Multiple sequence alignment - TraesCS6D01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G121400 chr6D 100.000 5261 0 0 1 5261 86542537 86547797 0.000000e+00 9716.0
1 TraesCS6D01G121400 chr6A 91.679 2644 143 34 615 3218 104048582 104051188 0.000000e+00 3592.0
2 TraesCS6D01G121400 chr6A 95.173 2051 71 12 3224 5261 104051352 104053387 0.000000e+00 3214.0
3 TraesCS6D01G121400 chr6A 93.991 233 11 3 388 617 104048073 104048305 3.010000e-92 350.0
4 TraesCS6D01G121400 chr6A 88.612 281 25 3 73 352 550063452 550063178 8.440000e-88 335.0
5 TraesCS6D01G121400 chr6B 92.357 1400 48 17 726 2070 163965239 163966634 0.000000e+00 1938.0
6 TraesCS6D01G121400 chr6B 88.307 1471 131 24 3224 4679 163968036 163969480 0.000000e+00 1725.0
7 TraesCS6D01G121400 chr6B 92.308 1157 72 9 2067 3218 163966706 163967850 0.000000e+00 1628.0
8 TraesCS6D01G121400 chr6B 90.837 502 33 8 4763 5260 163969485 163969977 0.000000e+00 660.0
9 TraesCS6D01G121400 chr5B 90.503 358 26 4 41 390 426983214 426983571 2.870000e-127 466.0
10 TraesCS6D01G121400 chr5B 86.957 276 28 4 119 386 536871414 536871689 2.380000e-78 303.0
11 TraesCS6D01G121400 chr1D 90.652 353 27 3 35 386 293611440 293611787 1.030000e-126 464.0
12 TraesCS6D01G121400 chr2B 90.741 324 21 3 73 388 642811585 642811263 1.750000e-114 424.0
13 TraesCS6D01G121400 chr3B 89.157 332 29 3 60 386 550324456 550324127 1.760000e-109 407.0
14 TraesCS6D01G121400 chr3B 86.455 347 23 8 41 386 595165733 595165410 5.010000e-95 359.0
15 TraesCS6D01G121400 chr3B 81.551 374 23 18 41 386 605453591 605453946 3.120000e-67 267.0
16 TraesCS6D01G121400 chr3B 87.671 219 17 6 191 400 422372977 422372760 4.070000e-61 246.0
17 TraesCS6D01G121400 chr3B 90.909 99 7 2 60 158 725637122 725637026 1.190000e-26 132.0
18 TraesCS6D01G121400 chr3B 95.000 60 3 0 41 100 53773852 53773911 1.560000e-15 95.3
19 TraesCS6D01G121400 chr7D 92.419 277 13 2 84 352 204457528 204457252 6.390000e-104 388.0
20 TraesCS6D01G121400 chr5D 86.942 291 33 1 98 388 447682228 447681943 6.570000e-84 322.0
21 TraesCS6D01G121400 chr5A 82.412 398 31 18 35 393 295308427 295308030 1.420000e-80 311.0
22 TraesCS6D01G121400 chr2A 83.152 368 26 9 36 395 762827803 762827464 2.380000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G121400 chr6D 86542537 86547797 5260 False 9716.000000 9716 100.000000 1 5261 1 chr6D.!!$F1 5260
1 TraesCS6D01G121400 chr6A 104048073 104053387 5314 False 2385.333333 3592 93.614333 388 5261 3 chr6A.!!$F1 4873
2 TraesCS6D01G121400 chr6B 163965239 163969977 4738 False 1487.750000 1938 90.952250 726 5260 4 chr6B.!!$F1 4534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.108207 TTTTACAAGCCCGACCCGAA 59.892 50.0 0.00 0.0 0.00 4.30 F
704 987 0.110147 GTCGGTCGATCTATCCGCAG 60.110 60.0 6.54 0.0 43.35 5.18 F
705 988 0.534427 TCGGTCGATCTATCCGCAGT 60.534 55.0 6.54 0.0 43.35 4.40 F
706 989 0.110147 CGGTCGATCTATCCGCAGTC 60.110 60.0 0.00 0.0 37.90 3.51 F
1743 2085 0.821301 TTGGCAATTCCGTGTGCAGA 60.821 50.0 0.00 0.0 42.74 4.26 F
2950 3384 0.312102 GCAACAGGTTTGTCTCTGCC 59.688 55.0 0.00 0.0 36.23 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 2554 0.036483 TGCCGCATCATGTGTACAGT 60.036 50.000 0.00 0.00 0.00 3.55 R
2535 2968 1.266989 GTTCTCGTTTCTGGCCAAAGG 59.733 52.381 7.01 5.09 0.00 3.11 R
2703 3137 2.378547 ACATCCTTAACCTGCAGGGAAA 59.621 45.455 35.42 25.78 40.27 3.13 R
2705 3139 1.559682 GACATCCTTAACCTGCAGGGA 59.440 52.381 35.42 22.69 40.27 4.20 R
3439 4067 1.145738 AGGTGGAAGACAACCATTGCT 59.854 47.619 0.00 0.00 37.57 3.91 R
4736 5393 0.577269 GTGTCTGTTCAGTGCACGTC 59.423 55.000 12.01 4.05 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.721286 AGCATTACTAGCTTGTACATCATTC 57.279 36.000 7.56 0.00 39.87 2.67
32 33 6.422100 AGCATTACTAGCTTGTACATCATTCG 59.578 38.462 7.56 0.00 39.87 3.34
33 34 6.201044 GCATTACTAGCTTGTACATCATTCGT 59.799 38.462 7.56 0.00 0.00 3.85
34 35 7.254455 GCATTACTAGCTTGTACATCATTCGTT 60.254 37.037 7.56 0.00 0.00 3.85
35 36 7.520119 TTACTAGCTTGTACATCATTCGTTG 57.480 36.000 7.56 0.00 0.00 4.10
36 37 4.870426 ACTAGCTTGTACATCATTCGTTGG 59.130 41.667 0.00 0.00 0.00 3.77
37 38 3.937814 AGCTTGTACATCATTCGTTGGA 58.062 40.909 0.00 0.00 0.00 3.53
38 39 3.935203 AGCTTGTACATCATTCGTTGGAG 59.065 43.478 0.00 0.00 0.00 3.86
39 40 3.932710 GCTTGTACATCATTCGTTGGAGA 59.067 43.478 0.00 0.00 0.00 3.71
40 41 4.572389 GCTTGTACATCATTCGTTGGAGAT 59.428 41.667 0.00 0.00 0.00 2.75
41 42 5.753438 GCTTGTACATCATTCGTTGGAGATA 59.247 40.000 0.00 0.00 0.00 1.98
42 43 6.257849 GCTTGTACATCATTCGTTGGAGATAA 59.742 38.462 0.00 0.00 0.00 1.75
43 44 7.201609 GCTTGTACATCATTCGTTGGAGATAAA 60.202 37.037 0.00 0.00 0.00 1.40
44 45 7.534085 TGTACATCATTCGTTGGAGATAAAC 57.466 36.000 0.00 0.00 0.00 2.01
45 46 7.327975 TGTACATCATTCGTTGGAGATAAACT 58.672 34.615 0.00 0.00 0.00 2.66
46 47 6.910536 ACATCATTCGTTGGAGATAAACTC 57.089 37.500 0.00 0.00 44.24 3.01
47 48 5.520288 ACATCATTCGTTGGAGATAAACTCG 59.480 40.000 0.00 0.00 45.76 4.18
48 49 4.430007 TCATTCGTTGGAGATAAACTCGG 58.570 43.478 0.00 0.00 45.76 4.63
49 50 2.953466 TCGTTGGAGATAAACTCGGG 57.047 50.000 0.00 0.00 45.76 5.14
50 51 1.134907 TCGTTGGAGATAAACTCGGGC 60.135 52.381 0.00 0.00 45.76 6.13
51 52 1.404986 CGTTGGAGATAAACTCGGGCA 60.405 52.381 0.00 0.00 45.76 5.36
52 53 2.741878 CGTTGGAGATAAACTCGGGCAT 60.742 50.000 0.00 0.00 45.76 4.40
53 54 2.614057 GTTGGAGATAAACTCGGGCATG 59.386 50.000 0.00 0.00 45.76 4.06
54 55 1.140852 TGGAGATAAACTCGGGCATGG 59.859 52.381 0.00 0.00 45.76 3.66
55 56 1.543429 GGAGATAAACTCGGGCATGGG 60.543 57.143 0.00 0.00 45.76 4.00
56 57 0.179018 AGATAAACTCGGGCATGGGC 60.179 55.000 0.00 0.00 40.13 5.36
57 58 0.465460 GATAAACTCGGGCATGGGCA 60.465 55.000 0.00 0.00 43.71 5.36
58 59 0.466189 ATAAACTCGGGCATGGGCAG 60.466 55.000 0.00 0.00 43.71 4.85
84 85 4.685467 GACGACCCGGCCCGAAAA 62.685 66.667 18.42 0.00 0.00 2.29
85 86 4.253239 ACGACCCGGCCCGAAAAA 62.253 61.111 18.42 0.00 0.00 1.94
86 87 2.748647 CGACCCGGCCCGAAAAAT 60.749 61.111 3.71 0.00 0.00 1.82
87 88 2.757056 CGACCCGGCCCGAAAAATC 61.757 63.158 3.71 0.00 0.00 2.17
88 89 2.361992 ACCCGGCCCGAAAAATCC 60.362 61.111 3.71 0.00 0.00 3.01
89 90 3.514362 CCCGGCCCGAAAAATCCG 61.514 66.667 3.71 0.00 41.41 4.18
114 115 4.096003 CCGGGTCGGGCTTGACAT 62.096 66.667 11.44 0.00 44.15 3.06
115 116 2.046314 CGGGTCGGGCTTGACATT 60.046 61.111 11.44 0.00 40.72 2.71
116 117 2.106683 CGGGTCGGGCTTGACATTC 61.107 63.158 11.44 1.92 40.72 2.67
117 118 1.002624 GGGTCGGGCTTGACATTCA 60.003 57.895 11.44 0.00 40.72 2.57
118 119 1.026718 GGGTCGGGCTTGACATTCAG 61.027 60.000 11.44 0.00 40.72 3.02
119 120 1.026718 GGTCGGGCTTGACATTCAGG 61.027 60.000 11.44 0.00 40.72 3.86
123 124 3.190878 GCTTGACATTCAGGCCGG 58.809 61.111 0.00 0.00 42.78 6.13
124 125 2.409870 GCTTGACATTCAGGCCGGG 61.410 63.158 2.18 0.00 42.78 5.73
125 126 2.361104 TTGACATTCAGGCCGGGC 60.361 61.111 22.67 22.67 0.00 6.13
126 127 2.826777 CTTGACATTCAGGCCGGGCT 62.827 60.000 27.45 27.45 0.00 5.19
127 128 2.514824 GACATTCAGGCCGGGCTC 60.515 66.667 30.43 12.67 0.00 4.70
128 129 4.473520 ACATTCAGGCCGGGCTCG 62.474 66.667 30.43 22.69 0.00 5.03
138 139 2.983592 CGGGCTCGGGCTTTGTTT 60.984 61.111 7.48 0.00 38.73 2.83
139 140 2.561037 CGGGCTCGGGCTTTGTTTT 61.561 57.895 7.48 0.00 38.73 2.43
140 141 1.006220 GGGCTCGGGCTTTGTTTTG 60.006 57.895 7.48 0.00 38.73 2.44
141 142 1.664649 GGCTCGGGCTTTGTTTTGC 60.665 57.895 7.48 0.00 38.73 3.68
142 143 1.067250 GCTCGGGCTTTGTTTTGCA 59.933 52.632 0.00 0.00 35.22 4.08
143 144 0.940991 GCTCGGGCTTTGTTTTGCAG 60.941 55.000 0.00 0.00 35.22 4.41
144 145 0.940991 CTCGGGCTTTGTTTTGCAGC 60.941 55.000 0.00 0.00 0.00 5.25
145 146 1.955663 CGGGCTTTGTTTTGCAGCC 60.956 57.895 2.37 2.37 44.31 4.85
146 147 4.047834 GGCTTTGTTTTGCAGCCC 57.952 55.556 0.00 0.00 39.57 5.19
147 148 1.145819 GGCTTTGTTTTGCAGCCCA 59.854 52.632 0.00 0.00 39.57 5.36
148 149 0.463474 GGCTTTGTTTTGCAGCCCAA 60.463 50.000 0.00 0.00 39.57 4.12
149 150 1.377536 GCTTTGTTTTGCAGCCCAAA 58.622 45.000 6.58 6.58 41.48 3.28
159 160 3.781079 TGCAGCCCAAAAGATAATTCG 57.219 42.857 0.00 0.00 0.00 3.34
160 161 2.426738 TGCAGCCCAAAAGATAATTCGG 59.573 45.455 0.00 0.00 0.00 4.30
161 162 2.223805 GCAGCCCAAAAGATAATTCGGG 60.224 50.000 0.00 0.00 36.71 5.14
164 165 1.336755 CCCAAAAGATAATTCGGGCCG 59.663 52.381 22.51 22.51 0.00 6.13
165 166 1.336755 CCAAAAGATAATTCGGGCCGG 59.663 52.381 27.98 7.65 0.00 6.13
166 167 1.336755 CAAAAGATAATTCGGGCCGGG 59.663 52.381 27.98 0.00 0.00 5.73
167 168 0.822121 AAAGATAATTCGGGCCGGGC 60.822 55.000 27.98 22.00 0.00 6.13
168 169 1.705997 AAGATAATTCGGGCCGGGCT 61.706 55.000 28.80 12.82 0.00 5.19
169 170 1.228154 GATAATTCGGGCCGGGCTT 60.228 57.895 28.80 18.45 0.00 4.35
170 171 1.515521 GATAATTCGGGCCGGGCTTG 61.516 60.000 28.80 20.30 0.00 4.01
171 172 2.976494 ATAATTCGGGCCGGGCTTGG 62.976 60.000 28.80 17.12 0.00 3.61
179 180 2.362889 CCGGGCTTGGGCTTCAAT 60.363 61.111 0.00 0.00 38.73 2.57
180 181 1.984026 CCGGGCTTGGGCTTCAATT 60.984 57.895 0.00 0.00 38.73 2.32
181 182 1.543944 CCGGGCTTGGGCTTCAATTT 61.544 55.000 0.00 0.00 38.73 1.82
182 183 0.321346 CGGGCTTGGGCTTCAATTTT 59.679 50.000 0.00 0.00 38.73 1.82
183 184 1.270785 CGGGCTTGGGCTTCAATTTTT 60.271 47.619 0.00 0.00 38.73 1.94
184 185 2.426522 GGGCTTGGGCTTCAATTTTTC 58.573 47.619 0.00 0.00 38.73 2.29
185 186 2.038952 GGGCTTGGGCTTCAATTTTTCT 59.961 45.455 0.00 0.00 38.73 2.52
186 187 3.069289 GGCTTGGGCTTCAATTTTTCTG 58.931 45.455 0.00 0.00 38.73 3.02
187 188 3.494924 GGCTTGGGCTTCAATTTTTCTGT 60.495 43.478 0.00 0.00 38.73 3.41
188 189 4.262420 GGCTTGGGCTTCAATTTTTCTGTA 60.262 41.667 0.00 0.00 38.73 2.74
189 190 5.482006 GCTTGGGCTTCAATTTTTCTGTAT 58.518 37.500 0.00 0.00 34.45 2.29
190 191 5.934043 GCTTGGGCTTCAATTTTTCTGTATT 59.066 36.000 0.00 0.00 34.45 1.89
191 192 6.427853 GCTTGGGCTTCAATTTTTCTGTATTT 59.572 34.615 0.00 0.00 34.45 1.40
192 193 7.360353 GCTTGGGCTTCAATTTTTCTGTATTTC 60.360 37.037 0.00 0.00 34.45 2.17
193 194 6.155827 TGGGCTTCAATTTTTCTGTATTTCG 58.844 36.000 0.00 0.00 0.00 3.46
194 195 5.576774 GGGCTTCAATTTTTCTGTATTTCGG 59.423 40.000 0.00 0.00 0.00 4.30
195 196 5.576774 GGCTTCAATTTTTCTGTATTTCGGG 59.423 40.000 0.00 0.00 0.00 5.14
196 197 5.062183 GCTTCAATTTTTCTGTATTTCGGGC 59.938 40.000 0.00 0.00 0.00 6.13
197 198 5.066968 TCAATTTTTCTGTATTTCGGGCC 57.933 39.130 0.00 0.00 0.00 5.80
198 199 3.775661 ATTTTTCTGTATTTCGGGCCG 57.224 42.857 22.51 22.51 0.00 6.13
199 200 1.455248 TTTTCTGTATTTCGGGCCGG 58.545 50.000 27.98 8.04 0.00 6.13
200 201 0.393267 TTTCTGTATTTCGGGCCGGG 60.393 55.000 27.98 7.82 0.00 5.73
201 202 2.879813 TTCTGTATTTCGGGCCGGGC 62.880 60.000 27.98 22.00 0.00 6.13
202 203 3.400599 CTGTATTTCGGGCCGGGCT 62.401 63.158 28.80 12.99 0.00 5.19
203 204 2.124445 GTATTTCGGGCCGGGCTT 60.124 61.111 28.80 11.28 0.00 4.35
204 205 2.124487 TATTTCGGGCCGGGCTTG 60.124 61.111 28.80 20.30 0.00 4.01
238 239 1.663173 AAAAACAACATCCGGGCCG 59.337 52.632 21.46 21.46 0.00 6.13
252 253 4.760047 GCCGGGCTTCGAGCTTGA 62.760 66.667 12.87 0.00 41.99 3.02
253 254 2.187946 CCGGGCTTCGAGCTTGAT 59.812 61.111 3.98 0.00 41.99 2.57
254 255 1.450312 CCGGGCTTCGAGCTTGATT 60.450 57.895 3.98 0.00 41.99 2.57
255 256 1.026718 CCGGGCTTCGAGCTTGATTT 61.027 55.000 3.98 0.00 41.99 2.17
256 257 0.375106 CGGGCTTCGAGCTTGATTTC 59.625 55.000 3.98 0.00 41.99 2.17
257 258 0.375106 GGGCTTCGAGCTTGATTTCG 59.625 55.000 3.98 0.00 41.99 3.46
258 259 0.375106 GGCTTCGAGCTTGATTTCGG 59.625 55.000 3.98 0.00 41.99 4.30
259 260 0.375106 GCTTCGAGCTTGATTTCGGG 59.625 55.000 3.98 0.00 38.45 5.14
260 261 0.375106 CTTCGAGCTTGATTTCGGGC 59.625 55.000 3.98 0.00 37.42 6.13
261 262 1.024579 TTCGAGCTTGATTTCGGGCC 61.025 55.000 3.98 0.00 37.42 5.80
262 263 2.813179 CGAGCTTGATTTCGGGCCG 61.813 63.158 22.51 22.51 33.39 6.13
263 264 2.438434 AGCTTGATTTCGGGCCGG 60.438 61.111 27.98 9.08 0.00 6.13
264 265 3.518068 GCTTGATTTCGGGCCGGG 61.518 66.667 27.98 8.68 0.00 5.73
265 266 3.518068 CTTGATTTCGGGCCGGGC 61.518 66.667 27.98 22.00 0.00 6.13
266 267 3.995506 CTTGATTTCGGGCCGGGCT 62.996 63.158 28.80 10.61 0.00 5.19
267 268 3.987954 TTGATTTCGGGCCGGGCTC 62.988 63.158 28.80 15.19 0.00 4.70
268 269 4.483243 GATTTCGGGCCGGGCTCA 62.483 66.667 28.80 11.86 0.00 4.26
269 270 4.489771 ATTTCGGGCCGGGCTCAG 62.490 66.667 28.80 18.88 0.00 3.35
277 278 2.034066 CCGGGCTCAGGCTTGAAA 59.966 61.111 0.00 0.00 38.73 2.69
278 279 1.603455 CCGGGCTCAGGCTTGAAAA 60.603 57.895 0.00 0.00 38.73 2.29
279 280 1.581447 CGGGCTCAGGCTTGAAAAC 59.419 57.895 0.00 0.00 38.73 2.43
280 281 1.172180 CGGGCTCAGGCTTGAAAACA 61.172 55.000 0.00 0.00 38.73 2.83
281 282 0.600057 GGGCTCAGGCTTGAAAACAG 59.400 55.000 0.00 0.00 38.73 3.16
282 283 0.600057 GGCTCAGGCTTGAAAACAGG 59.400 55.000 0.00 0.00 38.73 4.00
283 284 0.600057 GCTCAGGCTTGAAAACAGGG 59.400 55.000 0.00 0.00 31.69 4.45
284 285 1.819305 GCTCAGGCTTGAAAACAGGGA 60.819 52.381 0.00 0.00 31.69 4.20
285 286 2.157738 CTCAGGCTTGAAAACAGGGAG 58.842 52.381 0.00 0.00 31.69 4.30
286 287 1.494721 TCAGGCTTGAAAACAGGGAGT 59.505 47.619 0.00 0.00 0.00 3.85
287 288 2.708861 TCAGGCTTGAAAACAGGGAGTA 59.291 45.455 0.00 0.00 0.00 2.59
288 289 3.330701 TCAGGCTTGAAAACAGGGAGTAT 59.669 43.478 0.00 0.00 0.00 2.12
289 290 4.082125 CAGGCTTGAAAACAGGGAGTATT 58.918 43.478 0.00 0.00 0.00 1.89
290 291 4.524328 CAGGCTTGAAAACAGGGAGTATTT 59.476 41.667 0.00 0.00 0.00 1.40
291 292 4.767409 AGGCTTGAAAACAGGGAGTATTTC 59.233 41.667 0.00 0.00 32.61 2.17
292 293 4.522789 GGCTTGAAAACAGGGAGTATTTCA 59.477 41.667 0.00 0.00 36.44 2.69
293 294 5.335976 GGCTTGAAAACAGGGAGTATTTCAG 60.336 44.000 0.00 0.00 37.91 3.02
294 295 5.335976 GCTTGAAAACAGGGAGTATTTCAGG 60.336 44.000 0.00 0.00 37.91 3.86
295 296 4.079253 TGAAAACAGGGAGTATTTCAGGC 58.921 43.478 0.00 0.00 34.92 4.85
296 297 4.202567 TGAAAACAGGGAGTATTTCAGGCT 60.203 41.667 0.00 0.00 34.92 4.58
297 298 4.388577 AAACAGGGAGTATTTCAGGCTT 57.611 40.909 0.00 0.00 0.00 4.35
298 299 3.636153 ACAGGGAGTATTTCAGGCTTC 57.364 47.619 0.00 0.00 0.00 3.86
299 300 2.093447 ACAGGGAGTATTTCAGGCTTCG 60.093 50.000 0.00 0.00 0.00 3.79
300 301 1.486726 AGGGAGTATTTCAGGCTTCGG 59.513 52.381 0.00 0.00 0.00 4.30
301 302 1.475213 GGGAGTATTTCAGGCTTCGGG 60.475 57.143 0.00 0.00 0.00 5.14
302 303 1.300481 GAGTATTTCAGGCTTCGGGC 58.700 55.000 0.00 0.00 41.18 6.13
319 320 4.033776 CCGGGCTTGGGCTTGAGA 62.034 66.667 0.00 0.00 38.73 3.27
320 321 2.034066 CGGGCTTGGGCTTGAGAA 59.966 61.111 0.00 0.00 38.73 2.87
321 322 1.603455 CGGGCTTGGGCTTGAGAAA 60.603 57.895 0.00 0.00 38.73 2.52
322 323 0.967380 CGGGCTTGGGCTTGAGAAAT 60.967 55.000 0.00 0.00 38.73 2.17
323 324 1.681780 CGGGCTTGGGCTTGAGAAATA 60.682 52.381 0.00 0.00 38.73 1.40
324 325 2.456577 GGGCTTGGGCTTGAGAAATAA 58.543 47.619 0.00 0.00 38.73 1.40
325 326 2.831526 GGGCTTGGGCTTGAGAAATAAA 59.168 45.455 0.00 0.00 38.73 1.40
326 327 3.118992 GGGCTTGGGCTTGAGAAATAAAG 60.119 47.826 0.00 0.00 38.73 1.85
327 328 3.118992 GGCTTGGGCTTGAGAAATAAAGG 60.119 47.826 0.00 0.00 38.73 3.11
328 329 3.511540 GCTTGGGCTTGAGAAATAAAGGT 59.488 43.478 0.00 0.00 35.22 3.50
329 330 4.380973 GCTTGGGCTTGAGAAATAAAGGTC 60.381 45.833 0.00 0.00 35.22 3.85
330 331 3.343617 TGGGCTTGAGAAATAAAGGTCG 58.656 45.455 0.00 0.00 0.00 4.79
331 332 2.683362 GGGCTTGAGAAATAAAGGTCGG 59.317 50.000 0.00 0.00 0.00 4.79
332 333 2.683362 GGCTTGAGAAATAAAGGTCGGG 59.317 50.000 0.00 0.00 0.00 5.14
333 334 2.097629 GCTTGAGAAATAAAGGTCGGGC 59.902 50.000 0.00 0.00 0.00 6.13
334 335 3.610911 CTTGAGAAATAAAGGTCGGGCT 58.389 45.455 0.00 0.00 0.00 5.19
335 336 3.713826 TGAGAAATAAAGGTCGGGCTT 57.286 42.857 0.00 0.00 0.00 4.35
336 337 4.028993 TGAGAAATAAAGGTCGGGCTTT 57.971 40.909 0.00 0.00 0.00 3.51
337 338 4.403734 TGAGAAATAAAGGTCGGGCTTTT 58.596 39.130 0.00 0.00 0.00 2.27
338 339 5.562635 TGAGAAATAAAGGTCGGGCTTTTA 58.437 37.500 0.00 0.00 33.98 1.52
339 340 5.413523 TGAGAAATAAAGGTCGGGCTTTTAC 59.586 40.000 0.00 0.00 32.59 2.01
340 341 5.318630 AGAAATAAAGGTCGGGCTTTTACA 58.681 37.500 0.00 0.00 32.59 2.41
341 342 5.771165 AGAAATAAAGGTCGGGCTTTTACAA 59.229 36.000 0.00 0.00 32.59 2.41
342 343 5.638596 AATAAAGGTCGGGCTTTTACAAG 57.361 39.130 0.00 0.00 32.59 3.16
351 352 2.168054 CTTTTACAAGCCCGACCCG 58.832 57.895 0.00 0.00 0.00 5.28
352 353 0.320946 CTTTTACAAGCCCGACCCGA 60.321 55.000 0.00 0.00 0.00 5.14
353 354 0.108207 TTTTACAAGCCCGACCCGAA 59.892 50.000 0.00 0.00 0.00 4.30
354 355 0.108207 TTTACAAGCCCGACCCGAAA 59.892 50.000 0.00 0.00 0.00 3.46
355 356 0.603439 TTACAAGCCCGACCCGAAAC 60.603 55.000 0.00 0.00 0.00 2.78
356 357 2.453379 TACAAGCCCGACCCGAAACC 62.453 60.000 0.00 0.00 0.00 3.27
357 358 4.340246 AAGCCCGACCCGAAACCC 62.340 66.667 0.00 0.00 0.00 4.11
384 385 3.281395 CGACGTTTGCCCGGGTTT 61.281 61.111 24.63 0.00 0.00 3.27
385 386 1.960250 CGACGTTTGCCCGGGTTTA 60.960 57.895 24.63 6.20 0.00 2.01
386 387 1.871077 GACGTTTGCCCGGGTTTAG 59.129 57.895 24.63 12.72 0.00 1.85
440 441 5.721232 TCCTAACTTCTTTTCCTCGCTAAG 58.279 41.667 0.00 0.00 0.00 2.18
441 442 5.479375 TCCTAACTTCTTTTCCTCGCTAAGA 59.521 40.000 0.00 0.00 0.00 2.10
442 443 5.577554 CCTAACTTCTTTTCCTCGCTAAGAC 59.422 44.000 0.00 0.00 0.00 3.01
455 457 1.935300 GCTAAGACACGGGCGATATGG 60.935 57.143 0.00 0.00 0.00 2.74
502 504 8.844441 TTTATTTTTACACAAAGTCCTTGACG 57.156 30.769 0.00 0.00 38.50 4.35
510 512 5.465724 ACACAAAGTCCTTGACGAAATCTAC 59.534 40.000 0.00 0.00 38.50 2.59
529 532 2.050350 CATGAGCAACCAGGCCCAG 61.050 63.158 0.00 0.00 0.00 4.45
549 552 0.734942 CATTTTTGCTGGCCTCGCAG 60.735 55.000 17.56 2.04 38.80 5.18
581 584 7.455008 AGGGATGTATTTTATCGTCTGGATACT 59.545 37.037 0.00 0.00 37.35 2.12
582 585 7.760340 GGGATGTATTTTATCGTCTGGATACTC 59.240 40.741 0.00 0.00 37.35 2.59
595 599 5.047731 GTCTGGATACTCTGCATATGCTACA 60.048 44.000 27.13 12.51 38.92 2.74
620 903 3.541242 TTGATGGGTCCCAAACTTGAT 57.459 42.857 16.55 0.00 36.95 2.57
656 939 2.750637 ACGTGGGTCGCGATCTCT 60.751 61.111 20.42 0.00 44.19 3.10
676 959 0.312729 GGCCGTAAACCCACACTTTG 59.687 55.000 0.00 0.00 0.00 2.77
677 960 0.318360 GCCGTAAACCCACACTTTGC 60.318 55.000 0.00 0.00 0.00 3.68
678 961 1.314730 CCGTAAACCCACACTTTGCT 58.685 50.000 0.00 0.00 0.00 3.91
679 962 1.265905 CCGTAAACCCACACTTTGCTC 59.734 52.381 0.00 0.00 0.00 4.26
680 963 1.070175 CGTAAACCCACACTTTGCTCG 60.070 52.381 0.00 0.00 0.00 5.03
681 964 2.215196 GTAAACCCACACTTTGCTCGA 58.785 47.619 0.00 0.00 0.00 4.04
682 965 1.021968 AAACCCACACTTTGCTCGAC 58.978 50.000 0.00 0.00 0.00 4.20
683 966 1.157870 AACCCACACTTTGCTCGACG 61.158 55.000 0.00 0.00 0.00 5.12
684 967 1.594293 CCCACACTTTGCTCGACGT 60.594 57.895 0.00 0.00 0.00 4.34
686 969 1.151777 CCACACTTTGCTCGACGTGT 61.152 55.000 0.00 0.00 40.91 4.49
687 970 0.229753 CACACTTTGCTCGACGTGTC 59.770 55.000 0.00 0.00 38.44 3.67
699 982 2.297547 GACGTGTCGGTCGATCTATC 57.702 55.000 0.00 0.00 0.00 2.08
700 983 0.942962 ACGTGTCGGTCGATCTATCC 59.057 55.000 0.00 0.00 0.00 2.59
701 984 0.110778 CGTGTCGGTCGATCTATCCG 60.111 60.000 5.12 5.12 44.76 4.18
702 985 0.385723 GTGTCGGTCGATCTATCCGC 60.386 60.000 6.54 3.40 43.35 5.54
703 986 0.816421 TGTCGGTCGATCTATCCGCA 60.816 55.000 6.54 5.69 43.35 5.69
704 987 0.110147 GTCGGTCGATCTATCCGCAG 60.110 60.000 6.54 0.00 43.35 5.18
705 988 0.534427 TCGGTCGATCTATCCGCAGT 60.534 55.000 6.54 0.00 43.35 4.40
706 989 0.110147 CGGTCGATCTATCCGCAGTC 60.110 60.000 0.00 0.00 37.90 3.51
707 990 1.240256 GGTCGATCTATCCGCAGTCT 58.760 55.000 0.00 0.00 0.00 3.24
708 991 1.198178 GGTCGATCTATCCGCAGTCTC 59.802 57.143 0.00 0.00 0.00 3.36
709 992 1.136197 GTCGATCTATCCGCAGTCTCG 60.136 57.143 0.00 0.00 0.00 4.04
710 993 1.149148 CGATCTATCCGCAGTCTCGA 58.851 55.000 0.00 0.00 0.00 4.04
711 994 1.136197 CGATCTATCCGCAGTCTCGAC 60.136 57.143 0.00 0.00 0.00 4.20
712 995 1.874231 GATCTATCCGCAGTCTCGACA 59.126 52.381 0.00 0.00 0.00 4.35
744 1027 1.880796 CAATCACCGCGCGACCATA 60.881 57.895 34.63 12.18 0.00 2.74
841 1135 2.089201 CCACCGTCAAAATCCCCTAAC 58.911 52.381 0.00 0.00 0.00 2.34
846 1140 5.650703 CACCGTCAAAATCCCCTAACTAATT 59.349 40.000 0.00 0.00 0.00 1.40
912 1225 1.421877 CGCAAACGACACACACACA 59.578 52.632 0.00 0.00 43.93 3.72
950 1263 1.542915 CCCGTTTCACCGTAGAGAGAA 59.457 52.381 0.00 0.00 0.00 2.87
951 1264 2.165845 CCCGTTTCACCGTAGAGAGAAT 59.834 50.000 0.00 0.00 0.00 2.40
954 1267 3.734293 CGTTTCACCGTAGAGAGAATCCC 60.734 52.174 0.00 0.00 33.66 3.85
985 1327 4.179579 GGCATTTCCGCGAGCACC 62.180 66.667 8.23 0.00 0.00 5.01
986 1328 3.127533 GCATTTCCGCGAGCACCT 61.128 61.111 8.23 0.00 0.00 4.00
987 1329 2.690778 GCATTTCCGCGAGCACCTT 61.691 57.895 8.23 0.00 0.00 3.50
988 1330 1.425428 CATTTCCGCGAGCACCTTC 59.575 57.895 8.23 0.00 0.00 3.46
989 1331 1.745489 ATTTCCGCGAGCACCTTCC 60.745 57.895 8.23 0.00 0.00 3.46
990 1332 4.735132 TTCCGCGAGCACCTTCCG 62.735 66.667 8.23 0.00 0.00 4.30
1515 1857 2.608988 CTGCAGGGGGAGGTCTGT 60.609 66.667 5.57 0.00 33.81 3.41
1704 2046 3.008835 TCAGCAAGCTATCCTGCATTT 57.991 42.857 10.57 0.00 34.99 2.32
1706 2048 3.379372 TCAGCAAGCTATCCTGCATTTTC 59.621 43.478 10.57 0.00 34.99 2.29
1714 2056 6.799512 AGCTATCCTGCATTTTCAACATTAC 58.200 36.000 0.00 0.00 34.99 1.89
1743 2085 0.821301 TTGGCAATTCCGTGTGCAGA 60.821 50.000 0.00 0.00 42.74 4.26
1841 2185 5.163447 GGCCTTCTTTGTATAATTTCCCCAC 60.163 44.000 0.00 0.00 0.00 4.61
1865 2209 4.331443 GTGAAATGGTGTACGCATGATACA 59.669 41.667 8.97 1.05 0.00 2.29
1980 2338 2.668457 GTGGTCTGCTGTTGATAAGTCG 59.332 50.000 0.00 0.00 0.00 4.18
2094 2527 7.488322 AGTATTGTTAAAAGTGAAAGCAAGCA 58.512 30.769 0.00 0.00 0.00 3.91
2095 2528 8.143835 AGTATTGTTAAAAGTGAAAGCAAGCAT 58.856 29.630 0.00 0.00 0.00 3.79
2096 2529 9.405587 GTATTGTTAAAAGTGAAAGCAAGCATA 57.594 29.630 0.00 0.00 0.00 3.14
2115 2548 7.281040 AGCATATACATCATTTTCCCAACTG 57.719 36.000 0.00 0.00 0.00 3.16
2147 2580 1.317431 ACATGATGCGGCACATGCTT 61.317 50.000 28.87 17.20 45.03 3.91
2163 2596 6.400303 GCACATGCTTGTTATGATTTCACAAC 60.400 38.462 1.83 0.00 38.21 3.32
2164 2597 6.089820 CACATGCTTGTTATGATTTCACAACC 59.910 38.462 1.83 0.00 32.62 3.77
2201 2634 5.784750 TCAACATCTTGTTTCTATCTGCG 57.215 39.130 0.00 0.00 38.77 5.18
2203 2636 2.939103 ACATCTTGTTTCTATCTGCGGC 59.061 45.455 0.00 0.00 0.00 6.53
2253 2686 5.880332 TGACACCTCTTGGAATTATAGCAAC 59.120 40.000 0.00 0.00 37.04 4.17
2273 2706 1.373570 GTGGTCTGCTGTTGATAGGC 58.626 55.000 0.00 0.00 0.00 3.93
2274 2707 1.065854 GTGGTCTGCTGTTGATAGGCT 60.066 52.381 0.00 0.00 0.00 4.58
2276 2709 1.065854 GGTCTGCTGTTGATAGGCTGT 60.066 52.381 0.00 0.00 0.00 4.40
2280 2713 3.753272 TCTGCTGTTGATAGGCTGTTTTC 59.247 43.478 0.00 0.00 0.00 2.29
2282 2715 2.819608 GCTGTTGATAGGCTGTTTTCCA 59.180 45.455 0.00 0.00 0.00 3.53
2301 2734 8.299570 GTTTTCCACTTGTGTTCATCAGATAAT 58.700 33.333 0.00 0.00 0.00 1.28
2302 2735 6.990341 TCCACTTGTGTTCATCAGATAATG 57.010 37.500 0.00 0.00 0.00 1.90
2305 2738 7.335171 TCCACTTGTGTTCATCAGATAATGAAG 59.665 37.037 0.00 0.00 44.18 3.02
2427 2860 5.259632 AGCAAGCCTACATCATTTTCTCTT 58.740 37.500 0.00 0.00 0.00 2.85
2428 2861 5.125097 AGCAAGCCTACATCATTTTCTCTTG 59.875 40.000 0.00 0.00 33.57 3.02
2429 2862 5.124457 GCAAGCCTACATCATTTTCTCTTGA 59.876 40.000 0.00 0.00 32.53 3.02
2430 2863 6.549952 CAAGCCTACATCATTTTCTCTTGAC 58.450 40.000 0.00 0.00 32.53 3.18
2431 2864 6.059787 AGCCTACATCATTTTCTCTTGACT 57.940 37.500 0.00 0.00 0.00 3.41
2432 2865 5.879223 AGCCTACATCATTTTCTCTTGACTG 59.121 40.000 0.00 0.00 0.00 3.51
2433 2866 5.877012 GCCTACATCATTTTCTCTTGACTGA 59.123 40.000 0.00 0.00 0.00 3.41
2435 2868 7.712639 GCCTACATCATTTTCTCTTGACTGATA 59.287 37.037 0.00 0.00 0.00 2.15
2445 2878 8.858003 TTTCTCTTGACTGATAATATGTCGTC 57.142 34.615 0.00 0.00 33.81 4.20
2627 3060 8.616076 CCATGAGAAGTTATGTTATCCTTCAAC 58.384 37.037 0.00 0.00 36.60 3.18
2682 3116 6.183360 GGAATGTTCTTCAGGTAATAGTGTGC 60.183 42.308 0.00 0.00 0.00 4.57
2703 3137 5.412286 GTGCCAAAATCATAACCTGCAAAAT 59.588 36.000 0.00 0.00 0.00 1.82
2705 3139 6.489361 TGCCAAAATCATAACCTGCAAAATTT 59.511 30.769 0.00 0.00 0.00 1.82
2950 3384 0.312102 GCAACAGGTTTGTCTCTGCC 59.688 55.000 0.00 0.00 36.23 4.85
2967 3401 5.189736 TCTCTGCCCAGTCTTTATGTATGTT 59.810 40.000 0.00 0.00 0.00 2.71
2973 3407 7.066887 TGCCCAGTCTTTATGTATGTTGTTATG 59.933 37.037 0.00 0.00 0.00 1.90
3003 3437 2.529632 AGAGGCAGGATTTGGAAAACC 58.470 47.619 0.00 0.00 0.00 3.27
3004 3438 2.110721 AGAGGCAGGATTTGGAAAACCT 59.889 45.455 0.00 0.00 41.28 3.50
3012 3446 4.588951 AGGATTTGGAAAACCTTCTGGAAC 59.411 41.667 0.00 0.00 37.88 3.62
3016 3450 5.948742 TTGGAAAACCTTCTGGAACAATT 57.051 34.783 0.00 0.00 38.70 2.32
3034 3468 8.147704 GGAACAATTCTCTGGAAAATGGTAAAA 58.852 33.333 0.00 0.00 34.90 1.52
3039 3473 4.466015 TCTCTGGAAAATGGTAAAATGGGC 59.534 41.667 0.00 0.00 0.00 5.36
3042 3476 4.646572 TGGAAAATGGTAAAATGGGCAAC 58.353 39.130 0.00 0.00 0.00 4.17
3054 3488 0.903924 TGGGCAACAACATCCATGGG 60.904 55.000 13.02 0.00 39.74 4.00
3062 3496 2.580322 ACAACATCCATGGGTGGTATCA 59.420 45.455 28.54 0.00 46.16 2.15
3068 3502 4.599720 TCCATGGGTGGTATCATTCAAA 57.400 40.909 13.02 0.00 46.16 2.69
3098 3532 8.945195 ATATCATCCATCTTTGGCATAAAGAA 57.055 30.769 16.25 4.44 43.29 2.52
3149 3583 7.201539 GCACAAGTGTTAAAAATAAAACCGGTT 60.202 33.333 15.86 15.86 0.00 4.44
3162 3596 5.352643 AAAACCGGTTATGAAAAGAGACG 57.647 39.130 22.60 0.00 0.00 4.18
3203 3639 8.099704 CGCTGTTTAACAAGTGTTTCTTTTTAC 58.900 33.333 1.35 0.00 39.31 2.01
3259 3887 6.995511 TGTACCCTAAATCTACAAATGTGC 57.004 37.500 0.00 0.00 0.00 4.57
3425 4053 6.877236 AGTTGAATCTTTGGTGTTGAACAAT 58.123 32.000 0.00 0.00 0.00 2.71
3438 4066 5.005682 GTGTTGAACAATTGAACTTTCTGCC 59.994 40.000 13.59 0.00 0.00 4.85
3439 4067 4.998671 TGAACAATTGAACTTTCTGCCA 57.001 36.364 13.59 0.00 0.00 4.92
3469 4097 6.270463 TGGTTGTCTTCCACCTAGTAATGTTA 59.730 38.462 0.00 0.00 0.00 2.41
3560 4204 1.774110 ATTGTCCTGTGGTGCAACAA 58.226 45.000 5.70 2.61 39.98 2.83
3561 4205 1.102154 TTGTCCTGTGGTGCAACAAG 58.898 50.000 5.70 6.48 39.98 3.16
3562 4206 0.254462 TGTCCTGTGGTGCAACAAGA 59.746 50.000 5.70 0.10 39.98 3.02
3858 4503 1.630369 ACTGGCTAGCCACATTCAGAA 59.370 47.619 32.88 8.47 41.89 3.02
3860 4505 1.350684 TGGCTAGCCACATTCAGAACA 59.649 47.619 32.88 5.00 41.89 3.18
3911 4558 2.053627 CAAGCGCATTTTGGTCACTTC 58.946 47.619 11.47 0.00 0.00 3.01
3977 4624 5.625150 AGAAGTAGCTTTGAAGAATGTGGT 58.375 37.500 0.00 0.00 0.00 4.16
3987 4634 6.441093 TTGAAGAATGTGGTATCATCTTGC 57.559 37.500 0.00 0.00 0.00 4.01
4008 4655 7.450014 TCTTGCTATAAAACTGAATCAACCCAA 59.550 33.333 0.00 0.00 0.00 4.12
4035 4682 6.484308 CCAATTTCCTTCTGTTCTTTTGCATT 59.516 34.615 0.00 0.00 0.00 3.56
4065 4712 8.819845 TCTGTTGGTATGCTTGATATGATCTAT 58.180 33.333 0.00 0.00 0.00 1.98
4086 4733 2.074967 CCCCCTTCACTAACAGGCA 58.925 57.895 0.00 0.00 0.00 4.75
4095 4742 2.153645 CACTAACAGGCATGCTTGACA 58.846 47.619 33.61 19.45 30.96 3.58
4224 4871 3.061322 CAAAAACGTCGTGTCTGGGATA 58.939 45.455 0.00 0.00 0.00 2.59
4265 4912 1.737793 CTCCGCTGGATTGTAACCAAC 59.262 52.381 0.00 0.00 36.95 3.77
4277 4924 4.955925 TGTAACCAACTCTTTGTGTGTG 57.044 40.909 0.00 0.00 0.00 3.82
4286 4933 1.454847 TTTGTGTGTGGCCTGTCCC 60.455 57.895 3.32 0.00 0.00 4.46
4356 5003 9.895138 TCAGATAAATTCTTGTGAATCTGATCA 57.105 29.630 8.37 0.00 41.62 2.92
4423 5070 3.895232 AGAGTATGTGTTCGAAGGCAT 57.105 42.857 15.71 15.71 0.00 4.40
4447 5098 0.768221 TCATCACCCCATAGCCCCTC 60.768 60.000 0.00 0.00 0.00 4.30
4458 5109 3.511934 CCATAGCCCCTCTGTATAGTGTC 59.488 52.174 0.00 0.00 0.00 3.67
4482 5134 7.169982 GTCTTGTTAGAGGAATATGTGGAATCG 59.830 40.741 0.00 0.00 0.00 3.34
4502 5154 2.182014 GTGTTCGTTGGTTGTTCAAGC 58.818 47.619 7.65 7.65 0.00 4.01
4503 5155 1.813178 TGTTCGTTGGTTGTTCAAGCA 59.187 42.857 12.40 12.40 0.00 3.91
4509 5161 1.311859 TGGTTGTTCAAGCAGAGCTG 58.688 50.000 12.40 0.00 39.62 4.24
4590 5247 4.634012 ATGGTTGCTGTAGTTAACTCCA 57.366 40.909 12.39 11.65 0.00 3.86
4611 5268 3.985279 CAGTTTGTGGCAGATTTGTGATG 59.015 43.478 0.00 0.00 0.00 3.07
4664 5321 2.680974 AATCACACGCAGGCCACAGT 62.681 55.000 5.01 0.00 0.00 3.55
4736 5393 7.095910 AGAATAGACATTCGCCATGAATCTAG 58.904 38.462 0.00 0.00 45.59 2.43
4969 5630 0.393537 CTCCGAAGCTGGATTTGGCT 60.394 55.000 0.32 0.00 37.41 4.75
5111 5772 8.873830 AGTAGTCAAAAGACATCATAAATGACG 58.126 33.333 0.00 0.00 40.51 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.422100 CGAATGATGTACAAGCTAGTAATGCT 59.578 38.462 0.00 0.00 43.32 3.79
8 9 6.201044 ACGAATGATGTACAAGCTAGTAATGC 59.799 38.462 0.00 0.00 0.00 3.56
9 10 7.700322 ACGAATGATGTACAAGCTAGTAATG 57.300 36.000 0.00 0.00 0.00 1.90
10 11 7.224753 CCAACGAATGATGTACAAGCTAGTAAT 59.775 37.037 0.00 0.00 0.00 1.89
11 12 6.533723 CCAACGAATGATGTACAAGCTAGTAA 59.466 38.462 0.00 0.00 0.00 2.24
12 13 6.040247 CCAACGAATGATGTACAAGCTAGTA 58.960 40.000 0.00 0.00 0.00 1.82
13 14 4.870426 CCAACGAATGATGTACAAGCTAGT 59.130 41.667 0.00 0.00 0.00 2.57
14 15 5.109210 TCCAACGAATGATGTACAAGCTAG 58.891 41.667 0.00 0.00 0.00 3.42
15 16 5.079689 TCCAACGAATGATGTACAAGCTA 57.920 39.130 0.00 0.00 0.00 3.32
16 17 3.935203 CTCCAACGAATGATGTACAAGCT 59.065 43.478 0.00 0.00 0.00 3.74
17 18 3.932710 TCTCCAACGAATGATGTACAAGC 59.067 43.478 0.00 0.00 0.00 4.01
18 19 7.770801 TTATCTCCAACGAATGATGTACAAG 57.229 36.000 0.00 0.00 0.00 3.16
19 20 7.822334 AGTTTATCTCCAACGAATGATGTACAA 59.178 33.333 0.00 0.00 0.00 2.41
20 21 7.327975 AGTTTATCTCCAACGAATGATGTACA 58.672 34.615 0.00 0.00 0.00 2.90
21 22 7.306051 CGAGTTTATCTCCAACGAATGATGTAC 60.306 40.741 0.00 0.00 39.84 2.90
22 23 6.695713 CGAGTTTATCTCCAACGAATGATGTA 59.304 38.462 0.00 0.00 39.84 2.29
23 24 5.520288 CGAGTTTATCTCCAACGAATGATGT 59.480 40.000 0.00 0.00 39.84 3.06
24 25 5.050769 CCGAGTTTATCTCCAACGAATGATG 60.051 44.000 0.00 0.00 39.84 3.07
25 26 5.050490 CCGAGTTTATCTCCAACGAATGAT 58.950 41.667 0.00 0.00 39.84 2.45
26 27 4.430007 CCGAGTTTATCTCCAACGAATGA 58.570 43.478 0.00 0.00 39.84 2.57
27 28 3.555956 CCCGAGTTTATCTCCAACGAATG 59.444 47.826 0.00 0.00 39.84 2.67
28 29 3.793559 CCCGAGTTTATCTCCAACGAAT 58.206 45.455 0.00 0.00 39.84 3.34
29 30 2.675889 GCCCGAGTTTATCTCCAACGAA 60.676 50.000 0.00 0.00 39.84 3.85
30 31 1.134907 GCCCGAGTTTATCTCCAACGA 60.135 52.381 0.00 0.00 39.84 3.85
31 32 1.287425 GCCCGAGTTTATCTCCAACG 58.713 55.000 0.00 0.00 39.84 4.10
32 33 2.396590 TGCCCGAGTTTATCTCCAAC 57.603 50.000 0.00 0.00 39.84 3.77
33 34 2.421388 CCATGCCCGAGTTTATCTCCAA 60.421 50.000 0.00 0.00 39.84 3.53
34 35 1.140852 CCATGCCCGAGTTTATCTCCA 59.859 52.381 0.00 0.00 39.84 3.86
35 36 1.543429 CCCATGCCCGAGTTTATCTCC 60.543 57.143 0.00 0.00 39.84 3.71
36 37 1.884235 CCCATGCCCGAGTTTATCTC 58.116 55.000 0.00 0.00 39.62 2.75
37 38 0.179018 GCCCATGCCCGAGTTTATCT 60.179 55.000 0.00 0.00 0.00 1.98
38 39 0.465460 TGCCCATGCCCGAGTTTATC 60.465 55.000 0.00 0.00 36.33 1.75
39 40 0.466189 CTGCCCATGCCCGAGTTTAT 60.466 55.000 0.00 0.00 36.33 1.40
40 41 1.077787 CTGCCCATGCCCGAGTTTA 60.078 57.895 0.00 0.00 36.33 2.01
41 42 2.361610 CTGCCCATGCCCGAGTTT 60.362 61.111 0.00 0.00 36.33 2.66
67 68 4.685467 TTTTCGGGCCGGGTCGTC 62.685 66.667 27.98 0.00 0.00 4.20
68 69 3.556298 ATTTTTCGGGCCGGGTCGT 62.556 57.895 27.98 7.18 0.00 4.34
69 70 2.748647 ATTTTTCGGGCCGGGTCG 60.749 61.111 27.98 1.04 0.00 4.79
70 71 2.412323 GGATTTTTCGGGCCGGGTC 61.412 63.158 27.98 15.89 0.00 4.46
71 72 2.361992 GGATTTTTCGGGCCGGGT 60.362 61.111 27.98 7.64 0.00 5.28
72 73 3.514362 CGGATTTTTCGGGCCGGG 61.514 66.667 27.98 0.00 40.08 5.73
98 99 2.046314 AATGTCAAGCCCGACCCG 60.046 61.111 0.97 0.00 34.88 5.28
99 100 1.002624 TGAATGTCAAGCCCGACCC 60.003 57.895 0.97 0.00 34.88 4.46
100 101 1.026718 CCTGAATGTCAAGCCCGACC 61.027 60.000 0.97 0.00 34.88 4.79
101 102 1.648467 GCCTGAATGTCAAGCCCGAC 61.648 60.000 0.00 0.00 36.40 4.79
102 103 1.377202 GCCTGAATGTCAAGCCCGA 60.377 57.895 0.00 0.00 27.82 5.14
103 104 2.409870 GGCCTGAATGTCAAGCCCG 61.410 63.158 6.61 0.00 45.87 6.13
104 105 3.608432 GGCCTGAATGTCAAGCCC 58.392 61.111 6.61 0.00 45.87 5.19
106 107 2.409870 CCCGGCCTGAATGTCAAGC 61.410 63.158 0.00 0.00 33.23 4.01
107 108 2.409870 GCCCGGCCTGAATGTCAAG 61.410 63.158 0.00 0.00 0.00 3.02
108 109 2.361104 GCCCGGCCTGAATGTCAA 60.361 61.111 0.00 0.00 0.00 3.18
109 110 3.329542 GAGCCCGGCCTGAATGTCA 62.330 63.158 5.55 0.00 0.00 3.58
110 111 2.514824 GAGCCCGGCCTGAATGTC 60.515 66.667 5.55 0.00 0.00 3.06
111 112 4.473520 CGAGCCCGGCCTGAATGT 62.474 66.667 5.55 0.00 0.00 2.71
121 122 2.561037 AAAACAAAGCCCGAGCCCG 61.561 57.895 0.00 0.00 41.25 6.13
122 123 1.006220 CAAAACAAAGCCCGAGCCC 60.006 57.895 0.00 0.00 41.25 5.19
123 124 1.664649 GCAAAACAAAGCCCGAGCC 60.665 57.895 0.00 0.00 41.25 4.70
124 125 0.940991 CTGCAAAACAAAGCCCGAGC 60.941 55.000 0.00 0.00 40.32 5.03
125 126 0.940991 GCTGCAAAACAAAGCCCGAG 60.941 55.000 0.00 0.00 0.00 4.63
126 127 1.067250 GCTGCAAAACAAAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
127 128 3.628958 GCTGCAAAACAAAGCCCG 58.371 55.556 0.00 0.00 0.00 6.13
130 131 1.377536 TTTGGGCTGCAAAACAAAGC 58.622 45.000 0.50 0.00 36.17 3.51
131 132 3.269178 TCTTTTGGGCTGCAAAACAAAG 58.731 40.909 0.50 2.71 34.69 2.77
132 133 3.340814 TCTTTTGGGCTGCAAAACAAA 57.659 38.095 0.50 4.59 0.00 2.83
133 134 3.557228 ATCTTTTGGGCTGCAAAACAA 57.443 38.095 0.50 0.00 0.00 2.83
134 135 4.679373 TTATCTTTTGGGCTGCAAAACA 57.321 36.364 0.50 0.00 0.00 2.83
135 136 5.163963 CGAATTATCTTTTGGGCTGCAAAAC 60.164 40.000 0.50 0.00 0.00 2.43
136 137 4.928615 CGAATTATCTTTTGGGCTGCAAAA 59.071 37.500 0.50 0.00 0.00 2.44
137 138 4.493547 CGAATTATCTTTTGGGCTGCAAA 58.506 39.130 0.50 0.00 0.00 3.68
138 139 3.119173 CCGAATTATCTTTTGGGCTGCAA 60.119 43.478 0.50 0.00 0.00 4.08
139 140 2.426738 CCGAATTATCTTTTGGGCTGCA 59.573 45.455 0.50 0.00 0.00 4.41
140 141 2.223805 CCCGAATTATCTTTTGGGCTGC 60.224 50.000 0.00 0.00 42.22 5.25
141 142 3.715628 CCCGAATTATCTTTTGGGCTG 57.284 47.619 0.00 0.00 42.22 4.85
145 146 1.336755 CCGGCCCGAATTATCTTTTGG 59.663 52.381 3.71 0.00 0.00 3.28
146 147 1.336755 CCCGGCCCGAATTATCTTTTG 59.663 52.381 3.71 0.00 0.00 2.44
147 148 1.687563 CCCGGCCCGAATTATCTTTT 58.312 50.000 3.71 0.00 0.00 2.27
148 149 0.822121 GCCCGGCCCGAATTATCTTT 60.822 55.000 3.71 0.00 0.00 2.52
149 150 1.228154 GCCCGGCCCGAATTATCTT 60.228 57.895 3.71 0.00 0.00 2.40
150 151 1.705997 AAGCCCGGCCCGAATTATCT 61.706 55.000 3.71 0.00 0.00 1.98
151 152 1.228154 AAGCCCGGCCCGAATTATC 60.228 57.895 3.71 0.00 0.00 1.75
152 153 1.528309 CAAGCCCGGCCCGAATTAT 60.528 57.895 3.71 0.00 0.00 1.28
153 154 2.124487 CAAGCCCGGCCCGAATTA 60.124 61.111 3.71 0.00 0.00 1.40
162 163 1.543944 AAATTGAAGCCCAAGCCCGG 61.544 55.000 0.00 0.00 41.25 5.73
163 164 0.321346 AAAATTGAAGCCCAAGCCCG 59.679 50.000 0.00 0.00 41.25 6.13
164 165 2.038952 AGAAAAATTGAAGCCCAAGCCC 59.961 45.455 0.00 0.00 41.25 5.19
165 166 3.069289 CAGAAAAATTGAAGCCCAAGCC 58.931 45.455 0.00 0.00 41.25 4.35
166 167 3.732212 ACAGAAAAATTGAAGCCCAAGC 58.268 40.909 0.00 0.00 38.31 4.01
167 168 7.148755 CGAAATACAGAAAAATTGAAGCCCAAG 60.149 37.037 0.00 0.00 38.31 3.61
168 169 6.644592 CGAAATACAGAAAAATTGAAGCCCAA 59.355 34.615 0.00 0.00 39.41 4.12
169 170 6.155827 CGAAATACAGAAAAATTGAAGCCCA 58.844 36.000 0.00 0.00 0.00 5.36
170 171 5.576774 CCGAAATACAGAAAAATTGAAGCCC 59.423 40.000 0.00 0.00 0.00 5.19
171 172 5.576774 CCCGAAATACAGAAAAATTGAAGCC 59.423 40.000 0.00 0.00 0.00 4.35
172 173 5.062183 GCCCGAAATACAGAAAAATTGAAGC 59.938 40.000 0.00 0.00 0.00 3.86
173 174 5.576774 GGCCCGAAATACAGAAAAATTGAAG 59.423 40.000 0.00 0.00 0.00 3.02
174 175 5.474825 GGCCCGAAATACAGAAAAATTGAA 58.525 37.500 0.00 0.00 0.00 2.69
175 176 4.380023 CGGCCCGAAATACAGAAAAATTGA 60.380 41.667 0.00 0.00 0.00 2.57
176 177 3.857093 CGGCCCGAAATACAGAAAAATTG 59.143 43.478 0.00 0.00 0.00 2.32
177 178 3.119280 CCGGCCCGAAATACAGAAAAATT 60.119 43.478 3.71 0.00 0.00 1.82
178 179 2.425668 CCGGCCCGAAATACAGAAAAAT 59.574 45.455 3.71 0.00 0.00 1.82
179 180 1.813786 CCGGCCCGAAATACAGAAAAA 59.186 47.619 3.71 0.00 0.00 1.94
180 181 1.455248 CCGGCCCGAAATACAGAAAA 58.545 50.000 3.71 0.00 0.00 2.29
181 182 0.393267 CCCGGCCCGAAATACAGAAA 60.393 55.000 3.71 0.00 0.00 2.52
182 183 1.222387 CCCGGCCCGAAATACAGAA 59.778 57.895 3.71 0.00 0.00 3.02
183 184 2.904905 CCCGGCCCGAAATACAGA 59.095 61.111 3.71 0.00 0.00 3.41
184 185 2.886730 AAGCCCGGCCCGAAATACAG 62.887 60.000 3.71 0.00 0.00 2.74
185 186 2.974041 AAGCCCGGCCCGAAATACA 61.974 57.895 3.71 0.00 0.00 2.29
186 187 2.124445 AAGCCCGGCCCGAAATAC 60.124 61.111 3.71 0.00 0.00 1.89
187 188 2.124487 CAAGCCCGGCCCGAAATA 60.124 61.111 3.71 0.00 0.00 1.40
220 221 1.663173 CGGCCCGGATGTTGTTTTT 59.337 52.632 0.73 0.00 0.00 1.94
221 222 3.361174 CGGCCCGGATGTTGTTTT 58.639 55.556 0.73 0.00 0.00 2.43
235 236 4.760047 TCAAGCTCGAAGCCCGGC 62.760 66.667 0.00 0.00 43.77 6.13
236 237 1.026718 AAATCAAGCTCGAAGCCCGG 61.027 55.000 0.00 0.00 43.77 5.73
237 238 0.375106 GAAATCAAGCTCGAAGCCCG 59.625 55.000 0.00 0.00 43.77 6.13
238 239 0.375106 CGAAATCAAGCTCGAAGCCC 59.625 55.000 0.00 0.00 43.77 5.19
239 240 0.375106 CCGAAATCAAGCTCGAAGCC 59.625 55.000 0.00 0.00 43.77 4.35
240 241 0.375106 CCCGAAATCAAGCTCGAAGC 59.625 55.000 0.00 0.00 42.84 3.86
241 242 0.375106 GCCCGAAATCAAGCTCGAAG 59.625 55.000 0.00 0.00 37.23 3.79
242 243 1.024579 GGCCCGAAATCAAGCTCGAA 61.025 55.000 0.00 0.00 37.23 3.71
243 244 1.449601 GGCCCGAAATCAAGCTCGA 60.450 57.895 0.00 0.00 37.23 4.04
244 245 2.813179 CGGCCCGAAATCAAGCTCG 61.813 63.158 0.00 0.00 34.83 5.03
245 246 2.472909 CCGGCCCGAAATCAAGCTC 61.473 63.158 3.71 0.00 0.00 4.09
246 247 2.438434 CCGGCCCGAAATCAAGCT 60.438 61.111 3.71 0.00 0.00 3.74
247 248 3.518068 CCCGGCCCGAAATCAAGC 61.518 66.667 3.71 0.00 0.00 4.01
248 249 3.518068 GCCCGGCCCGAAATCAAG 61.518 66.667 3.71 0.00 0.00 3.02
249 250 3.987954 GAGCCCGGCCCGAAATCAA 62.988 63.158 3.71 0.00 0.00 2.57
250 251 4.483243 GAGCCCGGCCCGAAATCA 62.483 66.667 3.71 0.00 0.00 2.57
251 252 4.483243 TGAGCCCGGCCCGAAATC 62.483 66.667 3.71 0.00 0.00 2.17
252 253 4.489771 CTGAGCCCGGCCCGAAAT 62.490 66.667 3.71 0.00 0.00 2.17
260 261 1.603455 TTTTCAAGCCTGAGCCCGG 60.603 57.895 0.00 0.00 41.25 5.73
261 262 1.172180 TGTTTTCAAGCCTGAGCCCG 61.172 55.000 0.00 0.00 41.25 6.13
262 263 0.600057 CTGTTTTCAAGCCTGAGCCC 59.400 55.000 0.00 0.00 41.25 5.19
263 264 0.600057 CCTGTTTTCAAGCCTGAGCC 59.400 55.000 0.00 0.00 41.25 4.70
264 265 0.600057 CCCTGTTTTCAAGCCTGAGC 59.400 55.000 0.00 0.00 40.32 4.26
265 266 2.157738 CTCCCTGTTTTCAAGCCTGAG 58.842 52.381 0.00 0.00 31.69 3.35
266 267 1.494721 ACTCCCTGTTTTCAAGCCTGA 59.505 47.619 0.00 0.00 0.00 3.86
267 268 1.986882 ACTCCCTGTTTTCAAGCCTG 58.013 50.000 0.00 0.00 0.00 4.85
268 269 4.388577 AATACTCCCTGTTTTCAAGCCT 57.611 40.909 0.00 0.00 0.00 4.58
269 270 4.522789 TGAAATACTCCCTGTTTTCAAGCC 59.477 41.667 0.00 0.00 35.21 4.35
270 271 5.335976 CCTGAAATACTCCCTGTTTTCAAGC 60.336 44.000 0.00 0.00 36.39 4.01
271 272 5.335976 GCCTGAAATACTCCCTGTTTTCAAG 60.336 44.000 0.00 0.00 36.39 3.02
272 273 4.522789 GCCTGAAATACTCCCTGTTTTCAA 59.477 41.667 0.00 0.00 36.39 2.69
273 274 4.079253 GCCTGAAATACTCCCTGTTTTCA 58.921 43.478 0.00 0.00 35.95 2.69
274 275 4.336280 AGCCTGAAATACTCCCTGTTTTC 58.664 43.478 0.00 0.00 0.00 2.29
275 276 4.388577 AGCCTGAAATACTCCCTGTTTT 57.611 40.909 0.00 0.00 0.00 2.43
276 277 4.336280 GAAGCCTGAAATACTCCCTGTTT 58.664 43.478 0.00 0.00 0.00 2.83
277 278 3.619979 CGAAGCCTGAAATACTCCCTGTT 60.620 47.826 0.00 0.00 0.00 3.16
278 279 2.093447 CGAAGCCTGAAATACTCCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
279 280 2.555199 CGAAGCCTGAAATACTCCCTG 58.445 52.381 0.00 0.00 0.00 4.45
280 281 1.486726 CCGAAGCCTGAAATACTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
281 282 1.475213 CCCGAAGCCTGAAATACTCCC 60.475 57.143 0.00 0.00 0.00 4.30
282 283 1.954927 CCCGAAGCCTGAAATACTCC 58.045 55.000 0.00 0.00 0.00 3.85
283 284 1.300481 GCCCGAAGCCTGAAATACTC 58.700 55.000 0.00 0.00 34.35 2.59
284 285 3.478540 GCCCGAAGCCTGAAATACT 57.521 52.632 0.00 0.00 34.35 2.12
302 303 3.567579 TTCTCAAGCCCAAGCCCGG 62.568 63.158 0.00 0.00 41.25 5.73
303 304 0.967380 ATTTCTCAAGCCCAAGCCCG 60.967 55.000 0.00 0.00 41.25 6.13
304 305 2.143876 TATTTCTCAAGCCCAAGCCC 57.856 50.000 0.00 0.00 41.25 5.19
305 306 3.118992 CCTTTATTTCTCAAGCCCAAGCC 60.119 47.826 0.00 0.00 41.25 4.35
306 307 3.511540 ACCTTTATTTCTCAAGCCCAAGC 59.488 43.478 0.00 0.00 40.32 4.01
307 308 4.142600 CGACCTTTATTTCTCAAGCCCAAG 60.143 45.833 0.00 0.00 0.00 3.61
308 309 3.756434 CGACCTTTATTTCTCAAGCCCAA 59.244 43.478 0.00 0.00 0.00 4.12
309 310 3.343617 CGACCTTTATTTCTCAAGCCCA 58.656 45.455 0.00 0.00 0.00 5.36
310 311 2.683362 CCGACCTTTATTTCTCAAGCCC 59.317 50.000 0.00 0.00 0.00 5.19
311 312 2.683362 CCCGACCTTTATTTCTCAAGCC 59.317 50.000 0.00 0.00 0.00 4.35
312 313 2.097629 GCCCGACCTTTATTTCTCAAGC 59.902 50.000 0.00 0.00 0.00 4.01
313 314 3.610911 AGCCCGACCTTTATTTCTCAAG 58.389 45.455 0.00 0.00 0.00 3.02
314 315 3.713826 AGCCCGACCTTTATTTCTCAA 57.286 42.857 0.00 0.00 0.00 3.02
315 316 3.713826 AAGCCCGACCTTTATTTCTCA 57.286 42.857 0.00 0.00 0.00 3.27
316 317 5.413523 TGTAAAAGCCCGACCTTTATTTCTC 59.586 40.000 1.56 0.00 34.12 2.87
317 318 5.318630 TGTAAAAGCCCGACCTTTATTTCT 58.681 37.500 1.56 0.00 34.12 2.52
318 319 5.632244 TGTAAAAGCCCGACCTTTATTTC 57.368 39.130 1.56 0.00 34.12 2.17
319 320 5.566032 GCTTGTAAAAGCCCGACCTTTATTT 60.566 40.000 6.34 0.00 39.81 1.40
320 321 4.082408 GCTTGTAAAAGCCCGACCTTTATT 60.082 41.667 6.34 0.00 39.81 1.40
321 322 3.442625 GCTTGTAAAAGCCCGACCTTTAT 59.557 43.478 6.34 0.00 39.81 1.40
322 323 2.815503 GCTTGTAAAAGCCCGACCTTTA 59.184 45.455 6.34 0.00 39.81 1.85
323 324 1.611977 GCTTGTAAAAGCCCGACCTTT 59.388 47.619 6.34 0.00 39.81 3.11
324 325 1.244816 GCTTGTAAAAGCCCGACCTT 58.755 50.000 6.34 0.00 39.81 3.50
325 326 2.942641 GCTTGTAAAAGCCCGACCT 58.057 52.632 6.34 0.00 39.81 3.85
332 333 1.880894 GGGTCGGGCTTGTAAAAGC 59.119 57.895 9.32 9.32 44.76 3.51
333 334 0.320946 TCGGGTCGGGCTTGTAAAAG 60.321 55.000 0.00 0.00 0.00 2.27
334 335 0.108207 TTCGGGTCGGGCTTGTAAAA 59.892 50.000 0.00 0.00 0.00 1.52
335 336 0.108207 TTTCGGGTCGGGCTTGTAAA 59.892 50.000 0.00 0.00 0.00 2.01
336 337 0.603439 GTTTCGGGTCGGGCTTGTAA 60.603 55.000 0.00 0.00 0.00 2.41
337 338 1.004679 GTTTCGGGTCGGGCTTGTA 60.005 57.895 0.00 0.00 0.00 2.41
338 339 2.281276 GTTTCGGGTCGGGCTTGT 60.281 61.111 0.00 0.00 0.00 3.16
339 340 3.053896 GGTTTCGGGTCGGGCTTG 61.054 66.667 0.00 0.00 0.00 4.01
340 341 4.340246 GGGTTTCGGGTCGGGCTT 62.340 66.667 0.00 0.00 0.00 4.35
367 368 1.903783 CTAAACCCGGGCAAACGTCG 61.904 60.000 24.08 0.00 0.00 5.12
368 369 0.886043 ACTAAACCCGGGCAAACGTC 60.886 55.000 24.08 0.00 0.00 4.34
369 370 0.466007 AACTAAACCCGGGCAAACGT 60.466 50.000 24.08 8.96 0.00 3.99
370 371 0.039888 CAACTAAACCCGGGCAAACG 60.040 55.000 24.08 8.22 0.00 3.60
371 372 0.315886 CCAACTAAACCCGGGCAAAC 59.684 55.000 24.08 0.00 0.00 2.93
372 373 0.185416 TCCAACTAAACCCGGGCAAA 59.815 50.000 24.08 4.44 0.00 3.68
373 374 0.250989 CTCCAACTAAACCCGGGCAA 60.251 55.000 24.08 4.88 0.00 4.52
374 375 1.128809 TCTCCAACTAAACCCGGGCA 61.129 55.000 24.08 4.89 0.00 5.36
375 376 0.255033 ATCTCCAACTAAACCCGGGC 59.745 55.000 24.08 0.00 0.00 6.13
376 377 2.017113 GCATCTCCAACTAAACCCGGG 61.017 57.143 22.25 22.25 0.00 5.73
377 378 1.065418 AGCATCTCCAACTAAACCCGG 60.065 52.381 0.00 0.00 0.00 5.73
378 379 2.280628 GAGCATCTCCAACTAAACCCG 58.719 52.381 0.00 0.00 0.00 5.28
407 408 9.008584 AGGAAAAGAAGTTAGGAATGGAGATAT 57.991 33.333 0.00 0.00 0.00 1.63
440 441 1.300697 GTCCCATATCGCCCGTGTC 60.301 63.158 0.00 0.00 0.00 3.67
441 442 1.407656 ATGTCCCATATCGCCCGTGT 61.408 55.000 0.00 0.00 0.00 4.49
442 443 0.950555 CATGTCCCATATCGCCCGTG 60.951 60.000 0.00 0.00 0.00 4.94
455 457 1.799181 CGTCGATGTCTCCACATGTCC 60.799 57.143 0.00 0.00 43.79 4.02
501 503 3.270027 TGGTTGCTCATGGTAGATTTCG 58.730 45.455 0.00 0.00 0.00 3.46
502 504 3.629398 CCTGGTTGCTCATGGTAGATTTC 59.371 47.826 0.00 0.00 0.00 2.17
510 512 2.757099 GGGCCTGGTTGCTCATGG 60.757 66.667 0.84 0.00 0.00 3.66
529 532 2.096442 GCGAGGCCAGCAAAAATGC 61.096 57.895 16.97 0.00 34.19 3.56
545 548 0.107456 ATACATCCCTCCAAGCTGCG 59.893 55.000 0.00 0.00 0.00 5.18
549 552 5.063880 ACGATAAAATACATCCCTCCAAGC 58.936 41.667 0.00 0.00 0.00 4.01
581 584 6.206048 CCATCAATTCTTGTAGCATATGCAGA 59.794 38.462 28.62 19.07 45.16 4.26
582 585 6.379386 CCATCAATTCTTGTAGCATATGCAG 58.621 40.000 28.62 17.12 45.16 4.41
595 599 4.132122 AGTTTGGGACCCATCAATTCTT 57.868 40.909 15.83 0.00 31.53 2.52
620 903 1.153489 GCTCTCATTCGCAGGCTCA 60.153 57.895 0.00 0.00 0.00 4.26
656 939 0.106619 AAAGTGTGGGTTTACGGCCA 60.107 50.000 2.24 0.00 0.00 5.36
680 963 1.070041 GGATAGATCGACCGACACGTC 60.070 57.143 0.00 0.00 0.00 4.34
681 964 0.942962 GGATAGATCGACCGACACGT 59.057 55.000 0.00 0.00 0.00 4.49
682 965 3.749936 GGATAGATCGACCGACACG 57.250 57.895 0.00 0.00 0.00 4.49
688 971 1.198178 GAGACTGCGGATAGATCGACC 59.802 57.143 0.00 0.00 0.00 4.79
689 972 1.136197 CGAGACTGCGGATAGATCGAC 60.136 57.143 0.00 0.00 34.64 4.20
690 973 1.149148 CGAGACTGCGGATAGATCGA 58.851 55.000 0.00 0.00 34.64 3.59
691 974 1.136197 GTCGAGACTGCGGATAGATCG 60.136 57.143 0.00 1.43 34.30 3.69
692 975 1.874231 TGTCGAGACTGCGGATAGATC 59.126 52.381 0.00 0.00 0.00 2.75
693 976 1.604755 GTGTCGAGACTGCGGATAGAT 59.395 52.381 5.28 0.00 0.00 1.98
694 977 1.015109 GTGTCGAGACTGCGGATAGA 58.985 55.000 5.28 0.00 0.00 1.98
696 979 1.381928 GGGTGTCGAGACTGCGGATA 61.382 60.000 12.92 0.00 0.00 2.59
697 980 2.711922 GGGTGTCGAGACTGCGGAT 61.712 63.158 12.92 0.00 0.00 4.18
698 981 3.371063 GGGTGTCGAGACTGCGGA 61.371 66.667 12.92 0.00 0.00 5.54
699 982 4.436998 GGGGTGTCGAGACTGCGG 62.437 72.222 12.92 0.00 0.00 5.69
700 983 3.374402 AGGGGTGTCGAGACTGCG 61.374 66.667 12.92 0.00 0.00 5.18
701 984 2.262915 CAGGGGTGTCGAGACTGC 59.737 66.667 12.92 0.00 0.00 4.40
702 985 2.262915 GCAGGGGTGTCGAGACTG 59.737 66.667 12.92 4.42 0.00 3.51
703 986 2.997897 GGCAGGGGTGTCGAGACT 60.998 66.667 12.92 0.00 0.00 3.24
704 987 2.579684 GATGGCAGGGGTGTCGAGAC 62.580 65.000 3.66 3.66 0.00 3.36
705 988 2.284625 ATGGCAGGGGTGTCGAGA 60.285 61.111 0.00 0.00 0.00 4.04
706 989 2.187946 GATGGCAGGGGTGTCGAG 59.812 66.667 0.00 0.00 0.00 4.04
707 990 3.399181 GGATGGCAGGGGTGTCGA 61.399 66.667 0.00 0.00 0.00 4.20
708 991 3.391665 GAGGATGGCAGGGGTGTCG 62.392 68.421 0.00 0.00 0.00 4.35
709 992 1.852157 TTGAGGATGGCAGGGGTGTC 61.852 60.000 0.00 0.00 0.00 3.67
710 993 1.217057 ATTGAGGATGGCAGGGGTGT 61.217 55.000 0.00 0.00 0.00 4.16
711 994 0.466922 GATTGAGGATGGCAGGGGTG 60.467 60.000 0.00 0.00 0.00 4.61
712 995 0.920763 TGATTGAGGATGGCAGGGGT 60.921 55.000 0.00 0.00 0.00 4.95
841 1135 0.498927 GTGCGCGACGAGCTAATTAG 59.501 55.000 23.73 8.20 45.59 1.73
846 1140 2.202440 GAAGTGCGCGACGAGCTA 60.202 61.111 23.73 8.23 45.59 3.32
942 1255 1.202952 GGCGAGGAGGGATTCTCTCTA 60.203 57.143 13.20 0.00 42.10 2.43
1416 1758 1.145819 GGTGAGGGAGATGAGCTGC 59.854 63.158 0.00 0.00 0.00 5.25
1417 1759 0.752054 GAGGTGAGGGAGATGAGCTG 59.248 60.000 0.00 0.00 0.00 4.24
1704 2046 7.946207 TGCCAAAAACTGATAGTAATGTTGAA 58.054 30.769 0.00 0.00 0.00 2.69
1706 2048 8.761575 ATTGCCAAAAACTGATAGTAATGTTG 57.238 30.769 0.00 0.00 0.00 3.33
1714 2056 4.858692 CACGGAATTGCCAAAAACTGATAG 59.141 41.667 0.00 0.00 35.94 2.08
1841 2185 1.729517 TCATGCGTACACCATTTCACG 59.270 47.619 0.00 0.00 37.45 4.35
2004 2362 4.385358 TCTGTTGCGAAGTATCTATGCA 57.615 40.909 0.00 0.00 0.00 3.96
2115 2548 4.024893 CCGCATCATGTGTACAGTATTTCC 60.025 45.833 0.00 0.00 0.00 3.13
2121 2554 0.036483 TGCCGCATCATGTGTACAGT 60.036 50.000 0.00 0.00 0.00 3.55
2147 2580 5.240623 GTGACAGGGTTGTGAAATCATAACA 59.759 40.000 20.02 1.39 45.81 2.41
2163 2596 4.220693 TGTTGAATGGATAGTGACAGGG 57.779 45.455 0.00 0.00 0.00 4.45
2164 2597 5.678583 AGATGTTGAATGGATAGTGACAGG 58.321 41.667 0.00 0.00 0.00 4.00
2203 2636 6.487689 AATAAAAGAGAAGGCGACAAGAAG 57.512 37.500 0.00 0.00 0.00 2.85
2212 2645 7.554476 AGAGGTGTCATAAATAAAAGAGAAGGC 59.446 37.037 0.00 0.00 0.00 4.35
2253 2686 1.645034 CCTATCAACAGCAGACCACG 58.355 55.000 0.00 0.00 0.00 4.94
2273 2706 5.066375 TCTGATGAACACAAGTGGAAAACAG 59.934 40.000 5.08 8.39 34.19 3.16
2274 2707 4.946772 TCTGATGAACACAAGTGGAAAACA 59.053 37.500 5.08 0.00 34.19 2.83
2276 2709 7.815840 TTATCTGATGAACACAAGTGGAAAA 57.184 32.000 5.08 0.00 34.19 2.29
2280 2713 6.990341 TCATTATCTGATGAACACAAGTGG 57.010 37.500 5.08 0.00 33.31 4.00
2301 2734 7.254761 CGCTAAATATGTGCCAAAGTATCTTCA 60.255 37.037 0.00 0.00 0.00 3.02
2302 2735 7.072030 CGCTAAATATGTGCCAAAGTATCTTC 58.928 38.462 0.00 0.00 0.00 2.87
2305 2738 6.300354 ACGCTAAATATGTGCCAAAGTATC 57.700 37.500 0.00 0.00 0.00 2.24
2324 2757 7.279981 TGTTTAGCATGATTCTATTGTTACGCT 59.720 33.333 0.00 0.00 0.00 5.07
2481 2914 7.223777 TGGTGCTAATAGTTTTTCAAACTTTGC 59.776 33.333 7.17 4.42 0.00 3.68
2529 2962 2.159572 CGTTTCTGGCCAAAGGAATACG 60.160 50.000 7.01 14.61 0.00 3.06
2535 2968 1.266989 GTTCTCGTTTCTGGCCAAAGG 59.733 52.381 7.01 5.09 0.00 3.11
2682 3116 7.361971 GGGAAATTTTGCAGGTTATGATTTTGG 60.362 37.037 2.98 0.00 0.00 3.28
2703 3137 2.378547 ACATCCTTAACCTGCAGGGAAA 59.621 45.455 35.42 25.78 40.27 3.13
2705 3139 1.559682 GACATCCTTAACCTGCAGGGA 59.440 52.381 35.42 22.69 40.27 4.20
2843 3277 2.157668 CGTCGGTGAAAGTTCCAATCAG 59.842 50.000 0.00 0.00 0.00 2.90
2978 3412 5.772393 TTTCCAAATCCTGCCTCTACTAA 57.228 39.130 0.00 0.00 0.00 2.24
2987 3421 3.306294 CCAGAAGGTTTTCCAAATCCTGC 60.306 47.826 2.96 1.57 43.73 4.85
3003 3437 6.639632 TTTTCCAGAGAATTGTTCCAGAAG 57.360 37.500 0.00 0.00 0.00 2.85
3004 3438 6.015180 CCATTTTCCAGAGAATTGTTCCAGAA 60.015 38.462 0.00 0.00 0.00 3.02
3012 3446 7.550196 CCCATTTTACCATTTTCCAGAGAATTG 59.450 37.037 0.00 0.00 0.00 2.32
3016 3450 4.466015 GCCCATTTTACCATTTTCCAGAGA 59.534 41.667 0.00 0.00 0.00 3.10
3034 3468 1.196911 CCATGGATGTTGTTGCCCAT 58.803 50.000 5.56 0.00 39.80 4.00
3082 3516 7.301868 TCAAAAGGTTCTTTATGCCAAAGAT 57.698 32.000 10.42 0.00 36.30 2.40
3098 3532 7.706607 GCTTAACTTCATCTTGTTTCAAAAGGT 59.293 33.333 0.00 0.00 0.00 3.50
3149 3583 8.126700 GGAAAGAAACAAACGTCTCTTTTCATA 58.873 33.333 11.94 0.00 38.05 2.15
3162 3596 3.692791 ACAGCGAGGAAAGAAACAAAC 57.307 42.857 0.00 0.00 0.00 2.93
3390 4018 7.004086 ACCAAAGATTCAACTAGAATGACCAA 58.996 34.615 0.00 0.00 46.76 3.67
3425 4053 2.036217 CCATTGCTGGCAGAAAGTTCAA 59.964 45.455 20.86 11.95 35.23 2.69
3438 4066 1.270550 GGTGGAAGACAACCATTGCTG 59.729 52.381 0.00 0.00 39.69 4.41
3439 4067 1.145738 AGGTGGAAGACAACCATTGCT 59.854 47.619 0.00 0.00 37.57 3.91
3481 4109 4.196193 TGGGGCATCAGATTACTTTAACG 58.804 43.478 0.00 0.00 0.00 3.18
3560 4204 5.281314 ACAATACCCTCTGTTACCAGATCT 58.719 41.667 0.00 0.00 46.38 2.75
3561 4205 5.615925 ACAATACCCTCTGTTACCAGATC 57.384 43.478 0.00 0.00 46.38 2.75
3562 4206 5.250774 ACAACAATACCCTCTGTTACCAGAT 59.749 40.000 0.00 0.00 46.38 2.90
3858 4503 1.600636 CAGTGCGGGGTCATTGTGT 60.601 57.895 0.00 0.00 0.00 3.72
3860 4505 1.600636 CACAGTGCGGGGTCATTGT 60.601 57.895 0.00 0.00 37.39 2.71
3881 4526 4.232221 CAAAATGCGCTTGAGAAACAGAT 58.768 39.130 9.73 0.00 0.00 2.90
3911 4558 6.418101 TCTGGATCTTGAGGGAAACTTAATG 58.582 40.000 0.00 0.00 0.00 1.90
3987 4634 7.891561 TGGTTTGGGTTGATTCAGTTTTATAG 58.108 34.615 0.00 0.00 0.00 1.31
4008 4655 5.817296 GCAAAAGAACAGAAGGAAATTGGTT 59.183 36.000 0.00 0.00 0.00 3.67
4035 4682 6.883756 TCATATCAAGCATACCAACAGAACAA 59.116 34.615 0.00 0.00 0.00 2.83
4065 4712 1.580059 CCTGTTAGTGAAGGGGGCTA 58.420 55.000 0.00 0.00 0.00 3.93
4086 4733 3.760684 GGTTCCTGAAAGATGTCAAGCAT 59.239 43.478 0.00 0.00 41.24 3.79
4095 4742 2.716424 TGTCCTTGGGTTCCTGAAAGAT 59.284 45.455 0.00 0.00 34.07 2.40
4224 4871 2.825532 GACCAACCCATGCAGTGTAATT 59.174 45.455 0.00 0.00 0.00 1.40
4265 4912 0.947244 GACAGGCCACACACAAAGAG 59.053 55.000 5.01 0.00 0.00 2.85
4277 4924 1.971695 CAAAGAACCGGGACAGGCC 60.972 63.158 6.32 0.00 33.69 5.19
4286 4933 2.459934 GCAAAGAACCACAAAGAACCG 58.540 47.619 0.00 0.00 0.00 4.44
4356 5003 3.801698 ACAACAGCGATAAGATGATGCT 58.198 40.909 0.00 0.00 41.84 3.79
4357 5004 4.376819 GCTACAACAGCGATAAGATGATGC 60.377 45.833 0.00 0.00 41.84 3.91
4423 5070 2.054799 GGCTATGGGGTGATGAGGTAA 58.945 52.381 0.00 0.00 0.00 2.85
4458 5109 6.986817 ACGATTCCACATATTCCTCTAACAAG 59.013 38.462 0.00 0.00 0.00 3.16
4482 5134 2.182014 GCTTGAACAACCAACGAACAC 58.818 47.619 0.00 0.00 0.00 3.32
4502 5154 6.192234 AGATTTATTTGACTTGCAGCTCTG 57.808 37.500 0.00 0.00 0.00 3.35
4503 5155 6.830873 AAGATTTATTTGACTTGCAGCTCT 57.169 33.333 0.00 0.00 0.00 4.09
4509 5161 9.677567 TGACAACTTAAGATTTATTTGACTTGC 57.322 29.630 10.09 0.00 0.00 4.01
4583 5240 3.788227 ATCTGCCACAAACTGGAGTTA 57.212 42.857 0.00 0.00 43.95 2.24
4584 5241 2.664402 ATCTGCCACAAACTGGAGTT 57.336 45.000 0.00 0.00 43.95 3.01
4590 5247 3.638160 ACATCACAAATCTGCCACAAACT 59.362 39.130 0.00 0.00 0.00 2.66
4611 5268 5.221126 GGATGCTTGGGAGTCATTTGAATAC 60.221 44.000 0.00 0.00 0.00 1.89
4664 5321 2.637382 TGTCCTCAGTGGCTGTTCAATA 59.363 45.455 0.00 0.00 35.26 1.90
4708 5365 5.791336 TCATGGCGAATGTCTATTCTAGT 57.209 39.130 0.00 0.00 40.43 2.57
4736 5393 0.577269 GTGTCTGTTCAGTGCACGTC 59.423 55.000 12.01 4.05 0.00 4.34
4816 5474 6.877611 TTGTGATCAAACTAGGGAACTTTC 57.122 37.500 0.00 0.00 43.67 2.62
4969 5630 1.079127 GCAAGCCTAGGTTCGAGCA 60.079 57.895 11.31 0.00 0.00 4.26
5111 5772 9.740239 TCTCTATGATTACGTTACATGTAAACC 57.260 33.333 19.63 7.89 33.75 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.