Multiple sequence alignment - TraesCS6D01G122600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G122600 chr6D 100.000 4963 0 0 636 5598 87277852 87282814 0.000000e+00 9166.0
1 TraesCS6D01G122600 chr6D 100.000 358 0 0 1 358 87277217 87277574 0.000000e+00 662.0
2 TraesCS6D01G122600 chr6D 83.600 250 36 3 3116 3365 22180094 22180338 4.360000e-56 230.0
3 TraesCS6D01G122600 chr6B 90.426 5066 272 83 636 5583 165329216 165334186 0.000000e+00 6471.0
4 TraesCS6D01G122600 chr6B 91.579 95 7 1 230 324 165329112 165329205 4.550000e-26 130.0
5 TraesCS6D01G122600 chr6A 93.898 3261 129 31 2356 5598 105179943 105183151 0.000000e+00 4855.0
6 TraesCS6D01G122600 chr6A 86.650 1236 90 45 636 1834 105178120 105179317 0.000000e+00 1299.0
7 TraesCS6D01G122600 chr6A 91.682 529 43 1 1830 2357 105179346 105179874 0.000000e+00 732.0
8 TraesCS6D01G122600 chr7B 100.000 29 0 0 5163 5191 277205427 277205455 3.000000e-03 54.7
9 TraesCS6D01G122600 chr5D 100.000 28 0 0 5164 5191 440640142 440640115 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G122600 chr6D 87277217 87282814 5597 False 4914.000000 9166 100.000000 1 5598 2 chr6D.!!$F2 5597
1 TraesCS6D01G122600 chr6B 165329112 165334186 5074 False 3300.500000 6471 91.002500 230 5583 2 chr6B.!!$F1 5353
2 TraesCS6D01G122600 chr6A 105178120 105183151 5031 False 2295.333333 4855 90.743333 636 5598 3 chr6A.!!$F1 4962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.037447 AAGCTGCTGTTCTTCTCCCC 59.963 55.0 1.35 0.00 0.00 4.81 F
1476 1549 0.036022 GGGACTCTGTTGCTTGCTCT 59.964 55.0 0.00 0.00 0.00 4.09 F
1503 1576 0.107017 CCTGGGAATCTGCCATTCGT 60.107 55.0 0.00 0.00 37.20 3.85 F
1757 1838 0.249489 ACTCACCGACTTGCACTGTC 60.249 55.0 8.52 8.52 0.00 3.51 F
3520 3715 0.546122 ATGGCAAAGGCTACCATCGA 59.454 50.0 10.04 0.00 40.14 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1806 0.106708 GGTGAGTTGAGTGTGCAGGA 59.893 55.0 0.00 0.0 0.00 3.86 R
3278 3473 1.156736 CCGTTCCTTCGCTTCATGTT 58.843 50.0 0.00 0.0 0.00 2.71 R
3295 3490 2.472695 TGACCTCCTTTTGATGACCG 57.527 50.0 0.00 0.0 0.00 4.79 R
3675 3870 0.315568 AGACTTCTCGCTCGTTGCTT 59.684 50.0 2.29 0.0 40.11 3.91 R
4700 4898 0.247460 TGCGACAACCTCAGGAGATG 59.753 55.0 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.090692 TGACTTAGTAATTTTTATGTAGTCCGC 57.909 33.333 0.00 0.00 31.00 5.54
28 29 9.090692 GACTTAGTAATTTTTATGTAGTCCGCA 57.909 33.333 0.00 0.00 0.00 5.69
29 30 9.095065 ACTTAGTAATTTTTATGTAGTCCGCAG 57.905 33.333 0.00 0.00 0.00 5.18
30 31 9.095065 CTTAGTAATTTTTATGTAGTCCGCAGT 57.905 33.333 0.00 0.00 0.00 4.40
31 32 7.303634 AGTAATTTTTATGTAGTCCGCAGTG 57.696 36.000 0.00 0.00 0.00 3.66
32 33 4.616181 ATTTTTATGTAGTCCGCAGTGC 57.384 40.909 4.58 4.58 0.00 4.40
63 64 3.418068 GTGCAGCGCCTGTCAGTC 61.418 66.667 2.29 0.00 33.43 3.51
64 65 3.927548 TGCAGCGCCTGTCAGTCA 61.928 61.111 2.29 0.00 33.43 3.41
65 66 2.435586 GCAGCGCCTGTCAGTCAT 60.436 61.111 2.29 0.00 33.43 3.06
66 67 2.747822 GCAGCGCCTGTCAGTCATG 61.748 63.158 2.29 0.00 33.43 3.07
67 68 2.435586 AGCGCCTGTCAGTCATGC 60.436 61.111 2.29 0.00 35.00 4.06
70 71 3.972227 GCCTGTCAGTCATGCGTT 58.028 55.556 0.00 0.00 0.00 4.84
71 72 1.499056 GCCTGTCAGTCATGCGTTG 59.501 57.895 0.00 0.00 0.00 4.10
72 73 1.230635 GCCTGTCAGTCATGCGTTGT 61.231 55.000 0.00 0.00 0.00 3.32
73 74 1.939381 GCCTGTCAGTCATGCGTTGTA 60.939 52.381 0.00 0.00 0.00 2.41
74 75 2.621338 CCTGTCAGTCATGCGTTGTAT 58.379 47.619 0.00 0.00 0.00 2.29
75 76 3.780902 CCTGTCAGTCATGCGTTGTATA 58.219 45.455 0.00 0.00 0.00 1.47
76 77 3.798878 CCTGTCAGTCATGCGTTGTATAG 59.201 47.826 0.00 0.00 0.00 1.31
77 78 4.424626 CTGTCAGTCATGCGTTGTATAGT 58.575 43.478 0.00 0.00 0.00 2.12
78 79 5.449999 CCTGTCAGTCATGCGTTGTATAGTA 60.450 44.000 0.00 0.00 0.00 1.82
79 80 6.144078 TGTCAGTCATGCGTTGTATAGTAT 57.856 37.500 0.00 0.00 0.00 2.12
80 81 7.266922 TGTCAGTCATGCGTTGTATAGTATA 57.733 36.000 0.00 0.00 0.00 1.47
81 82 7.360361 TGTCAGTCATGCGTTGTATAGTATAG 58.640 38.462 0.00 0.00 0.00 1.31
82 83 7.012989 TGTCAGTCATGCGTTGTATAGTATAGT 59.987 37.037 0.00 0.00 0.00 2.12
83 84 7.323895 GTCAGTCATGCGTTGTATAGTATAGTG 59.676 40.741 0.00 0.00 0.00 2.74
84 85 7.012989 TCAGTCATGCGTTGTATAGTATAGTGT 59.987 37.037 0.00 0.00 0.00 3.55
85 86 7.113544 CAGTCATGCGTTGTATAGTATAGTGTG 59.886 40.741 0.00 0.00 0.00 3.82
86 87 6.362551 GTCATGCGTTGTATAGTATAGTGTGG 59.637 42.308 0.00 0.00 0.00 4.17
87 88 4.613944 TGCGTTGTATAGTATAGTGTGGC 58.386 43.478 0.00 0.00 0.00 5.01
88 89 3.667261 GCGTTGTATAGTATAGTGTGGCG 59.333 47.826 0.00 0.00 0.00 5.69
89 90 3.667261 CGTTGTATAGTATAGTGTGGCGC 59.333 47.826 0.00 0.00 0.00 6.53
90 91 3.928727 TGTATAGTATAGTGTGGCGCC 57.071 47.619 22.73 22.73 0.00 6.53
91 92 3.493334 TGTATAGTATAGTGTGGCGCCT 58.507 45.455 29.70 9.99 0.00 5.52
92 93 3.893200 TGTATAGTATAGTGTGGCGCCTT 59.107 43.478 29.70 13.03 0.00 4.35
93 94 4.342951 TGTATAGTATAGTGTGGCGCCTTT 59.657 41.667 29.70 12.66 0.00 3.11
94 95 2.024176 AGTATAGTGTGGCGCCTTTG 57.976 50.000 29.70 0.00 0.00 2.77
95 96 1.278127 AGTATAGTGTGGCGCCTTTGT 59.722 47.619 29.70 12.53 0.00 2.83
96 97 1.396996 GTATAGTGTGGCGCCTTTGTG 59.603 52.381 29.70 0.00 0.00 3.33
97 98 0.250727 ATAGTGTGGCGCCTTTGTGT 60.251 50.000 29.70 9.85 0.00 3.72
98 99 0.882927 TAGTGTGGCGCCTTTGTGTC 60.883 55.000 29.70 10.72 0.00 3.67
99 100 3.276091 TGTGGCGCCTTTGTGTCG 61.276 61.111 29.70 0.00 0.00 4.35
100 101 4.025401 GTGGCGCCTTTGTGTCGG 62.025 66.667 29.70 0.00 0.00 4.79
106 107 3.283684 CCTTTGTGTCGGGCGCAA 61.284 61.111 10.83 4.18 44.83 4.85
107 108 2.051345 CTTTGTGTCGGGCGCAAC 60.051 61.111 10.83 4.62 45.99 4.17
108 109 2.515057 TTTGTGTCGGGCGCAACT 60.515 55.556 10.83 0.00 45.99 3.16
109 110 2.443957 CTTTGTGTCGGGCGCAACTC 62.444 60.000 10.83 5.84 45.99 3.01
110 111 3.741830 TTGTGTCGGGCGCAACTCA 62.742 57.895 10.83 8.55 42.05 3.41
111 112 2.970324 GTGTCGGGCGCAACTCAA 60.970 61.111 10.83 0.00 0.00 3.02
112 113 2.203084 TGTCGGGCGCAACTCAAA 60.203 55.556 10.83 0.00 0.00 2.69
113 114 1.820056 TGTCGGGCGCAACTCAAAA 60.820 52.632 10.83 0.00 0.00 2.44
114 115 1.357334 GTCGGGCGCAACTCAAAAA 59.643 52.632 10.83 0.00 0.00 1.94
115 116 0.660300 GTCGGGCGCAACTCAAAAAG 60.660 55.000 10.83 0.00 0.00 2.27
116 117 1.371635 CGGGCGCAACTCAAAAAGG 60.372 57.895 10.83 0.00 0.00 3.11
117 118 1.739667 GGGCGCAACTCAAAAAGGT 59.260 52.632 10.83 0.00 0.00 3.50
118 119 0.318699 GGGCGCAACTCAAAAAGGTC 60.319 55.000 10.83 0.00 0.00 3.85
119 120 0.383949 GGCGCAACTCAAAAAGGTCA 59.616 50.000 10.83 0.00 0.00 4.02
120 121 1.600413 GGCGCAACTCAAAAAGGTCAG 60.600 52.381 10.83 0.00 0.00 3.51
121 122 1.758783 CGCAACTCAAAAAGGTCAGC 58.241 50.000 0.00 0.00 0.00 4.26
122 123 1.334869 CGCAACTCAAAAAGGTCAGCT 59.665 47.619 0.00 0.00 0.00 4.24
123 124 2.735823 GCAACTCAAAAAGGTCAGCTG 58.264 47.619 7.63 7.63 0.00 4.24
124 125 2.358898 GCAACTCAAAAAGGTCAGCTGA 59.641 45.455 13.74 13.74 0.00 4.26
125 126 3.549625 GCAACTCAAAAAGGTCAGCTGAG 60.550 47.826 18.89 3.30 39.53 3.35
126 127 3.567478 ACTCAAAAAGGTCAGCTGAGT 57.433 42.857 18.89 4.41 41.40 3.41
127 128 3.209410 ACTCAAAAAGGTCAGCTGAGTG 58.791 45.455 18.89 8.68 43.81 3.51
128 129 3.118261 ACTCAAAAAGGTCAGCTGAGTGA 60.118 43.478 18.89 12.32 43.81 3.41
129 130 3.879295 CTCAAAAAGGTCAGCTGAGTGAA 59.121 43.478 18.89 0.00 30.98 3.18
130 131 4.464008 TCAAAAAGGTCAGCTGAGTGAAT 58.536 39.130 18.89 0.57 0.00 2.57
131 132 4.889409 TCAAAAAGGTCAGCTGAGTGAATT 59.111 37.500 18.89 7.40 0.00 2.17
132 133 5.360714 TCAAAAAGGTCAGCTGAGTGAATTT 59.639 36.000 18.89 12.00 0.00 1.82
133 134 5.859205 AAAAGGTCAGCTGAGTGAATTTT 57.141 34.783 18.89 15.64 0.00 1.82
134 135 5.859205 AAAGGTCAGCTGAGTGAATTTTT 57.141 34.783 18.89 7.31 0.00 1.94
160 161 9.844790 TTTAAGAGCAGTTCATTTTGTGATATG 57.155 29.630 0.00 0.00 36.54 1.78
161 162 6.446781 AGAGCAGTTCATTTTGTGATATGG 57.553 37.500 0.00 0.00 36.54 2.74
162 163 5.948162 AGAGCAGTTCATTTTGTGATATGGT 59.052 36.000 0.00 0.00 36.54 3.55
163 164 6.435277 AGAGCAGTTCATTTTGTGATATGGTT 59.565 34.615 0.00 0.00 36.54 3.67
164 165 6.996509 AGCAGTTCATTTTGTGATATGGTTT 58.003 32.000 0.00 0.00 36.54 3.27
165 166 7.444299 AGCAGTTCATTTTGTGATATGGTTTT 58.556 30.769 0.00 0.00 36.54 2.43
166 167 8.584157 AGCAGTTCATTTTGTGATATGGTTTTA 58.416 29.630 0.00 0.00 36.54 1.52
167 168 9.369904 GCAGTTCATTTTGTGATATGGTTTTAT 57.630 29.630 0.00 0.00 36.54 1.40
175 176 9.747898 TTTTGTGATATGGTTTTATCTACAGGT 57.252 29.630 0.00 0.00 31.19 4.00
176 177 9.747898 TTTGTGATATGGTTTTATCTACAGGTT 57.252 29.630 0.00 0.00 31.19 3.50
193 194 9.255304 TCTACAGGTTAAAATTGTCAAATTTGC 57.745 29.630 13.54 9.16 43.63 3.68
194 195 7.258022 ACAGGTTAAAATTGTCAAATTTGCC 57.742 32.000 13.54 2.32 43.63 4.52
195 196 6.262049 ACAGGTTAAAATTGTCAAATTTGCCC 59.738 34.615 13.54 6.98 43.63 5.36
196 197 5.468409 AGGTTAAAATTGTCAAATTTGCCCG 59.532 36.000 13.54 0.00 43.63 6.13
197 198 5.237561 GGTTAAAATTGTCAAATTTGCCCGT 59.762 36.000 13.54 0.00 43.63 5.28
198 199 6.359545 GTTAAAATTGTCAAATTTGCCCGTC 58.640 36.000 13.54 2.54 43.63 4.79
199 200 3.742433 AATTGTCAAATTTGCCCGTCA 57.258 38.095 13.54 4.88 31.76 4.35
200 201 2.500509 TTGTCAAATTTGCCCGTCAC 57.499 45.000 13.54 5.96 0.00 3.67
201 202 1.393603 TGTCAAATTTGCCCGTCACA 58.606 45.000 13.54 8.49 0.00 3.58
202 203 1.066303 TGTCAAATTTGCCCGTCACAC 59.934 47.619 13.54 4.56 0.00 3.82
203 204 0.671251 TCAAATTTGCCCGTCACACC 59.329 50.000 13.54 0.00 0.00 4.16
204 205 0.319469 CAAATTTGCCCGTCACACCC 60.319 55.000 5.01 0.00 0.00 4.61
205 206 1.801309 AAATTTGCCCGTCACACCCG 61.801 55.000 0.00 0.00 0.00 5.28
211 212 4.308458 CCGTCACACCCGCCTGAA 62.308 66.667 0.00 0.00 0.00 3.02
212 213 2.738521 CGTCACACCCGCCTGAAG 60.739 66.667 0.00 0.00 0.00 3.02
213 214 2.426023 GTCACACCCGCCTGAAGT 59.574 61.111 0.00 0.00 0.00 3.01
214 215 1.227853 GTCACACCCGCCTGAAGTT 60.228 57.895 0.00 0.00 0.00 2.66
215 216 1.227823 TCACACCCGCCTGAAGTTG 60.228 57.895 0.00 0.00 0.00 3.16
216 217 1.227823 CACACCCGCCTGAAGTTGA 60.228 57.895 0.00 0.00 0.00 3.18
217 218 0.817634 CACACCCGCCTGAAGTTGAA 60.818 55.000 0.00 0.00 0.00 2.69
218 219 0.106918 ACACCCGCCTGAAGTTGAAA 60.107 50.000 0.00 0.00 0.00 2.69
219 220 1.247567 CACCCGCCTGAAGTTGAAAT 58.752 50.000 0.00 0.00 0.00 2.17
220 221 1.068333 CACCCGCCTGAAGTTGAAATG 60.068 52.381 0.00 0.00 0.00 2.32
221 222 0.527565 CCCGCCTGAAGTTGAAATGG 59.472 55.000 0.00 0.00 0.00 3.16
222 223 1.247567 CCGCCTGAAGTTGAAATGGT 58.752 50.000 0.00 0.00 0.00 3.55
223 224 1.068333 CCGCCTGAAGTTGAAATGGTG 60.068 52.381 0.00 0.00 0.00 4.17
224 225 1.068333 CGCCTGAAGTTGAAATGGTGG 60.068 52.381 0.00 0.00 0.00 4.61
225 226 1.273327 GCCTGAAGTTGAAATGGTGGG 59.727 52.381 0.00 0.00 0.00 4.61
226 227 2.875296 CCTGAAGTTGAAATGGTGGGA 58.125 47.619 0.00 0.00 0.00 4.37
227 228 2.821969 CCTGAAGTTGAAATGGTGGGAG 59.178 50.000 0.00 0.00 0.00 4.30
228 229 2.229784 CTGAAGTTGAAATGGTGGGAGC 59.770 50.000 0.00 0.00 0.00 4.70
231 232 0.541764 GTTGAAATGGTGGGAGCCCA 60.542 55.000 3.58 3.58 45.02 5.36
248 249 1.016627 CCATCCACATGGTAACTGCG 58.983 55.000 0.00 0.00 44.46 5.18
294 295 4.142182 ACGGATGTGCATAAATTTCCAAGG 60.142 41.667 0.00 0.00 0.00 3.61
295 296 4.142182 CGGATGTGCATAAATTTCCAAGGT 60.142 41.667 0.00 0.00 0.00 3.50
296 297 5.351458 GGATGTGCATAAATTTCCAAGGTC 58.649 41.667 0.00 0.00 0.00 3.85
305 306 7.628580 GCATAAATTTCCAAGGTCAGTTACTCC 60.629 40.741 0.00 0.00 0.00 3.85
307 308 1.652947 TCCAAGGTCAGTTACTCCCC 58.347 55.000 0.00 0.00 0.00 4.81
329 330 1.522900 CCCCCTCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
330 331 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
331 332 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
334 335 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
336 337 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
337 338 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
338 339 6.267492 TCTCTCTCTCTCTCTCTCTCTCTA 57.733 45.833 0.00 0.00 0.00 2.43
339 340 6.673583 TCTCTCTCTCTCTCTCTCTCTCTAA 58.326 44.000 0.00 0.00 0.00 2.10
340 341 6.775142 TCTCTCTCTCTCTCTCTCTCTCTAAG 59.225 46.154 0.00 0.00 0.00 2.18
341 342 5.303078 TCTCTCTCTCTCTCTCTCTCTAAGC 59.697 48.000 0.00 0.00 0.00 3.09
342 343 5.211973 TCTCTCTCTCTCTCTCTCTAAGCT 58.788 45.833 0.00 0.00 0.00 3.74
343 344 5.069648 TCTCTCTCTCTCTCTCTCTAAGCTG 59.930 48.000 0.00 0.00 0.00 4.24
344 345 3.808728 TCTCTCTCTCTCTCTAAGCTGC 58.191 50.000 0.00 0.00 0.00 5.25
345 346 3.455910 TCTCTCTCTCTCTCTAAGCTGCT 59.544 47.826 0.00 0.00 0.00 4.24
346 347 3.544684 TCTCTCTCTCTCTAAGCTGCTG 58.455 50.000 1.35 0.00 0.00 4.41
347 348 3.054434 TCTCTCTCTCTCTAAGCTGCTGT 60.054 47.826 1.35 0.00 0.00 4.40
348 349 3.696045 TCTCTCTCTCTAAGCTGCTGTT 58.304 45.455 1.35 0.00 0.00 3.16
349 350 3.694072 TCTCTCTCTCTAAGCTGCTGTTC 59.306 47.826 1.35 0.00 0.00 3.18
350 351 3.696045 TCTCTCTCTAAGCTGCTGTTCT 58.304 45.455 1.35 0.00 0.00 3.01
351 352 4.085733 TCTCTCTCTAAGCTGCTGTTCTT 58.914 43.478 1.35 0.00 0.00 2.52
352 353 4.157656 TCTCTCTCTAAGCTGCTGTTCTTC 59.842 45.833 1.35 0.00 0.00 2.87
353 354 4.085733 TCTCTCTAAGCTGCTGTTCTTCT 58.914 43.478 1.35 0.00 0.00 2.85
354 355 4.157656 TCTCTCTAAGCTGCTGTTCTTCTC 59.842 45.833 1.35 0.00 0.00 2.87
355 356 3.194542 TCTCTAAGCTGCTGTTCTTCTCC 59.805 47.826 1.35 0.00 0.00 3.71
356 357 2.234908 TCTAAGCTGCTGTTCTTCTCCC 59.765 50.000 1.35 0.00 0.00 4.30
357 358 0.037447 AAGCTGCTGTTCTTCTCCCC 59.963 55.000 1.35 0.00 0.00 4.81
679 681 4.133820 CCAAGAAAACCCAACCAATTTCC 58.866 43.478 0.00 0.00 33.35 3.13
680 682 4.141505 CCAAGAAAACCCAACCAATTTCCT 60.142 41.667 0.00 0.00 33.35 3.36
684 686 3.328535 AACCCAACCAATTTCCTCTGT 57.671 42.857 0.00 0.00 0.00 3.41
687 695 1.962807 CCAACCAATTTCCTCTGTGCA 59.037 47.619 0.00 0.00 0.00 4.57
690 698 2.233271 ACCAATTTCCTCTGTGCACAG 58.767 47.619 36.07 36.07 45.08 3.66
696 704 1.670406 CCTCTGTGCACAGCAGGAC 60.670 63.158 36.79 9.11 43.46 3.85
710 718 1.433534 CAGGACGAAGCAAGTCTTCC 58.566 55.000 0.00 3.56 46.60 3.46
713 721 1.673329 GGACGAAGCAAGTCTTCCTCC 60.673 57.143 0.00 6.85 46.60 4.30
827 835 2.746359 CATCTCCATCCCTCCCGC 59.254 66.667 0.00 0.00 0.00 6.13
828 836 1.840650 CATCTCCATCCCTCCCGCT 60.841 63.158 0.00 0.00 0.00 5.52
829 837 1.840650 ATCTCCATCCCTCCCGCTG 60.841 63.158 0.00 0.00 0.00 5.18
830 838 2.611964 ATCTCCATCCCTCCCGCTGT 62.612 60.000 0.00 0.00 0.00 4.40
870 878 2.025793 CCCTTTTCTCCTCCCTTTCTCC 60.026 54.545 0.00 0.00 0.00 3.71
872 880 3.054728 CCTTTTCTCCTCCCTTTCTCCTC 60.055 52.174 0.00 0.00 0.00 3.71
877 885 1.154434 TCCTCCCTTTCTCCTCCCTTT 59.846 52.381 0.00 0.00 0.00 3.11
878 886 1.562008 CCTCCCTTTCTCCTCCCTTTC 59.438 57.143 0.00 0.00 0.00 2.62
879 887 2.556766 CTCCCTTTCTCCTCCCTTTCT 58.443 52.381 0.00 0.00 0.00 2.52
950 977 0.733729 GCGTAGGCGAAGAGAGAGAA 59.266 55.000 0.00 0.00 41.33 2.87
953 1010 2.223157 CGTAGGCGAAGAGAGAGAACAG 60.223 54.545 0.00 0.00 41.33 3.16
1046 1106 2.292292 AGTTCCACAACAAATGGTACGC 59.708 45.455 0.00 0.00 41.15 4.42
1069 1129 2.416923 GGATCCCTCCCTCCTCCCT 61.417 68.421 0.00 0.00 35.28 4.20
1095 1155 1.280710 TCCATCCGGCTCTTGCTTTTA 59.719 47.619 0.00 0.00 39.59 1.52
1098 1158 2.561478 TCCGGCTCTTGCTTTTACTT 57.439 45.000 0.00 0.00 39.59 2.24
1173 1233 1.359848 TCGAGCGCTTGAGGATTTTC 58.640 50.000 23.66 0.00 0.00 2.29
1182 1242 1.651987 TGAGGATTTTCGGCGATGAC 58.348 50.000 11.76 2.81 0.00 3.06
1234 1297 2.667969 GCCGGCATTTGTTTGATTTCTC 59.332 45.455 24.80 0.00 0.00 2.87
1261 1324 2.892425 GGCCGCGGTTCATCAGAG 60.892 66.667 28.70 0.00 0.00 3.35
1356 1425 2.224281 CCTTTTTCCCTCTTGTTTGGCC 60.224 50.000 0.00 0.00 0.00 5.36
1400 1472 0.038251 ATTCGAGTCGCTGTTGCTCA 60.038 50.000 7.92 0.00 36.97 4.26
1453 1526 3.703001 TGGTCTGGGAATCTGTCTTTC 57.297 47.619 0.00 0.00 0.00 2.62
1473 1546 1.973812 GGGGGACTCTGTTGCTTGC 60.974 63.158 0.00 0.00 0.00 4.01
1476 1549 0.036022 GGGACTCTGTTGCTTGCTCT 59.964 55.000 0.00 0.00 0.00 4.09
1477 1550 1.437625 GGACTCTGTTGCTTGCTCTC 58.562 55.000 0.00 0.00 0.00 3.20
1478 1551 1.001860 GGACTCTGTTGCTTGCTCTCT 59.998 52.381 0.00 0.00 0.00 3.10
1479 1552 2.067766 GACTCTGTTGCTTGCTCTCTG 58.932 52.381 0.00 0.00 0.00 3.35
1481 1554 2.302445 ACTCTGTTGCTTGCTCTCTGAT 59.698 45.455 0.00 0.00 0.00 2.90
1482 1555 2.673862 CTCTGTTGCTTGCTCTCTGATG 59.326 50.000 0.00 0.00 0.00 3.07
1483 1556 1.738350 CTGTTGCTTGCTCTCTGATGG 59.262 52.381 0.00 0.00 0.00 3.51
1484 1557 0.450983 GTTGCTTGCTCTCTGATGGC 59.549 55.000 0.00 0.00 0.00 4.40
1488 1561 0.464013 CTTGCTCTCTGATGGCCTGG 60.464 60.000 3.32 0.00 0.00 4.45
1489 1562 1.918467 TTGCTCTCTGATGGCCTGGG 61.918 60.000 3.32 0.00 0.00 4.45
1490 1563 2.068821 GCTCTCTGATGGCCTGGGA 61.069 63.158 3.32 0.00 0.00 4.37
1491 1564 1.630126 GCTCTCTGATGGCCTGGGAA 61.630 60.000 3.32 0.00 0.00 3.97
1492 1565 1.138568 CTCTCTGATGGCCTGGGAAT 58.861 55.000 3.32 0.00 0.00 3.01
1493 1566 1.072015 CTCTCTGATGGCCTGGGAATC 59.928 57.143 3.32 0.00 0.00 2.52
1494 1567 1.138568 CTCTGATGGCCTGGGAATCT 58.861 55.000 3.32 0.00 0.00 2.40
1495 1568 0.841961 TCTGATGGCCTGGGAATCTG 59.158 55.000 3.32 2.29 0.00 2.90
1496 1569 0.822532 CTGATGGCCTGGGAATCTGC 60.823 60.000 3.32 0.00 0.00 4.26
1497 1570 1.530183 GATGGCCTGGGAATCTGCC 60.530 63.158 3.32 0.00 44.27 4.85
1499 1572 2.605299 GGCCTGGGAATCTGCCAT 59.395 61.111 0.00 0.00 43.46 4.40
1500 1573 1.075748 GGCCTGGGAATCTGCCATT 60.076 57.895 0.00 0.00 43.46 3.16
1501 1574 1.111715 GGCCTGGGAATCTGCCATTC 61.112 60.000 0.00 0.00 43.46 2.67
1502 1575 1.450531 GCCTGGGAATCTGCCATTCG 61.451 60.000 0.00 0.00 37.20 3.34
1503 1576 0.107017 CCTGGGAATCTGCCATTCGT 60.107 55.000 0.00 0.00 37.20 3.85
1504 1577 1.019673 CTGGGAATCTGCCATTCGTG 58.980 55.000 0.00 0.00 37.20 4.35
1505 1578 0.617935 TGGGAATCTGCCATTCGTGA 59.382 50.000 0.00 0.00 30.85 4.35
1529 1602 3.003585 TCGATTTGGATGGATCGCATTTG 59.996 43.478 1.20 0.00 43.49 2.32
1530 1603 3.243168 CGATTTGGATGGATCGCATTTGT 60.243 43.478 0.00 0.00 38.71 2.83
1532 1605 5.505489 CGATTTGGATGGATCGCATTTGTTA 60.505 40.000 0.00 0.00 38.71 2.41
1533 1606 5.850557 TTTGGATGGATCGCATTTGTTAT 57.149 34.783 0.00 0.00 0.00 1.89
1534 1607 5.850557 TTGGATGGATCGCATTTGTTATT 57.149 34.783 0.00 0.00 0.00 1.40
1536 1609 3.983344 GGATGGATCGCATTTGTTATTGC 59.017 43.478 0.00 0.00 35.50 3.56
1537 1610 4.261741 GGATGGATCGCATTTGTTATTGCT 60.262 41.667 0.00 0.00 36.71 3.91
1540 1613 3.243643 GGATCGCATTTGTTATTGCTTGC 59.756 43.478 0.00 0.00 36.71 4.01
1638 1719 0.250684 TGGATCTGGTGCGCAAGAAA 60.251 50.000 14.00 0.00 43.02 2.52
1689 1770 3.371063 GTCGCCGACCTCCTCACA 61.371 66.667 5.81 0.00 0.00 3.58
1692 1773 2.027625 CGCCGACCTCCTCACAAAC 61.028 63.158 0.00 0.00 0.00 2.93
1725 1806 2.897972 GCCTTCGGACGGGTACAT 59.102 61.111 2.44 0.00 0.00 2.29
1757 1838 0.249489 ACTCACCGACTTGCACTGTC 60.249 55.000 8.52 8.52 0.00 3.51
1760 1841 1.269723 TCACCGACTTGCACTGTCTAG 59.730 52.381 14.61 9.62 32.70 2.43
1831 1946 9.161684 GCTGCATTTTCTTTTCTTTTGTAAATG 57.838 29.630 0.00 0.00 35.62 2.32
1841 1956 9.599866 CTTTTCTTTTGTAAATGTTTCCTCCTT 57.400 29.630 0.00 0.00 0.00 3.36
1887 2002 1.522668 TTGTGGAGATGAACCAAGCG 58.477 50.000 0.00 0.00 39.22 4.68
1917 2032 4.391405 TGACATGATCGAGCAGTATTGT 57.609 40.909 10.08 8.54 0.00 2.71
1985 2100 2.362077 GCCGATGTTTATGCTGGGATTT 59.638 45.455 0.00 0.00 0.00 2.17
1987 2102 4.037446 GCCGATGTTTATGCTGGGATTTTA 59.963 41.667 0.00 0.00 0.00 1.52
1989 2104 5.977129 CCGATGTTTATGCTGGGATTTTAAC 59.023 40.000 0.00 0.00 0.00 2.01
1990 2105 6.405286 CCGATGTTTATGCTGGGATTTTAACA 60.405 38.462 0.00 0.00 0.00 2.41
1991 2106 6.692681 CGATGTTTATGCTGGGATTTTAACAG 59.307 38.462 0.00 0.00 35.40 3.16
1994 2109 6.945435 TGTTTATGCTGGGATTTTAACAGAGA 59.055 34.615 0.00 0.00 34.21 3.10
1995 2110 7.450014 TGTTTATGCTGGGATTTTAACAGAGAA 59.550 33.333 0.00 0.00 34.21 2.87
1996 2111 8.470002 GTTTATGCTGGGATTTTAACAGAGAAT 58.530 33.333 0.00 0.00 34.21 2.40
2003 2119 7.561251 TGGGATTTTAACAGAGAATATGTCGA 58.439 34.615 0.00 0.00 0.00 4.20
2025 2141 6.483307 TCGATCAATTTTGCAATCCCTAGTAG 59.517 38.462 0.00 0.00 0.00 2.57
2031 2147 8.739972 CAATTTTGCAATCCCTAGTAGTTAAGT 58.260 33.333 0.00 0.00 0.00 2.24
2034 2150 9.796180 TTTTGCAATCCCTAGTAGTTAAGTTTA 57.204 29.630 0.00 0.00 0.00 2.01
2063 2179 8.014070 TCAATTGATGCCATATGTTTCATTCT 57.986 30.769 3.38 0.00 0.00 2.40
2073 2189 8.352201 GCCATATGTTTCATTCTATTACTGCAA 58.648 33.333 1.24 0.00 0.00 4.08
2091 2207 2.223144 GCAACGCAGATGTGTTCACTAA 59.777 45.455 8.73 0.00 45.84 2.24
2109 2225 8.999431 GTTCACTAAATTTTCTGGTGTATGAGA 58.001 33.333 0.00 0.00 0.00 3.27
2125 2241 6.758886 GTGTATGAGATCTTCGTGATTTCCTT 59.241 38.462 0.00 2.04 35.97 3.36
2127 2243 5.667539 TGAGATCTTCGTGATTTCCTTCT 57.332 39.130 0.00 0.00 35.97 2.85
2133 2249 4.870426 TCTTCGTGATTTCCTTCTGTATGC 59.130 41.667 0.00 0.00 0.00 3.14
2155 2271 5.064452 TGCGATGTTTCAAAATTGTTGCTTT 59.936 32.000 0.00 0.00 0.00 3.51
2187 2303 5.234757 GCAATAGCTTGAGTCTCTGAATCAG 59.765 44.000 3.38 3.38 37.91 2.90
2312 2429 9.507280 CTATGTTCTTTAACTATTTGCATGGTG 57.493 33.333 0.00 0.00 36.51 4.17
2316 2433 9.685828 GTTCTTTAACTATTTGCATGGTGTTTA 57.314 29.630 0.00 0.00 32.54 2.01
2452 2646 6.690098 GTGTTTTGCTATATCAGTCAAGCATG 59.310 38.462 0.00 0.00 43.94 4.06
2654 2848 6.291377 ACTGTGTGAACTCAGACATGTATTT 58.709 36.000 16.99 0.00 46.80 1.40
2776 2970 8.724310 ACCTATGCTGATTAACTTAACCCTTAT 58.276 33.333 0.00 0.00 0.00 1.73
2865 3059 5.010314 TGAAGATGTTGCTGAAGAATTTGCT 59.990 36.000 0.00 0.00 0.00 3.91
2983 3177 7.178074 CCGATCCTTTTTATTAACAACTCGAC 58.822 38.462 0.00 0.00 0.00 4.20
2997 3191 3.305398 ACTCGACTGGTCATTCACTTC 57.695 47.619 1.63 0.00 0.00 3.01
3278 3473 1.937191 TAGTGATGTGCCTCCTGTGA 58.063 50.000 0.00 0.00 0.00 3.58
3295 3490 2.548057 TGTGAACATGAAGCGAAGGAAC 59.452 45.455 0.00 0.00 0.00 3.62
3520 3715 0.546122 ATGGCAAAGGCTACCATCGA 59.454 50.000 10.04 0.00 40.14 3.59
3675 3870 4.957954 TCCTCCTTATTCTAAGCCGTACAA 59.042 41.667 0.00 0.00 0.00 2.41
3679 3874 4.873827 CCTTATTCTAAGCCGTACAAAGCA 59.126 41.667 0.00 0.00 0.00 3.91
3831 4026 2.494059 TGTGAAGCCAAACTCTAGCAC 58.506 47.619 0.00 0.00 0.00 4.40
3869 4064 1.817357 TCCAACAGATCAAGCTGCTG 58.183 50.000 1.35 0.00 39.51 4.41
3870 4065 0.170561 CCAACAGATCAAGCTGCTGC 59.829 55.000 1.35 7.62 39.51 5.25
3888 4083 2.871022 CTGCTAATGGCTACAAGCTCAG 59.129 50.000 6.97 0.00 41.99 3.35
3899 4094 3.941657 AAGCTCAGCGGCTCGGAAC 62.942 63.158 0.00 0.00 42.24 3.62
4006 4204 3.102052 ACACACGGTTCTTTGTACGAT 57.898 42.857 0.00 0.00 0.00 3.73
4011 4209 2.298163 ACGGTTCTTTGTACGATGAGGT 59.702 45.455 0.00 0.00 0.00 3.85
4087 4285 1.453379 CAGCAGGAATGGCTCCCAG 60.453 63.158 0.00 0.00 46.81 4.45
4390 4588 0.741221 GACCCGATCAACCTGCTGAC 60.741 60.000 0.00 0.00 0.00 3.51
4405 4603 1.143305 CTGACGGCAACAACAGAGAG 58.857 55.000 0.00 0.00 40.36 3.20
4408 4606 1.071471 CGGCAACAACAGAGAGGGT 59.929 57.895 0.00 0.00 0.00 4.34
4432 4630 2.465813 CCCAGTCATCCAGAGAGAACT 58.534 52.381 0.00 0.00 0.00 3.01
4456 4654 3.510846 CTGCCTGCAGAATCTGGC 58.489 61.111 17.39 10.71 46.30 4.85
4549 4747 1.973281 CGTGCACCCAAAGATGCCT 60.973 57.895 12.15 0.00 41.33 4.75
4651 4849 2.049802 ACGCCGTGTGTTCTACCG 60.050 61.111 0.00 0.00 0.00 4.02
4683 4881 0.387239 CTCATGACGGCGATCGCATA 60.387 55.000 38.00 22.02 44.11 3.14
4684 4882 0.243636 TCATGACGGCGATCGCATAT 59.756 50.000 38.00 23.96 44.11 1.78
4685 4883 1.070821 CATGACGGCGATCGCATATT 58.929 50.000 38.00 20.39 44.11 1.28
4686 4884 1.059692 CATGACGGCGATCGCATATTC 59.940 52.381 38.00 26.52 44.11 1.75
4687 4885 1.001745 TGACGGCGATCGCATATTCG 61.002 55.000 38.00 31.69 44.11 3.34
4700 4898 3.724128 CGCATATTCGCATGAATCAGAGC 60.724 47.826 0.00 1.02 43.70 4.09
4716 4914 2.307934 GAGCATCTCCTGAGGTTGTC 57.692 55.000 0.00 0.00 0.00 3.18
4728 4926 0.674895 AGGTTGTCGCATGCTTCCTC 60.675 55.000 17.13 3.45 0.00 3.71
4735 4933 1.522580 GCATGCTTCCTCGGACCTC 60.523 63.158 11.37 0.00 0.00 3.85
4796 5000 1.143183 GCATTGCATTGCTCCCTGG 59.857 57.895 22.94 0.00 39.57 4.45
4800 5004 2.036256 GCATTGCTCCCTGGGTGT 59.964 61.111 13.56 0.00 0.00 4.16
4804 5008 1.212688 CATTGCTCCCTGGGTGTGATA 59.787 52.381 13.56 0.00 0.00 2.15
4825 5029 6.661377 TGATATCTAGGTAGAGAGCATTGGTC 59.339 42.308 7.79 7.79 35.34 4.02
4835 5039 2.237143 AGAGCATTGGTCGGAGAATTCA 59.763 45.455 8.44 0.00 39.69 2.57
4839 5043 3.191371 GCATTGGTCGGAGAATTCAAGTT 59.809 43.478 8.44 0.00 39.69 2.66
4840 5044 4.672801 GCATTGGTCGGAGAATTCAAGTTC 60.673 45.833 8.44 0.00 39.69 3.01
4883 5097 8.585881 ACCATACTATATACTCCATGTTGTGTC 58.414 37.037 0.00 0.00 0.00 3.67
4914 5128 2.227149 TGTTTGATGTGCTCATGTGCTC 59.773 45.455 19.60 16.39 34.06 4.26
4916 5130 2.188062 TGATGTGCTCATGTGCTCAA 57.812 45.000 23.38 9.58 39.39 3.02
4917 5131 2.718563 TGATGTGCTCATGTGCTCAAT 58.281 42.857 23.38 13.21 39.39 2.57
4948 5162 6.813649 GTGTATGTATAGATGCCGTTGATGAT 59.186 38.462 0.00 0.00 0.00 2.45
4950 5164 5.467035 TGTATAGATGCCGTTGATGATGA 57.533 39.130 0.00 0.00 0.00 2.92
4951 5165 5.473039 TGTATAGATGCCGTTGATGATGAG 58.527 41.667 0.00 0.00 0.00 2.90
4952 5166 2.251409 AGATGCCGTTGATGATGAGG 57.749 50.000 0.00 0.00 0.00 3.86
4954 5168 4.547859 GCCGTTGATGATGAGGCT 57.452 55.556 0.00 0.00 44.06 4.58
4955 5169 3.686622 GCCGTTGATGATGAGGCTA 57.313 52.632 0.00 0.00 44.06 3.93
4957 5171 3.319137 GCCGTTGATGATGAGGCTATA 57.681 47.619 0.00 0.00 44.06 1.31
4958 5172 2.996621 GCCGTTGATGATGAGGCTATAC 59.003 50.000 0.00 0.00 44.06 1.47
4959 5173 3.306364 GCCGTTGATGATGAGGCTATACT 60.306 47.826 0.00 0.00 44.06 2.12
4960 5174 4.240888 CCGTTGATGATGAGGCTATACTG 58.759 47.826 0.00 0.00 0.00 2.74
5073 5287 5.977635 TCTGACCCATGACAACATTACTAG 58.022 41.667 0.00 0.00 34.15 2.57
5097 5311 0.532862 CAGACTGGCCACGTTGAGTT 60.533 55.000 0.00 0.00 0.00 3.01
5130 5344 2.218603 GGTTGTTTCTCGCAGGAAAGA 58.781 47.619 1.96 0.00 36.12 2.52
5207 5422 0.831307 GACCGACTTCCTGGCCTAAT 59.169 55.000 3.32 0.00 0.00 1.73
5219 5434 7.234988 ACTTCCTGGCCTAATAATAATCTACGT 59.765 37.037 3.32 0.00 0.00 3.57
5234 5449 3.647026 CGTACGCACGTTCTCTCG 58.353 61.111 0.52 0.00 43.31 4.04
5280 5503 4.763793 TCAGTACCGAACTAAACTACTGCT 59.236 41.667 0.00 0.00 35.76 4.24
5282 5505 6.026513 CAGTACCGAACTAAACTACTGCTAC 58.973 44.000 0.00 0.00 35.76 3.58
5593 5819 1.286880 CCTGCGCAAACCCAAGAAG 59.713 57.895 13.05 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.090692 GCGGACTACATAAAAATTACTAAGTCA 57.909 33.333 0.00 0.00 34.03 3.41
2 3 9.090692 TGCGGACTACATAAAAATTACTAAGTC 57.909 33.333 0.00 0.00 0.00 3.01
3 4 9.095065 CTGCGGACTACATAAAAATTACTAAGT 57.905 33.333 0.00 0.00 0.00 2.24
4 5 9.095065 ACTGCGGACTACATAAAAATTACTAAG 57.905 33.333 0.00 0.00 0.00 2.18
5 6 8.875803 CACTGCGGACTACATAAAAATTACTAA 58.124 33.333 0.00 0.00 0.00 2.24
6 7 7.010738 GCACTGCGGACTACATAAAAATTACTA 59.989 37.037 0.00 0.00 0.00 1.82
7 8 6.183360 GCACTGCGGACTACATAAAAATTACT 60.183 38.462 0.00 0.00 0.00 2.24
8 9 5.963586 GCACTGCGGACTACATAAAAATTAC 59.036 40.000 0.00 0.00 0.00 1.89
9 10 6.114221 GCACTGCGGACTACATAAAAATTA 57.886 37.500 0.00 0.00 0.00 1.40
10 11 4.981794 GCACTGCGGACTACATAAAAATT 58.018 39.130 0.00 0.00 0.00 1.82
11 12 4.616181 GCACTGCGGACTACATAAAAAT 57.384 40.909 0.00 0.00 0.00 1.82
46 47 3.418068 GACTGACAGGCGCTGCAC 61.418 66.667 7.64 2.89 34.37 4.57
47 48 3.244281 ATGACTGACAGGCGCTGCA 62.244 57.895 7.64 5.71 34.37 4.41
48 49 2.435586 ATGACTGACAGGCGCTGC 60.436 61.111 7.64 0.00 34.37 5.25
49 50 2.747822 GCATGACTGACAGGCGCTG 61.748 63.158 7.64 6.86 45.84 5.18
50 51 2.435586 GCATGACTGACAGGCGCT 60.436 61.111 7.64 0.00 45.84 5.92
54 55 2.078849 TACAACGCATGACTGACAGG 57.921 50.000 7.51 0.00 0.00 4.00
55 56 4.424626 ACTATACAACGCATGACTGACAG 58.575 43.478 0.00 0.00 0.00 3.51
56 57 4.450082 ACTATACAACGCATGACTGACA 57.550 40.909 0.00 0.00 0.00 3.58
57 58 7.323895 CACTATACTATACAACGCATGACTGAC 59.676 40.741 0.00 0.00 0.00 3.51
58 59 7.012989 ACACTATACTATACAACGCATGACTGA 59.987 37.037 0.00 0.00 0.00 3.41
59 60 7.113544 CACACTATACTATACAACGCATGACTG 59.886 40.741 0.00 0.00 0.00 3.51
60 61 7.139392 CACACTATACTATACAACGCATGACT 58.861 38.462 0.00 0.00 0.00 3.41
61 62 6.362551 CCACACTATACTATACAACGCATGAC 59.637 42.308 0.00 0.00 0.00 3.06
62 63 6.443792 CCACACTATACTATACAACGCATGA 58.556 40.000 0.00 0.00 0.00 3.07
63 64 5.118664 GCCACACTATACTATACAACGCATG 59.881 44.000 0.00 0.00 0.00 4.06
64 65 5.227908 GCCACACTATACTATACAACGCAT 58.772 41.667 0.00 0.00 0.00 4.73
65 66 4.613944 GCCACACTATACTATACAACGCA 58.386 43.478 0.00 0.00 0.00 5.24
66 67 3.667261 CGCCACACTATACTATACAACGC 59.333 47.826 0.00 0.00 0.00 4.84
67 68 3.667261 GCGCCACACTATACTATACAACG 59.333 47.826 0.00 0.00 0.00 4.10
68 69 3.985925 GGCGCCACACTATACTATACAAC 59.014 47.826 24.80 0.00 0.00 3.32
69 70 3.893200 AGGCGCCACACTATACTATACAA 59.107 43.478 31.54 0.00 0.00 2.41
70 71 3.493334 AGGCGCCACACTATACTATACA 58.507 45.455 31.54 0.00 0.00 2.29
71 72 4.516365 AAGGCGCCACACTATACTATAC 57.484 45.455 31.54 0.00 0.00 1.47
72 73 4.342951 ACAAAGGCGCCACACTATACTATA 59.657 41.667 31.54 0.00 0.00 1.31
73 74 3.134081 ACAAAGGCGCCACACTATACTAT 59.866 43.478 31.54 0.00 0.00 2.12
74 75 2.498481 ACAAAGGCGCCACACTATACTA 59.502 45.455 31.54 0.00 0.00 1.82
75 76 1.278127 ACAAAGGCGCCACACTATACT 59.722 47.619 31.54 0.00 0.00 2.12
76 77 1.396996 CACAAAGGCGCCACACTATAC 59.603 52.381 31.54 0.00 0.00 1.47
77 78 1.002659 ACACAAAGGCGCCACACTATA 59.997 47.619 31.54 0.00 0.00 1.31
78 79 0.250727 ACACAAAGGCGCCACACTAT 60.251 50.000 31.54 2.66 0.00 2.12
79 80 0.882927 GACACAAAGGCGCCACACTA 60.883 55.000 31.54 0.00 0.00 2.74
80 81 2.124320 ACACAAAGGCGCCACACT 60.124 55.556 31.54 4.11 0.00 3.55
81 82 2.331451 GACACAAAGGCGCCACAC 59.669 61.111 31.54 8.57 0.00 3.82
82 83 3.276091 CGACACAAAGGCGCCACA 61.276 61.111 31.54 0.00 45.03 4.17
89 90 3.283684 TTGCGCCCGACACAAAGG 61.284 61.111 4.18 0.00 0.00 3.11
90 91 2.051345 GTTGCGCCCGACACAAAG 60.051 61.111 4.18 0.00 0.00 2.77
91 92 2.515057 AGTTGCGCCCGACACAAA 60.515 55.556 4.18 0.00 0.00 2.83
92 93 2.970324 GAGTTGCGCCCGACACAA 60.970 61.111 4.18 0.00 0.00 3.33
93 94 3.741830 TTGAGTTGCGCCCGACACA 62.742 57.895 4.18 3.19 0.00 3.72
94 95 2.054140 TTTTGAGTTGCGCCCGACAC 62.054 55.000 4.18 0.24 0.00 3.67
95 96 1.377366 TTTTTGAGTTGCGCCCGACA 61.377 50.000 4.18 0.00 0.00 4.35
96 97 0.660300 CTTTTTGAGTTGCGCCCGAC 60.660 55.000 4.18 0.47 0.00 4.79
97 98 1.652012 CTTTTTGAGTTGCGCCCGA 59.348 52.632 4.18 0.00 0.00 5.14
98 99 1.371635 CCTTTTTGAGTTGCGCCCG 60.372 57.895 4.18 0.00 0.00 6.13
99 100 0.318699 GACCTTTTTGAGTTGCGCCC 60.319 55.000 4.18 0.00 0.00 6.13
100 101 0.383949 TGACCTTTTTGAGTTGCGCC 59.616 50.000 4.18 0.00 0.00 6.53
101 102 1.758783 CTGACCTTTTTGAGTTGCGC 58.241 50.000 0.00 0.00 0.00 6.09
102 103 1.334869 AGCTGACCTTTTTGAGTTGCG 59.665 47.619 0.00 0.00 0.00 4.85
103 104 2.358898 TCAGCTGACCTTTTTGAGTTGC 59.641 45.455 13.74 0.00 0.00 4.17
104 105 3.629398 ACTCAGCTGACCTTTTTGAGTTG 59.371 43.478 13.74 0.37 44.30 3.16
105 106 3.629398 CACTCAGCTGACCTTTTTGAGTT 59.371 43.478 13.74 0.00 44.30 3.01
106 107 3.118261 TCACTCAGCTGACCTTTTTGAGT 60.118 43.478 13.74 2.70 46.77 3.41
107 108 3.470709 TCACTCAGCTGACCTTTTTGAG 58.529 45.455 13.74 1.98 40.73 3.02
108 109 3.558931 TCACTCAGCTGACCTTTTTGA 57.441 42.857 13.74 5.87 0.00 2.69
109 110 4.843220 ATTCACTCAGCTGACCTTTTTG 57.157 40.909 13.74 3.60 0.00 2.44
110 111 5.859205 AAATTCACTCAGCTGACCTTTTT 57.141 34.783 13.74 6.69 0.00 1.94
111 112 5.859205 AAAATTCACTCAGCTGACCTTTT 57.141 34.783 13.74 10.88 0.00 2.27
112 113 5.859205 AAAAATTCACTCAGCTGACCTTT 57.141 34.783 13.74 5.47 0.00 3.11
134 135 9.844790 CATATCACAAAATGAACTGCTCTTAAA 57.155 29.630 0.00 0.00 41.93 1.52
135 136 8.461222 CCATATCACAAAATGAACTGCTCTTAA 58.539 33.333 0.00 0.00 41.93 1.85
136 137 7.611467 ACCATATCACAAAATGAACTGCTCTTA 59.389 33.333 0.00 0.00 41.93 2.10
137 138 6.435277 ACCATATCACAAAATGAACTGCTCTT 59.565 34.615 0.00 0.00 41.93 2.85
138 139 5.948162 ACCATATCACAAAATGAACTGCTCT 59.052 36.000 0.00 0.00 41.93 4.09
139 140 6.199937 ACCATATCACAAAATGAACTGCTC 57.800 37.500 0.00 0.00 41.93 4.26
140 141 6.594788 AACCATATCACAAAATGAACTGCT 57.405 33.333 0.00 0.00 41.93 4.24
141 142 7.656707 AAAACCATATCACAAAATGAACTGC 57.343 32.000 0.00 0.00 41.93 4.40
149 150 9.747898 ACCTGTAGATAAAACCATATCACAAAA 57.252 29.630 0.00 0.00 35.22 2.44
150 151 9.747898 AACCTGTAGATAAAACCATATCACAAA 57.252 29.630 0.00 0.00 35.22 2.83
167 168 9.255304 GCAAATTTGACAATTTTAACCTGTAGA 57.745 29.630 22.31 0.00 40.09 2.59
168 169 8.495148 GGCAAATTTGACAATTTTAACCTGTAG 58.505 33.333 22.31 0.00 40.09 2.74
169 170 7.442666 GGGCAAATTTGACAATTTTAACCTGTA 59.557 33.333 25.05 0.00 40.09 2.74
170 171 6.262049 GGGCAAATTTGACAATTTTAACCTGT 59.738 34.615 25.05 0.00 40.09 4.00
171 172 6.565623 CGGGCAAATTTGACAATTTTAACCTG 60.566 38.462 25.05 11.51 40.09 4.00
172 173 5.468409 CGGGCAAATTTGACAATTTTAACCT 59.532 36.000 25.05 0.00 40.09 3.50
173 174 5.237561 ACGGGCAAATTTGACAATTTTAACC 59.762 36.000 25.05 10.39 40.09 2.85
174 175 6.018669 TGACGGGCAAATTTGACAATTTTAAC 60.019 34.615 25.05 4.60 40.09 2.01
175 176 6.018669 GTGACGGGCAAATTTGACAATTTTAA 60.019 34.615 25.05 1.50 40.09 1.52
176 177 5.463724 GTGACGGGCAAATTTGACAATTTTA 59.536 36.000 25.05 3.85 40.09 1.52
177 178 4.272261 GTGACGGGCAAATTTGACAATTTT 59.728 37.500 25.05 4.22 40.09 1.82
178 179 3.807071 GTGACGGGCAAATTTGACAATTT 59.193 39.130 25.05 6.02 42.37 1.82
179 180 3.181471 TGTGACGGGCAAATTTGACAATT 60.181 39.130 25.05 8.58 38.18 2.32
180 181 2.363680 TGTGACGGGCAAATTTGACAAT 59.636 40.909 25.05 12.43 38.18 2.71
181 182 1.751351 TGTGACGGGCAAATTTGACAA 59.249 42.857 25.05 5.19 38.18 3.18
182 183 1.066303 GTGTGACGGGCAAATTTGACA 59.934 47.619 25.05 14.07 38.18 3.58
183 184 1.601914 GGTGTGACGGGCAAATTTGAC 60.602 52.381 22.31 19.34 34.70 3.18
184 185 0.671251 GGTGTGACGGGCAAATTTGA 59.329 50.000 22.31 0.00 0.00 2.69
185 186 0.319469 GGGTGTGACGGGCAAATTTG 60.319 55.000 14.03 14.03 0.00 2.32
186 187 1.801309 CGGGTGTGACGGGCAAATTT 61.801 55.000 0.00 0.00 0.00 1.82
187 188 2.265182 CGGGTGTGACGGGCAAATT 61.265 57.895 0.00 0.00 0.00 1.82
188 189 2.671619 CGGGTGTGACGGGCAAAT 60.672 61.111 0.00 0.00 0.00 2.32
194 195 4.308458 TTCAGGCGGGTGTGACGG 62.308 66.667 0.00 0.00 0.00 4.79
195 196 2.738521 CTTCAGGCGGGTGTGACG 60.739 66.667 0.00 0.00 0.00 4.35
196 197 1.227853 AACTTCAGGCGGGTGTGAC 60.228 57.895 0.00 0.00 0.00 3.67
197 198 1.227823 CAACTTCAGGCGGGTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
198 199 0.817634 TTCAACTTCAGGCGGGTGTG 60.818 55.000 0.00 0.00 0.00 3.82
199 200 0.106918 TTTCAACTTCAGGCGGGTGT 60.107 50.000 0.00 0.00 0.00 4.16
200 201 1.068333 CATTTCAACTTCAGGCGGGTG 60.068 52.381 0.00 0.00 0.00 4.61
201 202 1.247567 CATTTCAACTTCAGGCGGGT 58.752 50.000 0.00 0.00 0.00 5.28
202 203 0.527565 CCATTTCAACTTCAGGCGGG 59.472 55.000 0.00 0.00 0.00 6.13
203 204 1.068333 CACCATTTCAACTTCAGGCGG 60.068 52.381 0.00 0.00 0.00 6.13
204 205 1.068333 CCACCATTTCAACTTCAGGCG 60.068 52.381 0.00 0.00 0.00 5.52
205 206 1.273327 CCCACCATTTCAACTTCAGGC 59.727 52.381 0.00 0.00 0.00 4.85
206 207 2.821969 CTCCCACCATTTCAACTTCAGG 59.178 50.000 0.00 0.00 0.00 3.86
207 208 2.229784 GCTCCCACCATTTCAACTTCAG 59.770 50.000 0.00 0.00 0.00 3.02
208 209 2.238521 GCTCCCACCATTTCAACTTCA 58.761 47.619 0.00 0.00 0.00 3.02
209 210 1.546029 GGCTCCCACCATTTCAACTTC 59.454 52.381 0.00 0.00 0.00 3.01
210 211 1.632589 GGCTCCCACCATTTCAACTT 58.367 50.000 0.00 0.00 0.00 2.66
211 212 0.251787 GGGCTCCCACCATTTCAACT 60.252 55.000 0.00 0.00 35.81 3.16
212 213 0.541764 TGGGCTCCCACCATTTCAAC 60.542 55.000 2.93 0.00 41.89 3.18
213 214 1.857049 TGGGCTCCCACCATTTCAA 59.143 52.632 2.93 0.00 41.89 2.69
214 215 3.599602 TGGGCTCCCACCATTTCA 58.400 55.556 2.93 0.00 41.89 2.69
223 224 2.196776 CCATGTGGATGGGCTCCC 59.803 66.667 0.00 0.00 45.11 4.30
231 232 0.748005 GGCGCAGTTACCATGTGGAT 60.748 55.000 10.83 0.00 38.94 3.41
248 249 4.021544 TCCAGTTAATTGTCCATTTGTGGC 60.022 41.667 0.00 0.00 0.00 5.01
263 264 2.779755 ATGCACATCCGTCCAGTTAA 57.220 45.000 0.00 0.00 0.00 2.01
324 325 3.562973 CAGCAGCTTAGAGAGAGAGAGAG 59.437 52.174 0.00 0.00 0.00 3.20
325 326 3.054434 ACAGCAGCTTAGAGAGAGAGAGA 60.054 47.826 0.00 0.00 0.00 3.10
326 327 3.282021 ACAGCAGCTTAGAGAGAGAGAG 58.718 50.000 0.00 0.00 0.00 3.20
327 328 3.364460 ACAGCAGCTTAGAGAGAGAGA 57.636 47.619 0.00 0.00 0.00 3.10
328 329 3.696051 AGAACAGCAGCTTAGAGAGAGAG 59.304 47.826 0.00 0.00 0.00 3.20
329 330 3.696045 AGAACAGCAGCTTAGAGAGAGA 58.304 45.455 0.00 0.00 0.00 3.10
330 331 4.158394 AGAAGAACAGCAGCTTAGAGAGAG 59.842 45.833 0.00 0.00 0.00 3.20
331 332 4.085733 AGAAGAACAGCAGCTTAGAGAGA 58.914 43.478 0.00 0.00 0.00 3.10
334 335 3.520569 GGAGAAGAACAGCAGCTTAGAG 58.479 50.000 0.00 0.00 0.00 2.43
336 337 2.626840 GGGAGAAGAACAGCAGCTTAG 58.373 52.381 0.00 0.00 0.00 2.18
337 338 1.279271 GGGGAGAAGAACAGCAGCTTA 59.721 52.381 0.00 0.00 0.00 3.09
338 339 0.037447 GGGGAGAAGAACAGCAGCTT 59.963 55.000 0.00 0.00 0.00 3.74
339 340 1.682257 GGGGAGAAGAACAGCAGCT 59.318 57.895 0.00 0.00 0.00 4.24
340 341 4.310288 GGGGAGAAGAACAGCAGC 57.690 61.111 0.00 0.00 0.00 5.25
679 681 2.025969 CGTCCTGCTGTGCACAGAG 61.026 63.158 43.32 33.56 46.59 3.35
680 682 2.026945 TTCGTCCTGCTGTGCACAGA 62.027 55.000 43.32 28.20 46.59 3.41
684 686 2.666190 GCTTCGTCCTGCTGTGCA 60.666 61.111 0.00 0.00 36.92 4.57
687 695 0.601311 GACTTGCTTCGTCCTGCTGT 60.601 55.000 0.00 0.00 0.00 4.40
690 698 0.793250 GAAGACTTGCTTCGTCCTGC 59.207 55.000 0.00 0.00 43.22 4.85
827 835 0.179108 GAAATCGGGAGGACGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
828 836 0.613853 AGAAATCGGGAGGACGGACA 60.614 55.000 0.00 0.00 0.00 4.02
829 837 0.102663 GAGAAATCGGGAGGACGGAC 59.897 60.000 0.00 0.00 0.00 4.79
830 838 1.041447 GGAGAAATCGGGAGGACGGA 61.041 60.000 0.00 0.00 0.00 4.69
870 878 0.035056 AATGGTGGCGAGAAAGGGAG 60.035 55.000 0.00 0.00 0.00 4.30
872 880 1.315257 CCAATGGTGGCGAGAAAGGG 61.315 60.000 0.00 0.00 38.35 3.95
916 943 4.680237 CGCTTCGAGTGGTGGGCA 62.680 66.667 0.00 0.00 0.00 5.36
1046 1106 2.122189 GAGGGAGGGATCCAGGGG 60.122 72.222 15.23 0.00 0.00 4.79
1095 1155 0.468226 TCTCACGGACCAGCAAAAGT 59.532 50.000 0.00 0.00 0.00 2.66
1098 1158 1.301716 GCTCTCACGGACCAGCAAA 60.302 57.895 0.00 0.00 0.00 3.68
1161 1221 2.030946 GTCATCGCCGAAAATCCTCAAG 59.969 50.000 0.00 0.00 0.00 3.02
1173 1233 1.059369 CGAGCAAAAGTCATCGCCG 59.941 57.895 0.00 0.00 0.00 6.46
1261 1324 3.570926 GGAAACTGAAAAATCCGGACC 57.429 47.619 6.12 0.00 0.00 4.46
1356 1425 1.472662 ATCGGGCCTGGTAATCTCCG 61.473 60.000 12.87 0.00 38.92 4.63
1386 1458 0.250038 ACATGTGAGCAACAGCGACT 60.250 50.000 0.00 0.00 43.64 4.18
1400 1472 1.603802 CAAAGCTGGACGAACACATGT 59.396 47.619 0.00 0.00 0.00 3.21
1461 1534 2.452295 TCAGAGAGCAAGCAACAGAG 57.548 50.000 0.00 0.00 0.00 3.35
1463 1536 1.738350 CCATCAGAGAGCAAGCAACAG 59.262 52.381 0.00 0.00 0.00 3.16
1473 1546 1.072015 GATTCCCAGGCCATCAGAGAG 59.928 57.143 5.01 0.00 0.00 3.20
1476 1549 0.841961 CAGATTCCCAGGCCATCAGA 59.158 55.000 5.01 0.00 0.00 3.27
1477 1550 0.822532 GCAGATTCCCAGGCCATCAG 60.823 60.000 5.01 0.00 0.00 2.90
1478 1551 1.228228 GCAGATTCCCAGGCCATCA 59.772 57.895 5.01 0.00 0.00 3.07
1479 1552 1.530183 GGCAGATTCCCAGGCCATC 60.530 63.158 5.01 0.00 45.70 3.51
1482 1555 1.075748 AATGGCAGATTCCCAGGCC 60.076 57.895 0.00 0.00 46.58 5.19
1483 1556 1.450531 CGAATGGCAGATTCCCAGGC 61.451 60.000 0.00 0.00 35.48 4.85
1484 1557 0.107017 ACGAATGGCAGATTCCCAGG 60.107 55.000 0.00 0.00 35.48 4.45
1488 1561 1.936547 GAGTCACGAATGGCAGATTCC 59.063 52.381 0.00 0.00 30.46 3.01
1489 1562 1.590238 CGAGTCACGAATGGCAGATTC 59.410 52.381 0.00 0.00 45.77 2.52
1490 1563 1.645034 CGAGTCACGAATGGCAGATT 58.355 50.000 0.00 0.00 45.77 2.40
1491 1564 3.352447 CGAGTCACGAATGGCAGAT 57.648 52.632 0.00 0.00 45.77 2.90
1492 1565 4.889427 CGAGTCACGAATGGCAGA 57.111 55.556 0.00 0.00 45.77 4.26
1501 1574 2.293677 TCCATCCAAATCGAGTCACG 57.706 50.000 0.00 0.00 44.09 4.35
1502 1575 2.797156 CGATCCATCCAAATCGAGTCAC 59.203 50.000 0.00 0.00 45.83 3.67
1503 1576 2.803133 GCGATCCATCCAAATCGAGTCA 60.803 50.000 8.77 0.00 45.83 3.41
1504 1577 1.795286 GCGATCCATCCAAATCGAGTC 59.205 52.381 8.77 0.00 45.83 3.36
1505 1578 1.138859 TGCGATCCATCCAAATCGAGT 59.861 47.619 8.77 0.00 45.83 4.18
1516 1589 4.924305 AGCAATAACAAATGCGATCCAT 57.076 36.364 0.00 0.00 46.98 3.41
1529 1602 7.596248 TCAGATCAAGAAAAAGCAAGCAATAAC 59.404 33.333 0.00 0.00 0.00 1.89
1530 1603 7.660112 TCAGATCAAGAAAAAGCAAGCAATAA 58.340 30.769 0.00 0.00 0.00 1.40
1532 1605 6.092955 TCAGATCAAGAAAAAGCAAGCAAT 57.907 33.333 0.00 0.00 0.00 3.56
1533 1606 5.518848 TCAGATCAAGAAAAAGCAAGCAA 57.481 34.783 0.00 0.00 0.00 3.91
1534 1607 5.717078 ATCAGATCAAGAAAAAGCAAGCA 57.283 34.783 0.00 0.00 0.00 3.91
1536 1609 6.089551 CAGCAATCAGATCAAGAAAAAGCAAG 59.910 38.462 0.00 0.00 0.00 4.01
1537 1610 5.924254 CAGCAATCAGATCAAGAAAAAGCAA 59.076 36.000 0.00 0.00 0.00 3.91
1540 1613 6.263516 TCCAGCAATCAGATCAAGAAAAAG 57.736 37.500 0.00 0.00 0.00 2.27
1596 1677 0.970427 GGGTCCGGGTGCATTTGATT 60.970 55.000 0.00 0.00 0.00 2.57
1638 1719 0.178953 ACTTCACCATGGCCTGCTTT 60.179 50.000 13.04 0.00 0.00 3.51
1689 1770 1.599419 GCGTGCGATTCAAGGTTGTTT 60.599 47.619 0.00 0.00 0.00 2.83
1692 1773 1.154225 GGCGTGCGATTCAAGGTTG 60.154 57.895 0.00 0.00 0.00 3.77
1725 1806 0.106708 GGTGAGTTGAGTGTGCAGGA 59.893 55.000 0.00 0.00 0.00 3.86
1760 1841 8.548721 GTGTACACTGCTGGTAATAATCATTAC 58.451 37.037 18.92 0.00 43.92 1.89
1815 1896 9.599866 AAGGAGGAAACATTTACAAAAGAAAAG 57.400 29.630 0.00 0.00 0.00 2.27
1841 1956 2.423803 CCTTCCATCTGCATTCCATCCA 60.424 50.000 0.00 0.00 0.00 3.41
1887 2002 3.573598 CTCGATCATGTCATAGCAGGAC 58.426 50.000 0.00 0.00 31.81 3.85
1917 2032 2.695666 GAGCTGCTTCCCTATGTAGTCA 59.304 50.000 2.53 0.00 0.00 3.41
1987 2102 7.912250 GCAAAATTGATCGACATATTCTCTGTT 59.088 33.333 0.00 0.00 0.00 3.16
1989 2104 7.412063 TGCAAAATTGATCGACATATTCTCTG 58.588 34.615 0.00 0.00 0.00 3.35
1990 2105 7.558161 TGCAAAATTGATCGACATATTCTCT 57.442 32.000 0.00 0.00 0.00 3.10
1991 2106 8.792831 ATTGCAAAATTGATCGACATATTCTC 57.207 30.769 1.71 0.00 0.00 2.87
1994 2109 6.925165 GGGATTGCAAAATTGATCGACATATT 59.075 34.615 1.71 0.00 0.00 1.28
1995 2110 6.266103 AGGGATTGCAAAATTGATCGACATAT 59.734 34.615 1.71 0.00 0.00 1.78
1996 2111 5.593909 AGGGATTGCAAAATTGATCGACATA 59.406 36.000 1.71 0.00 0.00 2.29
2003 2119 7.961326 AACTACTAGGGATTGCAAAATTGAT 57.039 32.000 1.71 0.00 0.00 2.57
2009 2125 9.444600 CTAAACTTAACTACTAGGGATTGCAAA 57.555 33.333 1.71 0.00 0.00 3.68
2025 2141 7.771183 TGGCATCAATTGATCCTAAACTTAAC 58.229 34.615 24.80 4.75 31.21 2.01
2031 2147 8.481492 AACATATGGCATCAATTGATCCTAAA 57.519 30.769 24.80 16.13 31.21 1.85
2034 2150 6.551975 TGAAACATATGGCATCAATTGATCCT 59.448 34.615 24.80 17.35 31.21 3.24
2073 2189 5.689383 AAATTTAGTGAACACATCTGCGT 57.311 34.783 7.68 0.00 0.00 5.24
2085 2201 9.383519 GATCTCATACACCAGAAAATTTAGTGA 57.616 33.333 14.07 3.20 32.76 3.41
2091 2207 7.065085 CACGAAGATCTCATACACCAGAAAATT 59.935 37.037 0.00 0.00 0.00 1.82
2109 2225 5.525378 GCATACAGAAGGAAATCACGAAGAT 59.475 40.000 0.00 0.00 39.09 2.40
2114 2230 3.186909 TCGCATACAGAAGGAAATCACG 58.813 45.455 0.00 0.00 0.00 4.35
2125 2241 6.676950 ACAATTTTGAAACATCGCATACAGA 58.323 32.000 0.00 0.00 0.00 3.41
2127 2243 6.346439 GCAACAATTTTGAAACATCGCATACA 60.346 34.615 0.00 0.00 0.00 2.29
2133 2249 6.476896 ACAAAGCAACAATTTTGAAACATCG 58.523 32.000 4.18 0.00 37.63 3.84
2175 2291 6.974932 TTATGCAGAAACTGATTCAGAGAC 57.025 37.500 20.33 9.89 40.72 3.36
2205 2321 6.985653 TTTTCAATCAAAACTGGGGTATGA 57.014 33.333 0.00 0.00 0.00 2.15
2295 2412 9.469807 CTTTGTAAACACCATGCAAATAGTTAA 57.530 29.630 0.00 0.00 33.06 2.01
2316 2433 8.624776 CAGTTTCAAGATCCTCTAAAACTTTGT 58.375 33.333 11.75 0.00 35.41 2.83
2335 2452 8.559536 GCTACTATATGCTTATTTGCAGTTTCA 58.440 33.333 0.00 0.00 46.71 2.69
2357 2474 5.979517 ACTGAACAATTCTGCAAAAAGCTAC 59.020 36.000 0.00 0.00 45.94 3.58
2654 2848 4.044308 TGGAAGCCCCATATTTCTCTGTA 58.956 43.478 0.00 0.00 40.82 2.74
2776 2970 2.682856 GCTTCTGAACAAACTGTCCACA 59.317 45.455 0.00 0.00 0.00 4.17
2865 3059 8.047911 TCAAATGTCTTGGTATTAAACGGGATA 58.952 33.333 0.00 0.00 0.00 2.59
2960 3154 8.175716 CCAGTCGAGTTGTTAATAAAAAGGATC 58.824 37.037 0.00 0.00 0.00 3.36
2983 3177 6.814506 AAAAGATCAGAAGTGAATGACCAG 57.185 37.500 0.00 0.00 35.88 4.00
3278 3473 1.156736 CCGTTCCTTCGCTTCATGTT 58.843 50.000 0.00 0.00 0.00 2.71
3295 3490 2.472695 TGACCTCCTTTTGATGACCG 57.527 50.000 0.00 0.00 0.00 4.79
3520 3715 2.283388 CCAGCAGCCATGTGGGTT 60.283 61.111 0.04 0.00 44.81 4.11
3658 3853 5.163933 CGTTGCTTTGTACGGCTTAGAATAA 60.164 40.000 6.79 0.00 34.30 1.40
3675 3870 0.315568 AGACTTCTCGCTCGTTGCTT 59.684 50.000 2.29 0.00 40.11 3.91
3679 3874 0.387878 CAGCAGACTTCTCGCTCGTT 60.388 55.000 0.00 0.00 32.48 3.85
3831 4026 2.597117 ATTTTCATGCGCGGGCTTCG 62.597 55.000 25.62 13.32 40.82 3.79
3869 4064 1.601430 GCTGAGCTTGTAGCCATTAGC 59.399 52.381 0.00 0.00 43.77 3.09
3870 4065 1.863454 CGCTGAGCTTGTAGCCATTAG 59.137 52.381 1.78 0.00 43.77 1.73
3871 4066 1.473257 CCGCTGAGCTTGTAGCCATTA 60.473 52.381 1.78 0.00 43.77 1.90
3877 4072 1.875813 CGAGCCGCTGAGCTTGTAG 60.876 63.158 1.78 0.00 45.15 2.74
3961 4159 3.004839 GTGGCCTTGAACTTTTCCTTCTC 59.995 47.826 3.32 0.00 0.00 2.87
4006 4204 4.081406 CCTTTTCATCATTGGTCACCTCA 58.919 43.478 0.00 0.00 0.00 3.86
4011 4209 4.468713 TGTCACCTTTTCATCATTGGTCA 58.531 39.130 0.00 0.00 0.00 4.02
4087 4285 2.537792 TTCGTCGCTCATGGTCGTCC 62.538 60.000 0.00 0.00 0.00 4.79
4246 4444 3.068691 TCGTGCCCTCCTCCTTCG 61.069 66.667 0.00 0.00 0.00 3.79
4373 4571 1.811266 CGTCAGCAGGTTGATCGGG 60.811 63.158 0.00 0.00 0.00 5.14
4375 4573 2.456119 GCCGTCAGCAGGTTGATCG 61.456 63.158 0.00 0.00 42.97 3.69
4390 4588 1.071471 ACCCTCTCTGTTGTTGCCG 59.929 57.895 0.00 0.00 0.00 5.69
4408 4606 3.002583 TCTGGATGACTGGGCGCA 61.003 61.111 10.83 2.47 0.00 6.09
4445 4643 2.203126 CGGGGAGCCAGATTCTGC 60.203 66.667 8.23 4.31 0.00 4.26
4540 4738 2.972625 TCGTCGAAATCAGGCATCTTT 58.027 42.857 0.00 0.00 0.00 2.52
4549 4747 1.194547 GCAGCAAGTTCGTCGAAATCA 59.805 47.619 9.70 0.00 0.00 2.57
4651 4849 1.092348 TCATGAGATGCTGTTGCTGC 58.908 50.000 0.00 0.00 40.48 5.25
4683 4881 3.741249 AGATGCTCTGATTCATGCGAAT 58.259 40.909 0.00 0.00 44.75 3.34
4684 4882 3.129109 GAGATGCTCTGATTCATGCGAA 58.871 45.455 0.00 0.00 35.05 4.70
4685 4883 2.547430 GGAGATGCTCTGATTCATGCGA 60.547 50.000 0.00 0.00 0.00 5.10
4686 4884 1.799403 GGAGATGCTCTGATTCATGCG 59.201 52.381 0.00 0.00 0.00 4.73
4687 4885 2.809119 CAGGAGATGCTCTGATTCATGC 59.191 50.000 5.24 5.24 0.00 4.06
4688 4886 4.311606 CTCAGGAGATGCTCTGATTCATG 58.688 47.826 0.00 0.00 0.00 3.07
4689 4887 3.325425 CCTCAGGAGATGCTCTGATTCAT 59.675 47.826 0.00 0.00 0.00 2.57
4690 4888 2.699321 CCTCAGGAGATGCTCTGATTCA 59.301 50.000 0.00 0.00 0.00 2.57
4700 4898 0.247460 TGCGACAACCTCAGGAGATG 59.753 55.000 0.00 0.00 0.00 2.90
4713 4911 2.125552 CCGAGGAAGCATGCGACA 60.126 61.111 13.01 0.00 0.00 4.35
4716 4914 2.892425 GGTCCGAGGAAGCATGCG 60.892 66.667 13.01 0.00 0.00 4.73
4728 4926 4.760047 CAAGGCCACCGAGGTCCG 62.760 72.222 5.01 0.00 45.84 4.79
4735 4933 1.247567 AGATTGAAACAAGGCCACCG 58.752 50.000 5.01 0.00 0.00 4.94
4796 5000 5.317808 TGCTCTCTACCTAGATATCACACC 58.682 45.833 5.32 0.00 0.00 4.16
4800 5004 6.556639 ACCAATGCTCTCTACCTAGATATCA 58.443 40.000 5.32 0.00 0.00 2.15
4804 5008 3.823873 CGACCAATGCTCTCTACCTAGAT 59.176 47.826 0.00 0.00 0.00 1.98
4825 5029 3.747099 ATTGCGAACTTGAATTCTCCG 57.253 42.857 7.05 4.43 0.00 4.63
4835 5039 6.601613 TGGTATTCCTATCAAATTGCGAACTT 59.398 34.615 0.00 0.00 34.23 2.66
4839 5043 7.450074 AGTATGGTATTCCTATCAAATTGCGA 58.550 34.615 0.00 0.00 34.23 5.10
4840 5044 7.672983 AGTATGGTATTCCTATCAAATTGCG 57.327 36.000 0.00 0.00 34.23 4.85
4871 5085 1.599518 GCACCCGACACAACATGGA 60.600 57.895 0.00 0.00 0.00 3.41
4872 5086 2.953821 GCACCCGACACAACATGG 59.046 61.111 0.00 0.00 0.00 3.66
4873 5087 2.555782 CGCACCCGACACAACATG 59.444 61.111 0.00 0.00 36.29 3.21
4874 5088 2.668212 CCGCACCCGACACAACAT 60.668 61.111 0.00 0.00 36.29 2.71
4875 5089 3.683966 AACCGCACCCGACACAACA 62.684 57.895 0.00 0.00 36.29 3.33
4876 5090 2.898343 AACCGCACCCGACACAAC 60.898 61.111 0.00 0.00 36.29 3.32
4877 5091 2.897846 CAACCGCACCCGACACAA 60.898 61.111 0.00 0.00 36.29 3.33
4878 5092 3.683966 AACAACCGCACCCGACACA 62.684 57.895 0.00 0.00 36.29 3.72
4879 5093 2.474612 AAACAACCGCACCCGACAC 61.475 57.895 0.00 0.00 36.29 3.67
4883 5097 1.081509 CATCAAACAACCGCACCCG 60.082 57.895 0.00 0.00 0.00 5.28
4914 5128 7.359514 CGGCATCTATACATACACTGACAATTG 60.360 40.741 3.24 3.24 0.00 2.32
4916 5130 6.159293 CGGCATCTATACATACACTGACAAT 58.841 40.000 0.00 0.00 0.00 2.71
4917 5131 5.068591 ACGGCATCTATACATACACTGACAA 59.931 40.000 0.00 0.00 0.00 3.18
4948 5162 6.737720 AATCATCACTTCAGTATAGCCTCA 57.262 37.500 0.00 0.00 0.00 3.86
4950 5164 7.372260 AGAAATCATCACTTCAGTATAGCCT 57.628 36.000 0.00 0.00 0.00 4.58
4951 5165 7.712639 TGAAGAAATCATCACTTCAGTATAGCC 59.287 37.037 0.00 0.00 42.91 3.93
4952 5166 8.654230 TGAAGAAATCATCACTTCAGTATAGC 57.346 34.615 0.00 0.00 42.91 2.97
5073 5287 0.317479 AACGTGGCCAGTCTGACTAC 59.683 55.000 5.11 5.76 0.00 2.73
5186 5401 4.452733 GGCCAGGAAGTCGGTCGG 62.453 72.222 0.00 0.00 0.00 4.79
5187 5402 1.601419 TTAGGCCAGGAAGTCGGTCG 61.601 60.000 5.01 0.00 29.98 4.79
5188 5403 0.831307 ATTAGGCCAGGAAGTCGGTC 59.169 55.000 5.01 0.00 0.00 4.79
5189 5404 2.170012 TATTAGGCCAGGAAGTCGGT 57.830 50.000 5.01 0.00 0.00 4.69
5190 5405 3.771577 ATTATTAGGCCAGGAAGTCGG 57.228 47.619 5.01 0.00 0.00 4.79
5191 5406 6.702329 AGATTATTATTAGGCCAGGAAGTCG 58.298 40.000 5.01 0.00 0.00 4.18
5219 5434 0.720027 CTCTCGAGAGAACGTGCGTA 59.280 55.000 34.30 0.00 44.74 4.42
5233 5448 3.868077 CCAGCTAATTTGAAGGTCTCTCG 59.132 47.826 0.00 0.00 0.00 4.04
5234 5449 4.195416 CCCAGCTAATTTGAAGGTCTCTC 58.805 47.826 0.00 0.00 0.00 3.20
5240 5455 3.690460 ACTGACCCAGCTAATTTGAAGG 58.310 45.455 0.00 0.00 34.37 3.46
5280 5503 4.405680 CCGGCATCAGATTCCTATATGGTA 59.594 45.833 0.00 0.00 37.07 3.25
5282 5505 3.801698 CCGGCATCAGATTCCTATATGG 58.198 50.000 0.00 0.00 37.10 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.