Multiple sequence alignment - TraesCS6D01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G122000 chr6D 100.000 2933 0 0 1 2933 86659126 86662058 0.000000e+00 5417
1 TraesCS6D01G122000 chr6D 97.337 413 9 2 2523 2933 379093457 379093045 0.000000e+00 701
2 TraesCS6D01G122000 chr6B 96.698 2544 64 10 1 2526 164358378 164360919 0.000000e+00 4215
3 TraesCS6D01G122000 chr6A 95.991 2544 81 8 1 2525 104357299 104359840 0.000000e+00 4113
4 TraesCS6D01G122000 chr6A 95.663 2421 76 8 1 2395 104446289 104443872 0.000000e+00 3862
5 TraesCS6D01G122000 chr6A 90.728 151 10 1 2380 2526 104443858 104443708 6.410000e-47 198
6 TraesCS6D01G122000 chr7D 97.567 411 8 2 2525 2933 114467274 114467684 0.000000e+00 702
7 TraesCS6D01G122000 chr7D 95.943 419 13 3 2516 2933 151540065 151540480 0.000000e+00 676
8 TraesCS6D01G122000 chr2D 96.852 413 11 2 2523 2933 70390879 70391291 0.000000e+00 689
9 TraesCS6D01G122000 chr5B 86.495 622 81 2 737 1355 684126740 684126119 0.000000e+00 680
10 TraesCS6D01G122000 chr5B 85.784 612 84 3 1349 1959 684120915 684120306 0.000000e+00 645
11 TraesCS6D01G122000 chr5B 75.782 735 163 15 1208 1936 560442162 560441437 1.000000e-94 357
12 TraesCS6D01G122000 chr3D 96.163 417 13 2 2520 2933 65599324 65599740 0.000000e+00 678
13 TraesCS6D01G122000 chr3D 96.368 413 12 3 2522 2933 460502836 460502426 0.000000e+00 676
14 TraesCS6D01G122000 chr4D 95.913 416 15 2 2519 2933 483164810 483165224 0.000000e+00 673
15 TraesCS6D01G122000 chr4D 95.913 416 14 2 2519 2933 483157014 483157427 0.000000e+00 671
16 TraesCS6D01G122000 chr4D 75.000 1036 242 17 905 1933 15913236 15912211 2.060000e-126 462
17 TraesCS6D01G122000 chr1D 95.704 419 17 1 2516 2933 367142494 367142076 0.000000e+00 673
18 TraesCS6D01G122000 chr4A 74.928 1037 218 23 902 1933 584679679 584680678 1.250000e-118 436
19 TraesCS6D01G122000 chr4A 74.952 1034 217 23 905 1933 584735245 584734249 1.250000e-118 436
20 TraesCS6D01G122000 chr5D 75.472 742 167 15 1201 1936 458095519 458094787 6.020000e-92 348
21 TraesCS6D01G122000 chr4B 75.586 725 164 13 1214 1933 27519688 27518972 2.160000e-91 346
22 TraesCS6D01G122000 chr4B 77.821 257 51 6 905 1158 27520220 27519967 1.410000e-33 154
23 TraesCS6D01G122000 chr5A 75.205 730 168 12 1212 1936 576085595 576084874 1.680000e-87 333
24 TraesCS6D01G122000 chr5A 75.205 730 168 12 1212 1936 576271836 576272557 1.680000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G122000 chr6D 86659126 86662058 2932 False 5417 5417 100.0000 1 2933 1 chr6D.!!$F1 2932
1 TraesCS6D01G122000 chr6B 164358378 164360919 2541 False 4215 4215 96.6980 1 2526 1 chr6B.!!$F1 2525
2 TraesCS6D01G122000 chr6A 104357299 104359840 2541 False 4113 4113 95.9910 1 2525 1 chr6A.!!$F1 2524
3 TraesCS6D01G122000 chr6A 104443708 104446289 2581 True 2030 3862 93.1955 1 2526 2 chr6A.!!$R1 2525
4 TraesCS6D01G122000 chr5B 684126119 684126740 621 True 680 680 86.4950 737 1355 1 chr5B.!!$R3 618
5 TraesCS6D01G122000 chr5B 684120306 684120915 609 True 645 645 85.7840 1349 1959 1 chr5B.!!$R2 610
6 TraesCS6D01G122000 chr5B 560441437 560442162 725 True 357 357 75.7820 1208 1936 1 chr5B.!!$R1 728
7 TraesCS6D01G122000 chr4D 15912211 15913236 1025 True 462 462 75.0000 905 1933 1 chr4D.!!$R1 1028
8 TraesCS6D01G122000 chr4A 584679679 584680678 999 False 436 436 74.9280 902 1933 1 chr4A.!!$F1 1031
9 TraesCS6D01G122000 chr4A 584734249 584735245 996 True 436 436 74.9520 905 1933 1 chr4A.!!$R1 1028
10 TraesCS6D01G122000 chr5D 458094787 458095519 732 True 348 348 75.4720 1201 1936 1 chr5D.!!$R1 735
11 TraesCS6D01G122000 chr4B 27518972 27520220 1248 True 250 346 76.7035 905 1933 2 chr4B.!!$R1 1028
12 TraesCS6D01G122000 chr5A 576084874 576085595 721 True 333 333 75.2050 1212 1936 1 chr5A.!!$R1 724
13 TraesCS6D01G122000 chr5A 576271836 576272557 721 False 333 333 75.2050 1212 1936 1 chr5A.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 457 0.107508 ACATCATCACCCGCCTGAAG 60.108 55.0 0.00 0.00 0.0 3.02 F
1041 1045 0.462759 GCCAAGTCCTCATTAGCGCT 60.463 55.0 17.26 17.26 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1963 0.724785 CGAACGCCTTTTTCGCCTTC 60.725 55.0 0.0 0.0 39.43 3.46 R
2870 3177 0.032403 GCCATCTGCTTGCAAACACA 59.968 50.0 0.0 0.0 36.87 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 220 2.765922 GCGCGAGTTCGACGACTTC 61.766 63.158 12.10 0.00 43.02 3.01
456 457 0.107508 ACATCATCACCCGCCTGAAG 60.108 55.000 0.00 0.00 0.00 3.02
548 549 1.302033 ACAACCTCGGCAAGCTCAG 60.302 57.895 0.00 0.00 0.00 3.35
633 634 4.564406 CCTCACCTGCTAAAGATCAACAGT 60.564 45.833 0.00 0.00 0.00 3.55
636 637 4.999950 CACCTGCTAAAGATCAACAGTCTT 59.000 41.667 0.00 0.00 37.52 3.01
654 655 5.119279 CAGTCTTCCAAACACATTCGTCTAG 59.881 44.000 0.00 0.00 0.00 2.43
672 673 2.032681 GCCACCAGGACGCTTCTT 59.967 61.111 0.00 0.00 36.89 2.52
819 823 2.119611 TCGGAGAGGGCTGTCCAA 59.880 61.111 0.00 0.00 42.66 3.53
1035 1039 1.675641 GGCACGCCAAGTCCTCATT 60.676 57.895 2.36 0.00 35.81 2.57
1041 1045 0.462759 GCCAAGTCCTCATTAGCGCT 60.463 55.000 17.26 17.26 0.00 5.92
1158 1399 2.656002 CCGGTAGACCTGATCAAGAGA 58.344 52.381 0.00 0.00 0.00 3.10
1431 1672 1.508545 CGAGCTCGTCAGGTCATGT 59.491 57.895 27.79 0.00 46.03 3.21
1722 1963 2.163010 GCCAAAGTGGACATCAGATGTG 59.837 50.000 21.26 4.93 45.03 3.21
1848 2089 3.196254 CAGCAAAATTCCCCTACATGCTT 59.804 43.478 0.00 0.00 40.40 3.91
2069 2313 6.922957 TGTGTTTATTTTCCTGTTGATGAAGC 59.077 34.615 0.00 0.00 0.00 3.86
2184 2428 1.464608 GCAAGCGAGTGTCTATTTGCA 59.535 47.619 2.47 0.00 40.30 4.08
2245 2501 5.351189 TCTTCATAACGACACATGTTGATGG 59.649 40.000 6.25 0.00 33.39 3.51
2280 2536 2.548480 GACCACTTTTTCCTCCGAAGTG 59.452 50.000 8.15 8.15 46.04 3.16
2361 2634 7.432350 TGGCAACCATAATTTTTGTTCATTC 57.568 32.000 0.00 0.00 0.00 2.67
2512 2819 2.723124 ACGGTTGTGATGATTTTGGC 57.277 45.000 0.00 0.00 0.00 4.52
2528 2835 9.868277 ATGATTTTGGCTCAAATTAATTTACGA 57.132 25.926 12.98 6.90 33.19 3.43
2529 2836 9.698309 TGATTTTGGCTCAAATTAATTTACGAA 57.302 25.926 12.98 7.01 33.19 3.85
2533 2840 9.535878 TTTGGCTCAAATTAATTTACGAAAAGT 57.464 25.926 12.98 0.00 0.00 2.66
2534 2841 8.514136 TGGCTCAAATTAATTTACGAAAAGTG 57.486 30.769 12.98 0.00 0.00 3.16
2535 2842 8.138712 TGGCTCAAATTAATTTACGAAAAGTGT 58.861 29.630 12.98 0.00 0.00 3.55
2536 2843 9.615295 GGCTCAAATTAATTTACGAAAAGTGTA 57.385 29.630 12.98 0.00 0.00 2.90
2540 2847 9.702949 CAAATTAATTTACGAAAAGTGTAACGC 57.297 29.630 12.98 0.00 45.86 4.84
2541 2848 8.438732 AATTAATTTACGAAAAGTGTAACGCC 57.561 30.769 0.00 0.00 45.86 5.68
2542 2849 3.876242 TTTACGAAAAGTGTAACGCCC 57.124 42.857 0.00 0.00 45.86 6.13
2543 2850 2.522836 TACGAAAAGTGTAACGCCCA 57.477 45.000 0.00 0.00 45.86 5.36
2544 2851 0.939419 ACGAAAAGTGTAACGCCCAC 59.061 50.000 0.00 0.00 45.86 4.61
2545 2852 0.938713 CGAAAAGTGTAACGCCCACA 59.061 50.000 3.05 0.00 45.86 4.17
2546 2853 1.333435 CGAAAAGTGTAACGCCCACAC 60.333 52.381 6.66 6.66 45.86 3.82
2559 2866 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
2560 2867 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
2570 2877 3.574780 GCGTTAGCCAACTCACCC 58.425 61.111 0.00 0.00 37.42 4.61
2571 2878 1.302192 GCGTTAGCCAACTCACCCA 60.302 57.895 0.00 0.00 37.42 4.51
2572 2879 1.574702 GCGTTAGCCAACTCACCCAC 61.575 60.000 0.00 0.00 37.42 4.61
2573 2880 0.250124 CGTTAGCCAACTCACCCACA 60.250 55.000 0.00 0.00 32.09 4.17
2574 2881 1.235724 GTTAGCCAACTCACCCACAC 58.764 55.000 0.00 0.00 0.00 3.82
2575 2882 0.250124 TTAGCCAACTCACCCACACG 60.250 55.000 0.00 0.00 0.00 4.49
2576 2883 2.725203 TAGCCAACTCACCCACACGC 62.725 60.000 0.00 0.00 0.00 5.34
2577 2884 2.978010 CCAACTCACCCACACGCC 60.978 66.667 0.00 0.00 0.00 5.68
2578 2885 2.111043 CAACTCACCCACACGCCT 59.889 61.111 0.00 0.00 0.00 5.52
2579 2886 1.961277 CAACTCACCCACACGCCTC 60.961 63.158 0.00 0.00 0.00 4.70
2580 2887 3.178540 AACTCACCCACACGCCTCC 62.179 63.158 0.00 0.00 0.00 4.30
2581 2888 3.625897 CTCACCCACACGCCTCCA 61.626 66.667 0.00 0.00 0.00 3.86
2582 2889 2.927856 TCACCCACACGCCTCCAT 60.928 61.111 0.00 0.00 0.00 3.41
2583 2890 2.436646 CACCCACACGCCTCCATC 60.437 66.667 0.00 0.00 0.00 3.51
2584 2891 2.927856 ACCCACACGCCTCCATCA 60.928 61.111 0.00 0.00 0.00 3.07
2585 2892 2.436646 CCCACACGCCTCCATCAC 60.437 66.667 0.00 0.00 0.00 3.06
2586 2893 2.436646 CCACACGCCTCCATCACC 60.437 66.667 0.00 0.00 0.00 4.02
2587 2894 2.815211 CACACGCCTCCATCACCG 60.815 66.667 0.00 0.00 0.00 4.94
2588 2895 3.311110 ACACGCCTCCATCACCGT 61.311 61.111 0.00 0.00 0.00 4.83
2589 2896 2.509336 CACGCCTCCATCACCGTC 60.509 66.667 0.00 0.00 0.00 4.79
2590 2897 3.771160 ACGCCTCCATCACCGTCC 61.771 66.667 0.00 0.00 0.00 4.79
2591 2898 3.770040 CGCCTCCATCACCGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
2592 2899 2.187946 GCCTCCATCACCGTCCAG 59.812 66.667 0.00 0.00 0.00 3.86
2593 2900 2.660064 GCCTCCATCACCGTCCAGT 61.660 63.158 0.00 0.00 0.00 4.00
2594 2901 1.327690 GCCTCCATCACCGTCCAGTA 61.328 60.000 0.00 0.00 0.00 2.74
2595 2902 1.191535 CCTCCATCACCGTCCAGTAA 58.808 55.000 0.00 0.00 0.00 2.24
2596 2903 1.134788 CCTCCATCACCGTCCAGTAAC 60.135 57.143 0.00 0.00 0.00 2.50
2597 2904 1.825474 CTCCATCACCGTCCAGTAACT 59.175 52.381 0.00 0.00 0.00 2.24
2598 2905 2.233922 CTCCATCACCGTCCAGTAACTT 59.766 50.000 0.00 0.00 0.00 2.66
2599 2906 2.232941 TCCATCACCGTCCAGTAACTTC 59.767 50.000 0.00 0.00 0.00 3.01
2600 2907 2.233922 CCATCACCGTCCAGTAACTTCT 59.766 50.000 0.00 0.00 0.00 2.85
2601 2908 3.254060 CATCACCGTCCAGTAACTTCTG 58.746 50.000 0.00 0.00 35.45 3.02
2602 2909 1.000506 TCACCGTCCAGTAACTTCTGC 59.999 52.381 0.00 0.00 34.47 4.26
2603 2910 1.045407 ACCGTCCAGTAACTTCTGCA 58.955 50.000 0.00 0.00 34.47 4.41
2604 2911 1.270147 ACCGTCCAGTAACTTCTGCAC 60.270 52.381 0.00 0.00 34.47 4.57
2605 2912 1.060713 CGTCCAGTAACTTCTGCACG 58.939 55.000 0.00 0.00 41.88 5.34
2606 2913 2.433868 GTCCAGTAACTTCTGCACGA 57.566 50.000 0.00 0.00 34.47 4.35
2607 2914 2.750948 GTCCAGTAACTTCTGCACGAA 58.249 47.619 0.00 0.00 34.47 3.85
2608 2915 3.326747 GTCCAGTAACTTCTGCACGAAT 58.673 45.455 0.00 0.00 34.47 3.34
2609 2916 3.368236 GTCCAGTAACTTCTGCACGAATC 59.632 47.826 0.00 0.00 34.47 2.52
2610 2917 3.258372 TCCAGTAACTTCTGCACGAATCT 59.742 43.478 0.00 0.00 34.47 2.40
2611 2918 3.997021 CCAGTAACTTCTGCACGAATCTT 59.003 43.478 0.00 0.00 34.47 2.40
2612 2919 4.143030 CCAGTAACTTCTGCACGAATCTTG 60.143 45.833 0.00 0.00 34.47 3.02
2613 2920 3.997021 AGTAACTTCTGCACGAATCTTGG 59.003 43.478 0.00 0.00 0.00 3.61
2614 2921 1.160137 ACTTCTGCACGAATCTTGGC 58.840 50.000 0.00 0.00 0.00 4.52
2615 2922 1.159285 CTTCTGCACGAATCTTGGCA 58.841 50.000 0.00 0.00 34.66 4.92
2616 2923 0.874390 TTCTGCACGAATCTTGGCAC 59.126 50.000 0.00 0.00 32.06 5.01
2617 2924 1.133253 CTGCACGAATCTTGGCACG 59.867 57.895 0.00 0.00 32.06 5.34
2618 2925 1.291184 CTGCACGAATCTTGGCACGA 61.291 55.000 0.00 0.00 32.06 4.35
2619 2926 0.882484 TGCACGAATCTTGGCACGAA 60.882 50.000 0.00 0.00 0.00 3.85
2620 2927 0.447801 GCACGAATCTTGGCACGAAT 59.552 50.000 0.00 0.00 0.00 3.34
2621 2928 1.135689 GCACGAATCTTGGCACGAATT 60.136 47.619 0.00 0.00 0.00 2.17
2622 2929 2.095213 GCACGAATCTTGGCACGAATTA 59.905 45.455 0.00 0.00 0.00 1.40
2623 2930 3.425625 GCACGAATCTTGGCACGAATTAA 60.426 43.478 0.00 0.00 0.00 1.40
2624 2931 4.088648 CACGAATCTTGGCACGAATTAAC 58.911 43.478 0.00 0.00 0.00 2.01
2625 2932 4.000988 ACGAATCTTGGCACGAATTAACT 58.999 39.130 0.00 0.00 0.00 2.24
2626 2933 4.142902 ACGAATCTTGGCACGAATTAACTG 60.143 41.667 0.00 0.00 0.00 3.16
2627 2934 4.092821 CGAATCTTGGCACGAATTAACTGA 59.907 41.667 0.00 0.00 0.00 3.41
2628 2935 5.220662 CGAATCTTGGCACGAATTAACTGAT 60.221 40.000 0.00 0.00 0.00 2.90
2629 2936 6.515272 AATCTTGGCACGAATTAACTGATT 57.485 33.333 0.00 0.00 0.00 2.57
2630 2937 5.957842 TCTTGGCACGAATTAACTGATTT 57.042 34.783 0.00 0.00 0.00 2.17
2631 2938 5.698832 TCTTGGCACGAATTAACTGATTTG 58.301 37.500 0.00 0.00 0.00 2.32
2632 2939 5.240623 TCTTGGCACGAATTAACTGATTTGT 59.759 36.000 0.00 0.00 34.66 2.83
2633 2940 6.428465 TCTTGGCACGAATTAACTGATTTGTA 59.572 34.615 0.00 0.00 33.01 2.41
2634 2941 6.751514 TGGCACGAATTAACTGATTTGTAT 57.248 33.333 0.00 0.00 33.01 2.29
2635 2942 6.550843 TGGCACGAATTAACTGATTTGTATG 58.449 36.000 0.00 0.00 33.01 2.39
2636 2943 6.150307 TGGCACGAATTAACTGATTTGTATGT 59.850 34.615 0.00 0.00 33.01 2.29
2637 2944 6.687105 GGCACGAATTAACTGATTTGTATGTC 59.313 38.462 0.00 0.00 33.01 3.06
2638 2945 7.240674 GCACGAATTAACTGATTTGTATGTCA 58.759 34.615 0.00 0.00 33.01 3.58
2639 2946 7.216317 GCACGAATTAACTGATTTGTATGTCAC 59.784 37.037 0.00 0.00 33.01 3.67
2640 2947 7.422462 CACGAATTAACTGATTTGTATGTCACG 59.578 37.037 0.00 0.00 33.01 4.35
2641 2948 7.117236 ACGAATTAACTGATTTGTATGTCACGT 59.883 33.333 0.00 0.00 33.01 4.49
2642 2949 8.588789 CGAATTAACTGATTTGTATGTCACGTA 58.411 33.333 0.00 0.00 0.00 3.57
2643 2950 9.901724 GAATTAACTGATTTGTATGTCACGTAG 57.098 33.333 0.00 0.00 0.00 3.51
2644 2951 7.821595 TTAACTGATTTGTATGTCACGTAGG 57.178 36.000 0.00 0.00 0.00 3.18
2645 2952 5.654603 ACTGATTTGTATGTCACGTAGGA 57.345 39.130 0.00 0.00 0.00 2.94
2646 2953 5.408356 ACTGATTTGTATGTCACGTAGGAC 58.592 41.667 0.00 0.00 38.29 3.85
2653 2960 0.039798 TGTCACGTAGGACAACTCGC 60.040 55.000 6.27 0.00 44.34 5.03
2654 2961 1.063951 GTCACGTAGGACAACTCGCG 61.064 60.000 0.00 0.00 37.73 5.87
2655 2962 1.081641 CACGTAGGACAACTCGCGT 60.082 57.895 5.77 0.00 40.11 6.01
2656 2963 1.081641 ACGTAGGACAACTCGCGTG 60.082 57.895 5.77 6.24 38.75 5.34
2657 2964 1.081641 CGTAGGACAACTCGCGTGT 60.082 57.895 8.21 8.21 0.00 4.49
2658 2965 1.334992 CGTAGGACAACTCGCGTGTG 61.335 60.000 15.31 11.22 0.00 3.82
2659 2966 0.318445 GTAGGACAACTCGCGTGTGT 60.318 55.000 15.31 14.20 0.00 3.72
2660 2967 0.318360 TAGGACAACTCGCGTGTGTG 60.318 55.000 15.31 15.98 0.00 3.82
2661 2968 2.594962 GGACAACTCGCGTGTGTGG 61.595 63.158 15.31 10.05 0.00 4.17
2662 2969 1.881252 GACAACTCGCGTGTGTGGT 60.881 57.895 15.31 10.81 0.00 4.16
2663 2970 2.089433 GACAACTCGCGTGTGTGGTG 62.089 60.000 15.45 11.49 0.00 4.17
2664 2971 2.171079 CAACTCGCGTGTGTGGTGT 61.171 57.895 15.31 0.00 0.00 4.16
2665 2972 1.881252 AACTCGCGTGTGTGGTGTC 60.881 57.895 15.31 0.00 0.00 3.67
2666 2973 2.027605 CTCGCGTGTGTGGTGTCT 59.972 61.111 5.77 0.00 0.00 3.41
2667 2974 2.279186 TCGCGTGTGTGGTGTCTG 60.279 61.111 5.77 0.00 0.00 3.51
2668 2975 2.279186 CGCGTGTGTGGTGTCTGA 60.279 61.111 0.00 0.00 0.00 3.27
2669 2976 2.302952 CGCGTGTGTGGTGTCTGAG 61.303 63.158 0.00 0.00 0.00 3.35
2670 2977 1.067416 GCGTGTGTGGTGTCTGAGA 59.933 57.895 0.00 0.00 0.00 3.27
2671 2978 0.941463 GCGTGTGTGGTGTCTGAGAG 60.941 60.000 0.00 0.00 0.00 3.20
2672 2979 0.668535 CGTGTGTGGTGTCTGAGAGA 59.331 55.000 0.00 0.00 0.00 3.10
2673 2980 1.335415 CGTGTGTGGTGTCTGAGAGAG 60.335 57.143 0.00 0.00 0.00 3.20
2674 2981 1.000283 GTGTGTGGTGTCTGAGAGAGG 60.000 57.143 0.00 0.00 0.00 3.69
2675 2982 1.333177 GTGTGGTGTCTGAGAGAGGT 58.667 55.000 0.00 0.00 0.00 3.85
2676 2983 1.271102 GTGTGGTGTCTGAGAGAGGTC 59.729 57.143 0.00 0.00 0.00 3.85
2677 2984 0.523966 GTGGTGTCTGAGAGAGGTCG 59.476 60.000 0.00 0.00 0.00 4.79
2678 2985 1.244697 TGGTGTCTGAGAGAGGTCGC 61.245 60.000 0.00 0.00 0.00 5.19
2679 2986 1.509004 GTGTCTGAGAGAGGTCGCC 59.491 63.158 0.00 0.00 0.00 5.54
2680 2987 1.679305 TGTCTGAGAGAGGTCGCCC 60.679 63.158 0.00 0.00 0.00 6.13
2681 2988 1.679305 GTCTGAGAGAGGTCGCCCA 60.679 63.158 0.00 0.00 0.00 5.36
2682 2989 1.679305 TCTGAGAGAGGTCGCCCAC 60.679 63.158 0.00 0.00 0.00 4.61
2683 2990 1.979155 CTGAGAGAGGTCGCCCACA 60.979 63.158 0.00 0.00 0.00 4.17
2684 2991 2.219325 CTGAGAGAGGTCGCCCACAC 62.219 65.000 0.00 0.00 0.00 3.82
2685 2992 2.203640 AGAGAGGTCGCCCACACA 60.204 61.111 0.00 0.00 0.00 3.72
2686 2993 1.608717 GAGAGAGGTCGCCCACACAT 61.609 60.000 0.00 0.00 0.00 3.21
2687 2994 1.153549 GAGAGGTCGCCCACACATC 60.154 63.158 0.00 0.00 0.00 3.06
2688 2995 2.125106 GAGGTCGCCCACACATCC 60.125 66.667 0.00 0.00 0.00 3.51
2689 2996 4.082523 AGGTCGCCCACACATCCG 62.083 66.667 0.00 0.00 0.00 4.18
2690 2997 4.388499 GGTCGCCCACACATCCGT 62.388 66.667 0.00 0.00 0.00 4.69
2691 2998 2.358247 GTCGCCCACACATCCGTT 60.358 61.111 0.00 0.00 0.00 4.44
2692 2999 1.964373 GTCGCCCACACATCCGTTT 60.964 57.895 0.00 0.00 0.00 3.60
2693 3000 1.228003 TCGCCCACACATCCGTTTT 60.228 52.632 0.00 0.00 0.00 2.43
2694 3001 0.035036 TCGCCCACACATCCGTTTTA 59.965 50.000 0.00 0.00 0.00 1.52
2695 3002 0.167251 CGCCCACACATCCGTTTTAC 59.833 55.000 0.00 0.00 0.00 2.01
2696 3003 0.524414 GCCCACACATCCGTTTTACC 59.476 55.000 0.00 0.00 0.00 2.85
2697 3004 1.898902 CCCACACATCCGTTTTACCA 58.101 50.000 0.00 0.00 0.00 3.25
2698 3005 1.538075 CCCACACATCCGTTTTACCAC 59.462 52.381 0.00 0.00 0.00 4.16
2699 3006 2.222886 CCACACATCCGTTTTACCACA 58.777 47.619 0.00 0.00 0.00 4.17
2700 3007 2.031508 CCACACATCCGTTTTACCACAC 60.032 50.000 0.00 0.00 0.00 3.82
2701 3008 1.868498 ACACATCCGTTTTACCACACG 59.132 47.619 0.00 0.00 36.12 4.49
2706 3013 2.535588 CGTTTTACCACACGGAGGG 58.464 57.895 0.00 0.00 35.59 4.30
2707 3014 0.952010 CGTTTTACCACACGGAGGGG 60.952 60.000 0.00 0.00 35.59 4.79
2708 3015 1.073548 TTTTACCACACGGAGGGGC 59.926 57.895 0.00 0.00 35.59 5.80
2709 3016 2.414658 TTTTACCACACGGAGGGGCC 62.415 60.000 0.00 0.00 35.59 5.80
2723 3030 4.887190 GGCCGGTGTGTGGGTGTT 62.887 66.667 1.90 0.00 0.00 3.32
2724 3031 2.831284 GCCGGTGTGTGGGTGTTT 60.831 61.111 1.90 0.00 0.00 2.83
2725 3032 1.526455 GCCGGTGTGTGGGTGTTTA 60.526 57.895 1.90 0.00 0.00 2.01
2726 3033 1.512156 GCCGGTGTGTGGGTGTTTAG 61.512 60.000 1.90 0.00 0.00 1.85
2727 3034 1.512156 CCGGTGTGTGGGTGTTTAGC 61.512 60.000 0.00 0.00 0.00 3.09
2728 3035 0.816018 CGGTGTGTGGGTGTTTAGCA 60.816 55.000 0.00 0.00 0.00 3.49
2729 3036 0.951558 GGTGTGTGGGTGTTTAGCAG 59.048 55.000 0.00 0.00 0.00 4.24
2730 3037 1.675552 GTGTGTGGGTGTTTAGCAGT 58.324 50.000 0.00 0.00 0.00 4.40
2731 3038 2.021457 GTGTGTGGGTGTTTAGCAGTT 58.979 47.619 0.00 0.00 0.00 3.16
2732 3039 2.032924 GTGTGTGGGTGTTTAGCAGTTC 59.967 50.000 0.00 0.00 0.00 3.01
2733 3040 1.263217 GTGTGGGTGTTTAGCAGTTCG 59.737 52.381 0.00 0.00 0.00 3.95
2734 3041 0.237498 GTGGGTGTTTAGCAGTTCGC 59.763 55.000 0.00 0.00 42.91 4.70
2735 3042 0.887387 TGGGTGTTTAGCAGTTCGCC 60.887 55.000 0.00 0.00 44.04 5.54
2736 3043 1.583495 GGGTGTTTAGCAGTTCGCCC 61.583 60.000 5.20 5.20 44.04 6.13
2737 3044 0.887387 GGTGTTTAGCAGTTCGCCCA 60.887 55.000 0.00 0.00 44.04 5.36
2738 3045 0.237498 GTGTTTAGCAGTTCGCCCAC 59.763 55.000 0.00 0.00 44.04 4.61
2739 3046 0.179043 TGTTTAGCAGTTCGCCCACA 60.179 50.000 0.00 0.00 44.04 4.17
2740 3047 0.237498 GTTTAGCAGTTCGCCCACAC 59.763 55.000 0.00 0.00 44.04 3.82
2741 3048 0.179043 TTTAGCAGTTCGCCCACACA 60.179 50.000 0.00 0.00 44.04 3.72
2742 3049 0.882927 TTAGCAGTTCGCCCACACAC 60.883 55.000 0.00 0.00 44.04 3.82
2743 3050 2.725203 TAGCAGTTCGCCCACACACC 62.725 60.000 0.00 0.00 44.04 4.16
2744 3051 2.203139 CAGTTCGCCCACACACCA 60.203 61.111 0.00 0.00 0.00 4.17
2745 3052 2.111043 AGTTCGCCCACACACCAG 59.889 61.111 0.00 0.00 0.00 4.00
2746 3053 2.203153 GTTCGCCCACACACCAGT 60.203 61.111 0.00 0.00 0.00 4.00
2747 3054 1.822186 GTTCGCCCACACACCAGTT 60.822 57.895 0.00 0.00 0.00 3.16
2748 3055 1.077357 TTCGCCCACACACCAGTTT 60.077 52.632 0.00 0.00 0.00 2.66
2749 3056 0.681564 TTCGCCCACACACCAGTTTT 60.682 50.000 0.00 0.00 0.00 2.43
2750 3057 1.098712 TCGCCCACACACCAGTTTTC 61.099 55.000 0.00 0.00 0.00 2.29
2751 3058 1.380403 CGCCCACACACCAGTTTTCA 61.380 55.000 0.00 0.00 0.00 2.69
2752 3059 0.385390 GCCCACACACCAGTTTTCAG 59.615 55.000 0.00 0.00 0.00 3.02
2753 3060 1.762708 CCCACACACCAGTTTTCAGT 58.237 50.000 0.00 0.00 0.00 3.41
2754 3061 1.676006 CCCACACACCAGTTTTCAGTC 59.324 52.381 0.00 0.00 0.00 3.51
2755 3062 2.364632 CCACACACCAGTTTTCAGTCA 58.635 47.619 0.00 0.00 0.00 3.41
2756 3063 2.097466 CCACACACCAGTTTTCAGTCAC 59.903 50.000 0.00 0.00 0.00 3.67
2757 3064 2.006888 ACACACCAGTTTTCAGTCACG 58.993 47.619 0.00 0.00 0.00 4.35
2758 3065 1.014352 ACACCAGTTTTCAGTCACGC 58.986 50.000 0.00 0.00 0.00 5.34
2759 3066 1.013596 CACCAGTTTTCAGTCACGCA 58.986 50.000 0.00 0.00 0.00 5.24
2760 3067 1.014352 ACCAGTTTTCAGTCACGCAC 58.986 50.000 0.00 0.00 0.00 5.34
2761 3068 1.013596 CCAGTTTTCAGTCACGCACA 58.986 50.000 0.00 0.00 0.00 4.57
2762 3069 1.400142 CCAGTTTTCAGTCACGCACAA 59.600 47.619 0.00 0.00 0.00 3.33
2763 3070 2.539547 CCAGTTTTCAGTCACGCACAAG 60.540 50.000 0.00 0.00 0.00 3.16
2764 3071 1.670811 AGTTTTCAGTCACGCACAAGG 59.329 47.619 0.00 0.00 0.00 3.61
2765 3072 1.021202 TTTTCAGTCACGCACAAGGG 58.979 50.000 0.00 0.00 0.00 3.95
2766 3073 1.444119 TTTCAGTCACGCACAAGGGC 61.444 55.000 0.00 0.00 0.00 5.19
2767 3074 2.281070 CAGTCACGCACAAGGGCT 60.281 61.111 0.00 0.00 0.00 5.19
2768 3075 2.281070 AGTCACGCACAAGGGCTG 60.281 61.111 0.00 0.00 0.00 4.85
2769 3076 3.357079 GTCACGCACAAGGGCTGG 61.357 66.667 0.00 0.00 0.00 4.85
2770 3077 3.872603 TCACGCACAAGGGCTGGT 61.873 61.111 0.00 0.00 0.00 4.00
2771 3078 3.663176 CACGCACAAGGGCTGGTG 61.663 66.667 0.00 0.00 38.05 4.17
2772 3079 4.189580 ACGCACAAGGGCTGGTGT 62.190 61.111 0.00 0.00 37.35 4.16
2773 3080 3.663176 CGCACAAGGGCTGGTGTG 61.663 66.667 10.16 10.16 46.40 3.82
2774 3081 2.519302 GCACAAGGGCTGGTGTGT 60.519 61.111 14.17 0.00 45.60 3.72
2775 3082 2.848858 GCACAAGGGCTGGTGTGTG 61.849 63.158 14.17 8.42 45.60 3.82
2776 3083 2.195567 CACAAGGGCTGGTGTGTGG 61.196 63.158 7.34 0.00 40.22 4.17
2777 3084 2.598394 CAAGGGCTGGTGTGTGGG 60.598 66.667 0.00 0.00 0.00 4.61
2778 3085 4.603535 AAGGGCTGGTGTGTGGGC 62.604 66.667 0.00 0.00 0.00 5.36
2782 3089 3.216292 GCTGGTGTGTGGGCGTTT 61.216 61.111 0.00 0.00 0.00 3.60
2783 3090 2.721231 CTGGTGTGTGGGCGTTTG 59.279 61.111 0.00 0.00 0.00 2.93
2784 3091 3.483235 CTGGTGTGTGGGCGTTTGC 62.483 63.158 0.00 0.00 41.71 3.68
2794 3101 4.179579 GCGTTTGCCATCTCGCCC 62.180 66.667 0.00 0.00 42.33 6.13
2795 3102 2.745884 CGTTTGCCATCTCGCCCA 60.746 61.111 0.00 0.00 0.00 5.36
2796 3103 2.877691 GTTTGCCATCTCGCCCAC 59.122 61.111 0.00 0.00 0.00 4.61
2797 3104 1.971167 GTTTGCCATCTCGCCCACA 60.971 57.895 0.00 0.00 0.00 4.17
2798 3105 1.971167 TTTGCCATCTCGCCCACAC 60.971 57.895 0.00 0.00 0.00 3.82
2799 3106 2.689035 TTTGCCATCTCGCCCACACA 62.689 55.000 0.00 0.00 0.00 3.72
2800 3107 3.127533 GCCATCTCGCCCACACAC 61.128 66.667 0.00 0.00 0.00 3.82
2801 3108 2.436646 CCATCTCGCCCACACACC 60.437 66.667 0.00 0.00 0.00 4.16
2802 3109 2.436646 CATCTCGCCCACACACCC 60.437 66.667 0.00 0.00 0.00 4.61
2803 3110 4.082523 ATCTCGCCCACACACCCG 62.083 66.667 0.00 0.00 0.00 5.28
2810 3117 4.394712 CCACACACCCGCCTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
2811 3118 3.314331 CACACACCCGCCTCCTCT 61.314 66.667 0.00 0.00 0.00 3.69
2812 3119 2.997897 ACACACCCGCCTCCTCTC 60.998 66.667 0.00 0.00 0.00 3.20
2813 3120 3.775654 CACACCCGCCTCCTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
2818 3125 3.775654 CCGCCTCCTCTCCCACAC 61.776 72.222 0.00 0.00 0.00 3.82
2819 3126 2.681778 CGCCTCCTCTCCCACACT 60.682 66.667 0.00 0.00 0.00 3.55
2820 3127 2.716017 CGCCTCCTCTCCCACACTC 61.716 68.421 0.00 0.00 0.00 3.51
2821 3128 1.610673 GCCTCCTCTCCCACACTCA 60.611 63.158 0.00 0.00 0.00 3.41
2822 3129 1.194781 GCCTCCTCTCCCACACTCAA 61.195 60.000 0.00 0.00 0.00 3.02
2823 3130 0.901124 CCTCCTCTCCCACACTCAAG 59.099 60.000 0.00 0.00 0.00 3.02
2824 3131 0.248843 CTCCTCTCCCACACTCAAGC 59.751 60.000 0.00 0.00 0.00 4.01
2825 3132 0.178921 TCCTCTCCCACACTCAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
2826 3133 0.036577 CCTCTCCCACACTCAAGCTG 60.037 60.000 0.00 0.00 0.00 4.24
2827 3134 0.673022 CTCTCCCACACTCAAGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
2828 3135 1.673665 CTCCCACACTCAAGCTGCC 60.674 63.158 0.00 0.00 0.00 4.85
2829 3136 2.113774 CCCACACTCAAGCTGCCA 59.886 61.111 0.00 0.00 0.00 4.92
2830 3137 1.970114 CCCACACTCAAGCTGCCAG 60.970 63.158 0.00 0.00 0.00 4.85
2831 3138 1.228063 CCACACTCAAGCTGCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
2832 3139 0.820891 CCACACTCAAGCTGCCAGTT 60.821 55.000 0.00 0.00 0.00 3.16
2833 3140 0.309922 CACACTCAAGCTGCCAGTTG 59.690 55.000 0.00 0.00 0.00 3.16
2834 3141 1.285023 CACTCAAGCTGCCAGTTGC 59.715 57.895 0.00 0.00 41.77 4.17
2835 3142 1.900498 ACTCAAGCTGCCAGTTGCC 60.900 57.895 0.00 0.00 40.16 4.52
2836 3143 1.900016 CTCAAGCTGCCAGTTGCCA 60.900 57.895 0.00 0.00 40.16 4.92
2837 3144 1.228644 TCAAGCTGCCAGTTGCCAT 60.229 52.632 0.00 0.00 40.16 4.40
2838 3145 1.080093 CAAGCTGCCAGTTGCCATG 60.080 57.895 0.00 0.00 40.16 3.66
2839 3146 2.939261 AAGCTGCCAGTTGCCATGC 61.939 57.895 0.00 0.00 40.16 4.06
2840 3147 4.789075 GCTGCCAGTTGCCATGCG 62.789 66.667 0.00 0.00 40.16 4.73
2841 3148 3.367743 CTGCCAGTTGCCATGCGT 61.368 61.111 0.00 0.00 40.16 5.24
2842 3149 2.911509 TGCCAGTTGCCATGCGTT 60.912 55.556 0.00 0.00 40.16 4.84
2843 3150 2.339712 GCCAGTTGCCATGCGTTT 59.660 55.556 0.00 0.00 0.00 3.60
2844 3151 1.300853 GCCAGTTGCCATGCGTTTT 60.301 52.632 0.00 0.00 0.00 2.43
2845 3152 1.559149 GCCAGTTGCCATGCGTTTTG 61.559 55.000 0.00 0.00 0.00 2.44
2846 3153 1.559149 CCAGTTGCCATGCGTTTTGC 61.559 55.000 0.00 0.00 46.70 3.68
2857 3164 1.685302 GCGTTTTGCAGTGTACATGG 58.315 50.000 0.00 0.00 45.45 3.66
2858 3165 1.685302 CGTTTTGCAGTGTACATGGC 58.315 50.000 13.09 13.09 0.00 4.40
2859 3166 1.001924 CGTTTTGCAGTGTACATGGCA 60.002 47.619 17.30 17.30 0.00 4.92
2860 3167 2.542618 CGTTTTGCAGTGTACATGGCAA 60.543 45.455 24.54 24.54 43.79 4.52
2861 3168 2.791383 TTTGCAGTGTACATGGCAAC 57.209 45.000 26.78 4.07 44.99 4.17
2862 3169 1.979855 TTGCAGTGTACATGGCAACT 58.020 45.000 24.54 4.62 40.94 3.16
2863 3170 1.237533 TGCAGTGTACATGGCAACTG 58.762 50.000 18.49 15.65 32.54 3.16
2864 3171 0.109597 GCAGTGTACATGGCAACTGC 60.110 55.000 24.01 24.01 42.64 4.40
2874 3181 4.800554 GCAACTGCCCTAGTGTGT 57.199 55.556 0.00 0.00 40.26 3.72
2875 3182 3.021451 GCAACTGCCCTAGTGTGTT 57.979 52.632 0.00 0.00 40.26 3.32
2876 3183 1.318576 GCAACTGCCCTAGTGTGTTT 58.681 50.000 0.00 0.00 40.26 2.83
2877 3184 1.001378 GCAACTGCCCTAGTGTGTTTG 60.001 52.381 0.00 0.00 40.26 2.93
2878 3185 1.001378 CAACTGCCCTAGTGTGTTTGC 60.001 52.381 0.00 0.00 40.26 3.68
2879 3186 0.182537 ACTGCCCTAGTGTGTTTGCA 59.817 50.000 0.00 0.00 38.49 4.08
2880 3187 1.317613 CTGCCCTAGTGTGTTTGCAA 58.682 50.000 0.00 0.00 0.00 4.08
2881 3188 1.267806 CTGCCCTAGTGTGTTTGCAAG 59.732 52.381 0.00 0.00 0.00 4.01
2882 3189 0.039165 GCCCTAGTGTGTTTGCAAGC 60.039 55.000 6.31 6.31 0.00 4.01
2883 3190 1.317613 CCCTAGTGTGTTTGCAAGCA 58.682 50.000 12.36 12.36 0.00 3.91
2884 3191 1.267806 CCCTAGTGTGTTTGCAAGCAG 59.732 52.381 16.90 4.42 0.00 4.24
2885 3192 2.221169 CCTAGTGTGTTTGCAAGCAGA 58.779 47.619 16.90 12.92 0.00 4.26
2886 3193 2.816087 CCTAGTGTGTTTGCAAGCAGAT 59.184 45.455 16.90 7.99 0.00 2.90
2887 3194 2.787601 AGTGTGTTTGCAAGCAGATG 57.212 45.000 16.90 0.00 0.00 2.90
2888 3195 1.338973 AGTGTGTTTGCAAGCAGATGG 59.661 47.619 16.90 0.00 0.00 3.51
2889 3196 0.032403 TGTGTTTGCAAGCAGATGGC 59.968 50.000 16.90 5.11 45.30 4.40
2892 3199 1.142474 GTTTGCAAGCAGATGGCAAC 58.858 50.000 8.58 0.00 46.15 4.17
2893 3200 1.042229 TTTGCAAGCAGATGGCAACT 58.958 45.000 0.00 0.00 46.15 3.16
2894 3201 1.000060 TTTGCAAGCAGATGGCAACTC 60.000 47.619 0.00 0.00 46.15 3.01
2895 3202 3.338725 TTTGCAAGCAGATGGCAACTCT 61.339 45.455 0.00 0.00 46.15 3.24
2896 3203 5.163025 TTTGCAAGCAGATGGCAACTCTC 62.163 47.826 0.00 0.00 46.15 3.20
2901 3208 3.930634 GCAGATGGCAACTCTCTTTTT 57.069 42.857 0.00 0.00 43.97 1.94
2922 3229 4.822036 TTTTACCCGAACATGTCAGTTG 57.178 40.909 0.00 0.00 0.00 3.16
2923 3230 1.803334 TACCCGAACATGTCAGTTGC 58.197 50.000 0.00 0.00 0.00 4.17
2924 3231 0.889186 ACCCGAACATGTCAGTTGCC 60.889 55.000 0.00 0.00 0.00 4.52
2925 3232 0.888736 CCCGAACATGTCAGTTGCCA 60.889 55.000 0.00 0.00 0.00 4.92
2926 3233 1.167851 CCGAACATGTCAGTTGCCAT 58.832 50.000 0.00 0.00 0.00 4.40
2927 3234 2.355197 CCGAACATGTCAGTTGCCATA 58.645 47.619 0.00 0.00 0.00 2.74
2928 3235 2.945008 CCGAACATGTCAGTTGCCATAT 59.055 45.455 0.00 0.00 0.00 1.78
2929 3236 3.242837 CCGAACATGTCAGTTGCCATATG 60.243 47.826 0.00 0.00 0.00 1.78
2930 3237 3.374988 CGAACATGTCAGTTGCCATATGT 59.625 43.478 0.00 0.00 0.00 2.29
2931 3238 4.142622 CGAACATGTCAGTTGCCATATGTT 60.143 41.667 0.00 0.00 40.32 2.71
2932 3239 5.619757 CGAACATGTCAGTTGCCATATGTTT 60.620 40.000 0.00 0.00 38.45 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.227853 GAACTGTTGGAGCACGGGT 60.228 57.895 0.00 0.00 0.00 5.28
219 220 2.949451 AGAGCTTGTACATGTCCTCG 57.051 50.000 0.00 0.00 0.00 4.63
456 457 3.020237 GCTCCTCGGAGGGAACACC 62.020 68.421 23.39 3.03 42.19 4.16
548 549 2.092291 TCGATTGCCTTGTCGACGC 61.092 57.895 11.62 9.03 41.44 5.19
633 634 4.566004 CCTAGACGAATGTGTTTGGAAGA 58.434 43.478 0.00 0.00 0.00 2.87
636 637 2.614481 GGCCTAGACGAATGTGTTTGGA 60.614 50.000 0.00 0.00 0.00 3.53
654 655 3.553095 AAGAAGCGTCCTGGTGGCC 62.553 63.158 0.00 0.00 0.00 5.36
669 670 1.497991 CGTCGTCTTGCAGGAAAAGA 58.502 50.000 0.00 0.00 0.00 2.52
672 673 1.959226 GCCGTCGTCTTGCAGGAAA 60.959 57.895 0.00 0.00 0.00 3.13
819 823 1.298993 CAGCTGCCAGATGGTGTCT 59.701 57.895 1.02 0.00 37.80 3.41
1041 1045 1.066858 GTCATCTCGAAGAAGCCACCA 60.067 52.381 0.00 0.00 34.09 4.17
1158 1399 2.203788 TCCTCCTTCGCCACACCT 60.204 61.111 0.00 0.00 0.00 4.00
1722 1963 0.724785 CGAACGCCTTTTTCGCCTTC 60.725 55.000 0.00 0.00 39.43 3.46
1848 2089 2.832129 GTCAGATGTGTTGGGGTAGAGA 59.168 50.000 0.00 0.00 0.00 3.10
1974 2217 3.081061 ACATGCAGCGTTCCTTATTTGA 58.919 40.909 0.00 0.00 0.00 2.69
2069 2313 0.879400 TTGCATTGCGGCCAAAACAG 60.879 50.000 2.24 0.00 34.05 3.16
2245 2501 1.873591 AGTGGTCGACATCAGCAAAAC 59.126 47.619 18.91 0.00 0.00 2.43
2280 2536 8.972262 AACAGAGAGAAAAGAGAAAACAAAAC 57.028 30.769 0.00 0.00 0.00 2.43
2329 2602 7.041235 ACAAAAATTATGGTTGCCATGAACAAG 60.041 33.333 10.64 0.00 44.84 3.16
2361 2634 7.588512 CAAAAGTTACCATCTCAGGAGAAAAG 58.411 38.462 2.68 0.00 41.36 2.27
2433 2740 7.758980 TGGACAAAAATATCACATGGAAAATCG 59.241 33.333 0.00 0.00 0.00 3.34
2526 2833 0.938713 TGTGGGCGTTACACTTTTCG 59.061 50.000 7.55 0.00 39.52 3.46
2527 2834 1.333435 CGTGTGGGCGTTACACTTTTC 60.333 52.381 13.74 1.87 44.70 2.29
2528 2835 0.658897 CGTGTGGGCGTTACACTTTT 59.341 50.000 13.74 0.00 44.70 2.27
2529 2836 0.462403 ACGTGTGGGCGTTACACTTT 60.462 50.000 13.74 1.89 44.70 2.66
2530 2837 1.144496 ACGTGTGGGCGTTACACTT 59.856 52.632 13.74 4.69 44.70 3.16
2531 2838 1.593209 CACGTGTGGGCGTTACACT 60.593 57.895 7.58 2.38 44.70 3.55
2532 2839 1.884004 ACACGTGTGGGCGTTACAC 60.884 57.895 22.71 7.86 43.83 2.90
2533 2840 1.883544 CACACGTGTGGGCGTTACA 60.884 57.895 35.65 0.00 43.83 2.41
2534 2841 2.932905 CACACGTGTGGGCGTTAC 59.067 61.111 35.65 0.00 43.83 2.50
2553 2860 1.302192 TGGGTGAGTTGGCTAACGC 60.302 57.895 9.73 9.73 41.71 4.84
2554 2861 0.250124 TGTGGGTGAGTTGGCTAACG 60.250 55.000 7.35 0.00 41.71 3.18
2555 2862 1.235724 GTGTGGGTGAGTTGGCTAAC 58.764 55.000 4.51 4.51 37.06 2.34
2556 2863 0.250124 CGTGTGGGTGAGTTGGCTAA 60.250 55.000 0.00 0.00 0.00 3.09
2557 2864 1.369692 CGTGTGGGTGAGTTGGCTA 59.630 57.895 0.00 0.00 0.00 3.93
2558 2865 2.111043 CGTGTGGGTGAGTTGGCT 59.889 61.111 0.00 0.00 0.00 4.75
2559 2866 3.660111 GCGTGTGGGTGAGTTGGC 61.660 66.667 0.00 0.00 0.00 4.52
2560 2867 2.978010 GGCGTGTGGGTGAGTTGG 60.978 66.667 0.00 0.00 0.00 3.77
2561 2868 1.961277 GAGGCGTGTGGGTGAGTTG 60.961 63.158 0.00 0.00 0.00 3.16
2562 2869 2.426023 GAGGCGTGTGGGTGAGTT 59.574 61.111 0.00 0.00 0.00 3.01
2563 2870 3.626924 GGAGGCGTGTGGGTGAGT 61.627 66.667 0.00 0.00 0.00 3.41
2564 2871 2.859273 GATGGAGGCGTGTGGGTGAG 62.859 65.000 0.00 0.00 0.00 3.51
2565 2872 2.927856 ATGGAGGCGTGTGGGTGA 60.928 61.111 0.00 0.00 0.00 4.02
2566 2873 2.436646 GATGGAGGCGTGTGGGTG 60.437 66.667 0.00 0.00 0.00 4.61
2567 2874 2.927856 TGATGGAGGCGTGTGGGT 60.928 61.111 0.00 0.00 0.00 4.51
2568 2875 2.436646 GTGATGGAGGCGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
2569 2876 2.436646 GGTGATGGAGGCGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
2570 2877 2.815211 CGGTGATGGAGGCGTGTG 60.815 66.667 0.00 0.00 0.00 3.82
2571 2878 3.296709 GACGGTGATGGAGGCGTGT 62.297 63.158 0.00 0.00 0.00 4.49
2572 2879 2.509336 GACGGTGATGGAGGCGTG 60.509 66.667 0.00 0.00 0.00 5.34
2573 2880 3.771160 GGACGGTGATGGAGGCGT 61.771 66.667 0.00 0.00 0.00 5.68
2574 2881 3.723235 CTGGACGGTGATGGAGGCG 62.723 68.421 0.00 0.00 0.00 5.52
2575 2882 1.327690 TACTGGACGGTGATGGAGGC 61.328 60.000 0.00 0.00 0.00 4.70
2576 2883 1.134788 GTTACTGGACGGTGATGGAGG 60.135 57.143 0.00 0.00 0.00 4.30
2577 2884 1.825474 AGTTACTGGACGGTGATGGAG 59.175 52.381 0.00 0.00 0.00 3.86
2578 2885 1.933021 AGTTACTGGACGGTGATGGA 58.067 50.000 0.00 0.00 0.00 3.41
2579 2886 2.233922 AGAAGTTACTGGACGGTGATGG 59.766 50.000 0.00 0.00 0.00 3.51
2580 2887 3.254060 CAGAAGTTACTGGACGGTGATG 58.746 50.000 0.00 0.00 34.64 3.07
2581 2888 2.353803 GCAGAAGTTACTGGACGGTGAT 60.354 50.000 0.00 0.00 38.22 3.06
2582 2889 1.000506 GCAGAAGTTACTGGACGGTGA 59.999 52.381 0.00 0.00 38.22 4.02
2583 2890 1.270094 TGCAGAAGTTACTGGACGGTG 60.270 52.381 0.00 0.00 38.22 4.94
2584 2891 1.045407 TGCAGAAGTTACTGGACGGT 58.955 50.000 0.00 0.00 38.22 4.83
2585 2892 1.429463 GTGCAGAAGTTACTGGACGG 58.571 55.000 0.00 0.00 45.71 4.79
2588 2895 3.258372 AGATTCGTGCAGAAGTTACTGGA 59.742 43.478 0.00 0.00 42.92 3.86
2589 2896 3.589988 AGATTCGTGCAGAAGTTACTGG 58.410 45.455 0.00 0.00 42.92 4.00
2590 2897 4.143030 CCAAGATTCGTGCAGAAGTTACTG 60.143 45.833 0.00 0.00 42.92 2.74
2591 2898 3.997021 CCAAGATTCGTGCAGAAGTTACT 59.003 43.478 0.00 0.00 42.92 2.24
2592 2899 3.424962 GCCAAGATTCGTGCAGAAGTTAC 60.425 47.826 0.00 0.00 42.92 2.50
2593 2900 2.742053 GCCAAGATTCGTGCAGAAGTTA 59.258 45.455 0.00 0.00 42.92 2.24
2594 2901 1.537202 GCCAAGATTCGTGCAGAAGTT 59.463 47.619 0.00 0.00 42.92 2.66
2595 2902 1.160137 GCCAAGATTCGTGCAGAAGT 58.840 50.000 0.00 0.00 42.92 3.01
2596 2903 1.135859 GTGCCAAGATTCGTGCAGAAG 60.136 52.381 0.00 0.00 42.92 2.85
2597 2904 0.874390 GTGCCAAGATTCGTGCAGAA 59.126 50.000 0.00 0.00 43.93 3.02
2598 2905 1.291184 CGTGCCAAGATTCGTGCAGA 61.291 55.000 0.00 0.00 33.80 4.26
2599 2906 1.133253 CGTGCCAAGATTCGTGCAG 59.867 57.895 0.00 0.00 33.80 4.41
2600 2907 0.882484 TTCGTGCCAAGATTCGTGCA 60.882 50.000 0.00 0.00 0.00 4.57
2601 2908 0.447801 ATTCGTGCCAAGATTCGTGC 59.552 50.000 0.00 0.00 0.00 5.34
2602 2909 2.900122 AATTCGTGCCAAGATTCGTG 57.100 45.000 0.00 0.00 0.00 4.35
2603 2910 4.000988 AGTTAATTCGTGCCAAGATTCGT 58.999 39.130 0.00 0.00 0.00 3.85
2604 2911 4.092821 TCAGTTAATTCGTGCCAAGATTCG 59.907 41.667 0.00 0.00 0.00 3.34
2605 2912 5.545658 TCAGTTAATTCGTGCCAAGATTC 57.454 39.130 0.00 0.00 0.00 2.52
2606 2913 6.515272 AATCAGTTAATTCGTGCCAAGATT 57.485 33.333 0.00 0.00 0.00 2.40
2607 2914 6.071952 ACAAATCAGTTAATTCGTGCCAAGAT 60.072 34.615 0.00 0.00 0.00 2.40
2608 2915 5.240623 ACAAATCAGTTAATTCGTGCCAAGA 59.759 36.000 0.00 0.00 0.00 3.02
2609 2916 5.460646 ACAAATCAGTTAATTCGTGCCAAG 58.539 37.500 0.00 0.00 0.00 3.61
2610 2917 5.446143 ACAAATCAGTTAATTCGTGCCAA 57.554 34.783 0.00 0.00 0.00 4.52
2611 2918 6.150307 ACATACAAATCAGTTAATTCGTGCCA 59.850 34.615 0.00 0.00 0.00 4.92
2612 2919 6.551736 ACATACAAATCAGTTAATTCGTGCC 58.448 36.000 0.00 0.00 0.00 5.01
2613 2920 7.216317 GTGACATACAAATCAGTTAATTCGTGC 59.784 37.037 0.00 0.00 0.00 5.34
2614 2921 7.422462 CGTGACATACAAATCAGTTAATTCGTG 59.578 37.037 0.00 0.00 0.00 4.35
2615 2922 7.117236 ACGTGACATACAAATCAGTTAATTCGT 59.883 33.333 0.00 0.00 0.00 3.85
2616 2923 7.453034 ACGTGACATACAAATCAGTTAATTCG 58.547 34.615 0.00 0.00 0.00 3.34
2617 2924 9.901724 CTACGTGACATACAAATCAGTTAATTC 57.098 33.333 0.00 0.00 0.00 2.17
2618 2925 8.879759 CCTACGTGACATACAAATCAGTTAATT 58.120 33.333 0.00 0.00 0.00 1.40
2619 2926 8.255206 TCCTACGTGACATACAAATCAGTTAAT 58.745 33.333 0.00 0.00 0.00 1.40
2620 2927 7.543172 GTCCTACGTGACATACAAATCAGTTAA 59.457 37.037 0.00 0.00 35.29 2.01
2621 2928 7.031372 GTCCTACGTGACATACAAATCAGTTA 58.969 38.462 0.00 0.00 35.29 2.24
2622 2929 5.867716 GTCCTACGTGACATACAAATCAGTT 59.132 40.000 0.00 0.00 35.29 3.16
2623 2930 5.047590 TGTCCTACGTGACATACAAATCAGT 60.048 40.000 4.71 0.00 40.22 3.41
2624 2931 5.407502 TGTCCTACGTGACATACAAATCAG 58.592 41.667 4.71 0.00 40.22 2.90
2625 2932 5.394224 TGTCCTACGTGACATACAAATCA 57.606 39.130 4.71 0.00 40.22 2.57
2626 2933 5.867716 AGTTGTCCTACGTGACATACAAATC 59.132 40.000 9.28 0.00 44.27 2.17
2627 2934 5.790593 AGTTGTCCTACGTGACATACAAAT 58.209 37.500 9.28 4.39 44.27 2.32
2628 2935 5.204409 AGTTGTCCTACGTGACATACAAA 57.796 39.130 9.28 0.00 44.27 2.83
2629 2936 4.614306 CGAGTTGTCCTACGTGACATACAA 60.614 45.833 9.28 4.96 44.27 2.41
2630 2937 3.120095 CGAGTTGTCCTACGTGACATACA 60.120 47.826 9.28 0.00 44.27 2.29
2631 2938 3.423571 CGAGTTGTCCTACGTGACATAC 58.576 50.000 9.28 10.04 44.27 2.39
2632 2939 2.159476 GCGAGTTGTCCTACGTGACATA 60.159 50.000 9.28 0.00 44.27 2.29
2633 2940 1.402456 GCGAGTTGTCCTACGTGACAT 60.402 52.381 9.28 0.00 44.27 3.06
2634 2941 0.039798 GCGAGTTGTCCTACGTGACA 60.040 55.000 4.71 4.71 43.26 3.58
2635 2942 1.063951 CGCGAGTTGTCCTACGTGAC 61.064 60.000 0.00 0.00 38.28 3.67
2636 2943 1.208358 CGCGAGTTGTCCTACGTGA 59.792 57.895 0.00 0.00 38.28 4.35
2637 2944 1.081641 ACGCGAGTTGTCCTACGTG 60.082 57.895 15.93 0.00 46.40 4.49
2638 2945 1.081641 CACGCGAGTTGTCCTACGT 60.082 57.895 15.93 0.00 46.40 3.57
2639 2946 1.081641 ACACGCGAGTTGTCCTACG 60.082 57.895 15.93 0.00 46.40 3.51
2640 2947 0.318445 ACACACGCGAGTTGTCCTAC 60.318 55.000 15.93 0.00 46.40 3.18
2641 2948 0.318360 CACACACGCGAGTTGTCCTA 60.318 55.000 15.93 0.00 46.40 2.94
2642 2949 1.591594 CACACACGCGAGTTGTCCT 60.592 57.895 15.93 0.00 46.40 3.85
2643 2950 2.594962 CCACACACGCGAGTTGTCC 61.595 63.158 15.93 0.00 46.40 4.02
2644 2951 1.881252 ACCACACACGCGAGTTGTC 60.881 57.895 15.93 0.00 46.40 3.18
2645 2952 2.171079 CACCACACACGCGAGTTGT 61.171 57.895 15.93 9.84 46.40 3.32
2646 2953 2.089433 GACACCACACACGCGAGTTG 62.089 60.000 15.93 9.00 46.40 3.16
2647 2954 1.881252 GACACCACACACGCGAGTT 60.881 57.895 15.93 0.00 46.40 3.01
2649 2956 2.027605 AGACACCACACACGCGAG 59.972 61.111 15.93 7.88 0.00 5.03
2650 2957 2.279186 CAGACACCACACACGCGA 60.279 61.111 15.93 0.00 0.00 5.87
2651 2958 2.279186 TCAGACACCACACACGCG 60.279 61.111 3.53 3.53 0.00 6.01
2652 2959 0.941463 CTCTCAGACACCACACACGC 60.941 60.000 0.00 0.00 0.00 5.34
2653 2960 0.668535 TCTCTCAGACACCACACACG 59.331 55.000 0.00 0.00 0.00 4.49
2654 2961 1.000283 CCTCTCTCAGACACCACACAC 60.000 57.143 0.00 0.00 0.00 3.82
2655 2962 1.332195 CCTCTCTCAGACACCACACA 58.668 55.000 0.00 0.00 0.00 3.72
2656 2963 1.271102 GACCTCTCTCAGACACCACAC 59.729 57.143 0.00 0.00 0.00 3.82
2657 2964 1.621992 GACCTCTCTCAGACACCACA 58.378 55.000 0.00 0.00 0.00 4.17
2658 2965 0.523966 CGACCTCTCTCAGACACCAC 59.476 60.000 0.00 0.00 0.00 4.16
2659 2966 1.244697 GCGACCTCTCTCAGACACCA 61.245 60.000 0.00 0.00 0.00 4.17
2660 2967 1.509004 GCGACCTCTCTCAGACACC 59.491 63.158 0.00 0.00 0.00 4.16
2661 2968 1.509004 GGCGACCTCTCTCAGACAC 59.491 63.158 0.00 0.00 0.00 3.67
2662 2969 4.004348 GGCGACCTCTCTCAGACA 57.996 61.111 0.00 0.00 0.00 3.41
2674 2981 1.512156 AAAACGGATGTGTGGGCGAC 61.512 55.000 0.00 0.00 0.00 5.19
2675 2982 0.035036 TAAAACGGATGTGTGGGCGA 59.965 50.000 0.00 0.00 0.00 5.54
2676 2983 0.167251 GTAAAACGGATGTGTGGGCG 59.833 55.000 0.00 0.00 0.00 6.13
2677 2984 0.524414 GGTAAAACGGATGTGTGGGC 59.476 55.000 0.00 0.00 0.00 5.36
2678 2985 1.538075 GTGGTAAAACGGATGTGTGGG 59.462 52.381 0.00 0.00 0.00 4.61
2679 2986 2.031508 GTGTGGTAAAACGGATGTGTGG 60.032 50.000 0.00 0.00 0.00 4.17
2680 2987 2.349060 CGTGTGGTAAAACGGATGTGTG 60.349 50.000 0.00 0.00 36.17 3.82
2681 2988 1.868498 CGTGTGGTAAAACGGATGTGT 59.132 47.619 0.00 0.00 36.17 3.72
2682 2989 2.587612 CGTGTGGTAAAACGGATGTG 57.412 50.000 0.00 0.00 36.17 3.21
2688 2995 0.952010 CCCCTCCGTGTGGTAAAACG 60.952 60.000 0.00 0.00 39.48 3.60
2689 2996 1.239296 GCCCCTCCGTGTGGTAAAAC 61.239 60.000 0.00 0.00 36.30 2.43
2690 2997 1.073548 GCCCCTCCGTGTGGTAAAA 59.926 57.895 0.00 0.00 36.30 1.52
2691 2998 2.751688 GCCCCTCCGTGTGGTAAA 59.248 61.111 0.00 0.00 36.30 2.01
2692 2999 3.324108 GGCCCCTCCGTGTGGTAA 61.324 66.667 0.00 0.00 36.30 2.85
2706 3013 2.962142 TAAACACCCACACACCGGCC 62.962 60.000 0.00 0.00 0.00 6.13
2707 3014 1.512156 CTAAACACCCACACACCGGC 61.512 60.000 0.00 0.00 0.00 6.13
2708 3015 1.512156 GCTAAACACCCACACACCGG 61.512 60.000 0.00 0.00 0.00 5.28
2709 3016 0.816018 TGCTAAACACCCACACACCG 60.816 55.000 0.00 0.00 0.00 4.94
2710 3017 0.951558 CTGCTAAACACCCACACACC 59.048 55.000 0.00 0.00 0.00 4.16
2711 3018 1.675552 ACTGCTAAACACCCACACAC 58.324 50.000 0.00 0.00 0.00 3.82
2712 3019 2.294074 GAACTGCTAAACACCCACACA 58.706 47.619 0.00 0.00 0.00 3.72
2713 3020 1.263217 CGAACTGCTAAACACCCACAC 59.737 52.381 0.00 0.00 0.00 3.82
2714 3021 1.588674 CGAACTGCTAAACACCCACA 58.411 50.000 0.00 0.00 0.00 4.17
2715 3022 0.237498 GCGAACTGCTAAACACCCAC 59.763 55.000 0.00 0.00 41.73 4.61
2716 3023 0.887387 GGCGAACTGCTAAACACCCA 60.887 55.000 0.00 0.00 45.43 4.51
2717 3024 1.583495 GGGCGAACTGCTAAACACCC 61.583 60.000 0.00 0.00 45.43 4.61
2718 3025 0.887387 TGGGCGAACTGCTAAACACC 60.887 55.000 0.00 0.00 45.43 4.16
2719 3026 0.237498 GTGGGCGAACTGCTAAACAC 59.763 55.000 0.00 0.00 45.43 3.32
2720 3027 0.179043 TGTGGGCGAACTGCTAAACA 60.179 50.000 0.00 0.00 45.43 2.83
2721 3028 0.237498 GTGTGGGCGAACTGCTAAAC 59.763 55.000 0.00 0.00 45.43 2.01
2722 3029 0.179043 TGTGTGGGCGAACTGCTAAA 60.179 50.000 0.00 0.00 45.43 1.85
2723 3030 0.882927 GTGTGTGGGCGAACTGCTAA 60.883 55.000 0.00 0.00 45.43 3.09
2724 3031 1.301401 GTGTGTGGGCGAACTGCTA 60.301 57.895 0.00 0.00 45.43 3.49
2725 3032 2.591715 GTGTGTGGGCGAACTGCT 60.592 61.111 0.00 0.00 45.43 4.24
2726 3033 3.660111 GGTGTGTGGGCGAACTGC 61.660 66.667 0.00 0.00 45.38 4.40
2727 3034 2.203139 TGGTGTGTGGGCGAACTG 60.203 61.111 0.00 0.00 0.00 3.16
2728 3035 2.111043 CTGGTGTGTGGGCGAACT 59.889 61.111 0.00 0.00 0.00 3.01
2729 3036 1.381165 AAACTGGTGTGTGGGCGAAC 61.381 55.000 0.00 0.00 0.00 3.95
2730 3037 0.681564 AAAACTGGTGTGTGGGCGAA 60.682 50.000 0.00 0.00 0.00 4.70
2731 3038 1.077357 AAAACTGGTGTGTGGGCGA 60.077 52.632 0.00 0.00 0.00 5.54
2732 3039 1.358759 GAAAACTGGTGTGTGGGCG 59.641 57.895 0.00 0.00 0.00 6.13
2733 3040 0.385390 CTGAAAACTGGTGTGTGGGC 59.615 55.000 0.00 0.00 0.00 5.36
2734 3041 1.676006 GACTGAAAACTGGTGTGTGGG 59.324 52.381 0.00 0.00 0.00 4.61
2735 3042 2.097466 GTGACTGAAAACTGGTGTGTGG 59.903 50.000 0.00 0.00 0.00 4.17
2736 3043 2.223021 CGTGACTGAAAACTGGTGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
2737 3044 2.006888 CGTGACTGAAAACTGGTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
2738 3045 1.268032 GCGTGACTGAAAACTGGTGTG 60.268 52.381 0.00 0.00 0.00 3.82
2739 3046 1.014352 GCGTGACTGAAAACTGGTGT 58.986 50.000 0.00 0.00 0.00 4.16
2740 3047 1.013596 TGCGTGACTGAAAACTGGTG 58.986 50.000 0.00 0.00 0.00 4.17
2741 3048 1.014352 GTGCGTGACTGAAAACTGGT 58.986 50.000 0.00 0.00 0.00 4.00
2742 3049 1.013596 TGTGCGTGACTGAAAACTGG 58.986 50.000 0.00 0.00 0.00 4.00
2743 3050 2.539547 CCTTGTGCGTGACTGAAAACTG 60.540 50.000 0.00 0.00 0.00 3.16
2744 3051 1.670811 CCTTGTGCGTGACTGAAAACT 59.329 47.619 0.00 0.00 0.00 2.66
2745 3052 1.268539 CCCTTGTGCGTGACTGAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
2746 3053 1.021202 CCCTTGTGCGTGACTGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
2747 3054 1.444119 GCCCTTGTGCGTGACTGAAA 61.444 55.000 0.00 0.00 0.00 2.69
2748 3055 1.891919 GCCCTTGTGCGTGACTGAA 60.892 57.895 0.00 0.00 0.00 3.02
2749 3056 2.280797 GCCCTTGTGCGTGACTGA 60.281 61.111 0.00 0.00 0.00 3.41
2750 3057 2.281070 AGCCCTTGTGCGTGACTG 60.281 61.111 0.00 0.00 36.02 3.51
2751 3058 2.281070 CAGCCCTTGTGCGTGACT 60.281 61.111 0.00 0.00 36.02 3.41
2752 3059 3.357079 CCAGCCCTTGTGCGTGAC 61.357 66.667 0.00 0.00 36.02 3.67
2753 3060 3.872603 ACCAGCCCTTGTGCGTGA 61.873 61.111 0.00 0.00 36.02 4.35
2754 3061 3.663176 CACCAGCCCTTGTGCGTG 61.663 66.667 0.00 0.00 36.02 5.34
2755 3062 4.189580 ACACCAGCCCTTGTGCGT 62.190 61.111 0.00 0.00 35.90 5.24
2756 3063 3.663176 CACACCAGCCCTTGTGCG 61.663 66.667 0.00 0.00 36.95 5.34
2757 3064 2.519302 ACACACCAGCCCTTGTGC 60.519 61.111 8.66 0.00 45.92 4.57
2759 3066 2.195683 CCACACACCAGCCCTTGT 59.804 61.111 0.00 0.00 0.00 3.16
2760 3067 2.598394 CCCACACACCAGCCCTTG 60.598 66.667 0.00 0.00 0.00 3.61
2761 3068 4.603535 GCCCACACACCAGCCCTT 62.604 66.667 0.00 0.00 0.00 3.95
2765 3072 3.216292 AAACGCCCACACACCAGC 61.216 61.111 0.00 0.00 0.00 4.85
2766 3073 2.721231 CAAACGCCCACACACCAG 59.279 61.111 0.00 0.00 0.00 4.00
2767 3074 3.522731 GCAAACGCCCACACACCA 61.523 61.111 0.00 0.00 0.00 4.17
2768 3075 4.279043 GGCAAACGCCCACACACC 62.279 66.667 0.00 0.00 44.46 4.16
2783 3090 3.127533 GTGTGTGGGCGAGATGGC 61.128 66.667 0.00 0.00 43.88 4.40
2784 3091 2.436646 GGTGTGTGGGCGAGATGG 60.437 66.667 0.00 0.00 0.00 3.51
2785 3092 2.436646 GGGTGTGTGGGCGAGATG 60.437 66.667 0.00 0.00 0.00 2.90
2786 3093 4.082523 CGGGTGTGTGGGCGAGAT 62.083 66.667 0.00 0.00 0.00 2.75
2793 3100 4.394712 GAGGAGGCGGGTGTGTGG 62.395 72.222 0.00 0.00 0.00 4.17
2794 3101 3.302347 GAGAGGAGGCGGGTGTGTG 62.302 68.421 0.00 0.00 0.00 3.82
2795 3102 2.997897 GAGAGGAGGCGGGTGTGT 60.998 66.667 0.00 0.00 0.00 3.72
2796 3103 3.775654 GGAGAGGAGGCGGGTGTG 61.776 72.222 0.00 0.00 0.00 3.82
2801 3108 3.775654 GTGTGGGAGAGGAGGCGG 61.776 72.222 0.00 0.00 0.00 6.13
2802 3109 2.681778 AGTGTGGGAGAGGAGGCG 60.682 66.667 0.00 0.00 0.00 5.52
2803 3110 1.194781 TTGAGTGTGGGAGAGGAGGC 61.195 60.000 0.00 0.00 0.00 4.70
2804 3111 0.901124 CTTGAGTGTGGGAGAGGAGG 59.099 60.000 0.00 0.00 0.00 4.30
2805 3112 0.248843 GCTTGAGTGTGGGAGAGGAG 59.751 60.000 0.00 0.00 0.00 3.69
2806 3113 0.178921 AGCTTGAGTGTGGGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2807 3114 0.036577 CAGCTTGAGTGTGGGAGAGG 60.037 60.000 0.00 0.00 0.00 3.69
2808 3115 0.673022 GCAGCTTGAGTGTGGGAGAG 60.673 60.000 0.00 0.00 0.00 3.20
2809 3116 1.372683 GCAGCTTGAGTGTGGGAGA 59.627 57.895 0.00 0.00 0.00 3.71
2810 3117 1.673665 GGCAGCTTGAGTGTGGGAG 60.674 63.158 0.00 0.00 0.00 4.30
2811 3118 2.401699 CTGGCAGCTTGAGTGTGGGA 62.402 60.000 0.00 0.00 0.00 4.37
2812 3119 1.970114 CTGGCAGCTTGAGTGTGGG 60.970 63.158 0.00 0.00 0.00 4.61
2813 3120 0.820891 AACTGGCAGCTTGAGTGTGG 60.821 55.000 15.89 0.00 0.00 4.17
2814 3121 0.309922 CAACTGGCAGCTTGAGTGTG 59.690 55.000 15.89 0.00 0.00 3.82
2815 3122 1.450531 GCAACTGGCAGCTTGAGTGT 61.451 55.000 24.35 0.70 43.97 3.55
2816 3123 1.285023 GCAACTGGCAGCTTGAGTG 59.715 57.895 24.35 12.03 43.97 3.51
2817 3124 2.629424 TGGCAACTGGCAGCTTGAGT 62.629 55.000 24.35 2.03 46.12 3.41
2818 3125 1.900016 TGGCAACTGGCAGCTTGAG 60.900 57.895 24.35 9.86 46.12 3.02
2819 3126 2.195411 TGGCAACTGGCAGCTTGA 59.805 55.556 24.35 9.33 46.12 3.02
2826 3133 1.300853 AAAACGCATGGCAACTGGC 60.301 52.632 0.00 0.00 43.74 4.85
2827 3134 1.559149 GCAAAACGCATGGCAACTGG 61.559 55.000 0.00 0.00 41.79 4.00
2828 3135 1.854664 GCAAAACGCATGGCAACTG 59.145 52.632 0.00 0.00 41.79 3.16
2829 3136 4.341827 GCAAAACGCATGGCAACT 57.658 50.000 0.00 0.00 41.79 3.16
2838 3145 1.685302 CCATGTACACTGCAAAACGC 58.315 50.000 0.00 0.00 42.89 4.84
2839 3146 1.001924 TGCCATGTACACTGCAAAACG 60.002 47.619 16.42 0.00 0.00 3.60
2840 3147 2.791383 TGCCATGTACACTGCAAAAC 57.209 45.000 16.42 0.00 0.00 2.43
2841 3148 2.692557 AGTTGCCATGTACACTGCAAAA 59.307 40.909 26.49 10.76 44.44 2.44
2842 3149 2.034432 CAGTTGCCATGTACACTGCAAA 59.966 45.455 26.49 13.82 44.44 3.68
2843 3150 1.608109 CAGTTGCCATGTACACTGCAA 59.392 47.619 23.00 23.00 41.08 4.08
2844 3151 1.237533 CAGTTGCCATGTACACTGCA 58.762 50.000 15.16 15.16 0.00 4.41
2845 3152 0.109597 GCAGTTGCCATGTACACTGC 60.110 55.000 18.99 18.99 42.64 4.40
2857 3164 1.001378 CAAACACACTAGGGCAGTTGC 60.001 52.381 4.37 0.00 34.26 4.17
2858 3165 1.001378 GCAAACACACTAGGGCAGTTG 60.001 52.381 4.37 1.64 34.26 3.16
2859 3166 1.318576 GCAAACACACTAGGGCAGTT 58.681 50.000 0.00 0.00 34.26 3.16
2860 3167 0.182537 TGCAAACACACTAGGGCAGT 59.817 50.000 0.00 0.00 38.32 4.40
2861 3168 1.267806 CTTGCAAACACACTAGGGCAG 59.732 52.381 0.00 0.00 32.31 4.85
2862 3169 1.317613 CTTGCAAACACACTAGGGCA 58.682 50.000 0.00 0.00 0.00 5.36
2863 3170 0.039165 GCTTGCAAACACACTAGGGC 60.039 55.000 0.00 0.00 0.00 5.19
2864 3171 1.267806 CTGCTTGCAAACACACTAGGG 59.732 52.381 0.00 0.00 0.00 3.53
2865 3172 2.221169 TCTGCTTGCAAACACACTAGG 58.779 47.619 0.00 0.00 0.00 3.02
2866 3173 3.365666 CCATCTGCTTGCAAACACACTAG 60.366 47.826 0.00 0.00 0.00 2.57
2867 3174 2.553602 CCATCTGCTTGCAAACACACTA 59.446 45.455 0.00 0.00 0.00 2.74
2868 3175 1.338973 CCATCTGCTTGCAAACACACT 59.661 47.619 0.00 0.00 0.00 3.55
2869 3176 1.774639 CCATCTGCTTGCAAACACAC 58.225 50.000 0.00 0.00 0.00 3.82
2870 3177 0.032403 GCCATCTGCTTGCAAACACA 59.968 50.000 0.00 0.00 36.87 3.72
2871 3178 0.032403 TGCCATCTGCTTGCAAACAC 59.968 50.000 0.00 0.00 42.00 3.32
2872 3179 0.751452 TTGCCATCTGCTTGCAAACA 59.249 45.000 0.00 0.43 41.63 2.83
2873 3180 1.142474 GTTGCCATCTGCTTGCAAAC 58.858 50.000 0.00 0.00 45.59 2.93
2874 3181 1.000060 GAGTTGCCATCTGCTTGCAAA 60.000 47.619 0.00 0.00 45.59 3.68
2875 3182 0.599558 GAGTTGCCATCTGCTTGCAA 59.400 50.000 0.00 0.00 42.28 4.08
2876 3183 0.251033 AGAGTTGCCATCTGCTTGCA 60.251 50.000 0.00 0.00 42.00 4.08
2877 3184 0.450983 GAGAGTTGCCATCTGCTTGC 59.549 55.000 0.00 0.00 42.00 4.01
2878 3185 2.110901 AGAGAGTTGCCATCTGCTTG 57.889 50.000 0.00 0.00 42.00 4.01
2879 3186 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
2880 3187 2.875094 AAAGAGAGTTGCCATCTGCT 57.125 45.000 0.00 0.00 42.00 4.24
2881 3188 3.930634 AAAAAGAGAGTTGCCATCTGC 57.069 42.857 0.00 0.00 41.77 4.26
2900 3207 4.498345 GCAACTGACATGTTCGGGTAAAAA 60.498 41.667 0.00 0.00 34.44 1.94
2901 3208 3.003897 GCAACTGACATGTTCGGGTAAAA 59.996 43.478 0.00 0.00 34.44 1.52
2902 3209 2.550606 GCAACTGACATGTTCGGGTAAA 59.449 45.455 0.00 0.00 34.44 2.01
2903 3210 2.147958 GCAACTGACATGTTCGGGTAA 58.852 47.619 0.00 0.00 34.44 2.85
2904 3211 1.609580 GGCAACTGACATGTTCGGGTA 60.610 52.381 0.00 0.00 34.44 3.69
2905 3212 0.889186 GGCAACTGACATGTTCGGGT 60.889 55.000 0.00 0.00 34.44 5.28
2906 3213 0.888736 TGGCAACTGACATGTTCGGG 60.889 55.000 0.00 0.00 34.44 5.14
2907 3214 1.167851 ATGGCAACTGACATGTTCGG 58.832 50.000 0.00 1.09 43.38 4.30
2908 3215 3.374988 ACATATGGCAACTGACATGTTCG 59.625 43.478 8.36 0.00 44.95 3.95
2909 3216 4.970662 ACATATGGCAACTGACATGTTC 57.029 40.909 8.36 0.00 44.95 3.18
2910 3217 5.726980 AAACATATGGCAACTGACATGTT 57.273 34.783 8.36 3.67 44.95 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.