Multiple sequence alignment - TraesCS6D01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G122900 chr6D 100.000 4389 0 0 1 4389 87465326 87469714 0.000000e+00 8106.0
1 TraesCS6D01G122900 chr6D 92.930 877 50 6 3515 4389 427342343 427341477 0.000000e+00 1266.0
2 TraesCS6D01G122900 chr6D 89.597 298 22 5 439 736 88099321 88099033 1.930000e-98 370.0
3 TraesCS6D01G122900 chr6D 79.630 162 20 8 754 908 88098985 88098830 2.160000e-18 104.0
4 TraesCS6D01G122900 chr6D 86.170 94 10 2 2191 2283 106837825 106837916 1.000000e-16 99.0
5 TraesCS6D01G122900 chr6D 86.517 89 10 1 2196 2284 389976961 389976875 3.610000e-16 97.1
6 TraesCS6D01G122900 chr6A 89.390 1885 98 46 363 2194 105591107 105592942 0.000000e+00 2279.0
7 TraesCS6D01G122900 chr6A 93.445 1251 42 17 2280 3515 105592942 105594167 0.000000e+00 1820.0
8 TraesCS6D01G122900 chr6A 90.909 132 6 4 51 177 105590534 105590664 5.840000e-39 172.0
9 TraesCS6D01G122900 chr6A 100.000 31 0 0 907 937 106072897 106072867 1.700000e-04 58.4
10 TraesCS6D01G122900 chr6B 93.103 1276 59 12 2264 3513 166118948 166120220 0.000000e+00 1842.0
11 TraesCS6D01G122900 chr6B 90.448 1340 56 34 437 1753 166117149 166118439 0.000000e+00 1700.0
12 TraesCS6D01G122900 chr6B 89.819 442 20 5 1798 2216 166118421 166118860 1.070000e-150 544.0
13 TraesCS6D01G122900 chr6B 92.177 294 22 1 438 731 166114695 166114987 8.780000e-112 414.0
14 TraesCS6D01G122900 chr6B 93.939 198 7 5 2 194 166116586 166116783 1.190000e-75 294.0
15 TraesCS6D01G122900 chr2D 95.114 880 35 3 3511 4389 127265387 127266259 0.000000e+00 1380.0
16 TraesCS6D01G122900 chr2D 89.773 88 7 1 2197 2284 473093783 473093698 1.290000e-20 111.0
17 TraesCS6D01G122900 chr7B 93.991 882 47 4 3511 4389 196377877 196376999 0.000000e+00 1330.0
18 TraesCS6D01G122900 chr7B 89.761 293 30 0 443 735 34614061 34614353 4.140000e-100 375.0
19 TraesCS6D01G122900 chr7B 87.234 94 9 2 2191 2283 228115828 228115919 2.160000e-18 104.0
20 TraesCS6D01G122900 chr3D 94.091 880 45 2 3510 4389 522087494 522088366 0.000000e+00 1330.0
21 TraesCS6D01G122900 chr3D 74.648 497 105 12 999 1480 22052357 22051867 2.680000e-47 200.0
22 TraesCS6D01G122900 chr3D 82.192 219 38 1 1909 2126 22048974 22048756 2.080000e-43 187.0
23 TraesCS6D01G122900 chr3D 100.000 38 0 0 2197 2234 386298264 386298227 2.190000e-08 71.3
24 TraesCS6D01G122900 chr4D 93.644 881 43 6 3511 4389 41722405 41721536 0.000000e+00 1304.0
25 TraesCS6D01G122900 chr4D 100.000 41 0 0 2197 2237 5786237 5786197 4.710000e-10 76.8
26 TraesCS6D01G122900 chr4D 97.500 40 1 0 2197 2236 369904258 369904219 7.880000e-08 69.4
27 TraesCS6D01G122900 chr7D 92.994 885 57 3 3506 4389 83807828 83806948 0.000000e+00 1286.0
28 TraesCS6D01G122900 chr7D 93.280 878 42 7 3513 4389 594142265 594141404 0.000000e+00 1279.0
29 TraesCS6D01G122900 chr7D 89.262 298 31 1 439 736 85026173 85026469 5.360000e-99 372.0
30 TraesCS6D01G122900 chr7D 90.805 87 6 1 2197 2283 127000371 127000287 9.980000e-22 115.0
31 TraesCS6D01G122900 chr7D 90.110 91 4 5 2193 2281 549516527 549516440 3.590000e-21 113.0
32 TraesCS6D01G122900 chr7D 89.655 87 7 1 2197 2283 127000287 127000371 4.640000e-20 110.0
33 TraesCS6D01G122900 chr2B 92.404 882 62 3 3510 4389 210703893 210704771 0.000000e+00 1253.0
34 TraesCS6D01G122900 chr2B 89.011 91 7 2 2194 2283 174395561 174395649 4.640000e-20 110.0
35 TraesCS6D01G122900 chr3A 91.714 881 66 6 3513 4389 505014649 505015526 0.000000e+00 1216.0
36 TraesCS6D01G122900 chr3A 73.939 495 112 11 999 1480 31666946 31666456 2.700000e-42 183.0
37 TraesCS6D01G122900 chr5B 81.433 684 71 32 439 1099 587765353 587764703 3.920000e-140 508.0
38 TraesCS6D01G122900 chr5B 81.307 658 67 32 439 1073 587790359 587789735 2.370000e-132 483.0
39 TraesCS6D01G122900 chr5B 91.011 89 6 1 2197 2285 478675855 478675941 7.710000e-23 119.0
40 TraesCS6D01G122900 chr7A 88.487 304 32 3 435 736 86052052 86052354 8.970000e-97 364.0
41 TraesCS6D01G122900 chr7A 86.687 323 38 5 436 754 632379086 632378765 1.940000e-93 353.0
42 TraesCS6D01G122900 chr7A 89.655 87 7 1 2197 2283 127774305 127774221 4.640000e-20 110.0
43 TraesCS6D01G122900 chr7A 89.011 91 3 1 2193 2283 411492947 411493030 6.000000e-19 106.0
44 TraesCS6D01G122900 chr7A 86.170 94 10 2 2191 2283 466945176 466945267 1.000000e-16 99.0
45 TraesCS6D01G122900 chr3B 74.245 497 107 12 999 1480 38868394 38867904 5.790000e-44 189.0
46 TraesCS6D01G122900 chr1D 93.182 88 4 2 2196 2281 208856837 208856924 1.280000e-25 128.0
47 TraesCS6D01G122900 chr1D 92.045 88 4 2 2196 2281 228293219 228293133 2.140000e-23 121.0
48 TraesCS6D01G122900 chr1D 100.000 35 0 0 2197 2231 325490367 325490333 1.020000e-06 65.8
49 TraesCS6D01G122900 chr5D 88.506 87 8 1 2194 2280 29900993 29901077 2.160000e-18 104.0
50 TraesCS6D01G122900 chr2A 88.608 79 9 0 2194 2272 65686321 65686243 3.610000e-16 97.1
51 TraesCS6D01G122900 chr4B 85.227 88 11 1 2197 2284 416642530 416642615 6.050000e-14 89.8
52 TraesCS6D01G122900 chr1A 84.337 83 13 0 1940 2022 580659954 580659872 1.010000e-11 82.4
53 TraesCS6D01G122900 chr1A 93.333 45 2 1 2197 2241 241319538 241319495 1.020000e-06 65.8
54 TraesCS6D01G122900 chr1A 100.000 28 0 0 3054 3081 264215723 264215696 8.000000e-03 52.8
55 TraesCS6D01G122900 chr1B 100.000 28 0 0 3054 3081 302035274 302035301 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G122900 chr6D 87465326 87469714 4388 False 8106.000000 8106 100.0000 1 4389 1 chr6D.!!$F1 4388
1 TraesCS6D01G122900 chr6D 427341477 427342343 866 True 1266.000000 1266 92.9300 3515 4389 1 chr6D.!!$R2 874
2 TraesCS6D01G122900 chr6A 105590534 105594167 3633 False 1423.666667 2279 91.2480 51 3515 3 chr6A.!!$F1 3464
3 TraesCS6D01G122900 chr6B 166114695 166120220 5525 False 958.800000 1842 91.8972 2 3513 5 chr6B.!!$F1 3511
4 TraesCS6D01G122900 chr2D 127265387 127266259 872 False 1380.000000 1380 95.1140 3511 4389 1 chr2D.!!$F1 878
5 TraesCS6D01G122900 chr7B 196376999 196377877 878 True 1330.000000 1330 93.9910 3511 4389 1 chr7B.!!$R1 878
6 TraesCS6D01G122900 chr3D 522087494 522088366 872 False 1330.000000 1330 94.0910 3510 4389 1 chr3D.!!$F1 879
7 TraesCS6D01G122900 chr4D 41721536 41722405 869 True 1304.000000 1304 93.6440 3511 4389 1 chr4D.!!$R2 878
8 TraesCS6D01G122900 chr7D 83806948 83807828 880 True 1286.000000 1286 92.9940 3506 4389 1 chr7D.!!$R1 883
9 TraesCS6D01G122900 chr7D 594141404 594142265 861 True 1279.000000 1279 93.2800 3513 4389 1 chr7D.!!$R4 876
10 TraesCS6D01G122900 chr2B 210703893 210704771 878 False 1253.000000 1253 92.4040 3510 4389 1 chr2B.!!$F2 879
11 TraesCS6D01G122900 chr3A 505014649 505015526 877 False 1216.000000 1216 91.7140 3513 4389 1 chr3A.!!$F1 876
12 TraesCS6D01G122900 chr5B 587764703 587765353 650 True 508.000000 508 81.4330 439 1099 1 chr5B.!!$R1 660
13 TraesCS6D01G122900 chr5B 587789735 587790359 624 True 483.000000 483 81.3070 439 1073 1 chr5B.!!$R2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 3034 0.031994 AAAAACACCACGGCAGCATC 59.968 50.0 0.00 0.0 0.00 3.91 F
2188 4467 0.108615 AGCAGGATCGTTGTCCTTCG 60.109 55.0 4.43 0.0 46.45 3.79 F
2750 5089 0.327924 CCACCCTGACATTGCTACCA 59.672 55.0 0.00 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2773 5112 0.753867 TGAACCTTGTAGCGGTGACA 59.246 50.0 0.0 0.0 34.33 3.58 R
3271 5615 0.396417 CTGTCCTGGAGATCGGAGGT 60.396 60.0 0.0 0.0 0.00 3.85 R
3933 6294 0.976641 TGGTTCGAGAAGATGCAGGT 59.023 50.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 1932 5.410067 AGCATGCACATGTAAAATGTAACC 58.590 37.500 21.98 0.00 40.80 2.85
45 1937 6.753180 TGCACATGTAAAATGTAACCATGTT 58.247 32.000 0.00 0.00 42.41 2.71
72 1964 6.369890 CAGAAAGCAAGAGTAGTAAGCAATCA 59.630 38.462 0.00 0.00 0.00 2.57
73 1965 6.593382 AGAAAGCAAGAGTAGTAAGCAATCAG 59.407 38.462 0.00 0.00 0.00 2.90
75 1967 5.415221 AGCAAGAGTAGTAAGCAATCAGAC 58.585 41.667 0.00 0.00 0.00 3.51
79 1976 7.708752 GCAAGAGTAGTAAGCAATCAGACTAAT 59.291 37.037 0.00 0.00 0.00 1.73
158 2055 6.909909 TGATACATAAGTGCTATACTCGTGG 58.090 40.000 0.00 0.00 39.18 4.94
194 2092 3.636282 AACGGGTTTATGTGAACAAGC 57.364 42.857 0.00 0.00 0.00 4.01
198 2096 3.153919 GGGTTTATGTGAACAAGCTCCA 58.846 45.455 0.00 0.00 0.00 3.86
199 2097 3.191371 GGGTTTATGTGAACAAGCTCCAG 59.809 47.826 0.00 0.00 0.00 3.86
200 2098 3.821033 GGTTTATGTGAACAAGCTCCAGT 59.179 43.478 0.00 0.00 0.00 4.00
201 2099 4.278419 GGTTTATGTGAACAAGCTCCAGTT 59.722 41.667 0.00 0.00 0.00 3.16
202 2100 5.215160 GTTTATGTGAACAAGCTCCAGTTG 58.785 41.667 4.16 0.00 0.00 3.16
203 2101 2.708216 TGTGAACAAGCTCCAGTTGA 57.292 45.000 4.16 0.00 0.00 3.18
204 2102 2.288666 TGTGAACAAGCTCCAGTTGAC 58.711 47.619 8.55 8.55 33.37 3.18
206 2104 2.945668 GTGAACAAGCTCCAGTTGACTT 59.054 45.455 8.32 0.00 30.70 3.01
208 2106 2.717639 ACAAGCTCCAGTTGACTTGT 57.282 45.000 1.58 1.58 45.86 3.16
212 2110 3.004752 AGCTCCAGTTGACTTGTTTGT 57.995 42.857 0.00 0.00 0.00 2.83
213 2111 3.356290 AGCTCCAGTTGACTTGTTTGTT 58.644 40.909 0.00 0.00 0.00 2.83
218 2116 5.007034 TCCAGTTGACTTGTTTGTTCAGAA 58.993 37.500 0.00 0.00 0.00 3.02
219 2117 5.095490 CCAGTTGACTTGTTTGTTCAGAAC 58.905 41.667 6.32 6.32 0.00 3.01
220 2118 5.335583 CCAGTTGACTTGTTTGTTCAGAACA 60.336 40.000 12.24 12.24 40.21 3.18
221 2119 6.324819 CAGTTGACTTGTTTGTTCAGAACAT 58.675 36.000 16.89 0.46 41.79 2.71
224 2122 9.337396 AGTTGACTTGTTTGTTCAGAACATATA 57.663 29.630 16.89 7.87 41.79 0.86
225 2123 9.944663 GTTGACTTGTTTGTTCAGAACATATAA 57.055 29.630 16.89 14.55 41.79 0.98
226 2124 9.944663 TTGACTTGTTTGTTCAGAACATATAAC 57.055 29.630 16.89 17.13 41.79 1.89
247 2212 5.489792 ACTTTGTTCTCCTTCATAGCTGA 57.510 39.130 0.00 0.00 0.00 4.26
265 2261 1.329292 TGAAACAAGTTCAGAACGGCG 59.671 47.619 4.80 4.80 41.47 6.46
280 2276 1.356527 CGGCGGCAAGTACTACCAAC 61.357 60.000 10.53 6.14 0.00 3.77
284 2280 3.528532 GCGGCAAGTACTACCAACTAAT 58.471 45.455 13.69 0.00 0.00 1.73
285 2281 3.937079 GCGGCAAGTACTACCAACTAATT 59.063 43.478 13.69 0.00 0.00 1.40
286 2282 4.393990 GCGGCAAGTACTACCAACTAATTT 59.606 41.667 13.69 0.00 0.00 1.82
300 2296 4.396357 ACTAATTTGGGTCCATCCAACA 57.604 40.909 0.00 0.00 45.48 3.33
301 2297 4.946646 ACTAATTTGGGTCCATCCAACAT 58.053 39.130 0.00 0.00 45.48 2.71
304 2443 0.614415 TTGGGTCCATCCAACATGCC 60.614 55.000 0.00 0.00 41.44 4.40
309 2448 1.474077 GTCCATCCAACATGCCAGTTC 59.526 52.381 0.00 0.00 0.00 3.01
310 2449 0.819582 CCATCCAACATGCCAGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
311 2450 1.548081 CATCCAACATGCCAGTTCCA 58.452 50.000 0.00 0.00 0.00 3.53
336 2475 2.419667 GCAAATCAGCATTGCCTTGTT 58.580 42.857 4.70 0.00 45.73 2.83
339 2478 0.970640 ATCAGCATTGCCTTGTTGCA 59.029 45.000 4.70 0.00 38.84 4.08
340 2479 0.970640 TCAGCATTGCCTTGTTGCAT 59.029 45.000 4.70 0.00 41.70 3.96
343 2482 1.067142 AGCATTGCCTTGTTGCATCTG 60.067 47.619 4.70 0.00 41.70 2.90
344 2483 1.355971 CATTGCCTTGTTGCATCTGC 58.644 50.000 0.00 0.00 41.70 4.26
360 2528 5.952033 GCATCTGCAAAGAGAAGAAGAAAT 58.048 37.500 0.00 0.00 41.59 2.17
361 2529 6.028987 GCATCTGCAAAGAGAAGAAGAAATC 58.971 40.000 0.00 0.00 41.59 2.17
377 2545 5.401531 AGAAATCTCTAAACCGTGCAGTA 57.598 39.130 0.00 0.00 0.00 2.74
380 2548 2.955614 TCTCTAAACCGTGCAGTAAGC 58.044 47.619 0.00 0.00 45.96 3.09
395 2563 4.874966 GCAGTAAGCAAAGATCAGACAGAT 59.125 41.667 0.00 0.00 44.79 2.90
406 2581 8.347771 CAAAGATCAGACAGATTTTCAGAAACA 58.652 33.333 0.00 0.00 37.00 2.83
408 2583 9.730705 AAGATCAGACAGATTTTCAGAAACATA 57.269 29.630 0.00 0.00 37.00 2.29
669 2870 0.252239 TGAGTTCTCCTGCTGCCCTA 60.252 55.000 0.00 0.00 0.00 3.53
717 2918 4.785453 CTCCACCCTCCGCAAGCC 62.785 72.222 0.00 0.00 0.00 4.35
736 2937 3.008704 AGCCAGGTGGTACTAAACGAAAT 59.991 43.478 0.00 0.00 37.57 2.17
746 2947 5.292834 GGTACTAAACGAAATAGCAGGGAAC 59.707 44.000 0.00 0.00 0.00 3.62
806 3031 0.459411 AACAAAAACACCACGGCAGC 60.459 50.000 0.00 0.00 0.00 5.25
807 3032 1.140589 CAAAAACACCACGGCAGCA 59.859 52.632 0.00 0.00 0.00 4.41
808 3033 0.249405 CAAAAACACCACGGCAGCAT 60.249 50.000 0.00 0.00 0.00 3.79
809 3034 0.031994 AAAAACACCACGGCAGCATC 59.968 50.000 0.00 0.00 0.00 3.91
828 3053 2.044946 ATCCTTTCACGGCCCAGC 60.045 61.111 0.00 0.00 0.00 4.85
842 3067 1.017387 CCCAGCATTACGGCTTCTTC 58.983 55.000 0.00 0.00 42.71 2.87
843 3068 1.407437 CCCAGCATTACGGCTTCTTCT 60.407 52.381 0.00 0.00 42.71 2.85
960 3198 1.535444 TCTCCCTTCTCCAACCGCA 60.535 57.895 0.00 0.00 0.00 5.69
1548 3797 1.282875 GAAGCGCCTGTTTGTGACC 59.717 57.895 2.29 0.00 0.00 4.02
1549 3798 2.130073 GAAGCGCCTGTTTGTGACCC 62.130 60.000 2.29 0.00 0.00 4.46
1735 3984 1.059098 TCCAGTCATGTGCTCCAACT 58.941 50.000 0.00 0.00 0.00 3.16
1742 3991 2.234661 TCATGTGCTCCAACTACAGAGG 59.765 50.000 0.00 0.00 0.00 3.69
1780 4036 6.916360 ATTATGTTCCAGACCAAACATGTT 57.084 33.333 4.92 4.92 43.86 2.71
1781 4037 8.303156 CAATTATGTTCCAGACCAAACATGTTA 58.697 33.333 12.39 0.00 43.86 2.41
1782 4038 8.593945 ATTATGTTCCAGACCAAACATGTTAT 57.406 30.769 12.39 0.13 43.86 1.89
1783 4039 9.693739 ATTATGTTCCAGACCAAACATGTTATA 57.306 29.630 12.39 0.00 43.86 0.98
1784 4040 9.693739 TTATGTTCCAGACCAAACATGTTATAT 57.306 29.630 12.39 0.00 43.86 0.86
1785 4041 7.389803 TGTTCCAGACCAAACATGTTATATG 57.610 36.000 12.39 6.64 30.73 1.78
1786 4042 6.127758 TGTTCCAGACCAAACATGTTATATGC 60.128 38.462 12.39 1.12 30.73 3.14
1787 4043 5.504853 TCCAGACCAAACATGTTATATGCA 58.495 37.500 12.39 0.00 0.00 3.96
1788 4044 5.948758 TCCAGACCAAACATGTTATATGCAA 59.051 36.000 12.39 0.00 0.00 4.08
1789 4045 6.606796 TCCAGACCAAACATGTTATATGCAAT 59.393 34.615 12.39 0.00 0.00 3.56
1790 4046 6.698329 CCAGACCAAACATGTTATATGCAATG 59.302 38.462 12.39 3.59 0.00 2.82
1791 4047 6.199531 CAGACCAAACATGTTATATGCAATGC 59.800 38.462 12.39 0.00 0.00 3.56
1792 4048 6.097270 AGACCAAACATGTTATATGCAATGCT 59.903 34.615 12.39 0.00 0.00 3.79
1793 4049 6.642430 ACCAAACATGTTATATGCAATGCTT 58.358 32.000 12.39 2.25 0.00 3.91
1794 4050 7.780064 ACCAAACATGTTATATGCAATGCTTA 58.220 30.769 12.39 4.88 0.00 3.09
1795 4051 7.706179 ACCAAACATGTTATATGCAATGCTTAC 59.294 33.333 12.39 0.00 0.00 2.34
1796 4052 7.922278 CCAAACATGTTATATGCAATGCTTACT 59.078 33.333 12.39 0.00 0.00 2.24
1856 4112 5.221422 TGTTTGGAGCCAAGGTTTGAATTAG 60.221 40.000 1.79 0.00 37.24 1.73
1938 4217 4.720649 ATCTTCGTCGGATCTTCTTTCA 57.279 40.909 0.00 0.00 0.00 2.69
2019 4298 1.146566 GCCCCCTCCATCATCTTCATT 59.853 52.381 0.00 0.00 0.00 2.57
2043 4322 6.457355 TGATGAAATTGATTCTTTGTGTGGG 58.543 36.000 0.00 0.00 38.92 4.61
2052 4331 2.348605 CTTTGTGTGGGCAACGTGGG 62.349 60.000 0.00 0.00 37.60 4.61
2146 4425 5.985530 TCAGACATTGTAGAACACTTGTCAG 59.014 40.000 17.68 12.77 40.86 3.51
2188 4467 0.108615 AGCAGGATCGTTGTCCTTCG 60.109 55.000 4.43 0.00 46.45 3.79
2200 4479 6.623486 TCGTTGTCCTTCGATCAATTTACTA 58.377 36.000 0.00 0.00 0.00 1.82
2206 4485 5.659525 TCCTTCGATCAATTTACTACCTCCA 59.340 40.000 0.00 0.00 0.00 3.86
2208 4487 6.992715 CCTTCGATCAATTTACTACCTCCATT 59.007 38.462 0.00 0.00 0.00 3.16
2216 4495 9.983024 TCAATTTACTACCTCCATTCCAAAATA 57.017 29.630 0.00 0.00 0.00 1.40
2223 4502 7.931948 ACTACCTCCATTCCAAAATATAAGACG 59.068 37.037 0.00 0.00 0.00 4.18
2225 4504 7.116736 ACCTCCATTCCAAAATATAAGACGTT 58.883 34.615 0.00 0.00 0.00 3.99
2226 4505 7.614192 ACCTCCATTCCAAAATATAAGACGTTT 59.386 33.333 0.00 0.00 0.00 3.60
2227 4506 8.466798 CCTCCATTCCAAAATATAAGACGTTTT 58.533 33.333 0.00 0.00 0.00 2.43
2228 4507 9.289303 CTCCATTCCAAAATATAAGACGTTTTG 57.711 33.333 0.83 0.74 40.63 2.44
2234 4513 7.964545 CAAAATATAAGACGTTTTGGTAGGC 57.035 36.000 0.83 0.00 38.51 3.93
2235 4514 7.758495 CAAAATATAAGACGTTTTGGTAGGCT 58.242 34.615 0.83 0.00 38.51 4.58
2236 4515 8.885722 CAAAATATAAGACGTTTTGGTAGGCTA 58.114 33.333 0.83 0.00 38.51 3.93
2237 4516 8.658499 AAATATAAGACGTTTTGGTAGGCTAG 57.342 34.615 0.83 0.00 0.00 3.42
2238 4517 5.672421 ATAAGACGTTTTGGTAGGCTAGT 57.328 39.130 0.83 0.00 0.00 2.57
2239 4518 4.347360 AAGACGTTTTGGTAGGCTAGTT 57.653 40.909 0.00 0.00 0.00 2.24
2240 4519 4.347360 AGACGTTTTGGTAGGCTAGTTT 57.653 40.909 0.00 0.00 0.00 2.66
2241 4520 5.473066 AGACGTTTTGGTAGGCTAGTTTA 57.527 39.130 0.00 0.00 0.00 2.01
2242 4521 6.046290 AGACGTTTTGGTAGGCTAGTTTAT 57.954 37.500 0.00 0.00 0.00 1.40
2244 4523 7.614494 AGACGTTTTGGTAGGCTAGTTTATAA 58.386 34.615 0.00 0.00 0.00 0.98
2245 4524 7.547019 AGACGTTTTGGTAGGCTAGTTTATAAC 59.453 37.037 0.00 0.00 0.00 1.89
2246 4525 6.595326 ACGTTTTGGTAGGCTAGTTTATAACC 59.405 38.462 0.00 0.00 0.00 2.85
2247 4526 6.820152 CGTTTTGGTAGGCTAGTTTATAACCT 59.180 38.462 0.00 0.00 34.42 3.50
2248 4527 7.981225 CGTTTTGGTAGGCTAGTTTATAACCTA 59.019 37.037 0.00 0.00 31.79 3.08
2256 4535 6.820152 AGGCTAGTTTATAACCTACCAAAACG 59.180 38.462 9.61 0.00 35.67 3.60
2257 4536 6.595326 GGCTAGTTTATAACCTACCAAAACGT 59.405 38.462 0.00 0.00 35.67 3.99
2258 4537 7.201556 GGCTAGTTTATAACCTACCAAAACGTC 60.202 40.741 0.00 0.00 35.67 4.34
2259 4538 7.547019 GCTAGTTTATAACCTACCAAAACGTCT 59.453 37.037 0.00 0.00 35.67 4.18
2260 4539 9.428097 CTAGTTTATAACCTACCAAAACGTCTT 57.572 33.333 0.00 0.00 35.67 3.01
2262 4541 9.948964 AGTTTATAACCTACCAAAACGTCTTAT 57.051 29.630 0.00 0.00 35.67 1.73
2278 4597 9.901172 AAACGTCTTATATTTTAGAATGGAGGT 57.099 29.630 0.00 0.00 0.00 3.85
2304 4623 4.764172 AGAATACAGTGGCTCAGATTGTC 58.236 43.478 0.00 0.00 0.00 3.18
2500 4826 3.378512 TGCTCTGGATCAGGTAGACATT 58.621 45.455 0.00 0.00 31.51 2.71
2508 4840 7.987458 TCTGGATCAGGTAGACATTTATCAAAC 59.013 37.037 0.00 0.00 31.51 2.93
2543 4875 4.397420 ACAGTGTGCATATTTTCTGTGGA 58.603 39.130 0.00 0.00 35.32 4.02
2556 4888 6.808008 TTTTCTGTGGAAAAACAAATGCAA 57.192 29.167 0.00 0.00 45.07 4.08
2585 4917 6.426937 ACATCTGTGTTGTGTGTTATCCTTAC 59.573 38.462 0.00 0.00 34.01 2.34
2717 5056 6.959639 ATGAGCTGACCAAAAGAAAACTTA 57.040 33.333 0.00 0.00 0.00 2.24
2736 5075 1.359168 AAGTCAACTCTACCCCACCC 58.641 55.000 0.00 0.00 0.00 4.61
2750 5089 0.327924 CCACCCTGACATTGCTACCA 59.672 55.000 0.00 0.00 0.00 3.25
2773 5112 5.568620 AACTTCAGTCACCCTTAACATCT 57.431 39.130 0.00 0.00 0.00 2.90
2838 5177 3.770040 CATCTCGGCGACACCCCA 61.770 66.667 4.99 0.00 33.26 4.96
2990 5329 5.527951 GGTGTCGAGATACTGATACTTCTCA 59.472 44.000 0.00 0.00 35.43 3.27
3009 5349 1.009675 CTTGCGCGCTTTTGACAGT 60.010 52.632 33.29 0.00 0.00 3.55
3191 5534 5.415701 CCAGGTGAACACTATAAAATGCAGT 59.584 40.000 4.96 0.00 0.00 4.40
3242 5585 3.819368 TGTTCATCTTTTGCTCAGGTGA 58.181 40.909 0.00 0.00 28.99 4.02
3271 5615 1.796017 TGGCGATGTAGATTACCCCA 58.204 50.000 0.00 0.00 0.00 4.96
3503 5848 8.119226 GTCATAGCAATTCTTCTTGTACATGTC 58.881 37.037 0.00 0.00 0.00 3.06
3507 5852 6.148480 AGCAATTCTTCTTGTACATGTCTGTC 59.852 38.462 0.00 0.00 36.79 3.51
3720 6071 1.818363 CATGTCTCATGCCAGCGCT 60.818 57.895 2.64 2.64 35.36 5.92
3763 6122 6.942005 TCAGAAAATATCACCACAGTTCATGT 59.058 34.615 0.00 0.00 45.43 3.21
3775 6134 1.596752 TTCATGTTGGCGCACTCGT 60.597 52.632 10.83 0.00 38.14 4.18
3866 6225 3.952508 TGGTCATGCCGGCACACT 61.953 61.111 35.50 14.65 41.21 3.55
3933 6294 1.698165 GTCGAACTTGAGCATGTCGA 58.302 50.000 0.00 0.00 0.00 4.20
3957 6318 1.153823 ATCTTCTCGAACCACGGCG 60.154 57.895 4.80 4.80 42.82 6.46
4002 6364 2.632028 AGATCCACCTTCATGATCTCCG 59.368 50.000 0.00 0.00 40.88 4.63
4090 6452 1.920610 AGCATCTTGGCTTGCTTCTT 58.079 45.000 0.00 0.00 46.71 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.706962 GCATGCTTAGGAATAAATAGGGGG 59.293 45.833 11.37 0.00 0.00 5.40
1 2 5.183904 GTGCATGCTTAGGAATAAATAGGGG 59.816 44.000 20.33 0.00 0.00 4.79
4 5 7.879070 ACATGTGCATGCTTAGGAATAAATAG 58.121 34.615 20.33 0.00 42.39 1.73
5 6 7.822161 ACATGTGCATGCTTAGGAATAAATA 57.178 32.000 20.33 0.00 42.39 1.40
40 1932 4.999950 ACTACTCTTGCTTTCTGGAACATG 59.000 41.667 0.00 0.00 38.20 3.21
45 1937 4.283467 TGCTTACTACTCTTGCTTTCTGGA 59.717 41.667 0.00 0.00 0.00 3.86
158 2055 5.694231 ACCCGTTTACCATTTTGTAAGTC 57.306 39.130 0.00 0.00 32.63 3.01
194 2092 4.635765 TCTGAACAAACAAGTCAACTGGAG 59.364 41.667 0.00 0.00 0.00 3.86
198 2096 5.957842 TGTTCTGAACAAACAAGTCAACT 57.042 34.783 20.14 0.00 38.72 3.16
199 2097 9.944663 TTATATGTTCTGAACAAACAAGTCAAC 57.055 29.630 25.26 0.00 45.86 3.18
200 2098 9.944663 GTTATATGTTCTGAACAAACAAGTCAA 57.055 29.630 25.26 9.51 45.86 3.18
201 2099 9.337396 AGTTATATGTTCTGAACAAACAAGTCA 57.663 29.630 25.26 0.88 45.86 3.41
218 2116 9.331282 GCTATGAAGGAGAACAAAGTTATATGT 57.669 33.333 0.00 0.00 0.00 2.29
219 2117 9.553064 AGCTATGAAGGAGAACAAAGTTATATG 57.447 33.333 0.00 0.00 0.00 1.78
220 2118 9.553064 CAGCTATGAAGGAGAACAAAGTTATAT 57.447 33.333 0.00 0.00 0.00 0.86
221 2119 8.758829 TCAGCTATGAAGGAGAACAAAGTTATA 58.241 33.333 0.00 0.00 30.61 0.98
224 2122 5.869579 TCAGCTATGAAGGAGAACAAAGTT 58.130 37.500 0.00 0.00 30.61 2.66
225 2123 5.489792 TCAGCTATGAAGGAGAACAAAGT 57.510 39.130 0.00 0.00 30.61 2.66
226 2124 6.205464 TGTTTCAGCTATGAAGGAGAACAAAG 59.795 38.462 0.00 0.00 45.89 2.77
247 2212 0.661020 CCGCCGTTCTGAACTTGTTT 59.339 50.000 17.60 0.00 0.00 2.83
280 2276 4.441913 GCATGTTGGATGGACCCAAATTAG 60.442 45.833 0.00 0.00 46.68 1.73
284 2280 1.265236 GCATGTTGGATGGACCCAAA 58.735 50.000 0.00 0.00 46.68 3.28
285 2281 0.614415 GGCATGTTGGATGGACCCAA 60.614 55.000 0.00 0.00 43.42 4.12
286 2282 1.000233 GGCATGTTGGATGGACCCA 60.000 57.895 0.00 0.00 38.00 4.51
289 2285 1.474077 GAACTGGCATGTTGGATGGAC 59.526 52.381 6.99 0.00 0.00 4.02
294 2290 0.184692 TGTGGAACTGGCATGTTGGA 59.815 50.000 6.99 0.00 38.04 3.53
296 2292 1.001048 CTGTGTGGAACTGGCATGTTG 60.001 52.381 6.99 0.00 38.04 3.33
297 2293 1.321474 CTGTGTGGAACTGGCATGTT 58.679 50.000 0.00 2.63 38.04 2.71
298 2294 1.174712 GCTGTGTGGAACTGGCATGT 61.175 55.000 0.00 0.00 38.04 3.21
300 2296 0.467844 TTGCTGTGTGGAACTGGCAT 60.468 50.000 0.00 0.00 37.78 4.40
301 2297 0.682532 TTTGCTGTGTGGAACTGGCA 60.683 50.000 0.00 0.00 38.04 4.92
304 2443 2.606308 GCTGATTTGCTGTGTGGAACTG 60.606 50.000 0.00 0.00 38.04 3.16
309 2448 2.333926 CAATGCTGATTTGCTGTGTGG 58.666 47.619 0.00 0.00 0.00 4.17
310 2449 1.724623 GCAATGCTGATTTGCTGTGTG 59.275 47.619 0.00 0.00 44.71 3.82
311 2450 1.337447 GGCAATGCTGATTTGCTGTGT 60.337 47.619 4.82 0.00 46.74 3.72
339 2478 7.396418 AGAGATTTCTTCTTCTCTTTGCAGAT 58.604 34.615 0.00 0.00 44.90 2.90
340 2479 6.767456 AGAGATTTCTTCTTCTCTTTGCAGA 58.233 36.000 0.00 0.00 44.90 4.26
343 2482 8.233868 GGTTTAGAGATTTCTTCTTCTCTTTGC 58.766 37.037 7.67 0.16 44.90 3.68
344 2483 8.439286 CGGTTTAGAGATTTCTTCTTCTCTTTG 58.561 37.037 7.67 0.00 44.90 2.77
348 2487 6.183360 GCACGGTTTAGAGATTTCTTCTTCTC 60.183 42.308 0.00 0.00 38.93 2.87
349 2488 5.639931 GCACGGTTTAGAGATTTCTTCTTCT 59.360 40.000 0.00 0.00 33.74 2.85
353 2492 4.691216 ACTGCACGGTTTAGAGATTTCTTC 59.309 41.667 0.00 0.00 34.79 2.87
354 2493 4.642429 ACTGCACGGTTTAGAGATTTCTT 58.358 39.130 0.00 0.00 34.79 2.52
357 2525 4.392138 GCTTACTGCACGGTTTAGAGATTT 59.608 41.667 0.00 0.00 42.31 2.17
360 2528 2.955614 GCTTACTGCACGGTTTAGAGA 58.044 47.619 0.00 0.00 42.31 3.10
377 2545 6.713903 TCTGAAAATCTGTCTGATCTTTGCTT 59.286 34.615 0.00 0.00 33.57 3.91
380 2548 8.347771 TGTTTCTGAAAATCTGTCTGATCTTTG 58.652 33.333 4.09 0.00 33.57 2.77
381 2549 8.455903 TGTTTCTGAAAATCTGTCTGATCTTT 57.544 30.769 4.09 0.00 33.57 2.52
383 2551 9.730705 TTATGTTTCTGAAAATCTGTCTGATCT 57.269 29.630 4.09 0.00 33.57 2.75
438 2631 6.542735 GCACCCCAACCAAAACTAATTTTAAA 59.457 34.615 0.00 0.00 35.79 1.52
669 2870 2.020942 AGGGAGCTATAAAAGGAGGGGT 60.021 50.000 0.00 0.00 0.00 4.95
717 2918 5.172934 TGCTATTTCGTTTAGTACCACCTG 58.827 41.667 0.00 0.00 0.00 4.00
753 2954 2.028484 AAACGAACGAGAGGCGCA 59.972 55.556 10.83 0.00 46.04 6.09
754 2955 2.470286 CAAACGAACGAGAGGCGC 59.530 61.111 0.00 0.00 46.04 6.53
806 3031 1.103398 GGGCCGTGAAAGGATGGATG 61.103 60.000 0.00 0.00 0.00 3.51
807 3032 1.227383 GGGCCGTGAAAGGATGGAT 59.773 57.895 0.00 0.00 0.00 3.41
808 3033 2.196997 CTGGGCCGTGAAAGGATGGA 62.197 60.000 0.00 0.00 0.00 3.41
809 3034 1.750399 CTGGGCCGTGAAAGGATGG 60.750 63.158 0.00 0.00 0.00 3.51
859 3092 0.900421 CCACATGTCAGAGAGGCAGA 59.100 55.000 0.00 0.00 33.74 4.26
863 3096 1.140452 CATCCCCACATGTCAGAGAGG 59.860 57.143 0.00 0.00 0.00 3.69
1130 3379 1.671742 CTGGGGTTGTGCTCGTACT 59.328 57.895 0.00 0.00 0.00 2.73
1497 3746 2.348971 GGCGAAAAGGACGAAGAATCTC 59.651 50.000 0.00 0.00 0.00 2.75
1510 3759 1.398390 CCTCCGAATTGAGGCGAAAAG 59.602 52.381 0.00 0.00 45.13 2.27
1511 3760 1.448985 CCTCCGAATTGAGGCGAAAA 58.551 50.000 0.00 0.00 45.13 2.29
1548 3797 1.786575 CGTGCGACACATTTTGATCGG 60.787 52.381 9.95 0.00 35.15 4.18
1549 3798 1.125930 TCGTGCGACACATTTTGATCG 59.874 47.619 9.95 0.00 37.63 3.69
1735 3984 4.284829 TGTCAATCAATGTGCCTCTGTA 57.715 40.909 0.00 0.00 0.00 2.74
1742 3991 6.812656 TGGAACATAATTGTCAATCAATGTGC 59.187 34.615 19.53 18.14 44.85 4.57
1780 4036 6.707608 CCTCTGTTGAGTAAGCATTGCATATA 59.292 38.462 11.91 0.00 38.61 0.86
1781 4037 5.530171 CCTCTGTTGAGTAAGCATTGCATAT 59.470 40.000 11.91 0.00 38.61 1.78
1782 4038 4.877823 CCTCTGTTGAGTAAGCATTGCATA 59.122 41.667 11.91 0.00 38.61 3.14
1783 4039 3.693085 CCTCTGTTGAGTAAGCATTGCAT 59.307 43.478 11.91 0.71 38.61 3.96
1784 4040 3.076621 CCTCTGTTGAGTAAGCATTGCA 58.923 45.455 11.91 0.00 38.61 4.08
1785 4041 2.159462 GCCTCTGTTGAGTAAGCATTGC 60.159 50.000 0.00 0.00 38.61 3.56
1786 4042 3.076621 TGCCTCTGTTGAGTAAGCATTG 58.923 45.455 0.00 0.00 38.61 2.82
1787 4043 3.077359 GTGCCTCTGTTGAGTAAGCATT 58.923 45.455 0.00 0.00 37.35 3.56
1788 4044 2.038952 TGTGCCTCTGTTGAGTAAGCAT 59.961 45.455 0.00 0.00 37.35 3.79
1789 4045 1.416030 TGTGCCTCTGTTGAGTAAGCA 59.584 47.619 0.00 0.00 38.61 3.91
1790 4046 2.169832 TGTGCCTCTGTTGAGTAAGC 57.830 50.000 0.00 0.00 38.61 3.09
1791 4047 6.992063 ATTAATGTGCCTCTGTTGAGTAAG 57.008 37.500 0.00 0.00 38.61 2.34
1792 4048 7.759489 AAATTAATGTGCCTCTGTTGAGTAA 57.241 32.000 0.00 0.00 38.61 2.24
1793 4049 7.759489 AAAATTAATGTGCCTCTGTTGAGTA 57.241 32.000 0.00 0.00 38.61 2.59
1794 4050 6.655078 AAAATTAATGTGCCTCTGTTGAGT 57.345 33.333 0.00 0.00 38.61 3.41
1795 4051 6.925165 ACAAAAATTAATGTGCCTCTGTTGAG 59.075 34.615 0.00 0.00 39.92 3.02
1796 4052 6.815089 ACAAAAATTAATGTGCCTCTGTTGA 58.185 32.000 0.00 0.00 0.00 3.18
1856 4112 4.019860 AGTGGCAGGATGGTGATGATATAC 60.020 45.833 0.00 0.00 35.86 1.47
1938 4217 1.351017 TCGCTTTCTCCCATCCACTTT 59.649 47.619 0.00 0.00 0.00 2.66
2019 4298 6.457355 CCCACACAAAGAATCAATTTCATCA 58.543 36.000 0.00 0.00 36.75 3.07
2043 4322 0.808755 CATTACCTTCCCCACGTTGC 59.191 55.000 0.00 0.00 0.00 4.17
2052 4331 3.863041 AGACTCGCTTTCATTACCTTCC 58.137 45.455 0.00 0.00 0.00 3.46
2146 4425 7.012044 TGCTAGTTTCTTGTAAAAGGAAGACAC 59.988 37.037 0.00 0.00 31.70 3.67
2154 4433 6.369065 ACGATCCTGCTAGTTTCTTGTAAAAG 59.631 38.462 0.00 0.00 0.00 2.27
2188 4467 8.519799 TTTGGAATGGAGGTAGTAAATTGATC 57.480 34.615 0.00 0.00 0.00 2.92
2200 4479 6.659824 ACGTCTTATATTTTGGAATGGAGGT 58.340 36.000 0.00 0.00 0.00 3.85
2216 4495 5.672421 ACTAGCCTACCAAAACGTCTTAT 57.328 39.130 0.00 0.00 0.00 1.73
2217 4496 5.473066 AACTAGCCTACCAAAACGTCTTA 57.527 39.130 0.00 0.00 0.00 2.10
2218 4497 4.347360 AACTAGCCTACCAAAACGTCTT 57.653 40.909 0.00 0.00 0.00 3.01
2219 4498 4.347360 AAACTAGCCTACCAAAACGTCT 57.653 40.909 0.00 0.00 0.00 4.18
2221 4500 6.595326 GGTTATAAACTAGCCTACCAAAACGT 59.405 38.462 0.00 0.00 0.00 3.99
2223 4502 9.102757 GTAGGTTATAAACTAGCCTACCAAAAC 57.897 37.037 10.59 0.00 43.38 2.43
2229 4508 9.102757 GTTTTGGTAGGTTATAAACTAGCCTAC 57.897 37.037 28.30 21.89 46.51 3.18
2231 4510 6.820152 CGTTTTGGTAGGTTATAAACTAGCCT 59.180 38.462 28.30 14.74 36.99 4.58
2232 4511 6.595326 ACGTTTTGGTAGGTTATAAACTAGCC 59.405 38.462 28.30 21.91 36.99 3.93
2233 4512 7.547019 AGACGTTTTGGTAGGTTATAAACTAGC 59.453 37.037 25.99 25.99 37.99 3.42
2234 4513 8.992835 AGACGTTTTGGTAGGTTATAAACTAG 57.007 34.615 10.59 0.39 0.00 2.57
2236 4515 9.948964 ATAAGACGTTTTGGTAGGTTATAAACT 57.051 29.630 8.37 8.37 0.00 2.66
2268 4587 6.551601 CCACTGTATTCTACTACCTCCATTCT 59.448 42.308 0.00 0.00 0.00 2.40
2270 4589 5.070580 GCCACTGTATTCTACTACCTCCATT 59.929 44.000 0.00 0.00 0.00 3.16
2272 4591 3.958798 GCCACTGTATTCTACTACCTCCA 59.041 47.826 0.00 0.00 0.00 3.86
2278 4597 6.607600 ACAATCTGAGCCACTGTATTCTACTA 59.392 38.462 0.00 0.00 0.00 1.82
2304 4623 2.736144 AGATGCATGTGGTTGCTTTG 57.264 45.000 2.46 0.00 43.18 2.77
2416 4742 2.490509 GTTATGGCCAACACCCTGTAAC 59.509 50.000 10.96 7.75 0.00 2.50
2540 4872 7.171167 CAGATGTACATTGCATTTGTTTTTCCA 59.829 33.333 10.30 0.56 0.00 3.53
2543 4875 7.495279 ACACAGATGTACATTGCATTTGTTTTT 59.505 29.630 10.30 0.00 38.89 1.94
2548 4880 5.921976 ACAACACAGATGTACATTGCATTTG 59.078 36.000 10.30 12.85 38.45 2.32
2556 4888 6.371548 GGATAACACACAACACAGATGTACAT 59.628 38.462 8.43 8.43 38.45 2.29
2585 4917 5.635280 CACAAGTATGACAGGTTCAGTACTG 59.365 44.000 17.17 17.17 37.77 2.74
2717 5056 1.132495 AGGGTGGGGTAGAGTTGACTT 60.132 52.381 0.00 0.00 0.00 3.01
2736 5075 4.516698 ACTGAAGTTTGGTAGCAATGTCAG 59.483 41.667 25.64 25.64 36.80 3.51
2750 5089 5.765182 CAGATGTTAAGGGTGACTGAAGTTT 59.235 40.000 0.00 0.00 0.00 2.66
2773 5112 0.753867 TGAACCTTGTAGCGGTGACA 59.246 50.000 0.00 0.00 34.33 3.58
2838 5177 1.072159 GCTCTTGGTCAGGCTGTGT 59.928 57.895 15.27 0.00 0.00 3.72
2990 5329 1.009675 CTGTCAAAAGCGCGCAAGT 60.010 52.632 35.10 15.54 41.68 3.16
3009 5349 1.939934 CTCAAACAGCACGTCCTTCAA 59.060 47.619 0.00 0.00 0.00 2.69
3173 5516 5.163854 ACGCTGACTGCATTTTATAGTGTTC 60.164 40.000 5.11 0.00 43.06 3.18
3191 5534 4.270834 AGAGAGGTAGAATAACACGCTGA 58.729 43.478 0.00 0.00 0.00 4.26
3242 5585 7.390718 GGTAATCTACATCGCCATAGGAAAAAT 59.609 37.037 0.00 0.00 0.00 1.82
3271 5615 0.396417 CTGTCCTGGAGATCGGAGGT 60.396 60.000 0.00 0.00 0.00 3.85
3503 5848 1.272490 TGGAGTTGCTCTAACCGACAG 59.728 52.381 0.00 0.00 40.24 3.51
3507 5852 1.068474 CGTTGGAGTTGCTCTAACCG 58.932 55.000 16.07 9.78 45.09 4.44
3536 5881 2.202298 CAAATGCGCCGTCCGTTC 60.202 61.111 4.18 0.00 39.71 3.95
3933 6294 0.976641 TGGTTCGAGAAGATGCAGGT 59.023 50.000 0.00 0.00 0.00 4.00
3957 6318 2.027625 CCGTGTCGCCAAGGAAGAC 61.028 63.158 0.00 7.81 42.22 3.01
4002 6364 2.592861 GAGCATGATGACCGGGGC 60.593 66.667 6.32 0.00 0.00 5.80
4029 6391 1.537202 CAAGACCAAGGCGAAAGAAGG 59.463 52.381 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.