Multiple sequence alignment - TraesCS6D01G121800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G121800 chr6D 100.000 3892 0 0 1 3892 86609372 86605481 0.000000e+00 7188.0
1 TraesCS6D01G121800 chr6D 100.000 2025 0 0 4212 6236 86605161 86603137 0.000000e+00 3740.0
2 TraesCS6D01G121800 chr6A 94.253 2036 85 18 4212 6236 104116674 104114660 0.000000e+00 3083.0
3 TraesCS6D01G121800 chr6A 92.393 2064 99 24 1 2019 104120428 104118378 0.000000e+00 2889.0
4 TraesCS6D01G121800 chr6A 90.214 746 54 8 3146 3887 104117491 104116761 0.000000e+00 955.0
5 TraesCS6D01G121800 chr6A 90.928 474 37 5 2063 2533 104118365 104117895 3.170000e-177 632.0
6 TraesCS6D01G121800 chr6B 93.442 2028 94 12 4216 6230 164037592 164035591 0.000000e+00 2972.0
7 TraesCS6D01G121800 chr6B 92.219 1555 81 26 782 2318 164041480 164039948 0.000000e+00 2165.0
8 TraesCS6D01G121800 chr6B 92.874 856 57 3 2958 3811 164039482 164038629 0.000000e+00 1240.0
9 TraesCS6D01G121800 chr6B 95.082 244 11 1 2268 2510 164039947 164039704 3.530000e-102 383.0
10 TraesCS6D01G121800 chr6B 100.000 72 0 0 726 797 164041573 164041502 3.920000e-27 134.0
11 TraesCS6D01G121800 chr7D 82.199 573 67 15 162 709 553355838 553355276 1.580000e-125 460.0
12 TraesCS6D01G121800 chr7D 98.795 249 3 0 2528 2776 510610227 510609979 1.600000e-120 444.0
13 TraesCS6D01G121800 chr7D 100.000 33 0 0 677 709 635522967 635522935 1.880000e-05 62.1
14 TraesCS6D01G121800 chr5A 99.598 249 1 0 2528 2776 630123838 630124086 7.370000e-124 455.0
15 TraesCS6D01G121800 chr5A 98.795 249 3 0 2528 2776 611029649 611029897 1.600000e-120 444.0
16 TraesCS6D01G121800 chr5D 98.450 258 3 1 2528 2785 352931906 352931650 2.650000e-123 453.0
17 TraesCS6D01G121800 chr5D 100.000 33 0 0 677 709 301100366 301100334 1.880000e-05 62.1
18 TraesCS6D01G121800 chr4D 98.406 251 4 0 2528 2778 43651649 43651399 5.740000e-120 442.0
19 TraesCS6D01G121800 chr4D 95.349 43 2 0 2046 2088 268071218 268071260 1.120000e-07 69.4
20 TraesCS6D01G121800 chr4D 95.238 42 2 0 2047 2088 43061867 43061908 4.030000e-07 67.6
21 TraesCS6D01G121800 chr4D 93.478 46 2 1 2047 2092 268071703 268071659 4.030000e-07 67.6
22 TraesCS6D01G121800 chr2A 98.016 252 5 0 2528 2779 597847872 597848123 7.420000e-119 438.0
23 TraesCS6D01G121800 chr2A 93.478 46 2 1 2047 2092 581964060 581964104 4.030000e-07 67.6
24 TraesCS6D01G121800 chr2A 88.636 44 5 0 661 704 11239734 11239777 3.000000e-03 54.7
25 TraesCS6D01G121800 chr7A 97.638 254 6 0 2528 2781 616469940 616469687 2.670000e-118 436.0
26 TraesCS6D01G121800 chr7A 98.008 251 5 0 2528 2778 693212788 693213038 2.670000e-118 436.0
27 TraesCS6D01G121800 chr3A 97.276 257 5 2 2528 2784 140004340 140004594 9.600000e-118 435.0
28 TraesCS6D01G121800 chr3A 84.536 97 15 0 19 115 275305240 275305144 5.150000e-16 97.1
29 TraesCS6D01G121800 chr3D 87.179 78 9 1 10 87 210618606 210618682 3.100000e-13 87.9
30 TraesCS6D01G121800 chr3D 97.059 34 1 0 1986 2019 567408807 567408774 2.430000e-04 58.4
31 TraesCS6D01G121800 chr1B 76.875 160 31 3 554 713 554001640 554001487 1.110000e-12 86.1
32 TraesCS6D01G121800 chr1A 93.478 46 3 0 2046 2091 113536736 113536691 1.120000e-07 69.4
33 TraesCS6D01G121800 chr4B 93.023 43 3 0 2046 2088 61303623 61303665 5.220000e-06 63.9
34 TraesCS6D01G121800 chr4A 89.583 48 5 0 2044 2091 600618543 600618496 1.880000e-05 62.1
35 TraesCS6D01G121800 chr3B 97.143 35 1 0 675 709 243796601 243796567 6.750000e-05 60.2
36 TraesCS6D01G121800 chr3B 94.595 37 2 0 677 713 239252790 239252754 2.430000e-04 58.4
37 TraesCS6D01G121800 chr3B 94.737 38 1 1 677 714 242745999 242745963 2.430000e-04 58.4
38 TraesCS6D01G121800 chr1D 97.059 34 1 0 677 710 488959071 488959104 2.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G121800 chr6D 86603137 86609372 6235 True 5464.00 7188 100.0000 1 6236 2 chr6D.!!$R1 6235
1 TraesCS6D01G121800 chr6A 104114660 104120428 5768 True 1889.75 3083 91.9470 1 6236 4 chr6A.!!$R1 6235
2 TraesCS6D01G121800 chr6B 164035591 164041573 5982 True 1378.80 2972 94.7234 726 6230 5 chr6B.!!$R1 5504
3 TraesCS6D01G121800 chr7D 553355276 553355838 562 True 460.00 460 82.1990 162 709 1 chr7D.!!$R2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 386 0.386113 GGCGTCACTACTCCCTCATC 59.614 60.0 0.00 0.00 0.00 2.92 F
1682 1776 0.179150 GTGCTCGTAGGCTCAGACAG 60.179 60.0 0.00 0.00 0.00 3.51 F
2122 2230 0.100503 AGTGTTTGAGTTTGCCACGC 59.899 50.0 0.00 0.00 0.00 5.34 F
2775 2937 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.0 3.86 3.86 46.11 5.19 F
3452 3857 0.889994 GTGAATCCTGCACAATGGCA 59.110 50.0 0.00 0.00 42.53 4.92 F
3823 5191 1.075601 ATGGTGGGAAGGAGAAGCAA 58.924 50.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2119 1.340658 CTCCGATCCATATTGCGACG 58.659 55.000 0.00 0.0 0.00 5.12 R
2756 2918 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.0 46.91 3.86 R
3811 4221 0.322906 CCCAGGGTTGCTTCTCCTTC 60.323 60.000 0.00 0.0 0.00 3.46 R
3812 4222 1.770324 CCCAGGGTTGCTTCTCCTT 59.230 57.895 0.00 0.0 0.00 3.36 R
5076 6458 1.004440 GCAGGCCTCGTCAGAGTTT 60.004 57.895 0.00 0.0 42.86 2.66 R
5332 6715 1.683917 CCTGCAGTAGAGAAGCGGTAT 59.316 52.381 13.81 0.0 32.85 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.442062 GCAACTAGCCCATTATTGCAATTTTAT 59.558 33.333 18.75 6.42 44.01 1.40
79 80 6.639671 TTGCAATTTTATCACCGCAATAAC 57.360 33.333 0.00 0.00 34.66 1.89
90 91 2.224426 ACCGCAATAACTGGTCTGTTGA 60.224 45.455 3.94 0.00 0.00 3.18
113 114 2.492090 CTGGAGGACGAAGGCGAG 59.508 66.667 0.00 0.00 41.64 5.03
120 121 3.346631 GACGAAGGCGAGGCGGTAA 62.347 63.158 0.00 0.00 41.64 2.85
144 145 2.359354 CATCCCCGCAACACCGAA 60.359 61.111 0.00 0.00 0.00 4.30
156 157 2.202623 ACCGAACGAGAGATGCGC 60.203 61.111 0.00 0.00 0.00 6.09
356 386 0.386113 GGCGTCACTACTCCCTCATC 59.614 60.000 0.00 0.00 0.00 2.92
360 390 3.218453 CGTCACTACTCCCTCATCTGAT 58.782 50.000 0.00 0.00 0.00 2.90
508 553 7.769272 CAACATTAGCTTTGTTGGAAAAAGA 57.231 32.000 24.16 0.00 46.46 2.52
533 578 6.516739 AATCTACAACGAGATCTCTGTTGA 57.483 37.500 37.84 30.77 41.71 3.18
1334 1418 2.574222 CGATTAGAACGGACGCGGC 61.574 63.158 12.47 7.53 0.00 6.53
1347 1431 4.388499 GCGGCGGGTTTCCTCTGA 62.388 66.667 9.78 0.00 0.00 3.27
1372 1456 2.069273 AGTTTCGCTTTGGATCGTCTG 58.931 47.619 0.00 0.00 0.00 3.51
1377 1461 1.424493 GCTTTGGATCGTCTGCTCCG 61.424 60.000 0.00 0.00 32.87 4.63
1587 1673 2.945668 CCTTAGGCTAGCAATGGTTGTC 59.054 50.000 18.24 0.00 0.00 3.18
1590 1676 2.196595 AGGCTAGCAATGGTTGTCCTA 58.803 47.619 18.24 0.00 34.23 2.94
1591 1677 2.780010 AGGCTAGCAATGGTTGTCCTAT 59.220 45.455 18.24 0.00 34.23 2.57
1592 1678 2.880890 GGCTAGCAATGGTTGTCCTATG 59.119 50.000 18.24 0.00 34.23 2.23
1602 1692 3.655777 TGGTTGTCCTATGGTTCTCCTTT 59.344 43.478 0.00 0.00 32.78 3.11
1609 1699 5.069383 GTCCTATGGTTCTCCTTTAGAGGTC 59.931 48.000 0.00 0.00 43.97 3.85
1637 1727 6.331307 AGGGAGGAAGATTATAAAGTGATGCT 59.669 38.462 0.00 0.00 0.00 3.79
1651 1745 2.494870 GTGATGCTCAGGGAAATGCTTT 59.505 45.455 0.00 0.00 0.00 3.51
1677 1771 0.243907 GTTGAGTGCTCGTAGGCTCA 59.756 55.000 0.00 0.00 36.35 4.26
1678 1772 0.528017 TTGAGTGCTCGTAGGCTCAG 59.472 55.000 0.00 0.00 38.89 3.35
1682 1776 0.179150 GTGCTCGTAGGCTCAGACAG 60.179 60.000 0.00 0.00 0.00 3.51
1827 1928 3.812053 GGACAGATGCATTGTAGCCTTAG 59.188 47.826 0.00 0.00 0.00 2.18
1877 1978 7.088589 AGACTTCATTTCCGATTGTAATTGG 57.911 36.000 4.74 4.74 40.70 3.16
1919 2020 0.180171 TGTATTCCTCATGGCCCACG 59.820 55.000 0.00 0.00 0.00 4.94
1943 2044 8.440833 ACGCAGTTACAATAGTTTCTGATTAAC 58.559 33.333 0.00 0.00 37.78 2.01
1999 2105 2.502130 AGCTAGTTTTACTGCTCCCTCC 59.498 50.000 0.00 0.00 30.57 4.30
2013 2119 4.162320 TGCTCCCTCCGATCCATATTAATC 59.838 45.833 0.00 0.00 0.00 1.75
2019 2125 3.191791 TCCGATCCATATTAATCGTCGCA 59.808 43.478 12.91 0.00 42.41 5.10
2033 2139 1.714794 GTCGCAATATGGATCGGAGG 58.285 55.000 0.00 0.00 0.00 4.30
2036 2142 1.404717 CGCAATATGGATCGGAGGGAG 60.405 57.143 0.00 0.00 0.00 4.30
2041 2147 5.423015 CAATATGGATCGGAGGGAGTATTG 58.577 45.833 0.00 0.00 0.00 1.90
2042 2148 2.767644 TGGATCGGAGGGAGTATTGA 57.232 50.000 0.00 0.00 0.00 2.57
2065 2171 5.585500 TTGTTGTACTAAATCAGCGACAC 57.415 39.130 0.00 0.00 0.00 3.67
2081 2187 4.038763 AGCGACACTTAATATGGATCGGAA 59.961 41.667 0.00 0.00 0.00 4.30
2121 2229 2.559998 AAGTGTTTGAGTTTGCCACG 57.440 45.000 0.00 0.00 0.00 4.94
2122 2230 0.100503 AGTGTTTGAGTTTGCCACGC 59.899 50.000 0.00 0.00 0.00 5.34
2128 2236 1.008538 GAGTTTGCCACGCAGTTGG 60.009 57.895 0.00 0.00 41.61 3.77
2284 2393 5.557866 TGCTAGTTCCTTACCTTCTTTTCC 58.442 41.667 0.00 0.00 0.00 3.13
2295 2404 8.642432 CCTTACCTTCTTTTCCTTCATTTTCTT 58.358 33.333 0.00 0.00 0.00 2.52
2299 2408 8.977412 ACCTTCTTTTCCTTCATTTTCTTGTAA 58.023 29.630 0.00 0.00 0.00 2.41
2356 2516 7.665145 TGATTGAGTTCAGAAATGTGGATGTTA 59.335 33.333 0.00 0.00 0.00 2.41
2441 2602 9.246670 TCATATTTTCTGAGAATGAACACCAAT 57.753 29.630 0.00 0.00 0.00 3.16
2527 2689 5.710409 TTCCCTCATCCTTTACCCTTTAG 57.290 43.478 0.00 0.00 0.00 1.85
2528 2690 4.967871 TCCCTCATCCTTTACCCTTTAGA 58.032 43.478 0.00 0.00 0.00 2.10
2529 2691 4.969359 TCCCTCATCCTTTACCCTTTAGAG 59.031 45.833 0.00 0.00 0.00 2.43
2530 2692 4.969359 CCCTCATCCTTTACCCTTTAGAGA 59.031 45.833 0.00 0.00 0.00 3.10
2531 2693 5.608860 CCCTCATCCTTTACCCTTTAGAGAT 59.391 44.000 0.00 0.00 0.00 2.75
2532 2694 6.465035 CCCTCATCCTTTACCCTTTAGAGATG 60.465 46.154 0.00 0.00 32.94 2.90
2533 2695 6.327626 CCTCATCCTTTACCCTTTAGAGATGA 59.672 42.308 0.00 0.00 37.22 2.92
2534 2696 7.125792 TCATCCTTTACCCTTTAGAGATGAC 57.874 40.000 0.00 0.00 35.26 3.06
2535 2697 6.672218 TCATCCTTTACCCTTTAGAGATGACA 59.328 38.462 0.00 0.00 35.26 3.58
2537 2699 6.889198 TCCTTTACCCTTTAGAGATGACATG 58.111 40.000 0.00 0.00 0.00 3.21
2538 2700 6.443849 TCCTTTACCCTTTAGAGATGACATGT 59.556 38.462 0.00 0.00 0.00 3.21
2539 2701 7.622081 TCCTTTACCCTTTAGAGATGACATGTA 59.378 37.037 0.00 0.00 0.00 2.29
2540 2702 8.432805 CCTTTACCCTTTAGAGATGACATGTAT 58.567 37.037 0.00 0.00 0.00 2.29
2541 2703 9.482627 CTTTACCCTTTAGAGATGACATGTATC 57.517 37.037 0.00 2.87 0.00 2.24
2542 2704 8.783660 TTACCCTTTAGAGATGACATGTATCT 57.216 34.615 14.05 14.05 37.59 1.98
2543 2705 7.296628 ACCCTTTAGAGATGACATGTATCTC 57.703 40.000 23.71 23.71 46.95 2.75
2553 2715 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
2554 2716 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
2555 2717 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
2556 2718 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
2557 2719 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
2558 2720 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
2573 2735 7.747155 CTATGAGTAGGAATAGGAAACGAGA 57.253 40.000 0.00 0.00 0.00 4.04
2574 2736 8.343168 CTATGAGTAGGAATAGGAAACGAGAT 57.657 38.462 0.00 0.00 0.00 2.75
2575 2737 6.392625 TGAGTAGGAATAGGAAACGAGATG 57.607 41.667 0.00 0.00 0.00 2.90
2576 2738 5.892119 TGAGTAGGAATAGGAAACGAGATGT 59.108 40.000 0.00 0.00 0.00 3.06
2577 2739 6.039493 TGAGTAGGAATAGGAAACGAGATGTC 59.961 42.308 0.00 0.00 0.00 3.06
2578 2740 5.892119 AGTAGGAATAGGAAACGAGATGTCA 59.108 40.000 0.00 0.00 0.00 3.58
2579 2741 5.878406 AGGAATAGGAAACGAGATGTCAT 57.122 39.130 0.00 0.00 0.00 3.06
2580 2742 6.240549 AGGAATAGGAAACGAGATGTCATT 57.759 37.500 0.00 0.00 0.00 2.57
2581 2743 6.653989 AGGAATAGGAAACGAGATGTCATTT 58.346 36.000 0.00 0.00 0.00 2.32
2582 2744 6.540189 AGGAATAGGAAACGAGATGTCATTTG 59.460 38.462 0.00 0.00 0.00 2.32
2583 2745 6.238484 GGAATAGGAAACGAGATGTCATTTGG 60.238 42.308 0.00 0.00 0.00 3.28
2584 2746 4.021102 AGGAAACGAGATGTCATTTGGT 57.979 40.909 0.00 0.00 0.00 3.67
2585 2747 4.398319 AGGAAACGAGATGTCATTTGGTT 58.602 39.130 0.00 0.00 0.00 3.67
2586 2748 4.216257 AGGAAACGAGATGTCATTTGGTTG 59.784 41.667 4.80 0.00 0.00 3.77
2587 2749 4.215399 GGAAACGAGATGTCATTTGGTTGA 59.785 41.667 4.80 0.00 0.00 3.18
2588 2750 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
2604 2766 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
2605 2767 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
2606 2768 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
2607 2769 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
2608 2770 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
2619 2781 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
2620 2782 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
2621 2783 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
2622 2784 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
2623 2785 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
2624 2786 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
2625 2787 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
2626 2788 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
2627 2789 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
2628 2790 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
2629 2791 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
2630 2792 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
2633 2795 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
2634 2796 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
2635 2797 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
2649 2811 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
2650 2812 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
2652 2814 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
2653 2815 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
2654 2816 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
2655 2817 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
2656 2818 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
2657 2819 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
2658 2820 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
2659 2821 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
2660 2822 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
2661 2823 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
2699 2861 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
2700 2862 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
2701 2863 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
2702 2864 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
2703 2865 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
2704 2866 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
2705 2867 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
2706 2868 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
2707 2869 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
2708 2870 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
2709 2871 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
2710 2872 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
2711 2873 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
2712 2874 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
2713 2875 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
2714 2876 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
2749 2911 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
2750 2912 7.912778 ATCCTATCCTCTAGAATTCCTATGC 57.087 40.000 0.65 0.00 0.00 3.14
2751 2913 5.888724 TCCTATCCTCTAGAATTCCTATGCG 59.111 44.000 0.65 0.00 0.00 4.73
2752 2914 5.888724 CCTATCCTCTAGAATTCCTATGCGA 59.111 44.000 0.65 0.00 0.00 5.10
2753 2915 6.549364 CCTATCCTCTAGAATTCCTATGCGAT 59.451 42.308 0.65 0.00 0.00 4.58
2754 2916 6.865834 ATCCTCTAGAATTCCTATGCGATT 57.134 37.500 0.65 0.00 0.00 3.34
2755 2917 6.274157 TCCTCTAGAATTCCTATGCGATTC 57.726 41.667 0.65 0.00 0.00 2.52
2756 2918 5.186021 TCCTCTAGAATTCCTATGCGATTCC 59.814 44.000 0.65 0.00 31.70 3.01
2757 2919 5.186797 CCTCTAGAATTCCTATGCGATTCCT 59.813 44.000 0.65 0.00 31.70 3.36
2758 2920 6.274157 TCTAGAATTCCTATGCGATTCCTC 57.726 41.667 0.65 0.00 31.70 3.71
2759 2921 4.278975 AGAATTCCTATGCGATTCCTCC 57.721 45.455 0.65 0.00 31.70 4.30
2760 2922 3.648067 AGAATTCCTATGCGATTCCTCCA 59.352 43.478 0.65 0.00 31.70 3.86
2761 2923 4.103153 AGAATTCCTATGCGATTCCTCCAA 59.897 41.667 0.65 0.00 31.70 3.53
2762 2924 3.924114 TTCCTATGCGATTCCTCCAAA 57.076 42.857 0.00 0.00 0.00 3.28
2763 2925 3.194005 TCCTATGCGATTCCTCCAAAC 57.806 47.619 0.00 0.00 0.00 2.93
2764 2926 2.158813 TCCTATGCGATTCCTCCAAACC 60.159 50.000 0.00 0.00 0.00 3.27
2765 2927 2.421388 CCTATGCGATTCCTCCAAACCA 60.421 50.000 0.00 0.00 0.00 3.67
2766 2928 2.214376 ATGCGATTCCTCCAAACCAA 57.786 45.000 0.00 0.00 0.00 3.67
2767 2929 1.988293 TGCGATTCCTCCAAACCAAA 58.012 45.000 0.00 0.00 0.00 3.28
2768 2930 1.885887 TGCGATTCCTCCAAACCAAAG 59.114 47.619 0.00 0.00 0.00 2.77
2769 2931 1.202348 GCGATTCCTCCAAACCAAAGG 59.798 52.381 0.00 0.00 0.00 3.11
2770 2932 2.790433 CGATTCCTCCAAACCAAAGGA 58.210 47.619 0.00 0.00 37.42 3.36
2774 2936 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
2775 2937 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
2777 2939 1.783979 TCCAAACCAAAGGAGGCCTTA 59.216 47.619 6.77 0.00 43.92 2.69
2778 2940 2.381961 TCCAAACCAAAGGAGGCCTTAT 59.618 45.455 6.77 0.00 43.92 1.73
2779 2941 3.173151 CCAAACCAAAGGAGGCCTTATT 58.827 45.455 6.77 1.29 43.92 1.40
2780 2942 4.044825 TCCAAACCAAAGGAGGCCTTATTA 59.955 41.667 6.77 0.00 43.92 0.98
2781 2943 4.402474 CCAAACCAAAGGAGGCCTTATTAG 59.598 45.833 6.77 3.16 43.92 1.73
2782 2944 4.948062 AACCAAAGGAGGCCTTATTAGT 57.052 40.909 6.77 3.80 43.92 2.24
2783 2945 4.948062 ACCAAAGGAGGCCTTATTAGTT 57.052 40.909 6.77 0.00 43.92 2.24
2784 2946 4.600062 ACCAAAGGAGGCCTTATTAGTTG 58.400 43.478 6.77 6.16 43.92 3.16
2785 2947 3.954258 CCAAAGGAGGCCTTATTAGTTGG 59.046 47.826 6.77 11.56 43.92 3.77
2786 2948 4.569865 CCAAAGGAGGCCTTATTAGTTGGT 60.570 45.833 6.77 0.00 43.92 3.67
2787 2949 3.933861 AGGAGGCCTTATTAGTTGGTG 57.066 47.619 6.77 0.00 0.00 4.17
2788 2950 3.460825 AGGAGGCCTTATTAGTTGGTGA 58.539 45.455 6.77 0.00 0.00 4.02
2789 2951 3.456277 AGGAGGCCTTATTAGTTGGTGAG 59.544 47.826 6.77 0.00 0.00 3.51
2809 2971 6.206829 GGTGAGGTTTGTATCTGCTAGTTTTT 59.793 38.462 0.00 0.00 0.00 1.94
2812 2974 7.719633 TGAGGTTTGTATCTGCTAGTTTTTCTT 59.280 33.333 0.00 0.00 0.00 2.52
2826 2988 7.546316 GCTAGTTTTTCTTTTGTTTGGGTTGTA 59.454 33.333 0.00 0.00 0.00 2.41
2842 3165 1.557099 TGTATGCTCGGTCACCTCTT 58.443 50.000 0.00 0.00 0.00 2.85
2845 3168 0.904865 ATGCTCGGTCACCTCTTCCA 60.905 55.000 0.00 0.00 0.00 3.53
2848 3171 1.186200 CTCGGTCACCTCTTCCATGA 58.814 55.000 0.00 0.00 0.00 3.07
2852 3175 1.625818 GGTCACCTCTTCCATGACTGT 59.374 52.381 0.00 0.00 42.00 3.55
2853 3176 2.832129 GGTCACCTCTTCCATGACTGTA 59.168 50.000 0.00 0.00 42.00 2.74
2854 3177 3.260884 GGTCACCTCTTCCATGACTGTAA 59.739 47.826 0.00 0.00 42.00 2.41
2855 3178 4.080863 GGTCACCTCTTCCATGACTGTAAT 60.081 45.833 0.00 0.00 42.00 1.89
2856 3179 5.112686 GTCACCTCTTCCATGACTGTAATC 58.887 45.833 0.00 0.00 39.72 1.75
2861 3184 8.642432 CACCTCTTCCATGACTGTAATCTATTA 58.358 37.037 0.00 0.00 0.00 0.98
2863 3186 8.865090 CCTCTTCCATGACTGTAATCTATTACT 58.135 37.037 12.70 0.00 42.32 2.24
2864 3187 9.906660 CTCTTCCATGACTGTAATCTATTACTC 57.093 37.037 12.70 5.24 42.32 2.59
2865 3188 9.647918 TCTTCCATGACTGTAATCTATTACTCT 57.352 33.333 12.70 0.17 42.32 3.24
2872 3195 9.015367 TGACTGTAATCTATTACTCTATCTGGC 57.985 37.037 12.70 0.00 42.32 4.85
2873 3196 9.238368 GACTGTAATCTATTACTCTATCTGGCT 57.762 37.037 12.70 0.00 42.32 4.75
2874 3197 9.019656 ACTGTAATCTATTACTCTATCTGGCTG 57.980 37.037 12.70 0.00 42.32 4.85
2875 3198 8.941995 TGTAATCTATTACTCTATCTGGCTGT 57.058 34.615 12.70 0.00 42.32 4.40
2876 3199 9.368416 TGTAATCTATTACTCTATCTGGCTGTT 57.632 33.333 12.70 0.00 42.32 3.16
2897 3220 6.222389 TGTTATTTTTGGGCTCAATGTCTTG 58.778 36.000 0.00 0.00 32.28 3.02
2914 3237 6.522625 TGTCTTGATGGAAAAACAGTTCAA 57.477 33.333 0.00 0.00 0.00 2.69
2947 3277 2.433436 CCCTACCCGACCTTTCAAAAG 58.567 52.381 0.00 0.00 35.79 2.27
2982 3387 6.966021 TCTGTGTTGTTTAAACTATTGAGCC 58.034 36.000 18.72 0.22 0.00 4.70
3050 3455 1.596727 GAGATGCGCTAAAGGCAAGAG 59.403 52.381 9.73 0.00 44.66 2.85
3139 3544 7.765695 ATATACATTTGGTAGCCATGAAAGG 57.234 36.000 7.91 0.00 34.92 3.11
3196 3601 9.787532 AAATATGAATACAAAAGACACGAATGG 57.212 29.630 0.00 0.00 0.00 3.16
3202 3607 3.951680 ACAAAAGACACGAATGGGAAGTT 59.048 39.130 0.00 0.00 0.00 2.66
3409 3814 3.972133 TGATCCAAATGAGGAATGTGCT 58.028 40.909 0.00 0.00 41.92 4.40
3442 3847 2.740981 GACTTGAGTGCTGTGAATCCTG 59.259 50.000 0.00 0.00 0.00 3.86
3452 3857 0.889994 GTGAATCCTGCACAATGGCA 59.110 50.000 0.00 0.00 42.53 4.92
3519 3924 6.931838 TCTTATACGTGACTGGAATTCAACT 58.068 36.000 7.93 0.00 0.00 3.16
3535 3940 7.599998 GGAATTCAACTTGTGCAAATTGATACT 59.400 33.333 7.93 0.00 36.59 2.12
3604 4009 7.094805 CGTTATTTCTTTCATTCCTCTGTCCAA 60.095 37.037 0.00 0.00 0.00 3.53
3614 4019 2.305927 TCCTCTGTCCAAAGTCATTCCC 59.694 50.000 0.00 0.00 0.00 3.97
3662 4069 7.598759 ACTAGACTCTCTGGTCTTTTGTTAA 57.401 36.000 0.00 0.00 43.14 2.01
3663 4070 7.662897 ACTAGACTCTCTGGTCTTTTGTTAAG 58.337 38.462 0.00 0.00 43.14 1.85
3772 4182 1.450312 GGTCGATGCCCAGTTCCTG 60.450 63.158 0.00 0.00 0.00 3.86
3811 4221 4.261155 CGATATGTTTGTAGCAATGGTGGG 60.261 45.833 0.00 0.00 0.00 4.61
3812 4222 2.666272 TGTTTGTAGCAATGGTGGGA 57.334 45.000 0.00 0.00 0.00 4.37
3815 5183 2.214376 TTGTAGCAATGGTGGGAAGG 57.786 50.000 0.00 0.00 0.00 3.46
3823 5191 1.075601 ATGGTGGGAAGGAGAAGCAA 58.924 50.000 0.00 0.00 0.00 3.91
3858 5226 6.655425 AGGTAAGAAACAGCAGAAATAGGAAC 59.345 38.462 0.00 0.00 0.00 3.62
3876 5244 3.683340 GGAACGGATAAAGACCAGTGAAC 59.317 47.826 0.00 0.00 0.00 3.18
3887 5255 2.036089 GACCAGTGAACGAGAAGAAGGT 59.964 50.000 0.00 0.00 0.00 3.50
3888 5256 2.434702 ACCAGTGAACGAGAAGAAGGTT 59.565 45.455 0.00 0.00 0.00 3.50
4273 5646 6.780031 TGAATGAGTGGTATTTTGGAAAAGGA 59.220 34.615 0.00 0.00 0.00 3.36
4307 5680 8.671384 TTAGTGGTATAAGATCAATTTTCCCG 57.329 34.615 0.00 0.00 0.00 5.14
4330 5704 6.311935 CCGTAACTTAAGTGCAGCACTAATAA 59.688 38.462 28.48 21.07 44.62 1.40
4398 5772 8.393395 ACGTCAATGAAAATAATATTGTGTGC 57.607 30.769 0.00 0.00 34.35 4.57
4402 5776 7.980662 TCAATGAAAATAATATTGTGTGCCTGG 59.019 33.333 0.00 0.00 34.35 4.45
4624 6002 2.982744 GCGAAAGGCTCAACCCAGC 61.983 63.158 0.00 0.00 40.58 4.85
4655 6033 7.149307 GGAGCTATATTTCTTCGTCTTAGCTT 58.851 38.462 0.00 0.00 40.56 3.74
4737 6119 3.084039 TGATGCCCTTGAAGATGTTGAC 58.916 45.455 0.00 0.00 0.00 3.18
4742 6124 3.259123 GCCCTTGAAGATGTTGACCATTT 59.741 43.478 0.00 0.00 32.56 2.32
4745 6127 5.244626 CCCTTGAAGATGTTGACCATTTCTT 59.755 40.000 0.00 0.00 32.56 2.52
4843 6225 4.706842 TTTCACCTTTCCTAGTTCTGCT 57.293 40.909 0.00 0.00 0.00 4.24
4971 6353 3.079478 AGATCGCAGCCTGCTCCA 61.079 61.111 15.80 0.00 42.25 3.86
5072 6454 1.746517 GTTCTGACCCTGTCACGGT 59.253 57.895 0.00 0.00 37.67 4.83
5076 6458 0.677288 CTGACCCTGTCACGGTGTTA 59.323 55.000 8.17 0.00 37.67 2.41
5085 6467 3.450578 TGTCACGGTGTTAAACTCTGAC 58.549 45.455 8.17 0.00 0.00 3.51
5209 6591 1.151668 GTCACGCAAAGATGAGCACT 58.848 50.000 0.00 0.00 0.00 4.40
5332 6715 1.002087 GAACCTGCTCTCTTTTCCGGA 59.998 52.381 0.00 0.00 0.00 5.14
5480 6863 3.181427 ACCTTTTTGCTGGTGGTATGGTA 60.181 43.478 0.00 0.00 34.90 3.25
5748 7132 8.463607 TCGGTTTCTGTTTCAGTTTCTTTTTAT 58.536 29.630 0.00 0.00 32.61 1.40
5790 7174 6.428385 AGATTGTTGCTAGCAGTAAACATC 57.572 37.500 18.45 16.12 0.00 3.06
5792 7176 5.611796 TTGTTGCTAGCAGTAAACATCTG 57.388 39.130 18.45 0.00 36.18 2.90
5915 7299 2.048127 ACTCGAAGGCAACGGAGC 60.048 61.111 3.84 0.00 46.39 4.70
5916 7300 2.262915 CTCGAAGGCAACGGAGCT 59.737 61.111 0.00 0.00 46.39 4.09
5917 7301 1.807573 CTCGAAGGCAACGGAGCTC 60.808 63.158 4.71 4.71 46.39 4.09
5918 7302 2.219325 CTCGAAGGCAACGGAGCTCT 62.219 60.000 14.64 0.00 46.39 4.09
5919 7303 0.963856 TCGAAGGCAACGGAGCTCTA 60.964 55.000 14.64 0.00 46.39 2.43
5920 7304 0.103208 CGAAGGCAACGGAGCTCTAT 59.897 55.000 14.64 0.00 46.39 1.98
5934 7318 4.258543 GAGCTCTATATAGACCGACAGCT 58.741 47.826 17.29 17.29 31.63 4.24
5938 7322 4.841422 TCTATATAGACCGACAGCTACCC 58.159 47.826 8.44 0.00 0.00 3.69
6020 7404 2.294512 CCAAGTGGCCAGTCTTCTTTTC 59.705 50.000 15.03 0.00 0.00 2.29
6021 7405 3.217626 CAAGTGGCCAGTCTTCTTTTCT 58.782 45.455 15.03 0.00 0.00 2.52
6074 7458 7.536895 TGTTCAACAATTTTCTCACCAAATG 57.463 32.000 0.00 0.00 0.00 2.32
6137 7521 1.379576 GATGGCCAGAAAGCTGCCT 60.380 57.895 13.05 0.00 40.91 4.75
6150 7538 2.659428 AGCTGCCTGTCTTCAAAGTTT 58.341 42.857 0.00 0.00 0.00 2.66
6156 7544 5.167845 TGCCTGTCTTCAAAGTTTCAAAAC 58.832 37.500 0.00 0.00 39.17 2.43
6158 7546 5.109210 CCTGTCTTCAAAGTTTCAAAACCC 58.891 41.667 2.08 0.00 39.71 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.283101 TGGTGGCCCATGAAGCAC 60.283 61.111 0.00 6.07 35.17 4.40
67 68 1.346395 ACAGACCAGTTATTGCGGTGA 59.654 47.619 0.00 0.00 31.63 4.02
90 91 0.905337 CCTTCGTCCTCCAGGGTCTT 60.905 60.000 0.00 0.00 36.25 3.01
97 98 3.068691 CCTCGCCTTCGTCCTCCA 61.069 66.667 0.00 0.00 36.96 3.86
98 99 4.516195 GCCTCGCCTTCGTCCTCC 62.516 72.222 0.00 0.00 36.96 4.30
113 114 1.227176 GGATGAGGACGTTACCGCC 60.227 63.158 0.00 0.00 37.70 6.13
120 121 3.000819 TTGCGGGGATGAGGACGT 61.001 61.111 0.00 0.00 0.00 4.34
122 123 1.745489 GTGTTGCGGGGATGAGGAC 60.745 63.158 0.00 0.00 0.00 3.85
198 218 2.394604 GCAAAGGCCATCGTACTCC 58.605 57.895 5.01 0.00 0.00 3.85
356 386 1.154131 CGCCGCGATCTCCTATCAG 60.154 63.158 8.23 0.00 0.00 2.90
360 390 1.068748 GTTATTCGCCGCGATCTCCTA 60.069 52.381 17.62 0.00 35.23 2.94
495 540 8.244802 TCGTTGTAGATTTTCTTTTTCCAACAA 58.755 29.630 0.00 0.00 32.19 2.83
507 552 7.542477 TCAACAGAGATCTCGTTGTAGATTTTC 59.458 37.037 33.83 9.42 40.90 2.29
508 553 7.378966 TCAACAGAGATCTCGTTGTAGATTTT 58.621 34.615 33.83 14.85 40.90 1.82
592 637 2.406130 CGCTTGGACATTTGCAATTGT 58.594 42.857 23.16 23.16 31.84 2.71
722 767 8.410912 CCTGTATTTATTTAGCTGTTTTACCCC 58.589 37.037 0.00 0.00 0.00 4.95
1302 1386 1.789464 CTAATCGCGTGATCAAGCCTC 59.211 52.381 24.91 1.74 32.24 4.70
1307 1391 2.159352 TCCGTTCTAATCGCGTGATCAA 60.159 45.455 12.67 2.90 32.24 2.57
1334 1418 3.059352 ACTGAAATCAGAGGAAACCCG 57.941 47.619 16.93 0.00 46.59 5.28
1341 1425 4.470462 CAAAGCGAAACTGAAATCAGAGG 58.530 43.478 16.93 4.41 46.59 3.69
1347 1431 3.502211 ACGATCCAAAGCGAAACTGAAAT 59.498 39.130 0.00 0.00 37.81 2.17
1372 1456 2.960129 CGGATTACGCCACGGAGC 60.960 66.667 0.00 0.00 34.82 4.70
1405 1489 1.971695 CCCCTGTTTTGTCGCTCCC 60.972 63.158 0.00 0.00 0.00 4.30
1587 1673 4.962995 TGACCTCTAAAGGAGAACCATAGG 59.037 45.833 0.00 0.00 46.67 2.57
1590 1676 5.810095 CTTTGACCTCTAAAGGAGAACCAT 58.190 41.667 0.00 0.00 46.67 3.55
1591 1677 5.228945 CTTTGACCTCTAAAGGAGAACCA 57.771 43.478 0.00 0.00 46.67 3.67
1602 1692 3.847042 TCTTCCTCCCTTTGACCTCTA 57.153 47.619 0.00 0.00 0.00 2.43
1609 1699 8.844244 CATCACTTTATAATCTTCCTCCCTTTG 58.156 37.037 0.00 0.00 0.00 2.77
1677 1771 4.865905 ACTGATAGGTGTGAGATCTGTCT 58.134 43.478 0.00 0.00 37.42 3.41
1678 1772 6.892658 ATACTGATAGGTGTGAGATCTGTC 57.107 41.667 0.00 0.00 34.69 3.51
1682 1776 8.200792 AGTTGAAATACTGATAGGTGTGAGATC 58.799 37.037 0.00 0.00 0.00 2.75
1827 1928 5.851047 CAAGGATTGCCAAAACAGATTTC 57.149 39.130 0.00 0.00 40.39 2.17
1877 1978 2.613595 TCGAATCTACATTGTGGCATGC 59.386 45.455 9.90 9.90 0.00 4.06
1991 2097 4.698575 GATTAATATGGATCGGAGGGAGC 58.301 47.826 0.00 0.00 0.00 4.70
2013 2119 1.340658 CTCCGATCCATATTGCGACG 58.659 55.000 0.00 0.00 0.00 5.12
2019 2125 5.342017 TCAATACTCCCTCCGATCCATATT 58.658 41.667 0.00 0.00 0.00 1.28
2036 2142 8.600625 TCGCTGATTTAGTACAACAATCAATAC 58.399 33.333 12.70 7.09 36.67 1.89
2041 2147 6.090898 AGTGTCGCTGATTTAGTACAACAATC 59.909 38.462 0.00 0.38 0.00 2.67
2042 2148 5.932303 AGTGTCGCTGATTTAGTACAACAAT 59.068 36.000 0.00 0.00 0.00 2.71
2121 2229 5.024785 ACTAAATCTAGCTACCCAACTGC 57.975 43.478 0.00 0.00 0.00 4.40
2122 2230 9.614792 AAATTACTAAATCTAGCTACCCAACTG 57.385 33.333 0.00 0.00 0.00 3.16
2284 2393 9.586435 GTTCCCCATTATTACAAGAAAATGAAG 57.414 33.333 0.00 0.00 32.29 3.02
2356 2516 8.227507 ACATAAATATTAAATGGCAGGTCTCCT 58.772 33.333 12.78 0.00 0.00 3.69
2517 2679 8.783660 AGATACATGTCATCTCTAAAGGGTAA 57.216 34.615 0.00 0.00 0.00 2.85
2520 2682 7.295322 TGAGATACATGTCATCTCTAAAGGG 57.705 40.000 27.27 0.00 45.75 3.95
2527 2689 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2528 2690 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
2529 2691 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
2530 2692 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
2531 2693 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
2532 2694 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
2549 2711 7.747155 TCTCGTTTCCTATTCCTACTCATAG 57.253 40.000 0.00 0.00 0.00 2.23
2550 2712 7.724506 ACATCTCGTTTCCTATTCCTACTCATA 59.275 37.037 0.00 0.00 0.00 2.15
2551 2713 6.551601 ACATCTCGTTTCCTATTCCTACTCAT 59.448 38.462 0.00 0.00 0.00 2.90
2552 2714 5.892119 ACATCTCGTTTCCTATTCCTACTCA 59.108 40.000 0.00 0.00 0.00 3.41
2553 2715 6.039493 TGACATCTCGTTTCCTATTCCTACTC 59.961 42.308 0.00 0.00 0.00 2.59
2554 2716 5.892119 TGACATCTCGTTTCCTATTCCTACT 59.108 40.000 0.00 0.00 0.00 2.57
2555 2717 6.145338 TGACATCTCGTTTCCTATTCCTAC 57.855 41.667 0.00 0.00 0.00 3.18
2556 2718 6.978674 ATGACATCTCGTTTCCTATTCCTA 57.021 37.500 0.00 0.00 0.00 2.94
2557 2719 5.878406 ATGACATCTCGTTTCCTATTCCT 57.122 39.130 0.00 0.00 0.00 3.36
2558 2720 6.238484 CCAAATGACATCTCGTTTCCTATTCC 60.238 42.308 0.00 0.00 33.97 3.01
2559 2721 6.316390 ACCAAATGACATCTCGTTTCCTATTC 59.684 38.462 0.00 0.00 33.97 1.75
2560 2722 6.180472 ACCAAATGACATCTCGTTTCCTATT 58.820 36.000 0.00 0.00 33.97 1.73
2561 2723 5.745227 ACCAAATGACATCTCGTTTCCTAT 58.255 37.500 0.00 0.00 33.97 2.57
2562 2724 5.160607 ACCAAATGACATCTCGTTTCCTA 57.839 39.130 0.00 0.00 33.97 2.94
2563 2725 4.021102 ACCAAATGACATCTCGTTTCCT 57.979 40.909 0.00 0.00 33.97 3.36
2564 2726 4.215399 TCAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
2565 2727 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
2582 2744 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
2583 2745 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
2594 2756 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
2595 2757 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
2596 2758 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
2597 2759 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
2598 2760 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
2599 2761 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
2600 2762 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
2609 2771 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
2623 2785 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
2624 2786 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
2627 2789 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
2628 2790 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
2629 2791 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
2630 2792 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
2631 2793 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
2632 2794 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
2633 2795 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
2634 2796 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
2635 2797 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
2636 2798 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
2637 2799 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
2638 2800 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
2639 2801 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
2640 2802 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
2641 2803 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
2642 2804 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
2676 2838 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
2677 2839 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
2678 2840 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
2679 2841 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
2680 2842 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
2681 2843 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
2682 2844 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
2683 2845 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
2684 2846 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
2685 2847 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
2686 2848 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
2687 2849 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
2688 2850 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
2689 2851 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
2690 2852 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
2691 2853 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
2692 2854 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
2723 2885 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
2724 2886 8.421002 GCATAGGAATTCTAGAGGATAGGATTC 58.579 40.741 5.23 7.20 38.32 2.52
2725 2887 7.069331 CGCATAGGAATTCTAGAGGATAGGATT 59.931 40.741 5.23 0.00 0.00 3.01
2726 2888 6.549364 CGCATAGGAATTCTAGAGGATAGGAT 59.451 42.308 5.23 0.00 0.00 3.24
2727 2889 5.888724 CGCATAGGAATTCTAGAGGATAGGA 59.111 44.000 5.23 0.00 0.00 2.94
2728 2890 5.888724 TCGCATAGGAATTCTAGAGGATAGG 59.111 44.000 5.23 0.00 0.00 2.57
2729 2891 7.581213 ATCGCATAGGAATTCTAGAGGATAG 57.419 40.000 5.23 0.00 0.00 2.08
2730 2892 7.068839 GGAATCGCATAGGAATTCTAGAGGATA 59.931 40.741 5.23 0.00 0.00 2.59
2731 2893 6.127196 GGAATCGCATAGGAATTCTAGAGGAT 60.127 42.308 5.23 0.00 0.00 3.24
2732 2894 5.186021 GGAATCGCATAGGAATTCTAGAGGA 59.814 44.000 5.23 0.00 0.00 3.71
2733 2895 5.186797 AGGAATCGCATAGGAATTCTAGAGG 59.813 44.000 5.23 0.00 0.00 3.69
2734 2896 6.279513 AGGAATCGCATAGGAATTCTAGAG 57.720 41.667 5.23 0.00 0.00 2.43
2735 2897 5.186021 GGAGGAATCGCATAGGAATTCTAGA 59.814 44.000 5.23 0.00 0.00 2.43
2736 2898 5.047021 TGGAGGAATCGCATAGGAATTCTAG 60.047 44.000 5.23 0.00 0.00 2.43
2737 2899 4.838423 TGGAGGAATCGCATAGGAATTCTA 59.162 41.667 5.23 0.00 0.00 2.10
2738 2900 3.648067 TGGAGGAATCGCATAGGAATTCT 59.352 43.478 5.23 0.00 0.00 2.40
2739 2901 4.008074 TGGAGGAATCGCATAGGAATTC 57.992 45.455 0.00 0.00 0.00 2.17
2740 2902 4.437682 TTGGAGGAATCGCATAGGAATT 57.562 40.909 0.00 0.00 0.00 2.17
2741 2903 4.137543 GTTTGGAGGAATCGCATAGGAAT 58.862 43.478 0.00 0.00 0.00 3.01
2742 2904 3.541632 GTTTGGAGGAATCGCATAGGAA 58.458 45.455 0.00 0.00 0.00 3.36
2743 2905 2.158813 GGTTTGGAGGAATCGCATAGGA 60.159 50.000 0.00 0.00 0.00 2.94
2744 2906 2.222027 GGTTTGGAGGAATCGCATAGG 58.778 52.381 0.00 0.00 0.00 2.57
2745 2907 2.917933 TGGTTTGGAGGAATCGCATAG 58.082 47.619 0.00 0.00 0.00 2.23
2746 2908 3.358111 TTGGTTTGGAGGAATCGCATA 57.642 42.857 0.00 0.00 0.00 3.14
2747 2909 2.214376 TTGGTTTGGAGGAATCGCAT 57.786 45.000 0.00 0.00 0.00 4.73
2748 2910 1.885887 CTTTGGTTTGGAGGAATCGCA 59.114 47.619 0.00 0.00 0.00 5.10
2749 2911 1.202348 CCTTTGGTTTGGAGGAATCGC 59.798 52.381 0.00 0.00 32.11 4.58
2750 2912 2.749621 CTCCTTTGGTTTGGAGGAATCG 59.250 50.000 0.00 0.00 44.44 3.34
2756 2918 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2757 2919 0.560688 AAGGCCTCCTTTGGTTTGGA 59.439 50.000 5.23 0.00 41.69 3.53
2758 2920 2.302587 TAAGGCCTCCTTTGGTTTGG 57.697 50.000 5.23 0.00 41.69 3.28
2759 2921 5.016831 ACTAATAAGGCCTCCTTTGGTTTG 58.983 41.667 5.23 0.00 41.69 2.93
2760 2922 5.270979 ACTAATAAGGCCTCCTTTGGTTT 57.729 39.130 5.23 0.00 41.69 3.27
2761 2923 4.948062 ACTAATAAGGCCTCCTTTGGTT 57.052 40.909 5.23 0.00 41.69 3.67
2762 2924 4.569865 CCAACTAATAAGGCCTCCTTTGGT 60.570 45.833 5.23 5.56 41.69 3.67
2763 2925 3.954258 CCAACTAATAAGGCCTCCTTTGG 59.046 47.826 5.23 9.79 41.69 3.28
2764 2926 4.399303 CACCAACTAATAAGGCCTCCTTTG 59.601 45.833 5.23 6.44 41.69 2.77
2765 2927 4.291249 TCACCAACTAATAAGGCCTCCTTT 59.709 41.667 5.23 2.51 41.69 3.11
2766 2928 3.850173 TCACCAACTAATAAGGCCTCCTT 59.150 43.478 5.23 5.23 46.63 3.36
2767 2929 3.456277 CTCACCAACTAATAAGGCCTCCT 59.544 47.826 5.23 0.00 33.87 3.69
2768 2930 3.433740 CCTCACCAACTAATAAGGCCTCC 60.434 52.174 5.23 0.00 0.00 4.30
2769 2931 3.200165 ACCTCACCAACTAATAAGGCCTC 59.800 47.826 5.23 0.00 0.00 4.70
2770 2932 3.190439 ACCTCACCAACTAATAAGGCCT 58.810 45.455 0.00 0.00 0.00 5.19
2771 2933 3.646736 ACCTCACCAACTAATAAGGCC 57.353 47.619 0.00 0.00 0.00 5.19
2772 2934 4.765339 ACAAACCTCACCAACTAATAAGGC 59.235 41.667 0.00 0.00 0.00 4.35
2773 2935 8.047310 AGATACAAACCTCACCAACTAATAAGG 58.953 37.037 0.00 0.00 0.00 2.69
2774 2936 8.883731 CAGATACAAACCTCACCAACTAATAAG 58.116 37.037 0.00 0.00 0.00 1.73
2775 2937 7.335924 GCAGATACAAACCTCACCAACTAATAA 59.664 37.037 0.00 0.00 0.00 1.40
2776 2938 6.821665 GCAGATACAAACCTCACCAACTAATA 59.178 38.462 0.00 0.00 0.00 0.98
2777 2939 5.648092 GCAGATACAAACCTCACCAACTAAT 59.352 40.000 0.00 0.00 0.00 1.73
2778 2940 5.001232 GCAGATACAAACCTCACCAACTAA 58.999 41.667 0.00 0.00 0.00 2.24
2779 2941 4.286032 AGCAGATACAAACCTCACCAACTA 59.714 41.667 0.00 0.00 0.00 2.24
2780 2942 3.073062 AGCAGATACAAACCTCACCAACT 59.927 43.478 0.00 0.00 0.00 3.16
2781 2943 3.412386 AGCAGATACAAACCTCACCAAC 58.588 45.455 0.00 0.00 0.00 3.77
2782 2944 3.788227 AGCAGATACAAACCTCACCAA 57.212 42.857 0.00 0.00 0.00 3.67
2783 2945 3.838317 ACTAGCAGATACAAACCTCACCA 59.162 43.478 0.00 0.00 0.00 4.17
2784 2946 4.473477 ACTAGCAGATACAAACCTCACC 57.527 45.455 0.00 0.00 0.00 4.02
2785 2947 6.803154 AAAACTAGCAGATACAAACCTCAC 57.197 37.500 0.00 0.00 0.00 3.51
2786 2948 7.224297 AGAAAAACTAGCAGATACAAACCTCA 58.776 34.615 0.00 0.00 0.00 3.86
2787 2949 7.674471 AGAAAAACTAGCAGATACAAACCTC 57.326 36.000 0.00 0.00 0.00 3.85
2788 2950 8.465273 AAAGAAAAACTAGCAGATACAAACCT 57.535 30.769 0.00 0.00 0.00 3.50
2789 2951 8.968242 CAAAAGAAAAACTAGCAGATACAAACC 58.032 33.333 0.00 0.00 0.00 3.27
2809 2971 4.261405 CGAGCATACAACCCAAACAAAAGA 60.261 41.667 0.00 0.00 0.00 2.52
2812 2974 2.294791 CCGAGCATACAACCCAAACAAA 59.705 45.455 0.00 0.00 0.00 2.83
2826 2988 0.904865 TGGAAGAGGTGACCGAGCAT 60.905 55.000 0.00 0.00 0.00 3.79
2848 3171 9.019656 CAGCCAGATAGAGTAATAGATTACAGT 57.980 37.037 13.48 4.19 43.83 3.55
2861 3184 5.888161 CCCAAAAATAACAGCCAGATAGAGT 59.112 40.000 0.00 0.00 0.00 3.24
2863 3186 4.644685 GCCCAAAAATAACAGCCAGATAGA 59.355 41.667 0.00 0.00 0.00 1.98
2864 3187 4.646492 AGCCCAAAAATAACAGCCAGATAG 59.354 41.667 0.00 0.00 0.00 2.08
2865 3188 4.609301 AGCCCAAAAATAACAGCCAGATA 58.391 39.130 0.00 0.00 0.00 1.98
2866 3189 3.444029 AGCCCAAAAATAACAGCCAGAT 58.556 40.909 0.00 0.00 0.00 2.90
2867 3190 2.825532 GAGCCCAAAAATAACAGCCAGA 59.174 45.455 0.00 0.00 0.00 3.86
2868 3191 2.562298 TGAGCCCAAAAATAACAGCCAG 59.438 45.455 0.00 0.00 0.00 4.85
2869 3192 2.603021 TGAGCCCAAAAATAACAGCCA 58.397 42.857 0.00 0.00 0.00 4.75
2870 3193 3.676291 TTGAGCCCAAAAATAACAGCC 57.324 42.857 0.00 0.00 0.00 4.85
2871 3194 4.568956 ACATTGAGCCCAAAAATAACAGC 58.431 39.130 0.00 0.00 35.67 4.40
2872 3195 6.029346 AGACATTGAGCCCAAAAATAACAG 57.971 37.500 0.00 0.00 35.67 3.16
2873 3196 6.041409 TCAAGACATTGAGCCCAAAAATAACA 59.959 34.615 0.00 0.00 40.54 2.41
2874 3197 6.454795 TCAAGACATTGAGCCCAAAAATAAC 58.545 36.000 0.00 0.00 40.54 1.89
2875 3198 6.662865 TCAAGACATTGAGCCCAAAAATAA 57.337 33.333 0.00 0.00 40.54 1.40
2897 3220 4.620982 CCCACTTGAACTGTTTTTCCATC 58.379 43.478 0.00 0.00 0.00 3.51
2926 3256 0.694196 TTTGAAAGGTCGGGTAGGGG 59.306 55.000 0.00 0.00 0.00 4.79
2930 3260 3.136992 ACCTTCTTTTGAAAGGTCGGGTA 59.863 43.478 1.73 0.00 36.14 3.69
2934 3264 3.625764 TCACACCTTCTTTTGAAAGGTCG 59.374 43.478 4.60 4.35 37.64 4.79
2947 3277 4.900635 AACAACACAGATTCACACCTTC 57.099 40.909 0.00 0.00 0.00 3.46
3019 3424 6.036517 CCTTTAGCGCATCTCCATATGATAAC 59.963 42.308 11.47 0.00 0.00 1.89
3050 3455 8.082334 CTGCAGAAGGATAAGATTAAAGCTAC 57.918 38.462 8.42 0.00 0.00 3.58
3079 3484 1.230324 ACTTGCTTCAGAAGAACCGC 58.770 50.000 14.86 0.00 0.00 5.68
3101 3506 8.111545 ACCAAATGTATATATGAGCCATGACAT 58.888 33.333 0.00 0.00 0.00 3.06
3139 3544 7.008901 GCTTCACTATAAATGGTTAAAAACGGC 59.991 37.037 0.00 0.00 0.00 5.68
3141 3546 8.024285 TGGCTTCACTATAAATGGTTAAAAACG 58.976 33.333 0.00 0.00 0.00 3.60
3177 3582 5.768164 ACTTCCCATTCGTGTCTTTTGTATT 59.232 36.000 0.00 0.00 0.00 1.89
3202 3607 8.387813 ACCAAGGTATCAAATCCTAACTTGTTA 58.612 33.333 6.61 0.00 39.81 2.41
3385 3790 4.261909 GCACATTCCTCATTTGGATCATCC 60.262 45.833 0.00 0.00 35.83 3.51
3409 3814 2.034685 CACTCAAGTCCTGACGAAGACA 59.965 50.000 0.00 0.00 35.38 3.41
3442 3847 2.162754 GCTGCGAATGCCATTGTGC 61.163 57.895 0.00 0.00 41.78 4.57
3469 3874 9.262358 AGTAACAGAAAATTATAGCGAAGGATC 57.738 33.333 0.00 0.00 0.00 3.36
3472 3877 8.649973 AGAGTAACAGAAAATTATAGCGAAGG 57.350 34.615 0.00 0.00 0.00 3.46
3482 3887 9.924650 AGTCACGTATAAGAGTAACAGAAAATT 57.075 29.630 0.00 0.00 0.00 1.82
3487 3892 6.175471 TCCAGTCACGTATAAGAGTAACAGA 58.825 40.000 0.00 0.00 0.00 3.41
3519 3924 4.022416 GGTGGTCAGTATCAATTTGCACAA 60.022 41.667 0.00 0.00 0.00 3.33
3558 3963 2.730090 CGCAATAGGAAAGCAGCTGTTG 60.730 50.000 16.64 10.11 0.00 3.33
3643 4050 7.125792 TCTTCTTAACAAAAGACCAGAGAGT 57.874 36.000 0.00 0.00 0.00 3.24
3645 4052 8.840321 CATTTCTTCTTAACAAAAGACCAGAGA 58.160 33.333 0.00 0.00 31.46 3.10
3661 4068 4.220602 GGGTATGTGCCAACATTTCTTCTT 59.779 41.667 0.00 0.00 44.94 2.52
3662 4069 3.763897 GGGTATGTGCCAACATTTCTTCT 59.236 43.478 0.00 0.00 44.94 2.85
3663 4070 3.509575 TGGGTATGTGCCAACATTTCTTC 59.490 43.478 0.00 0.00 44.94 2.87
3743 4153 1.432270 GCATCGACCAGTTGGCTAGC 61.432 60.000 6.04 6.04 39.32 3.42
3772 4182 5.416947 ACATATCGTGTTTGACTAGGGAAC 58.583 41.667 0.00 0.00 38.01 3.62
3811 4221 0.322906 CCCAGGGTTGCTTCTCCTTC 60.323 60.000 0.00 0.00 0.00 3.46
3812 4222 1.770324 CCCAGGGTTGCTTCTCCTT 59.230 57.895 0.00 0.00 0.00 3.36
3815 5183 2.203549 CTCCCCCAGGGTTGCTTCTC 62.204 65.000 4.22 0.00 44.74 2.87
3843 5211 6.018669 GTCTTTATCCGTTCCTATTTCTGCTG 60.019 42.308 0.00 0.00 0.00 4.41
3858 5226 3.119602 TCTCGTTCACTGGTCTTTATCCG 60.120 47.826 0.00 0.00 0.00 4.18
4228 5596 8.081633 TCATTCATGTATCCTTGACAAAACAAC 58.918 33.333 0.00 0.00 0.00 3.32
4273 5646 9.461312 TTGATCTTATACCACTAAGCAAATTGT 57.539 29.630 0.00 0.00 0.00 2.71
4307 5680 8.169268 CACTTATTAGTGCTGCACTTAAGTTAC 58.831 37.037 34.97 13.00 41.35 2.50
4330 5704 5.534207 TGCAAACCTCATCAAATTTCACT 57.466 34.783 0.00 0.00 0.00 3.41
4336 5710 4.501071 GCAGATTGCAAACCTCATCAAAT 58.499 39.130 1.71 0.00 44.26 2.32
4390 5764 5.600696 CTTTTCTTTTACCAGGCACACAAT 58.399 37.500 0.00 0.00 0.00 2.71
4398 5772 4.501400 CCCACAAGCTTTTCTTTTACCAGG 60.501 45.833 0.00 0.00 31.27 4.45
4402 5776 3.990092 CCCCCACAAGCTTTTCTTTTAC 58.010 45.455 0.00 0.00 31.27 2.01
4578 5953 4.274950 TCAGTTGCTTGTTGTAACCTTAGC 59.725 41.667 0.00 0.00 41.29 3.09
4624 6002 3.330267 GAAGAAATATAGCTCCCTGGCG 58.670 50.000 0.00 0.00 37.29 5.69
4655 6033 2.275134 TTGCAGTGGCTTCTTCATCA 57.725 45.000 0.00 0.00 41.91 3.07
4737 6119 6.380846 TGGGAAATCTGGAATACAAGAAATGG 59.619 38.462 0.00 0.00 0.00 3.16
4742 6124 4.949856 GCTTGGGAAATCTGGAATACAAGA 59.050 41.667 0.00 0.00 36.98 3.02
4745 6127 4.314522 TGCTTGGGAAATCTGGAATACA 57.685 40.909 0.00 0.00 0.00 2.29
4781 6163 4.450419 GCAAAGGGATCATCAGAGTAATCG 59.550 45.833 0.00 0.00 0.00 3.34
4787 6169 4.686191 AGTAGCAAAGGGATCATCAGAG 57.314 45.455 0.00 0.00 0.00 3.35
4971 6353 3.341823 AGAAGCGAGCTCATCAATGTTT 58.658 40.909 15.40 0.00 0.00 2.83
5072 6454 1.968493 AGGCCTCGTCAGAGTTTAACA 59.032 47.619 0.00 0.00 42.86 2.41
5076 6458 1.004440 GCAGGCCTCGTCAGAGTTT 60.004 57.895 0.00 0.00 42.86 2.66
5209 6591 4.028490 CCCGCACCAGTAGGCCAA 62.028 66.667 5.01 0.00 39.06 4.52
5308 6690 3.254892 GGAAAAGAGAGCAGGTTCTACG 58.745 50.000 0.00 0.00 0.00 3.51
5332 6715 1.683917 CCTGCAGTAGAGAAGCGGTAT 59.316 52.381 13.81 0.00 32.85 2.73
5715 7099 5.339990 ACTGAAACAGAAACCGAAACAATG 58.660 37.500 5.76 0.00 35.18 2.82
5724 7108 9.031360 GGATAAAAAGAAACTGAAACAGAAACC 57.969 33.333 5.76 0.00 35.18 3.27
5748 7132 2.093890 CTAACAGGCACATGCATTGGA 58.906 47.619 6.15 0.00 44.36 3.53
5790 7174 8.176365 TCAAAATTTCAAACAAAGAACATGCAG 58.824 29.630 0.00 0.00 0.00 4.41
5792 7176 8.892887 TTCAAAATTTCAAACAAAGAACATGC 57.107 26.923 0.00 0.00 0.00 4.06
5878 7262 2.477972 GAAGCCTCGGCAAAAGCACC 62.478 60.000 11.02 0.00 44.88 5.01
5915 7299 4.877251 GGGTAGCTGTCGGTCTATATAGAG 59.123 50.000 12.87 2.87 32.01 2.43
5916 7300 4.324099 GGGGTAGCTGTCGGTCTATATAGA 60.324 50.000 8.44 8.44 0.00 1.98
5917 7301 3.946558 GGGGTAGCTGTCGGTCTATATAG 59.053 52.174 3.10 3.10 0.00 1.31
5918 7302 3.308688 GGGGGTAGCTGTCGGTCTATATA 60.309 52.174 0.00 0.00 0.00 0.86
5919 7303 2.557005 GGGGGTAGCTGTCGGTCTATAT 60.557 54.545 0.00 0.00 0.00 0.86
5920 7304 1.202976 GGGGGTAGCTGTCGGTCTATA 60.203 57.143 0.00 0.00 0.00 1.31
5938 7322 3.937079 GGAACTAACGTTTGTAGATGGGG 59.063 47.826 15.57 0.00 32.39 4.96
5983 7367 2.005451 CTTGGGATTCAAGCGACTCAG 58.995 52.381 0.00 0.00 45.24 3.35
6137 7521 4.381079 CCGGGTTTTGAAACTTTGAAGACA 60.381 41.667 0.00 0.00 38.89 3.41
6150 7538 0.035439 GAGATGGCTCCGGGTTTTGA 60.035 55.000 0.00 0.00 35.01 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.