549 8547 3.611025 ACCTTCTCCAAATGGGTTTCA 57.389 42.857 0.00 0.00 38.11 2.69
6550 8548 4.663334 AGTACCTTCTCCAAATGGGTTTC 58.337 43.478 0.00 0.00 38.11 2.78
6551 8549 4.741928 AGTACCTTCTCCAAATGGGTTT 57.258 40.909 0.00 0.00 38.11 3.27
6552 8550 4.741928 AAGTACCTTCTCCAAATGGGTT 57.258 40.909 0.00 0.00 38.11 4.11
6553 8551 4.141018 ACAAAGTACCTTCTCCAAATGGGT 60.141 41.667 0.00 0.00 38.11 4.51
6774 8784 0.384309 CTCCGCGAGTACTTATGGCA 59.616 55.000 8.23 0.00 0.00 4.92
6789 8799 2.424246 GAGTTGAGAACTACTCCCTCCG 59.576 54.545 0.00 0.00 43.03 4.63
6804 8830 0.472471 ACCCGAAGCAAAGGAGTTGA 59.528 50.000 0.00 0.00 39.87 3.18
6805 8831 2.076863 CTACCCGAAGCAAAGGAGTTG 58.923 52.381 0.00 0.00 40.50 3.16
6806 8832 1.697982 ACTACCCGAAGCAAAGGAGTT 59.302 47.619 0.00 0.00 0.00 3.01
6807 8833 1.002087 CACTACCCGAAGCAAAGGAGT 59.998 52.381 0.00 0.00 0.00 3.85
6809 8835 0.321298 GCACTACCCGAAGCAAAGGA 60.321 55.000 0.00 0.00 0.00 3.36
6810 8836 0.605319 TGCACTACCCGAAGCAAAGG 60.605 55.000 0.00 0.00 33.48 3.11
6812 8838 3.405689 TTGCACTACCCGAAGCAAA 57.594 47.368 0.00 0.00 43.24 3.68
6813 8839 0.948678 GTTTGCACTACCCGAAGCAA 59.051 50.000 0.00 0.00 44.36 3.91
6814 8840 0.179043 TGTTTGCACTACCCGAAGCA 60.179 50.000 0.00 0.00 34.79 3.91
6815 8841 1.165270 ATGTTTGCACTACCCGAAGC 58.835 50.000 0.00 0.00 0.00 3.86
6816 8842 2.161609 GGAATGTTTGCACTACCCGAAG 59.838 50.000 0.00 0.00 0.00 3.79
6817 8843 2.156098 GGAATGTTTGCACTACCCGAA 58.844 47.619 0.00 0.00 0.00 4.30
6818 8844 1.612199 GGGAATGTTTGCACTACCCGA 60.612 52.381 0.00 0.00 0.00 5.14
6819 8845 0.808755 GGGAATGTTTGCACTACCCG 59.191 55.000 0.00 0.00 0.00 5.28
6820 8846 2.092323 GAGGGAATGTTTGCACTACCC 58.908 52.381 0.00 0.00 35.93 3.69
6821 8847 2.790433 TGAGGGAATGTTTGCACTACC 58.210 47.619 0.00 0.00 0.00 3.18
6822 8848 4.037446 TGTTTGAGGGAATGTTTGCACTAC 59.963 41.667 0.00 0.00 0.00 2.73
6823 8849 4.211125 TGTTTGAGGGAATGTTTGCACTA 58.789 39.130 0.00 0.00 0.00 2.74
6824 8850 3.030291 TGTTTGAGGGAATGTTTGCACT 58.970 40.909 0.00 0.00 0.00 4.40
6825 8851 3.451141 TGTTTGAGGGAATGTTTGCAC 57.549 42.857 0.00 0.00 0.00 4.57
6826 8852 3.896888 AGATGTTTGAGGGAATGTTTGCA 59.103 39.130 0.00 0.00 0.00 4.08
6827 8853 4.488879 GAGATGTTTGAGGGAATGTTTGC 58.511 43.478 0.00 0.00 0.00 3.68
6828 8854 4.523943 TGGAGATGTTTGAGGGAATGTTTG 59.476 41.667 0.00 0.00 0.00 2.93
6829 8855 4.739793 TGGAGATGTTTGAGGGAATGTTT 58.260 39.130 0.00 0.00 0.00 2.83
6830 8856 4.338879 CTGGAGATGTTTGAGGGAATGTT 58.661 43.478 0.00 0.00 0.00 2.71
6831 8857 3.308688 CCTGGAGATGTTTGAGGGAATGT 60.309 47.826 0.00 0.00 0.00 2.71
6832 8858 3.285484 CCTGGAGATGTTTGAGGGAATG 58.715 50.000 0.00 0.00 0.00 2.67
6833 8859 2.243221 CCCTGGAGATGTTTGAGGGAAT 59.757 50.000 0.00 0.00 45.67 3.01
6834 8860 1.635487 CCCTGGAGATGTTTGAGGGAA 59.365 52.381 0.00 0.00 45.67 3.97
6835 8861 1.289160 CCCTGGAGATGTTTGAGGGA 58.711 55.000 0.00 0.00 45.67 4.20
6836 8862 0.257039 CCCCTGGAGATGTTTGAGGG 59.743 60.000 0.00 0.00 42.85 4.30
6837 8863 1.289160 TCCCCTGGAGATGTTTGAGG 58.711 55.000 0.00 0.00 0.00 3.86
6859 8885 0.311790 GCAAGCTGCTGCAACTACAA 59.688 50.000 18.42 0.00 42.17 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.