Multiple sequence alignment - TraesCS6D01G122300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G122300 chr6D 100.000 7400 0 0 1 7400 86728109 86735508 0.000000e+00 13666.0
1 TraesCS6D01G122300 chr6D 91.859 1167 66 15 4595 5751 86641296 86640149 0.000000e+00 1602.0
2 TraesCS6D01G122300 chr6D 90.067 1198 75 16 1529 2705 86644472 86643298 0.000000e+00 1513.0
3 TraesCS6D01G122300 chr6D 89.267 969 65 16 3634 4572 86642323 86641364 0.000000e+00 1177.0
4 TraesCS6D01G122300 chr6D 93.543 635 34 5 2702 3334 86643241 86642612 0.000000e+00 939.0
5 TraesCS6D01G122300 chr6D 91.135 643 34 3 857 1492 86650556 86649930 0.000000e+00 850.0
6 TraesCS6D01G122300 chr6D 89.602 452 33 10 6205 6654 86639855 86639416 5.010000e-156 562.0
7 TraesCS6D01G122300 chr6D 85.115 262 28 4 5870 6128 86640114 86639861 2.650000e-64 257.0
8 TraesCS6D01G122300 chr6D 89.326 178 17 2 3454 3631 123159233 123159058 9.660000e-54 222.0
9 TraesCS6D01G122300 chr6D 86.957 184 23 1 3455 3638 80113859 80113677 9.730000e-49 206.0
10 TraesCS6D01G122300 chr6D 100.000 32 0 0 1502 1533 86649932 86649901 8.020000e-05 60.2
11 TraesCS6D01G122300 chr6A 90.208 3707 219 63 3634 7260 104512193 104515835 0.000000e+00 4702.0
12 TraesCS6D01G122300 chr6A 92.474 1342 61 14 764 2088 104509125 104510443 0.000000e+00 1882.0
13 TraesCS6D01G122300 chr6A 90.497 1389 100 23 2084 3450 104510694 104512072 0.000000e+00 1805.0
14 TraesCS6D01G122300 chr6A 91.921 1015 46 13 1020 2013 104310321 104309322 0.000000e+00 1387.0
15 TraesCS6D01G122300 chr6A 88.740 968 63 18 4785 5751 104305405 104304483 0.000000e+00 1142.0
16 TraesCS6D01G122300 chr6A 91.654 635 45 6 2702 3334 104308494 104307866 0.000000e+00 872.0
17 TraesCS6D01G122300 chr6A 87.011 716 47 11 2011 2705 104309241 104308551 0.000000e+00 765.0
18 TraesCS6D01G122300 chr6A 84.530 808 71 21 5870 6654 104304448 104303672 0.000000e+00 750.0
19 TraesCS6D01G122300 chr6A 86.942 605 51 10 3988 4572 104306502 104305906 0.000000e+00 654.0
20 TraesCS6D01G122300 chr6A 91.698 265 17 3 3633 3896 104307525 104307265 5.460000e-96 363.0
21 TraesCS6D01G122300 chr6A 93.367 196 9 2 4595 4786 104305839 104305644 3.380000e-73 287.0
22 TraesCS6D01G122300 chr6A 88.108 185 20 2 3454 3638 157963787 157963969 1.250000e-52 219.0
23 TraesCS6D01G122300 chr6A 87.432 183 21 2 1 182 104400130 104399949 7.520000e-50 209.0
24 TraesCS6D01G122300 chr6A 92.500 120 9 0 421 540 104398686 104398567 9.870000e-39 172.0
25 TraesCS6D01G122300 chr6A 98.837 86 1 0 7175 7260 104516281 104516366 3.580000e-33 154.0
26 TraesCS6D01G122300 chr6A 86.260 131 14 3 6854 6984 104303527 104303401 1.000000e-28 139.0
27 TraesCS6D01G122300 chr6B 93.314 2019 94 24 4595 6603 164381238 164383225 0.000000e+00 2942.0
28 TraesCS6D01G122300 chr6B 90.407 1793 117 28 1691 3450 164377525 164379295 0.000000e+00 2307.0
29 TraesCS6D01G122300 chr6B 91.987 1273 80 15 422 1693 164376158 164377409 0.000000e+00 1766.0
30 TraesCS6D01G122300 chr6B 85.885 1006 76 26 3634 4597 164379424 164380405 0.000000e+00 1011.0
31 TraesCS6D01G122300 chr6B 87.174 881 74 17 3634 4480 164215247 164214372 0.000000e+00 965.0
32 TraesCS6D01G122300 chr6B 91.325 634 52 2 5105 5735 164057200 164056567 0.000000e+00 863.0
33 TraesCS6D01G122300 chr6B 84.843 574 45 19 2908 3457 164215911 164215356 2.350000e-149 540.0
34 TraesCS6D01G122300 chr6B 90.361 415 30 7 6854 7261 164383445 164383856 3.040000e-148 536.0
35 TraesCS6D01G122300 chr6B 86.019 515 28 8 4598 5110 164137325 164136853 5.120000e-141 512.0
36 TraesCS6D01G122300 chr6B 87.866 239 23 4 1 238 164374827 164375060 7.310000e-70 276.0
37 TraesCS6D01G122300 chr6B 88.889 180 16 4 3454 3631 217169261 217169084 1.250000e-52 219.0
38 TraesCS6D01G122300 chr6B 86.170 188 24 2 3451 3638 262375811 262375626 1.260000e-47 202.0
39 TraesCS6D01G122300 chr6B 100.000 81 0 0 7181 7261 164384528 164384608 4.630000e-32 150.0
40 TraesCS6D01G122300 chr3B 89.688 737 44 12 2210 2945 412911102 412911807 0.000000e+00 911.0
41 TraesCS6D01G122300 chr2D 94.325 511 27 2 2435 2945 55263722 55264230 0.000000e+00 782.0
42 TraesCS6D01G122300 chr2D 86.634 202 19 8 7046 7244 443239819 443240015 4.500000e-52 217.0
43 TraesCS6D01G122300 chr5A 93.933 511 29 2 2435 2945 48731016 48731524 0.000000e+00 771.0
44 TraesCS6D01G122300 chr5B 93.164 512 32 3 2435 2945 14287311 14287820 0.000000e+00 749.0
45 TraesCS6D01G122300 chr5B 92.398 513 33 4 2435 2945 233908161 233907653 0.000000e+00 726.0
46 TraesCS6D01G122300 chr5B 84.151 530 43 19 2806 3329 684018228 684018722 6.720000e-130 475.0
47 TraesCS6D01G122300 chr5B 96.859 191 5 1 235 425 698642188 698641999 1.200000e-82 318.0
48 TraesCS6D01G122300 chr2B 97.917 192 4 0 235 426 68035810 68036001 4.280000e-87 333.0
49 TraesCS6D01G122300 chr2B 83.575 207 15 13 7046 7246 522198010 522198203 7.630000e-40 176.0
50 TraesCS6D01G122300 chr5D 97.906 191 4 0 235 425 446576047 446575857 1.540000e-86 331.0
51 TraesCS6D01G122300 chr5D 96.859 191 5 1 234 424 421386161 421386350 1.200000e-82 318.0
52 TraesCS6D01G122300 chr1D 96.429 196 7 0 229 424 473696516 473696321 2.580000e-84 324.0
53 TraesCS6D01G122300 chrUn 96.859 191 6 0 238 428 175473803 175473993 3.330000e-83 320.0
54 TraesCS6D01G122300 chrUn 94.215 121 7 0 7116 7236 305661927 305662047 1.270000e-42 185.0
55 TraesCS6D01G122300 chrUn 94.215 121 7 0 7116 7236 352665761 352665881 1.270000e-42 185.0
56 TraesCS6D01G122300 chrUn 94.215 121 7 0 7116 7236 463428269 463428149 1.270000e-42 185.0
57 TraesCS6D01G122300 chr1B 96.875 192 5 1 235 425 109870810 109871001 3.330000e-83 320.0
58 TraesCS6D01G122300 chr1B 86.559 186 24 1 3453 3638 578054195 578054011 3.500000e-48 204.0
59 TraesCS6D01G122300 chr7D 96.842 190 6 0 236 425 433896377 433896566 1.200000e-82 318.0
60 TraesCS6D01G122300 chr7D 88.281 128 15 0 4732 4859 552964675 552964802 3.580000e-33 154.0
61 TraesCS6D01G122300 chr4B 96.859 191 5 1 235 425 496964684 496964495 1.200000e-82 318.0
62 TraesCS6D01G122300 chr7A 78.718 390 64 13 5053 5437 638709726 638710101 7.420000e-60 243.0
63 TraesCS6D01G122300 chr7A 92.105 76 6 0 2339 2414 638707918 638707993 2.820000e-19 108.0
64 TraesCS6D01G122300 chr4A 88.043 184 21 1 3456 3639 61580125 61579943 4.500000e-52 217.0
65 TraesCS6D01G122300 chr4A 94.215 121 7 0 7116 7236 443647877 443647757 1.270000e-42 185.0
66 TraesCS6D01G122300 chr7B 77.238 391 70 16 5052 5437 599415201 599415577 2.090000e-50 211.0
67 TraesCS6D01G122300 chr7B 86.702 188 22 3 3453 3639 186822358 186822543 9.730000e-49 206.0
68 TraesCS6D01G122300 chr7B 87.500 128 16 0 4732 4859 598477257 598477384 1.660000e-31 148.0
69 TraesCS6D01G122300 chr7B 86.719 128 17 0 4732 4859 644551849 644551976 7.740000e-30 143.0
70 TraesCS6D01G122300 chr2A 87.432 183 20 2 3456 3638 747153988 747154167 2.710000e-49 207.0
71 TraesCS6D01G122300 chr2A 82.456 114 14 6 7046 7156 586893011 586893121 2.200000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G122300 chr6D 86728109 86735508 7399 False 13666.000000 13666 100.000000 1 7400 1 chr6D.!!$F1 7399
1 TraesCS6D01G122300 chr6D 86639416 86644472 5056 True 1008.333333 1602 89.908833 1529 6654 6 chr6D.!!$R3 5125
2 TraesCS6D01G122300 chr6D 86649901 86650556 655 True 455.100000 850 95.567500 857 1533 2 chr6D.!!$R4 676
3 TraesCS6D01G122300 chr6A 104509125 104516366 7241 False 2135.750000 4702 93.004000 764 7260 4 chr6A.!!$F2 6496
4 TraesCS6D01G122300 chr6A 104303401 104310321 6920 True 706.555556 1387 89.124778 1020 6984 9 chr6A.!!$R1 5964
5 TraesCS6D01G122300 chr6B 164374827 164384608 9781 False 1284.000000 2942 91.402857 1 7261 7 chr6B.!!$F1 7260
6 TraesCS6D01G122300 chr6B 164056567 164057200 633 True 863.000000 863 91.325000 5105 5735 1 chr6B.!!$R1 630
7 TraesCS6D01G122300 chr6B 164214372 164215911 1539 True 752.500000 965 86.008500 2908 4480 2 chr6B.!!$R5 1572
8 TraesCS6D01G122300 chr3B 412911102 412911807 705 False 911.000000 911 89.688000 2210 2945 1 chr3B.!!$F1 735
9 TraesCS6D01G122300 chr2D 55263722 55264230 508 False 782.000000 782 94.325000 2435 2945 1 chr2D.!!$F1 510
10 TraesCS6D01G122300 chr5A 48731016 48731524 508 False 771.000000 771 93.933000 2435 2945 1 chr5A.!!$F1 510
11 TraesCS6D01G122300 chr5B 14287311 14287820 509 False 749.000000 749 93.164000 2435 2945 1 chr5B.!!$F1 510
12 TraesCS6D01G122300 chr5B 233907653 233908161 508 True 726.000000 726 92.398000 2435 2945 1 chr5B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.034089 AAAAAGGAGGAGGATGCGGG 60.034 55.000 0.00 0.00 0.00 6.13 F
260 262 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85 F
463 1379 0.251341 GGGCAAGGACAACTGATGGT 60.251 55.000 0.00 0.00 0.00 3.55 F
1747 2830 0.955178 ACTCAGTCACTGTGAGGTCG 59.045 55.000 13.82 3.38 44.96 4.79 F
2201 3632 0.908198 GGAGAGATGTGCACCCTCTT 59.092 55.000 28.38 17.81 37.40 2.85 F
2798 4316 1.014352 CAGTTACAACATAGGCCCGC 58.986 55.000 0.00 0.00 0.00 6.13 F
3480 5134 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63 F
4146 6492 1.014352 CCCGCAAATACTAGTGGCAC 58.986 55.000 10.29 10.29 34.10 5.01 F
4318 6691 1.474879 GCTGACTAGACTGAGGTCCAC 59.525 57.143 0.00 0.00 43.05 4.02 F
6009 9519 0.522626 TGCATTTGCCATGACAGACG 59.477 50.000 0.00 0.00 41.18 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 2090 1.077357 GAGGAGAGGTGAGGAGCGA 60.077 63.158 0.00 0.00 0.00 4.93 R
1245 2186 1.829096 GTAGGAGAGGGAGGCGGTC 60.829 68.421 0.00 0.00 0.00 4.79 R
1982 3073 2.178580 ACCCCACATTAATGTTGGCAG 58.821 47.619 26.21 18.39 41.04 4.85 R
3460 5114 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30 R
4082 6427 0.459759 GTAGCGGTAGTGGCCACTTC 60.460 60.000 41.69 34.95 42.54 3.01 R
4117 6462 1.476488 GTATTTGCGGGTTGCTGGAAT 59.524 47.619 0.00 0.00 46.63 3.01 R
5296 8788 0.252197 GGGCCCTTTAGAAGAAGCGA 59.748 55.000 17.04 0.00 0.00 4.93 R
5537 9041 1.202639 TCCATTCTGCGTGCGGATAAT 60.203 47.619 3.88 0.00 0.00 1.28 R
6026 9536 1.369091 CTTGGTCACCTGCATACCGC 61.369 60.000 0.00 0.00 42.89 5.68 R
6959 10558 0.234884 CCGTGCCTGAACGAAAAGAC 59.765 55.000 0.00 0.00 46.49 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.361668 CGACATGGCCTTGAACGAGG 61.362 60.000 24.48 3.86 39.93 4.63
40 41 1.273606 AGGAAGTCATCTGTGTCCACG 59.726 52.381 0.00 0.00 0.00 4.94
70 71 6.593382 CACATCCTCTAGAAGTGAAAAAGGAG 59.407 42.308 7.98 0.00 45.12 3.69
76 77 6.026186 TCTAGAAGTGAAAAAGGAGGAGGAT 58.974 40.000 0.00 0.00 0.00 3.24
79 80 1.740025 GTGAAAAAGGAGGAGGATGCG 59.260 52.381 0.00 0.00 0.00 4.73
80 81 1.340017 TGAAAAAGGAGGAGGATGCGG 60.340 52.381 0.00 0.00 0.00 5.69
81 82 0.034089 AAAAAGGAGGAGGATGCGGG 60.034 55.000 0.00 0.00 0.00 6.13
105 106 2.962569 CACGAGAGCAGAACCGGA 59.037 61.111 9.46 0.00 0.00 5.14
154 155 4.960332 TCCAAAGAGAAGGAGGAGGATAA 58.040 43.478 0.00 0.00 0.00 1.75
156 157 4.102367 CCAAAGAGAAGGAGGAGGATAAGG 59.898 50.000 0.00 0.00 0.00 2.69
159 160 2.888414 GAGAAGGAGGAGGATAAGGACG 59.112 54.545 0.00 0.00 0.00 4.79
160 161 1.964933 GAAGGAGGAGGATAAGGACGG 59.035 57.143 0.00 0.00 0.00 4.79
161 162 1.232909 AGGAGGAGGATAAGGACGGA 58.767 55.000 0.00 0.00 0.00 4.69
163 164 2.994581 AGGAGGAGGATAAGGACGGATA 59.005 50.000 0.00 0.00 0.00 2.59
172 174 4.022155 GGATAAGGACGGATAGACAACTCC 60.022 50.000 0.00 0.00 0.00 3.85
182 184 1.810030 GACAACTCCGACGATGGGC 60.810 63.158 0.00 0.00 0.00 5.36
183 185 2.227089 GACAACTCCGACGATGGGCT 62.227 60.000 0.00 0.00 0.00 5.19
186 188 4.227134 CTCCGACGATGGGCTGGG 62.227 72.222 0.00 0.00 0.00 4.45
190 192 3.785859 GACGATGGGCTGGGCAGA 61.786 66.667 0.00 0.00 0.00 4.26
203 205 2.429907 GCAGATCCGGCTCGATCG 60.430 66.667 9.36 9.36 42.94 3.69
230 232 1.267632 CGTCTTCGAGCTCTACTTCCG 60.268 57.143 12.85 3.31 39.71 4.30
238 240 3.440228 GAGCTCTACTTCCGCAACTAAG 58.560 50.000 6.43 0.00 0.00 2.18
239 241 2.166664 AGCTCTACTTCCGCAACTAAGG 59.833 50.000 0.00 0.00 0.00 2.69
240 242 2.738964 GCTCTACTTCCGCAACTAAGGG 60.739 54.545 0.00 0.00 0.00 3.95
242 244 0.906775 TACTTCCGCAACTAAGGGGG 59.093 55.000 0.00 0.00 41.59 5.40
243 245 1.131928 ACTTCCGCAACTAAGGGGGT 61.132 55.000 0.00 0.00 41.59 4.95
244 246 0.676782 CTTCCGCAACTAAGGGGGTG 60.677 60.000 0.00 0.00 41.59 4.61
245 247 1.420532 TTCCGCAACTAAGGGGGTGT 61.421 55.000 0.00 0.00 41.59 4.16
247 249 0.538746 CCGCAACTAAGGGGGTGTTT 60.539 55.000 0.00 0.00 37.91 2.83
248 250 0.596082 CGCAACTAAGGGGGTGTTTG 59.404 55.000 0.00 0.00 0.00 2.93
249 251 0.966179 GCAACTAAGGGGGTGTTTGG 59.034 55.000 0.00 0.00 0.00 3.28
250 252 1.756333 GCAACTAAGGGGGTGTTTGGT 60.756 52.381 0.00 0.00 0.00 3.67
251 253 2.673258 CAACTAAGGGGGTGTTTGGTT 58.327 47.619 0.00 0.00 0.00 3.67
253 255 1.146359 ACTAAGGGGGTGTTTGGTTCC 59.854 52.381 0.00 0.00 0.00 3.62
254 256 1.146152 CTAAGGGGGTGTTTGGTTCCA 59.854 52.381 0.00 0.00 0.00 3.53
256 258 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
258 260 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
259 261 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
260 262 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
261 263 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
262 264 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
263 265 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
264 266 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
301 303 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
302 304 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
303 305 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
304 306 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
318 320 5.897377 CCAAACAGGTAGGGACTATTTTG 57.103 43.478 0.00 0.00 45.60 2.44
319 321 4.705023 CCAAACAGGTAGGGACTATTTTGG 59.295 45.833 0.00 0.00 45.60 3.28
320 322 4.586306 AACAGGTAGGGACTATTTTGGG 57.414 45.455 0.00 0.00 45.60 4.12
322 324 3.522343 ACAGGTAGGGACTATTTTGGGAC 59.478 47.826 0.00 0.00 45.60 4.46
323 325 3.780850 CAGGTAGGGACTATTTTGGGACT 59.219 47.826 0.00 0.00 45.60 3.85
326 328 5.315109 AGGTAGGGACTATTTTGGGACTTTT 59.685 40.000 0.00 0.00 45.60 2.27
329 331 4.283467 AGGGACTATTTTGGGACTTTTTGC 59.717 41.667 0.00 0.00 36.02 3.68
330 332 4.283467 GGGACTATTTTGGGACTTTTTGCT 59.717 41.667 0.00 0.00 0.00 3.91
331 333 5.479027 GGGACTATTTTGGGACTTTTTGCTA 59.521 40.000 0.00 0.00 0.00 3.49
333 335 7.438564 GGACTATTTTGGGACTTTTTGCTAAA 58.561 34.615 0.00 0.00 0.00 1.85
346 348 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
348 350 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
349 351 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
350 352 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
351 353 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
352 354 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
353 355 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
355 357 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
356 358 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
359 361 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
360 362 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
361 363 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
362 364 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
363 365 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
365 367 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
367 369 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
368 370 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
369 371 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
370 372 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
371 373 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
372 374 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
374 376 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
376 378 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
377 379 7.148000 CCTTGAGAGTCTTTTTCAAAAAGTCCT 60.148 37.037 19.82 16.49 31.11 3.85
379 381 8.438676 TGAGAGTCTTTTTCAAAAAGTCCTAG 57.561 34.615 19.82 0.00 0.00 3.02
380 382 7.499232 TGAGAGTCTTTTTCAAAAAGTCCTAGG 59.501 37.037 19.82 0.82 0.00 3.02
381 383 6.773200 AGAGTCTTTTTCAAAAAGTCCTAGGG 59.227 38.462 19.82 0.00 0.00 3.53
414 416 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
415 417 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
417 419 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
419 421 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
420 422 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
424 1340 4.086706 AGAGAACCAAACACCACCTAAG 57.913 45.455 0.00 0.00 0.00 2.18
435 1351 1.282157 ACCACCTAAGATGTCAAGGGC 59.718 52.381 6.44 0.00 34.52 5.19
436 1352 1.281867 CCACCTAAGATGTCAAGGGCA 59.718 52.381 6.44 0.00 34.52 5.36
437 1353 2.359900 CACCTAAGATGTCAAGGGCAC 58.640 52.381 6.44 0.00 34.52 5.01
463 1379 0.251341 GGGCAAGGACAACTGATGGT 60.251 55.000 0.00 0.00 0.00 3.55
523 1439 4.192317 GTTCTCTCCATGTAACATGTCCC 58.808 47.826 0.00 0.00 0.00 4.46
530 1446 4.704540 TCCATGTAACATGTCCCATTGAAC 59.295 41.667 0.00 0.00 0.00 3.18
591 1507 2.294233 TCCTTTTCACTGTGAGCATTGC 59.706 45.455 10.77 0.00 0.00 3.56
614 1530 6.921307 TGCATAATTAGCTCTTGCAAATGATG 59.079 34.615 7.97 0.08 40.11 3.07
628 1544 6.563422 TGCAAATGATGTAAGGCTATTTGAC 58.437 36.000 17.87 11.40 39.73 3.18
642 1558 9.463443 AAGGCTATTTGACGATTAATAAAATGC 57.537 29.630 0.00 0.00 0.00 3.56
649 1565 6.843208 TGACGATTAATAAAATGCCACGAAA 58.157 32.000 0.00 0.00 0.00 3.46
653 1569 6.140737 CGATTAATAAAATGCCACGAAAGCTC 59.859 38.462 0.00 0.00 0.00 4.09
658 1574 2.436824 GCCACGAAAGCTCCTCCC 60.437 66.667 0.00 0.00 0.00 4.30
663 1579 1.065854 CACGAAAGCTCCTCCCATCTT 60.066 52.381 0.00 0.00 0.00 2.40
675 1592 4.223032 TCCTCCCATCTTAGTGACTGAAAC 59.777 45.833 0.00 0.00 0.00 2.78
681 1598 6.934645 CCCATCTTAGTGACTGAAACTTAACA 59.065 38.462 0.00 0.00 0.00 2.41
686 1603 9.095065 TCTTAGTGACTGAAACTTAACAAAGTC 57.905 33.333 0.00 0.00 35.66 3.01
689 1606 6.255887 AGTGACTGAAACTTAACAAAGTCTCG 59.744 38.462 0.00 0.00 36.01 4.04
690 1607 6.255020 GTGACTGAAACTTAACAAAGTCTCGA 59.745 38.462 0.00 0.00 36.01 4.04
695 1612 7.851508 TGAAACTTAACAAAGTCTCGATCAAG 58.148 34.615 0.00 0.00 31.53 3.02
706 1623 3.670991 GTCTCGATCAAGTGACAGAACAC 59.329 47.826 0.00 0.00 40.60 3.32
708 1625 4.051237 CTCGATCAAGTGACAGAACACAA 58.949 43.478 0.00 0.00 42.45 3.33
710 1627 4.507756 TCGATCAAGTGACAGAACACAAAG 59.492 41.667 0.00 0.00 42.45 2.77
711 1628 4.507756 CGATCAAGTGACAGAACACAAAGA 59.492 41.667 0.00 0.00 42.45 2.52
712 1629 5.006649 CGATCAAGTGACAGAACACAAAGAA 59.993 40.000 0.00 0.00 42.45 2.52
713 1630 6.456853 CGATCAAGTGACAGAACACAAAGAAA 60.457 38.462 0.00 0.00 42.45 2.52
714 1631 6.567687 TCAAGTGACAGAACACAAAGAAAA 57.432 33.333 0.00 0.00 42.45 2.29
715 1632 7.156876 TCAAGTGACAGAACACAAAGAAAAT 57.843 32.000 0.00 0.00 42.45 1.82
716 1633 7.601856 TCAAGTGACAGAACACAAAGAAAATT 58.398 30.769 0.00 0.00 42.45 1.82
717 1634 8.087750 TCAAGTGACAGAACACAAAGAAAATTT 58.912 29.630 0.00 0.00 42.45 1.82
718 1635 9.352784 CAAGTGACAGAACACAAAGAAAATTTA 57.647 29.630 0.00 0.00 42.45 1.40
719 1636 8.911247 AGTGACAGAACACAAAGAAAATTTAC 57.089 30.769 0.00 0.00 42.45 2.01
720 1637 8.519526 AGTGACAGAACACAAAGAAAATTTACA 58.480 29.630 0.00 0.00 42.45 2.41
721 1638 8.583765 GTGACAGAACACAAAGAAAATTTACAC 58.416 33.333 0.00 0.00 40.11 2.90
722 1639 8.300286 TGACAGAACACAAAGAAAATTTACACA 58.700 29.630 0.00 0.00 0.00 3.72
723 1640 8.687824 ACAGAACACAAAGAAAATTTACACAG 57.312 30.769 0.00 0.00 0.00 3.66
724 1641 8.519526 ACAGAACACAAAGAAAATTTACACAGA 58.480 29.630 0.00 0.00 0.00 3.41
725 1642 9.520204 CAGAACACAAAGAAAATTTACACAGAT 57.480 29.630 0.00 0.00 0.00 2.90
726 1643 9.736023 AGAACACAAAGAAAATTTACACAGATC 57.264 29.630 0.00 0.00 0.00 2.75
727 1644 9.736023 GAACACAAAGAAAATTTACACAGATCT 57.264 29.630 0.00 0.00 0.00 2.75
728 1645 9.736023 AACACAAAGAAAATTTACACAGATCTC 57.264 29.630 0.00 0.00 0.00 2.75
729 1646 8.352942 ACACAAAGAAAATTTACACAGATCTCC 58.647 33.333 0.00 0.00 0.00 3.71
730 1647 8.352201 CACAAAGAAAATTTACACAGATCTCCA 58.648 33.333 0.00 0.00 0.00 3.86
731 1648 8.352942 ACAAAGAAAATTTACACAGATCTCCAC 58.647 33.333 0.00 0.00 0.00 4.02
732 1649 6.727824 AGAAAATTTACACAGATCTCCACG 57.272 37.500 0.00 0.00 0.00 4.94
733 1650 6.231211 AGAAAATTTACACAGATCTCCACGT 58.769 36.000 0.00 0.00 0.00 4.49
734 1651 6.710744 AGAAAATTTACACAGATCTCCACGTT 59.289 34.615 0.00 0.00 0.00 3.99
735 1652 5.862924 AATTTACACAGATCTCCACGTTG 57.137 39.130 0.00 0.00 0.00 4.10
736 1653 4.594123 TTTACACAGATCTCCACGTTGA 57.406 40.909 0.00 0.00 0.00 3.18
737 1654 4.801330 TTACACAGATCTCCACGTTGAT 57.199 40.909 0.00 0.00 0.00 2.57
738 1655 3.238108 ACACAGATCTCCACGTTGATC 57.762 47.619 12.43 12.43 39.32 2.92
740 1657 4.017126 ACACAGATCTCCACGTTGATCTA 58.983 43.478 18.93 0.00 45.13 1.98
741 1658 4.462834 ACACAGATCTCCACGTTGATCTAA 59.537 41.667 18.93 0.00 45.13 2.10
742 1659 4.800993 CACAGATCTCCACGTTGATCTAAC 59.199 45.833 18.93 0.00 45.13 2.34
743 1660 4.707448 ACAGATCTCCACGTTGATCTAACT 59.293 41.667 18.93 7.60 45.13 2.24
746 1663 7.068839 ACAGATCTCCACGTTGATCTAACTAAT 59.931 37.037 18.93 5.10 45.13 1.73
975 1910 1.654954 CTACACTCCCACTCCCGACG 61.655 65.000 0.00 0.00 0.00 5.12
1236 2177 4.148825 CTCGCCCTTGAGGACCCG 62.149 72.222 0.00 0.00 38.24 5.28
1550 2508 8.080417 ACTTCTGTTCTGATGAATTCAATTGTG 58.920 33.333 13.09 2.00 34.40 3.33
1747 2830 0.955178 ACTCAGTCACTGTGAGGTCG 59.045 55.000 13.82 3.38 44.96 4.79
1758 2841 3.056107 ACTGTGAGGTCGCTTATTGCTTA 60.056 43.478 0.00 0.00 40.11 3.09
1774 2857 3.735591 TGCTTAACCACACAACCTAGAC 58.264 45.455 0.00 0.00 0.00 2.59
1903 2986 4.163458 TGTGACCCATAGTTCCATACTTCC 59.837 45.833 0.00 0.00 38.33 3.46
1904 2987 4.163458 GTGACCCATAGTTCCATACTTCCA 59.837 45.833 0.00 0.00 38.33 3.53
1905 2988 4.975147 TGACCCATAGTTCCATACTTCCAT 59.025 41.667 0.00 0.00 38.33 3.41
1906 2989 6.042781 GTGACCCATAGTTCCATACTTCCATA 59.957 42.308 0.00 0.00 38.33 2.74
1907 2990 6.042781 TGACCCATAGTTCCATACTTCCATAC 59.957 42.308 0.00 0.00 38.33 2.39
1908 2991 6.151049 ACCCATAGTTCCATACTTCCATACT 58.849 40.000 0.00 0.00 38.33 2.12
1909 2992 6.619852 ACCCATAGTTCCATACTTCCATACTT 59.380 38.462 0.00 0.00 38.33 2.24
1910 2993 7.162082 CCCATAGTTCCATACTTCCATACTTC 58.838 42.308 0.00 0.00 38.33 3.01
2048 3222 6.668541 TTCATAGACTTCTGTTAGCAATGC 57.331 37.500 0.00 0.00 0.00 3.56
2082 3513 7.824289 AGCACAGAATACTTTCTATGTAAAGCA 59.176 33.333 0.00 0.00 40.28 3.91
2096 3527 2.806608 AAAGCACAATGCCAGTTCTG 57.193 45.000 0.00 0.00 46.52 3.02
2107 3538 5.733620 ATGCCAGTTCTGATGAAAACATT 57.266 34.783 1.00 0.00 33.52 2.71
2137 3568 5.570439 GCCATGTTTTTGTGATATTTCCCCA 60.570 40.000 0.00 0.00 0.00 4.96
2201 3632 0.908198 GGAGAGATGTGCACCCTCTT 59.092 55.000 28.38 17.81 37.40 2.85
2208 3639 6.904626 AGAGATGTGCACCCTCTTTTATATT 58.095 36.000 24.65 8.21 33.86 1.28
2225 3656 9.563898 CTTTTATATTTACCAACTTTTCGGTCC 57.436 33.333 0.00 0.00 36.69 4.46
2228 3659 5.855740 ATTTACCAACTTTTCGGTCCAAA 57.144 34.783 0.00 0.00 36.69 3.28
2229 3660 5.656213 TTTACCAACTTTTCGGTCCAAAA 57.344 34.783 0.00 0.00 36.69 2.44
2230 3661 5.656213 TTACCAACTTTTCGGTCCAAAAA 57.344 34.783 0.00 0.00 36.69 1.94
2494 3943 5.207033 GTTTCAATGGTGCAATGCTTTTTC 58.793 37.500 6.82 0.00 0.00 2.29
2586 4042 3.743521 TGTTGCTTAAGTGTCATCAGCT 58.256 40.909 4.02 0.00 0.00 4.24
2608 4064 9.831737 CAGCTTACACCTTCAATATATTTATGC 57.168 33.333 0.00 0.00 0.00 3.14
2747 4265 5.123979 CCAATTTCTTAAGCAGTGGGTAGTC 59.876 44.000 11.28 0.00 0.00 2.59
2797 4315 2.684001 TCAGTTACAACATAGGCCCG 57.316 50.000 0.00 0.00 0.00 6.13
2798 4316 1.014352 CAGTTACAACATAGGCCCGC 58.986 55.000 0.00 0.00 0.00 6.13
2930 4448 4.381718 GGAAAGACCAGACGTAAGTGCTAT 60.382 45.833 0.00 0.00 45.69 2.97
3182 4702 7.501225 TCGGGTTCATCTTAAGGATAATTTTCC 59.499 37.037 6.82 6.82 35.90 3.13
3247 4769 5.128919 AGTCACTGTTCTTCTTCATGCTTT 58.871 37.500 0.00 0.00 0.00 3.51
3255 4777 8.256611 TGTTCTTCTTCATGCTTTACTATGAC 57.743 34.615 0.00 0.00 33.36 3.06
3330 4858 6.360370 ACACTGGTGAATTAGTGACTACAT 57.640 37.500 12.05 0.00 45.46 2.29
3337 4865 8.318412 TGGTGAATTAGTGACTACATTGTACAT 58.682 33.333 0.00 0.00 0.00 2.29
3338 4866 9.162764 GGTGAATTAGTGACTACATTGTACATT 57.837 33.333 0.00 0.00 0.00 2.71
3339 4867 9.973246 GTGAATTAGTGACTACATTGTACATTG 57.027 33.333 14.64 14.64 0.00 2.82
3344 4872 9.719355 TTAGTGACTACATTGTACATTGACATT 57.281 29.630 21.38 14.09 0.00 2.71
3346 4874 7.877612 AGTGACTACATTGTACATTGACATTGA 59.122 33.333 21.38 0.00 35.32 2.57
3401 5048 4.623122 AAATTTACAACATCGCGTTTGC 57.377 36.364 5.77 0.00 34.86 3.68
3465 5119 5.531122 TGAACTAATTGATACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
3466 5120 4.960469 TGAACTAATTGATACTCCCTCCGT 59.040 41.667 0.00 0.00 0.00 4.69
3468 5122 5.952347 ACTAATTGATACTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
3470 5124 5.661759 ACTAATTGATACTCCCTCCGTTTCT 59.338 40.000 0.00 0.00 0.00 2.52
3471 5125 5.437191 AATTGATACTCCCTCCGTTTCTT 57.563 39.130 0.00 0.00 0.00 2.52
3472 5126 4.903045 TTGATACTCCCTCCGTTTCTTT 57.097 40.909 0.00 0.00 0.00 2.52
3473 5127 4.903045 TGATACTCCCTCCGTTTCTTTT 57.097 40.909 0.00 0.00 0.00 2.27
3475 5129 6.363167 TGATACTCCCTCCGTTTCTTTTTA 57.637 37.500 0.00 0.00 0.00 1.52
3476 5130 6.168389 TGATACTCCCTCCGTTTCTTTTTAC 58.832 40.000 0.00 0.00 0.00 2.01
3478 5132 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
3479 5133 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
3480 5134 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
3482 5136 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
3484 5138 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
3488 5142 7.333921 TCCGTTTCTTTTTACTCCGCATATTAA 59.666 33.333 0.00 0.00 0.00 1.40
3489 5143 7.638683 CCGTTTCTTTTTACTCCGCATATTAAG 59.361 37.037 0.00 0.00 0.00 1.85
3490 5144 8.385111 CGTTTCTTTTTACTCCGCATATTAAGA 58.615 33.333 0.00 0.00 0.00 2.10
3525 5179 4.705337 AAACTACGCAAAGTTTGACCAA 57.295 36.364 19.82 0.55 45.60 3.67
3526 5180 4.705337 AACTACGCAAAGTTTGACCAAA 57.295 36.364 19.82 0.00 36.26 3.28
3527 5181 4.705337 ACTACGCAAAGTTTGACCAAAA 57.295 36.364 19.82 0.00 31.33 2.44
3528 5182 5.257082 ACTACGCAAAGTTTGACCAAAAT 57.743 34.783 19.82 0.00 31.33 1.82
3529 5183 5.656480 ACTACGCAAAGTTTGACCAAAATT 58.344 33.333 19.82 2.78 39.84 1.82
3530 5184 6.797454 ACTACGCAAAGTTTGACCAAAATTA 58.203 32.000 19.82 0.00 37.58 1.40
3531 5185 7.430441 ACTACGCAAAGTTTGACCAAAATTAT 58.570 30.769 19.82 0.00 37.58 1.28
3532 5186 8.569641 ACTACGCAAAGTTTGACCAAAATTATA 58.430 29.630 19.82 0.92 37.58 0.98
3533 5187 9.567848 CTACGCAAAGTTTGACCAAAATTATAT 57.432 29.630 19.82 0.00 37.58 0.86
3534 5188 8.825667 ACGCAAAGTTTGACCAAAATTATATT 57.174 26.923 19.82 0.00 37.58 1.28
3535 5189 9.915629 ACGCAAAGTTTGACCAAAATTATATTA 57.084 25.926 19.82 0.00 37.58 0.98
3602 5256 9.590451 AAAGTTAATTTCATGGTGCATCTAATG 57.410 29.630 0.00 0.00 0.00 1.90
3603 5257 8.523915 AGTTAATTTCATGGTGCATCTAATGA 57.476 30.769 0.00 0.00 0.00 2.57
3604 5258 9.139734 AGTTAATTTCATGGTGCATCTAATGAT 57.860 29.630 0.00 0.00 0.00 2.45
3608 5262 9.923143 AATTTCATGGTGCATCTAATGATATTG 57.077 29.630 12.24 0.00 32.81 1.90
3609 5263 8.694581 TTTCATGGTGCATCTAATGATATTGA 57.305 30.769 0.00 0.00 0.00 2.57
3610 5264 7.677454 TCATGGTGCATCTAATGATATTGAC 57.323 36.000 0.00 0.00 0.00 3.18
3611 5265 7.455891 TCATGGTGCATCTAATGATATTGACT 58.544 34.615 0.00 0.00 0.00 3.41
3612 5266 7.940688 TCATGGTGCATCTAATGATATTGACTT 59.059 33.333 0.00 0.00 0.00 3.01
3613 5267 7.734924 TGGTGCATCTAATGATATTGACTTC 57.265 36.000 0.00 0.00 0.00 3.01
3614 5268 6.424812 TGGTGCATCTAATGATATTGACTTCG 59.575 38.462 0.00 0.00 0.00 3.79
3615 5269 6.425114 GGTGCATCTAATGATATTGACTTCGT 59.575 38.462 0.00 0.00 0.00 3.85
3616 5270 7.598869 GGTGCATCTAATGATATTGACTTCGTA 59.401 37.037 0.00 0.00 0.00 3.43
3618 5272 9.710900 TGCATCTAATGATATTGACTTCGTATT 57.289 29.630 0.00 0.00 0.00 1.89
3632 5286 8.141835 TGACTTCGTATTATGAATGTTGATGG 57.858 34.615 0.00 0.00 0.00 3.51
3865 5530 7.338800 TGGAGGATTGCAATCTTTTAGATTC 57.661 36.000 32.48 16.38 42.67 2.52
3868 5533 8.473219 GGAGGATTGCAATCTTTTAGATTCTTT 58.527 33.333 32.48 4.19 42.67 2.52
3894 5865 9.403583 TCTATATGGGTTGTTTGATTTTAGGAC 57.596 33.333 0.00 0.00 0.00 3.85
4044 6379 3.127548 GGTGTGACATTGCAATCCTACAG 59.872 47.826 9.53 0.00 0.00 2.74
4046 6382 4.216257 GTGTGACATTGCAATCCTACAGTT 59.784 41.667 9.53 0.00 0.00 3.16
4049 6385 6.488344 TGTGACATTGCAATCCTACAGTTTTA 59.512 34.615 9.53 0.00 0.00 1.52
4082 6427 4.452114 TGTGTTCTGGAATCTTGTGAATCG 59.548 41.667 0.00 0.00 0.00 3.34
4117 6462 3.751175 CCGCTACCTTTCTGAAATTGACA 59.249 43.478 2.88 0.00 0.00 3.58
4120 6465 6.024049 CGCTACCTTTCTGAAATTGACATTC 58.976 40.000 2.88 0.00 0.00 2.67
4146 6492 1.014352 CCCGCAAATACTAGTGGCAC 58.986 55.000 10.29 10.29 34.10 5.01
4157 6504 6.803154 ATACTAGTGGCACTGAACTTTTTC 57.197 37.500 29.65 0.00 0.00 2.29
4179 6526 3.935203 CGTATTTTCTGTCATCAGTGGCT 59.065 43.478 0.00 0.00 41.91 4.75
4182 6529 4.836125 TTTTCTGTCATCAGTGGCTTTC 57.164 40.909 0.00 0.00 41.91 2.62
4187 6536 4.889409 TCTGTCATCAGTGGCTTTCTTTTT 59.111 37.500 0.00 0.00 41.91 1.94
4195 6544 9.859427 CATCAGTGGCTTTCTTTTTATAATTCA 57.141 29.630 0.00 0.00 0.00 2.57
4263 6619 9.549078 TTGATGTACTGTAAATCTTGTGTGTTA 57.451 29.630 16.76 0.00 0.00 2.41
4318 6691 1.474879 GCTGACTAGACTGAGGTCCAC 59.525 57.143 0.00 0.00 43.05 4.02
4323 6696 1.678627 CTAGACTGAGGTCCACCATCG 59.321 57.143 0.00 0.00 43.05 3.84
4344 6721 5.561679 TCGTAGGTATACTGCTGATCTGAT 58.438 41.667 3.42 0.00 0.00 2.90
4354 6731 5.752892 CTGCTGATCTGATGCAGTTTATT 57.247 39.130 17.33 0.00 46.23 1.40
4362 6739 5.809001 TCTGATGCAGTTTATTCTGAAGGT 58.191 37.500 0.00 0.00 37.61 3.50
4435 6812 4.941263 TGCTCAAATTAACCACTATTCGCT 59.059 37.500 0.00 0.00 0.00 4.93
4438 6815 7.119992 TGCTCAAATTAACCACTATTCGCTTAA 59.880 33.333 0.00 0.00 0.00 1.85
4451 6828 7.273381 CACTATTCGCTTAAAATGGGAGTTTTG 59.727 37.037 0.00 0.00 33.62 2.44
4489 6866 7.171653 TCAAATCAGGTGTACATACATTTCCA 58.828 34.615 0.00 0.00 38.63 3.53
4495 6878 9.521841 TCAGGTGTACATACATTTCCATTTTTA 57.478 29.630 0.00 0.00 38.63 1.52
4550 6937 7.510549 TTCTGGTTTCCTTCTTATGAAGTTG 57.489 36.000 15.14 3.73 46.07 3.16
4872 8355 3.821033 GGGTAAGTCAACAGTTGAATGCT 59.179 43.478 17.83 8.22 42.15 3.79
4942 8429 1.600957 CCAATCTGCTTCCATGCTACG 59.399 52.381 0.00 0.00 0.00 3.51
4968 8455 9.959749 GGTAATGAGAACATTGTTGTTTCTTTA 57.040 29.630 6.80 7.77 46.01 1.85
5161 8649 5.180117 CCTACCTGATATTGAAGAAATGGCG 59.820 44.000 0.00 0.00 0.00 5.69
5197 8685 4.283722 ACAAAGATGAGGAACCGAACTAGT 59.716 41.667 0.00 0.00 0.00 2.57
5226 8714 3.431922 TCCGTACATGTAAGCTACAGC 57.568 47.619 7.25 0.00 42.77 4.40
5227 8715 2.756207 TCCGTACATGTAAGCTACAGCA 59.244 45.455 7.25 0.00 42.77 4.41
5231 8719 5.276868 CCGTACATGTAAGCTACAGCAAATC 60.277 44.000 7.25 0.00 42.77 2.17
5277 8765 5.951747 AGTTCATTGCTTAGGGAATGCTTAA 59.048 36.000 13.33 1.67 46.32 1.85
5279 8767 6.395426 TCATTGCTTAGGGAATGCTTAATG 57.605 37.500 13.33 0.00 46.32 1.90
5296 8788 8.523915 TGCTTAATGGATGATCAAGTAATTGT 57.476 30.769 0.00 0.00 0.00 2.71
5298 8790 7.800380 GCTTAATGGATGATCAAGTAATTGTCG 59.200 37.037 0.00 0.00 0.00 4.35
5401 8896 1.674962 GAGAAAGTGATGATGGCAGCC 59.325 52.381 3.66 3.66 0.00 4.85
5662 9166 1.407437 GCACTGGGATACACAAGGGAG 60.407 57.143 0.00 0.00 39.74 4.30
5665 9169 1.137086 CTGGGATACACAAGGGAGACG 59.863 57.143 0.00 0.00 39.74 4.18
5757 9261 4.315803 CCCAACTTGGTGAGTACTACTTG 58.684 47.826 7.06 0.00 37.72 3.16
5808 9312 1.464608 CCTTGCAGACACATTACCACG 59.535 52.381 0.00 0.00 0.00 4.94
5826 9330 4.401202 ACCACGTTCCATCAAGTTCTTTTT 59.599 37.500 0.00 0.00 0.00 1.94
5827 9331 5.591067 ACCACGTTCCATCAAGTTCTTTTTA 59.409 36.000 0.00 0.00 0.00 1.52
5917 9421 2.668550 GCCCGGTTTCGAAGCAGT 60.669 61.111 14.20 0.00 39.00 4.40
5923 9427 1.429463 GGTTTCGAAGCAGTGATCGT 58.571 50.000 14.20 0.00 39.91 3.73
5936 9440 1.996191 GTGATCGTCTTCCAGACTTGC 59.004 52.381 2.54 0.00 42.92 4.01
6009 9519 0.522626 TGCATTTGCCATGACAGACG 59.477 50.000 0.00 0.00 41.18 4.18
6014 9524 4.675146 GCATTTGCCATGACAGACGTAAAT 60.675 41.667 0.00 0.00 34.31 1.40
6026 9536 9.882996 ATGACAGACGTAAATTTTGCATATATG 57.117 29.630 8.45 8.45 0.00 1.78
6156 9666 2.070049 CGTGTTCGTGATGACGCAT 58.930 52.632 0.00 0.00 45.68 4.73
6403 9913 1.015109 CATGTGCAGAGCATGAGACC 58.985 55.000 9.58 0.00 44.60 3.85
6487 10015 8.493607 TGATGTCCTCCTGATTTTGTTCATATA 58.506 33.333 0.00 0.00 0.00 0.86
6591 10121 1.078497 CACCGGCTAGATTGGTGCA 60.078 57.895 0.00 0.00 45.85 4.57
6593 10123 0.179045 ACCGGCTAGATTGGTGCATC 60.179 55.000 0.00 0.00 33.91 3.91
6675 10213 1.287425 GCGATAAAACCCCACGAGAG 58.713 55.000 0.00 0.00 0.00 3.20
6676 10214 1.935933 CGATAAAACCCCACGAGAGG 58.064 55.000 0.00 0.00 0.00 3.69
6682 10220 0.106419 AACCCCACGAGAGGCAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
6706 10244 7.427989 AGGAAATGCCAATTGTTCAGATATT 57.572 32.000 4.43 0.00 40.02 1.28
6743 10285 6.378710 AGCCAGTTCTCAGTTTCTTTTAAC 57.621 37.500 0.00 0.00 0.00 2.01
6766 10308 4.523943 CCCCTTTTGATTCTGTTCATGTGA 59.476 41.667 0.00 0.00 0.00 3.58
6776 10318 2.738846 CTGTTCATGTGACACCACTAGC 59.261 50.000 2.45 0.00 43.55 3.42
6777 10319 2.103941 TGTTCATGTGACACCACTAGCA 59.896 45.455 2.45 0.00 43.55 3.49
6779 10321 1.081892 CATGTGACACCACTAGCAGC 58.918 55.000 2.45 0.00 43.55 5.25
6781 10323 0.467804 TGTGACACCACTAGCAGCAA 59.532 50.000 2.45 0.00 43.55 3.91
6782 10324 1.151668 GTGACACCACTAGCAGCAAG 58.848 55.000 0.00 0.00 40.10 4.01
6783 10325 0.603707 TGACACCACTAGCAGCAAGC 60.604 55.000 0.00 0.00 46.19 4.01
6809 10351 0.391793 GTACTCTTGTGCTCCTGGCC 60.392 60.000 0.00 0.00 40.92 5.36
6857 10445 3.119602 TCGGTATGCTTCTGTGTACACTC 60.120 47.826 25.60 10.69 0.00 3.51
6926 10525 2.412089 CAGCCACGTAGAAAGTTACTGC 59.588 50.000 0.00 0.00 0.00 4.40
6932 10531 6.435428 CCACGTAGAAAGTTACTGCATTTTT 58.565 36.000 0.00 0.00 0.00 1.94
6934 10533 8.071368 CCACGTAGAAAGTTACTGCATTTTTAA 58.929 33.333 0.00 0.00 0.00 1.52
6935 10534 9.607285 CACGTAGAAAGTTACTGCATTTTTAAT 57.393 29.630 0.00 0.00 0.00 1.40
6936 10535 9.821662 ACGTAGAAAGTTACTGCATTTTTAATC 57.178 29.630 0.00 0.00 0.00 1.75
6939 10538 8.950403 AGAAAGTTACTGCATTTTTAATCGAC 57.050 30.769 0.00 0.00 0.00 4.20
6940 10539 7.744715 AGAAAGTTACTGCATTTTTAATCGACG 59.255 33.333 0.00 0.00 0.00 5.12
6941 10540 6.715344 AGTTACTGCATTTTTAATCGACGA 57.285 33.333 0.00 0.00 0.00 4.20
6942 10541 6.762108 AGTTACTGCATTTTTAATCGACGAG 58.238 36.000 3.01 0.00 0.00 4.18
6943 10542 6.367969 AGTTACTGCATTTTTAATCGACGAGT 59.632 34.615 3.01 2.70 0.00 4.18
6959 10558 3.952675 GTGTGTGTGCCAGCGGTG 61.953 66.667 7.86 7.86 0.00 4.94
6974 10573 0.234884 CGGTGTCTTTTCGTTCAGGC 59.765 55.000 0.00 0.00 0.00 4.85
6975 10574 1.305201 GGTGTCTTTTCGTTCAGGCA 58.695 50.000 0.00 0.00 0.00 4.75
7019 10618 0.107945 GAAGGGAATCGCAGAGCAGT 60.108 55.000 0.00 0.00 43.63 4.40
7027 10626 1.005748 CGCAGAGCAGTGGAAGACA 60.006 57.895 0.00 0.00 0.00 3.41
7091 10690 2.235855 GCGTGTTGCGTGGTTTATAAC 58.764 47.619 0.00 0.00 43.66 1.89
7105 10704 2.653953 TATAACGGGAAGCGCTGCCC 62.654 60.000 40.29 40.29 41.11 5.36
7290 11070 4.329462 TTTTACCATTTCCTGCGCTTTT 57.671 36.364 9.73 0.00 0.00 2.27
7291 11071 3.296322 TTACCATTTCCTGCGCTTTTG 57.704 42.857 9.73 0.00 0.00 2.44
7292 11072 0.319813 ACCATTTCCTGCGCTTTTGC 60.320 50.000 9.73 0.00 43.23 3.68
7340 11679 4.723248 GCTTTTGCACCTATACTTGTCAC 58.277 43.478 0.00 0.00 46.58 3.67
7341 11680 4.669197 GCTTTTGCACCTATACTTGTCACG 60.669 45.833 0.00 0.00 46.58 4.35
7342 11681 3.671008 TTGCACCTATACTTGTCACGT 57.329 42.857 0.00 0.00 0.00 4.49
7343 11682 4.787260 TTGCACCTATACTTGTCACGTA 57.213 40.909 0.00 0.00 0.00 3.57
7344 11683 4.994907 TGCACCTATACTTGTCACGTAT 57.005 40.909 7.13 7.13 0.00 3.06
7345 11684 5.333299 TGCACCTATACTTGTCACGTATT 57.667 39.130 7.24 0.00 0.00 1.89
7346 11685 6.453926 TGCACCTATACTTGTCACGTATTA 57.546 37.500 7.24 0.00 0.00 0.98
7347 11686 6.865411 TGCACCTATACTTGTCACGTATTAA 58.135 36.000 7.24 0.00 0.00 1.40
7348 11687 7.321908 TGCACCTATACTTGTCACGTATTAAA 58.678 34.615 7.24 0.00 0.00 1.52
7349 11688 7.818446 TGCACCTATACTTGTCACGTATTAAAA 59.182 33.333 7.24 0.00 0.00 1.52
7350 11689 8.658609 GCACCTATACTTGTCACGTATTAAAAA 58.341 33.333 7.24 0.00 0.00 1.94
7370 11709 4.307032 AAAATACTCCTGTCACATGCCT 57.693 40.909 0.00 0.00 0.00 4.75
7371 11710 4.307032 AAATACTCCTGTCACATGCCTT 57.693 40.909 0.00 0.00 0.00 4.35
7372 11711 4.307032 AATACTCCTGTCACATGCCTTT 57.693 40.909 0.00 0.00 0.00 3.11
7373 11712 2.664402 ACTCCTGTCACATGCCTTTT 57.336 45.000 0.00 0.00 0.00 2.27
7374 11713 2.949447 ACTCCTGTCACATGCCTTTTT 58.051 42.857 0.00 0.00 0.00 1.94
7375 11714 2.887152 ACTCCTGTCACATGCCTTTTTC 59.113 45.455 0.00 0.00 0.00 2.29
7376 11715 2.886523 CTCCTGTCACATGCCTTTTTCA 59.113 45.455 0.00 0.00 0.00 2.69
7377 11716 3.499338 TCCTGTCACATGCCTTTTTCAT 58.501 40.909 0.00 0.00 0.00 2.57
7378 11717 3.896888 TCCTGTCACATGCCTTTTTCATT 59.103 39.130 0.00 0.00 0.00 2.57
7379 11718 3.991773 CCTGTCACATGCCTTTTTCATTG 59.008 43.478 0.00 0.00 0.00 2.82
7380 11719 4.501915 CCTGTCACATGCCTTTTTCATTGT 60.502 41.667 0.00 0.00 0.00 2.71
7381 11720 5.278907 CCTGTCACATGCCTTTTTCATTGTA 60.279 40.000 0.00 0.00 0.00 2.41
7382 11721 6.343716 TGTCACATGCCTTTTTCATTGTAT 57.656 33.333 0.00 0.00 0.00 2.29
7383 11722 6.757237 TGTCACATGCCTTTTTCATTGTATT 58.243 32.000 0.00 0.00 0.00 1.89
7384 11723 6.867816 TGTCACATGCCTTTTTCATTGTATTC 59.132 34.615 0.00 0.00 0.00 1.75
7385 11724 6.033831 GTCACATGCCTTTTTCATTGTATTCG 59.966 38.462 0.00 0.00 0.00 3.34
7386 11725 5.863397 CACATGCCTTTTTCATTGTATTCGT 59.137 36.000 0.00 0.00 0.00 3.85
7387 11726 6.033831 CACATGCCTTTTTCATTGTATTCGTC 59.966 38.462 0.00 0.00 0.00 4.20
7388 11727 5.697473 TGCCTTTTTCATTGTATTCGTCA 57.303 34.783 0.00 0.00 0.00 4.35
7389 11728 6.078202 TGCCTTTTTCATTGTATTCGTCAA 57.922 33.333 0.00 0.00 0.00 3.18
7390 11729 6.686630 TGCCTTTTTCATTGTATTCGTCAAT 58.313 32.000 0.00 0.00 36.16 2.57
7391 11730 7.151308 TGCCTTTTTCATTGTATTCGTCAATT 58.849 30.769 0.00 0.00 33.92 2.32
7392 11731 8.300286 TGCCTTTTTCATTGTATTCGTCAATTA 58.700 29.630 0.00 0.00 33.92 1.40
7393 11732 9.301153 GCCTTTTTCATTGTATTCGTCAATTAT 57.699 29.630 0.00 0.00 33.92 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.029828 AGTCGTGGACACAGATGACTTC 60.030 50.000 3.12 0.00 33.49 3.01
40 41 4.274147 TCACTTCTAGAGGATGTGGAGTC 58.726 47.826 9.14 0.00 44.90 3.36
87 88 2.811317 CCGGTTCTGCTCTCGTGC 60.811 66.667 0.00 0.00 0.00 5.34
89 90 2.963371 GTCCGGTTCTGCTCTCGT 59.037 61.111 0.00 0.00 0.00 4.18
159 160 2.287668 CCATCGTCGGAGTTGTCTATCC 60.288 54.545 0.00 0.00 0.00 2.59
160 161 2.287668 CCCATCGTCGGAGTTGTCTATC 60.288 54.545 0.00 0.00 0.00 2.08
161 162 1.681793 CCCATCGTCGGAGTTGTCTAT 59.318 52.381 0.00 0.00 0.00 1.98
163 164 1.890894 CCCATCGTCGGAGTTGTCT 59.109 57.895 0.00 0.00 0.00 3.41
173 175 3.112205 ATCTGCCCAGCCCATCGTC 62.112 63.158 0.00 0.00 0.00 4.20
175 177 2.281345 GATCTGCCCAGCCCATCG 60.281 66.667 0.00 0.00 0.00 3.84
182 184 4.598894 CGAGCCGGATCTGCCCAG 62.599 72.222 19.08 0.00 0.00 4.45
186 188 2.206515 ATCGATCGAGCCGGATCTGC 62.207 60.000 23.84 5.71 40.52 4.26
187 189 0.242286 AATCGATCGAGCCGGATCTG 59.758 55.000 23.84 11.53 40.52 2.90
188 190 0.962489 AAATCGATCGAGCCGGATCT 59.038 50.000 23.84 0.00 40.52 2.75
189 191 1.457303 CAAAATCGATCGAGCCGGATC 59.543 52.381 23.84 10.41 39.53 3.36
190 192 1.502231 CAAAATCGATCGAGCCGGAT 58.498 50.000 23.84 0.00 0.00 4.18
203 205 1.996191 AGAGCTCGAAGACGCAAAATC 59.004 47.619 8.37 0.00 39.58 2.17
230 232 0.966179 CCAAACACCCCCTTAGTTGC 59.034 55.000 0.00 0.00 0.00 4.17
238 240 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
239 241 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
240 242 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
242 244 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
243 245 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
280 282 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
281 283 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
282 284 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
284 286 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
285 287 2.286365 CCTGTTTGGTTTGCTAGGGA 57.714 50.000 0.00 0.00 0.00 4.20
296 298 4.705023 CCAAAATAGTCCCTACCTGTTTGG 59.295 45.833 0.00 0.00 42.93 3.28
297 299 4.705023 CCCAAAATAGTCCCTACCTGTTTG 59.295 45.833 0.00 0.00 0.00 2.93
298 300 4.604490 TCCCAAAATAGTCCCTACCTGTTT 59.396 41.667 0.00 0.00 0.00 2.83
299 301 4.018688 GTCCCAAAATAGTCCCTACCTGTT 60.019 45.833 0.00 0.00 0.00 3.16
300 302 3.522343 GTCCCAAAATAGTCCCTACCTGT 59.478 47.826 0.00 0.00 0.00 4.00
301 303 3.780850 AGTCCCAAAATAGTCCCTACCTG 59.219 47.826 0.00 0.00 0.00 4.00
302 304 4.090027 AGTCCCAAAATAGTCCCTACCT 57.910 45.455 0.00 0.00 0.00 3.08
303 305 4.857130 AAGTCCCAAAATAGTCCCTACC 57.143 45.455 0.00 0.00 0.00 3.18
304 306 6.571731 GCAAAAAGTCCCAAAATAGTCCCTAC 60.572 42.308 0.00 0.00 0.00 3.18
305 307 5.479027 GCAAAAAGTCCCAAAATAGTCCCTA 59.521 40.000 0.00 0.00 0.00 3.53
308 310 5.468540 AGCAAAAAGTCCCAAAATAGTCC 57.531 39.130 0.00 0.00 0.00 3.85
309 311 8.880878 TTTTAGCAAAAAGTCCCAAAATAGTC 57.119 30.769 0.00 0.00 31.04 2.59
323 325 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
326 328 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
329 331 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
330 332 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
331 333 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
333 335 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
335 337 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
336 338 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
337 339 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
340 342 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
341 343 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
342 344 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
343 345 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
344 346 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
345 347 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
346 348 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
348 350 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
349 351 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
350 352 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
351 353 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
352 354 7.766283 AGGACTTTTTGAAAAAGACTCTCAAG 58.234 34.615 30.55 7.82 31.11 3.02
353 355 7.703058 AGGACTTTTTGAAAAAGACTCTCAA 57.297 32.000 30.55 0.00 0.00 3.02
355 357 7.041030 CCCTAGGACTTTTTGAAAAAGACTCTC 60.041 40.741 30.55 19.27 0.00 3.20
356 358 6.773200 CCCTAGGACTTTTTGAAAAAGACTCT 59.227 38.462 30.55 23.56 0.00 3.24
359 361 6.954487 TCCCTAGGACTTTTTGAAAAAGAC 57.046 37.500 30.55 24.86 0.00 3.01
392 394 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
393 395 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
394 396 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
396 398 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
397 399 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
400 402 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
401 403 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
402 404 4.903049 TCTTAGGTGGTGTTTGGTTCTCTA 59.097 41.667 0.00 0.00 0.00 2.43
403 405 3.714798 TCTTAGGTGGTGTTTGGTTCTCT 59.285 43.478 0.00 0.00 0.00 3.10
404 406 4.081322 TCTTAGGTGGTGTTTGGTTCTC 57.919 45.455 0.00 0.00 0.00 2.87
405 407 4.141251 ACATCTTAGGTGGTGTTTGGTTCT 60.141 41.667 0.00 0.00 0.00 3.01
407 409 4.142038 GACATCTTAGGTGGTGTTTGGTT 58.858 43.478 0.00 0.00 0.00 3.67
409 411 3.750371 TGACATCTTAGGTGGTGTTTGG 58.250 45.455 0.00 0.00 0.00 3.28
410 412 4.216257 CCTTGACATCTTAGGTGGTGTTTG 59.784 45.833 0.00 0.00 0.00 2.93
411 413 4.398319 CCTTGACATCTTAGGTGGTGTTT 58.602 43.478 0.00 0.00 0.00 2.83
413 415 2.305927 CCCTTGACATCTTAGGTGGTGT 59.694 50.000 0.00 0.00 0.00 4.16
414 416 2.941415 GCCCTTGACATCTTAGGTGGTG 60.941 54.545 0.00 0.00 0.00 4.17
415 417 1.282157 GCCCTTGACATCTTAGGTGGT 59.718 52.381 0.00 0.00 0.00 4.16
417 419 2.026822 AGTGCCCTTGACATCTTAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
419 421 2.636830 CAGTGCCCTTGACATCTTAGG 58.363 52.381 0.00 0.00 0.00 2.69
420 422 2.012673 GCAGTGCCCTTGACATCTTAG 58.987 52.381 2.85 0.00 0.00 2.18
424 1340 3.595819 GGCAGTGCCCTTGACATC 58.404 61.111 24.53 0.00 44.06 3.06
493 1409 9.546428 CATGTTACATGGAGAGAACATATAACA 57.454 33.333 16.85 10.50 46.17 2.41
498 1414 6.408092 GGGACATGTTACATGGAGAGAACATA 60.408 42.308 26.30 0.00 39.81 2.29
518 1434 5.541868 AACATATGTTTGGTTCAATGGGACA 59.458 36.000 15.47 0.00 37.72 4.02
563 1479 5.650266 TGCTCACAGTGAAAAGGAGTTAAAA 59.350 36.000 4.41 0.00 0.00 1.52
567 1483 3.281727 TGCTCACAGTGAAAAGGAGTT 57.718 42.857 4.41 0.00 0.00 3.01
580 1496 5.128205 AGAGCTAATTATGCAATGCTCACA 58.872 37.500 18.78 0.00 40.29 3.58
591 1507 9.955208 TTACATCATTTGCAAGAGCTAATTATG 57.045 29.630 13.31 13.31 45.05 1.90
619 1535 8.690840 GTGGCATTTTATTAATCGTCAAATAGC 58.309 33.333 0.00 0.00 0.00 2.97
628 1544 5.971202 AGCTTTCGTGGCATTTTATTAATCG 59.029 36.000 0.00 0.00 0.00 3.34
642 1558 0.462759 GATGGGAGGAGCTTTCGTGG 60.463 60.000 0.00 0.00 0.00 4.94
649 1565 2.023501 AGTCACTAAGATGGGAGGAGCT 60.024 50.000 0.00 0.00 0.00 4.09
653 1569 4.223923 AGTTTCAGTCACTAAGATGGGAGG 59.776 45.833 0.00 0.00 0.00 4.30
658 1574 9.869844 CTTTGTTAAGTTTCAGTCACTAAGATG 57.130 33.333 0.00 0.00 0.00 2.90
663 1579 7.434307 CGAGACTTTGTTAAGTTTCAGTCACTA 59.566 37.037 8.63 0.00 44.51 2.74
675 1592 6.420903 TGTCACTTGATCGAGACTTTGTTAAG 59.579 38.462 17.27 0.00 37.40 1.85
681 1598 4.855715 TCTGTCACTTGATCGAGACTTT 57.144 40.909 17.27 0.00 32.41 2.66
686 1603 3.642705 TGTGTTCTGTCACTTGATCGAG 58.357 45.455 8.54 8.54 38.90 4.04
689 1606 5.991328 TCTTTGTGTTCTGTCACTTGATC 57.009 39.130 0.00 0.00 38.90 2.92
690 1607 6.757897 TTTCTTTGTGTTCTGTCACTTGAT 57.242 33.333 0.00 0.00 38.90 2.57
695 1612 8.583765 GTGTAAATTTTCTTTGTGTTCTGTCAC 58.416 33.333 0.00 0.00 38.63 3.67
706 1623 7.535258 CGTGGAGATCTGTGTAAATTTTCTTTG 59.465 37.037 0.00 0.00 0.00 2.77
708 1625 6.710744 ACGTGGAGATCTGTGTAAATTTTCTT 59.289 34.615 0.00 0.00 0.00 2.52
710 1627 6.481954 ACGTGGAGATCTGTGTAAATTTTC 57.518 37.500 0.00 0.00 0.00 2.29
711 1628 6.485313 TCAACGTGGAGATCTGTGTAAATTTT 59.515 34.615 0.00 0.00 0.00 1.82
712 1629 5.995282 TCAACGTGGAGATCTGTGTAAATTT 59.005 36.000 0.00 0.00 0.00 1.82
713 1630 5.547465 TCAACGTGGAGATCTGTGTAAATT 58.453 37.500 0.00 0.00 0.00 1.82
714 1631 5.147330 TCAACGTGGAGATCTGTGTAAAT 57.853 39.130 0.00 0.00 0.00 1.40
715 1632 4.594123 TCAACGTGGAGATCTGTGTAAA 57.406 40.909 0.00 0.00 0.00 2.01
716 1633 4.462834 AGATCAACGTGGAGATCTGTGTAA 59.537 41.667 20.88 0.00 46.75 2.41
717 1634 4.017126 AGATCAACGTGGAGATCTGTGTA 58.983 43.478 20.88 0.00 46.75 2.90
718 1635 2.828520 AGATCAACGTGGAGATCTGTGT 59.171 45.455 20.88 4.43 46.75 3.72
719 1636 3.516981 AGATCAACGTGGAGATCTGTG 57.483 47.619 20.88 0.47 46.75 3.66
725 1642 9.570468 ACTATATTAGTTAGATCAACGTGGAGA 57.430 33.333 0.00 0.00 42.35 3.71
746 1663 8.454894 GCTCAATCTCAGTCGAATGATACTATA 58.545 37.037 16.83 0.39 0.00 1.31
756 1673 3.119495 TCGATTGCTCAATCTCAGTCGAA 60.119 43.478 17.41 0.00 44.41 3.71
757 1674 2.423538 TCGATTGCTCAATCTCAGTCGA 59.576 45.455 17.41 9.46 44.90 4.20
759 1676 3.796178 GTCTCGATTGCTCAATCTCAGTC 59.204 47.826 17.41 9.21 43.71 3.51
769 1686 2.609244 GCTATGGAGGTCTCGATTGCTC 60.609 54.545 16.86 0.00 40.88 4.26
1149 2090 1.077357 GAGGAGAGGTGAGGAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
1245 2186 1.829096 GTAGGAGAGGGAGGCGGTC 60.829 68.421 0.00 0.00 0.00 4.79
1550 2508 3.423154 CCTTCGTCTGCGCCCAAC 61.423 66.667 4.18 0.00 38.14 3.77
1658 2623 6.486320 TGTCTTTCAAGTAATGTCAATGCTGA 59.514 34.615 0.00 0.00 0.00 4.26
1747 2830 4.022329 AGGTTGTGTGGTTAAGCAATAAGC 60.022 41.667 9.30 13.27 46.19 3.09
1758 2841 4.806286 GCCATAAGTCTAGGTTGTGTGGTT 60.806 45.833 0.00 0.00 0.00 3.67
1774 2857 8.306761 ACCAAGAGTTAAAAGAATTGCCATAAG 58.693 33.333 0.00 0.00 0.00 1.73
1903 2986 7.483307 CAACCTTACATGGAAATGGAAGTATG 58.517 38.462 2.99 4.85 40.13 2.39
1904 2987 6.096846 GCAACCTTACATGGAAATGGAAGTAT 59.903 38.462 2.99 0.00 40.13 2.12
1905 2988 5.417580 GCAACCTTACATGGAAATGGAAGTA 59.582 40.000 2.99 0.00 40.13 2.24
1906 2989 4.220602 GCAACCTTACATGGAAATGGAAGT 59.779 41.667 2.99 0.00 40.13 3.01
1907 2990 4.220382 TGCAACCTTACATGGAAATGGAAG 59.780 41.667 2.99 4.03 41.15 3.46
1908 2991 4.155709 TGCAACCTTACATGGAAATGGAA 58.844 39.130 2.99 0.00 0.00 3.53
1909 2992 3.763360 CTGCAACCTTACATGGAAATGGA 59.237 43.478 2.99 0.00 0.00 3.41
1910 2993 3.763360 TCTGCAACCTTACATGGAAATGG 59.237 43.478 0.00 0.00 0.00 3.16
1982 3073 2.178580 ACCCCACATTAATGTTGGCAG 58.821 47.619 26.21 18.39 41.04 4.85
2048 3222 3.773860 AGTATTCTGTGCTCTGACTCG 57.226 47.619 0.00 0.00 0.00 4.18
2082 3513 4.341806 TGTTTTCATCAGAACTGGCATTGT 59.658 37.500 1.93 0.00 32.39 2.71
2096 3527 8.538409 AAACATGGCTAGAAAATGTTTTCATC 57.462 30.769 17.60 7.89 46.91 2.92
2107 3538 9.638239 GAAATATCACAAAAACATGGCTAGAAA 57.362 29.630 0.00 0.00 0.00 2.52
2137 3568 4.227300 TGCAGGGAAACACTATGGTTCTAT 59.773 41.667 6.56 0.00 43.35 1.98
2201 3632 8.632906 TGGACCGAAAAGTTGGTAAATATAAA 57.367 30.769 0.00 0.00 38.99 1.40
2208 3639 5.656213 TTTTTGGACCGAAAAGTTGGTAA 57.344 34.783 14.65 0.00 38.99 2.85
2230 3661 5.343307 AGGCAGAAGTTGATGTTGTTTTT 57.657 34.783 0.00 0.00 0.00 1.94
2235 3667 5.830912 TGTAAAAGGCAGAAGTTGATGTTG 58.169 37.500 0.00 0.00 0.00 3.33
2477 3924 2.872842 GCAGGAAAAAGCATTGCACCAT 60.873 45.455 11.91 0.00 34.99 3.55
2747 4265 3.607209 GTCAGCTTAGGAAACTCGTTACG 59.393 47.826 0.00 0.00 43.67 3.18
2797 4315 6.657966 ACACCAAAGGTTAGAAAGTAATAGGC 59.342 38.462 0.00 0.00 31.02 3.93
2798 4316 8.631480 AACACCAAAGGTTAGAAAGTAATAGG 57.369 34.615 0.00 0.00 31.02 2.57
2801 4319 8.630037 CAGAAACACCAAAGGTTAGAAAGTAAT 58.370 33.333 0.00 0.00 31.02 1.89
2930 4448 9.886132 ACAAGTAGAAGAAGTAACAAGAGAAAA 57.114 29.630 0.00 0.00 0.00 2.29
3182 4702 5.363868 TGATCATTCCAGGAGTAGTACAAGG 59.636 44.000 2.52 0.00 0.00 3.61
3330 4858 6.061441 ACTCCACTTCAATGTCAATGTACAA 58.939 36.000 0.00 0.00 32.02 2.41
3337 4865 6.713762 ATTGAAACTCCACTTCAATGTCAA 57.286 33.333 9.39 0.00 46.65 3.18
3390 5036 2.323939 TTAAACCTGCAAACGCGATG 57.676 45.000 15.93 13.05 0.00 3.84
3394 5040 4.565166 AGAAAACTTTAAACCTGCAAACGC 59.435 37.500 0.00 0.00 0.00 4.84
3401 5048 7.576861 TGGGAGTAAGAAAACTTTAAACCTG 57.423 36.000 0.00 0.00 0.00 4.00
3457 5111 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
3459 5113 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
3460 5114 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
3461 5115 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
3463 5117 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
3464 5118 8.385111 TCTTAATATGCGGAGTAAAAAGAAACG 58.615 33.333 0.00 0.00 0.00 3.60
3494 5148 8.920509 AAACTTTGCGTAGTTTGACTTTAAAT 57.079 26.923 13.34 0.00 44.42 1.40
3505 5159 4.705337 TTTGGTCAAACTTTGCGTAGTT 57.295 36.364 0.00 0.00 39.97 2.24
3506 5160 4.705337 TTTTGGTCAAACTTTGCGTAGT 57.295 36.364 0.00 0.00 0.00 2.73
3508 5162 9.915629 AATATAATTTTGGTCAAACTTTGCGTA 57.084 25.926 4.76 0.00 0.00 4.42
3575 5229 9.807649 ATTAGATGCACCATGAAATTAACTTTC 57.192 29.630 0.00 4.41 43.05 2.62
3576 5230 9.590451 CATTAGATGCACCATGAAATTAACTTT 57.410 29.630 0.00 0.00 0.00 2.66
3577 5231 8.970020 TCATTAGATGCACCATGAAATTAACTT 58.030 29.630 0.00 0.00 0.00 2.66
3578 5232 8.523915 TCATTAGATGCACCATGAAATTAACT 57.476 30.769 0.00 0.00 0.00 2.24
3584 5238 8.570488 GTCAATATCATTAGATGCACCATGAAA 58.430 33.333 0.00 0.00 35.67 2.69
3586 5240 7.455891 AGTCAATATCATTAGATGCACCATGA 58.544 34.615 0.00 0.00 35.67 3.07
3606 5260 8.611757 CCATCAACATTCATAATACGAAGTCAA 58.388 33.333 0.00 0.00 43.93 3.18
3608 5262 8.142994 ACCATCAACATTCATAATACGAAGTC 57.857 34.615 0.00 0.00 43.93 3.01
3610 5264 9.787532 AAAACCATCAACATTCATAATACGAAG 57.212 29.630 0.00 0.00 0.00 3.79
3612 5266 9.781834 GAAAAACCATCAACATTCATAATACGA 57.218 29.630 0.00 0.00 0.00 3.43
3613 5267 9.787532 AGAAAAACCATCAACATTCATAATACG 57.212 29.630 0.00 0.00 0.00 3.06
3615 5269 9.585099 GCAGAAAAACCATCAACATTCATAATA 57.415 29.630 0.00 0.00 0.00 0.98
3616 5270 8.095792 TGCAGAAAAACCATCAACATTCATAAT 58.904 29.630 0.00 0.00 0.00 1.28
3618 5272 6.990798 TGCAGAAAAACCATCAACATTCATA 58.009 32.000 0.00 0.00 0.00 2.15
3620 5274 5.163426 ACTGCAGAAAAACCATCAACATTCA 60.163 36.000 23.35 0.00 0.00 2.57
3623 5277 4.942761 ACTGCAGAAAAACCATCAACAT 57.057 36.364 23.35 0.00 0.00 2.71
3624 5278 5.843673 TTACTGCAGAAAAACCATCAACA 57.156 34.783 23.35 0.00 0.00 3.33
3625 5279 7.713764 AATTTACTGCAGAAAAACCATCAAC 57.286 32.000 23.35 0.00 0.00 3.18
3627 5281 7.495901 TCAAATTTACTGCAGAAAAACCATCA 58.504 30.769 23.35 0.00 0.00 3.07
3628 5282 7.945033 TCAAATTTACTGCAGAAAAACCATC 57.055 32.000 23.35 0.00 0.00 3.51
3629 5283 8.203485 TCTTCAAATTTACTGCAGAAAAACCAT 58.797 29.630 23.35 7.76 0.00 3.55
3868 5533 9.403583 GTCCTAAAATCAAACAACCCATATAGA 57.596 33.333 0.00 0.00 0.00 1.98
3919 5890 4.913335 ATAGAGTCCGCGATGAGTTTAA 57.087 40.909 8.23 0.00 0.00 1.52
4019 6354 2.161855 GGATTGCAATGTCACACCTCA 58.838 47.619 18.59 0.00 0.00 3.86
4020 6355 2.440409 AGGATTGCAATGTCACACCTC 58.560 47.619 18.59 0.00 0.00 3.85
4044 6379 5.107220 CCAGAACACACACGGATAGTAAAAC 60.107 44.000 0.00 0.00 0.00 2.43
4046 6382 4.281435 TCCAGAACACACACGGATAGTAAA 59.719 41.667 0.00 0.00 0.00 2.01
4049 6385 2.244695 TCCAGAACACACACGGATAGT 58.755 47.619 0.00 0.00 0.00 2.12
4082 6427 0.459759 GTAGCGGTAGTGGCCACTTC 60.460 60.000 41.69 34.95 42.54 3.01
4117 6462 1.476488 GTATTTGCGGGTTGCTGGAAT 59.524 47.619 0.00 0.00 46.63 3.01
4120 6465 1.670811 CTAGTATTTGCGGGTTGCTGG 59.329 52.381 0.00 0.00 46.63 4.85
4146 6492 9.107367 GATGACAGAAAATACGAAAAAGTTCAG 57.893 33.333 0.00 0.00 32.89 3.02
4157 6504 3.935203 AGCCACTGATGACAGAAAATACG 59.065 43.478 0.00 0.00 46.03 3.06
4195 6544 8.352942 GGACTTCGCCATAAGATAAATTCAATT 58.647 33.333 0.00 0.00 0.00 2.32
4196 6545 7.502226 TGGACTTCGCCATAAGATAAATTCAAT 59.498 33.333 0.00 0.00 31.66 2.57
4214 6570 6.683974 AGATGGATGTAATTTTGGACTTCG 57.316 37.500 0.00 0.00 0.00 3.79
4318 6691 4.702612 AGATCAGCAGTATACCTACGATGG 59.297 45.833 0.00 0.00 32.82 3.51
4323 6696 5.047731 TGCATCAGATCAGCAGTATACCTAC 60.048 44.000 0.00 0.00 33.75 3.18
4344 6721 4.943705 GGATGACCTTCAGAATAAACTGCA 59.056 41.667 0.00 0.00 37.75 4.41
4362 6739 7.587037 AATTTTGAGACAGAAACAAGGATGA 57.413 32.000 0.00 0.00 0.00 2.92
4431 6808 5.768317 CTTCAAAACTCCCATTTTAAGCGA 58.232 37.500 0.00 0.00 30.57 4.93
4435 6812 6.780522 ACTAGGCTTCAAAACTCCCATTTTAA 59.219 34.615 0.00 0.00 30.57 1.52
4438 6815 4.740902 ACTAGGCTTCAAAACTCCCATTT 58.259 39.130 0.00 0.00 0.00 2.32
4451 6828 6.599638 ACACCTGATTTGATTTACTAGGCTTC 59.400 38.462 0.00 0.00 0.00 3.86
4489 6866 8.948631 TCAAATATCTCTCAGCGAGTAAAAAT 57.051 30.769 5.66 0.00 40.75 1.82
4495 6878 7.436673 GTGTATTTCAAATATCTCTCAGCGAGT 59.563 37.037 0.00 0.00 40.75 4.18
4550 6937 5.824624 TCCAGCAATTCCTGAATCTACATTC 59.175 40.000 0.00 0.00 39.24 2.67
4986 8473 5.641209 ACAATGCAACTTTTACAGCACAAAA 59.359 32.000 0.00 0.00 40.14 2.44
5050 8538 8.192774 TCATACCTGAAATTGAAGATTTGCATC 58.807 33.333 0.00 0.00 0.00 3.91
5161 8649 3.696051 TCATCTTTGTTGCCAGCTTATCC 59.304 43.478 0.00 0.00 0.00 2.59
5209 8697 6.758886 AGAGATTTGCTGTAGCTTACATGTAC 59.241 38.462 4.68 0.00 42.66 2.90
5226 8714 8.021973 CCAAAGAGATTGAACAGAAGAGATTTG 58.978 37.037 0.00 0.00 41.85 2.32
5227 8715 7.941238 TCCAAAGAGATTGAACAGAAGAGATTT 59.059 33.333 0.00 0.00 41.85 2.17
5231 8719 6.229733 ACTCCAAAGAGATTGAACAGAAGAG 58.770 40.000 0.00 0.00 43.39 2.85
5277 8765 5.371526 AGCGACAATTACTTGATCATCCAT 58.628 37.500 0.00 0.00 36.20 3.41
5279 8767 5.525378 AGAAGCGACAATTACTTGATCATCC 59.475 40.000 0.00 0.00 36.20 3.51
5296 8788 0.252197 GGGCCCTTTAGAAGAAGCGA 59.748 55.000 17.04 0.00 0.00 4.93
5298 8790 2.290960 TGAAGGGCCCTTTAGAAGAAGC 60.291 50.000 37.44 21.20 36.26 3.86
5401 8896 4.747108 CGTGGCCATTCTTTCTGTCTATAG 59.253 45.833 9.72 0.00 0.00 1.31
5459 8954 5.947443 AGATAACTGCAATTTCAGAACTGC 58.053 37.500 12.25 8.84 37.51 4.40
5537 9041 1.202639 TCCATTCTGCGTGCGGATAAT 60.203 47.619 3.88 0.00 0.00 1.28
5662 9166 3.689897 GATGCAACGTATATCTGCGTC 57.310 47.619 13.83 13.83 43.16 5.19
5665 9169 2.738846 CCCTGATGCAACGTATATCTGC 59.261 50.000 2.20 2.20 36.60 4.26
5757 9261 1.571460 CACTTCGGTTGAGCTGTGC 59.429 57.895 0.00 0.00 0.00 4.57
5808 9312 8.576442 TCCAGAATAAAAAGAACTTGATGGAAC 58.424 33.333 0.00 0.00 0.00 3.62
5923 9427 6.061441 TCAACTATTTTGCAAGTCTGGAAGA 58.939 36.000 0.00 0.00 43.69 2.87
5936 9440 3.254657 TGTTTCGCCCCTCAACTATTTTG 59.745 43.478 0.00 0.00 0.00 2.44
6026 9536 1.369091 CTTGGTCACCTGCATACCGC 61.369 60.000 0.00 0.00 42.89 5.68
6487 10015 5.952033 GCACTTACTGCTAGTAGTAGTGTT 58.048 41.667 28.87 10.63 41.31 3.32
6676 10214 4.834357 ACAATTGGCATTTCCTTTTTGC 57.166 36.364 10.83 0.00 35.26 3.68
6682 10220 7.270047 CAATATCTGAACAATTGGCATTTCCT 58.730 34.615 10.83 0.00 35.26 3.36
6691 10229 8.920509 TCAAGAATGCAATATCTGAACAATTG 57.079 30.769 3.24 3.24 34.45 2.32
6692 10230 7.705325 GCTCAAGAATGCAATATCTGAACAATT 59.295 33.333 0.00 0.00 0.00 2.32
6706 10244 1.280133 ACTGGCTAGCTCAAGAATGCA 59.720 47.619 15.72 0.00 0.00 3.96
6743 10285 4.523943 TCACATGAACAGAATCAAAAGGGG 59.476 41.667 0.00 0.00 32.06 4.79
6766 10308 1.302832 GGCTTGCTGCTAGTGGTGT 60.303 57.895 12.43 0.00 42.39 4.16
6776 10318 3.601443 AGAGTACTTACTGGCTTGCTG 57.399 47.619 0.00 0.00 36.50 4.41
6777 10319 3.325135 ACAAGAGTACTTACTGGCTTGCT 59.675 43.478 15.84 5.05 39.68 3.91
6779 10321 3.433615 GCACAAGAGTACTTACTGGCTTG 59.566 47.826 14.81 14.81 40.82 4.01
6781 10323 2.900546 AGCACAAGAGTACTTACTGGCT 59.099 45.455 0.00 1.56 36.50 4.75
6782 10324 3.254892 GAGCACAAGAGTACTTACTGGC 58.745 50.000 0.00 0.00 36.50 4.85
6783 10325 3.511934 AGGAGCACAAGAGTACTTACTGG 59.488 47.826 0.00 0.00 36.50 4.00
6784 10326 4.489810 CAGGAGCACAAGAGTACTTACTG 58.510 47.826 0.00 0.00 36.50 2.74
6785 10327 3.511934 CCAGGAGCACAAGAGTACTTACT 59.488 47.826 0.00 0.00 39.71 2.24
6857 10445 0.236711 CAAGAGACCGTGCTTTGCAG 59.763 55.000 0.00 0.00 40.08 4.41
6926 10525 5.560005 CACACACACTCGTCGATTAAAAATG 59.440 40.000 0.00 0.00 0.00 2.32
6932 10531 1.667756 GGCACACACACTCGTCGATTA 60.668 52.381 0.00 0.00 0.00 1.75
6934 10533 1.372997 GGCACACACACTCGTCGAT 60.373 57.895 0.00 0.00 0.00 3.59
6935 10534 2.027024 GGCACACACACTCGTCGA 59.973 61.111 0.00 0.00 0.00 4.20
6936 10535 2.279186 TGGCACACACACTCGTCG 60.279 61.111 0.00 0.00 0.00 5.12
6938 10537 2.588877 GCTGGCACACACACTCGT 60.589 61.111 0.00 0.00 0.00 4.18
6939 10538 3.705638 CGCTGGCACACACACTCG 61.706 66.667 0.00 0.00 0.00 4.18
6940 10539 3.349006 CCGCTGGCACACACACTC 61.349 66.667 0.00 0.00 0.00 3.51
6941 10540 4.175337 ACCGCTGGCACACACACT 62.175 61.111 0.00 0.00 0.00 3.55
6942 10541 3.952675 CACCGCTGGCACACACAC 61.953 66.667 0.00 0.00 0.00 3.82
6943 10542 4.481617 ACACCGCTGGCACACACA 62.482 61.111 0.00 0.00 0.00 3.72
6959 10558 0.234884 CCGTGCCTGAACGAAAAGAC 59.765 55.000 0.00 0.00 46.49 3.01
6974 10573 2.435586 CTGAAGCTGAGGGCCGTG 60.436 66.667 0.65 0.00 43.05 4.94
6975 10574 2.925170 ACTGAAGCTGAGGGCCGT 60.925 61.111 0.00 0.00 43.05 5.68
7019 10618 2.031012 CAGGCTGCGTGTCTTCCA 59.969 61.111 13.81 0.00 0.00 3.53
7268 11048 4.329462 AAAGCGCAGGAAATGGTAAAAA 57.671 36.364 11.47 0.00 0.00 1.94
7273 11053 0.319813 GCAAAAGCGCAGGAAATGGT 60.320 50.000 11.47 0.00 0.00 3.55
7274 11054 0.319727 TGCAAAAGCGCAGGAAATGG 60.320 50.000 11.47 0.00 36.86 3.16
7275 11055 0.785979 GTGCAAAAGCGCAGGAAATG 59.214 50.000 11.47 0.34 44.05 2.32
7280 11060 2.438951 ATTGGGTGCAAAAGCGCAGG 62.439 55.000 11.47 0.00 44.05 4.85
7348 11687 4.666512 AGGCATGTGACAGGAGTATTTTT 58.333 39.130 0.00 0.00 0.00 1.94
7349 11688 4.307032 AGGCATGTGACAGGAGTATTTT 57.693 40.909 0.00 0.00 0.00 1.82
7350 11689 4.307032 AAGGCATGTGACAGGAGTATTT 57.693 40.909 0.00 0.00 0.00 1.40
7351 11690 4.307032 AAAGGCATGTGACAGGAGTATT 57.693 40.909 0.00 0.00 0.00 1.89
7352 11691 4.307032 AAAAGGCATGTGACAGGAGTAT 57.693 40.909 0.00 0.00 0.00 2.12
7353 11692 3.788227 AAAAGGCATGTGACAGGAGTA 57.212 42.857 0.00 0.00 0.00 2.59
7354 11693 2.664402 AAAAGGCATGTGACAGGAGT 57.336 45.000 0.00 0.00 0.00 3.85
7355 11694 2.886523 TGAAAAAGGCATGTGACAGGAG 59.113 45.455 0.00 0.00 0.00 3.69
7356 11695 2.942804 TGAAAAAGGCATGTGACAGGA 58.057 42.857 0.00 0.00 0.00 3.86
7357 11696 3.947910 ATGAAAAAGGCATGTGACAGG 57.052 42.857 0.00 0.00 0.00 4.00
7358 11697 4.624015 ACAATGAAAAAGGCATGTGACAG 58.376 39.130 0.00 0.00 0.00 3.51
7359 11698 4.669206 ACAATGAAAAAGGCATGTGACA 57.331 36.364 0.00 0.00 0.00 3.58
7360 11699 6.033831 CGAATACAATGAAAAAGGCATGTGAC 59.966 38.462 0.00 0.00 0.00 3.67
7361 11700 6.092092 CGAATACAATGAAAAAGGCATGTGA 58.908 36.000 0.00 0.00 0.00 3.58
7362 11701 5.863397 ACGAATACAATGAAAAAGGCATGTG 59.137 36.000 0.00 0.00 0.00 3.21
7363 11702 6.024552 ACGAATACAATGAAAAAGGCATGT 57.975 33.333 0.00 0.00 0.00 3.21
7364 11703 6.092092 TGACGAATACAATGAAAAAGGCATG 58.908 36.000 0.00 0.00 0.00 4.06
7365 11704 6.266168 TGACGAATACAATGAAAAAGGCAT 57.734 33.333 0.00 0.00 0.00 4.40
7366 11705 5.697473 TGACGAATACAATGAAAAAGGCA 57.303 34.783 0.00 0.00 0.00 4.75
7367 11706 7.581011 AATTGACGAATACAATGAAAAAGGC 57.419 32.000 0.00 0.00 37.89 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.