Multiple sequence alignment - TraesCS6D01G119800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G119800 chr6D 100.000 3524 0 0 1 3524 84679331 84675808 0.000000e+00 6508.0
1 TraesCS6D01G119800 chr6D 90.608 1874 111 33 1 1846 85553008 85554844 0.000000e+00 2425.0
2 TraesCS6D01G119800 chr6D 91.989 749 39 9 1885 2633 85554845 85555572 0.000000e+00 1031.0
3 TraesCS6D01G119800 chr6D 78.546 564 116 4 1916 2475 430243630 430243068 2.000000e-97 366.0
4 TraesCS6D01G119800 chr6D 84.028 144 21 2 2333 2475 430367476 430367618 1.710000e-28 137.0
5 TraesCS6D01G119800 chr6B 92.964 1876 97 16 765 2633 161344262 161342415 0.000000e+00 2700.0
6 TraesCS6D01G119800 chr6B 78.971 447 58 10 7 449 161345644 161345230 4.480000e-69 272.0
7 TraesCS6D01G119800 chr6B 91.011 89 7 1 2694 2782 560797944 560797857 6.180000e-23 119.0
8 TraesCS6D01G119800 chr6B 87.255 102 12 1 2690 2790 267328800 267328901 7.990000e-22 115.0
9 TraesCS6D01G119800 chr6B 85.714 112 12 3 2698 2807 457422092 457422201 7.990000e-22 115.0
10 TraesCS6D01G119800 chr6A 92.742 1860 102 19 786 2633 101897001 101895163 0.000000e+00 2656.0
11 TraesCS6D01G119800 chr6A 93.655 788 40 7 1 784 101903157 101902376 0.000000e+00 1170.0
12 TraesCS6D01G119800 chr6A 86.747 332 28 7 1578 1905 215047251 215047570 4.330000e-94 355.0
13 TraesCS6D01G119800 chr6A 89.513 267 22 6 2781 3045 7128045 7127783 2.030000e-87 333.0
14 TraesCS6D01G119800 chr6A 89.815 108 10 1 1309 1416 215047139 215047245 1.710000e-28 137.0
15 TraesCS6D01G119800 chr6A 92.045 88 7 0 2695 2782 103761897 103761984 1.330000e-24 124.0
16 TraesCS6D01G119800 chr7B 93.169 366 22 3 2781 3143 733313211 733313576 5.180000e-148 534.0
17 TraesCS6D01G119800 chr7B 92.833 293 19 2 2792 3083 687481185 687481476 1.170000e-114 424.0
18 TraesCS6D01G119800 chr7B 89.778 225 21 2 3248 3471 687540214 687540437 1.600000e-73 287.0
19 TraesCS6D01G119800 chr7B 90.244 82 7 1 2358 2439 353631174 353631254 4.810000e-19 106.0
20 TraesCS6D01G119800 chr7B 96.429 56 2 0 3469 3524 687544910 687544965 3.750000e-15 93.5
21 TraesCS6D01G119800 chr1D 93.333 360 21 3 2787 3143 19904525 19904884 2.410000e-146 529.0
22 TraesCS6D01G119800 chr1D 81.871 342 35 17 2822 3147 367146811 367146481 2.700000e-66 263.0
23 TraesCS6D01G119800 chr1D 88.889 99 9 1 2698 2796 455776729 455776633 1.720000e-23 121.0
24 TraesCS6D01G119800 chr5A 91.690 361 24 5 2781 3139 316509256 316508900 2.440000e-136 496.0
25 TraesCS6D01G119800 chr5A 82.594 293 33 9 2963 3242 331104757 331105044 3.510000e-60 243.0
26 TraesCS6D01G119800 chr5A 83.505 194 20 7 3249 3430 331105148 331105341 1.680000e-38 171.0
27 TraesCS6D01G119800 chr5A 89.247 93 10 0 2697 2789 458337343 458337251 2.220000e-22 117.0
28 TraesCS6D01G119800 chr7A 90.083 363 18 10 2787 3143 6154286 6153936 4.150000e-124 455.0
29 TraesCS6D01G119800 chr7A 90.083 363 18 10 2787 3143 6233290 6232940 4.150000e-124 455.0
30 TraesCS6D01G119800 chr5B 79.323 561 111 4 1917 2476 609690575 609691131 4.270000e-104 388.0
31 TraesCS6D01G119800 chr1B 84.118 340 36 13 2822 3147 491395957 491395622 2.640000e-81 313.0
32 TraesCS6D01G119800 chr1B 91.111 90 8 0 2693 2782 328029463 328029552 4.780000e-24 122.0
33 TraesCS6D01G119800 chr3D 88.506 261 23 6 2791 3046 558744482 558744740 3.420000e-80 309.0
34 TraesCS6D01G119800 chr3D 85.088 114 15 2 2363 2475 11027225 11027337 7.990000e-22 115.0
35 TraesCS6D01G119800 chr3B 88.015 267 19 11 2781 3045 104271378 104271123 1.590000e-78 303.0
36 TraesCS6D01G119800 chr3B 83.333 114 17 2 2363 2475 73077161 73077273 1.730000e-18 104.0
37 TraesCS6D01G119800 chr2B 85.870 276 24 4 2977 3240 391043782 391044054 2.680000e-71 279.0
38 TraesCS6D01G119800 chr2B 84.536 194 19 7 3248 3430 391044112 391044305 7.770000e-42 182.0
39 TraesCS6D01G119800 chr2B 88.889 99 9 2 2692 2789 395207475 395207378 1.720000e-23 121.0
40 TraesCS6D01G119800 chr3A 84.375 192 21 7 2996 3184 738077763 738077578 2.790000e-41 180.0
41 TraesCS6D01G119800 chr5D 91.860 86 7 0 2698 2783 249066213 249066128 1.720000e-23 121.0
42 TraesCS6D01G119800 chr7D 93.421 76 5 0 3109 3184 113348101 113348176 2.880000e-21 113.0
43 TraesCS6D01G119800 chr1A 100.000 29 0 0 3135 3163 447003855 447003883 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G119800 chr6D 84675808 84679331 3523 True 6508.0 6508 100.0000 1 3524 1 chr6D.!!$R1 3523
1 TraesCS6D01G119800 chr6D 85553008 85555572 2564 False 1728.0 2425 91.2985 1 2633 2 chr6D.!!$F2 2632
2 TraesCS6D01G119800 chr6D 430243068 430243630 562 True 366.0 366 78.5460 1916 2475 1 chr6D.!!$R2 559
3 TraesCS6D01G119800 chr6B 161342415 161345644 3229 True 1486.0 2700 85.9675 7 2633 2 chr6B.!!$R2 2626
4 TraesCS6D01G119800 chr6A 101895163 101897001 1838 True 2656.0 2656 92.7420 786 2633 1 chr6A.!!$R2 1847
5 TraesCS6D01G119800 chr6A 101902376 101903157 781 True 1170.0 1170 93.6550 1 784 1 chr6A.!!$R3 783
6 TraesCS6D01G119800 chr5A 331104757 331105341 584 False 207.0 243 83.0495 2963 3430 2 chr5A.!!$F1 467
7 TraesCS6D01G119800 chr5B 609690575 609691131 556 False 388.0 388 79.3230 1917 2476 1 chr5B.!!$F1 559
8 TraesCS6D01G119800 chr2B 391043782 391044305 523 False 230.5 279 85.2030 2977 3430 2 chr2B.!!$F1 453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 349 3.002862 TCCACAGTACATTTCACGCAAAC 59.997 43.478 0.00 0.0 0.00 2.93 F
1856 2607 0.670546 CCATGTCACTGACGGTCACC 60.671 60.000 6.76 0.0 34.95 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 3098 1.407989 CGACCCTACTAGGACGACCTT 60.408 57.143 12.68 0.0 45.36 3.50 R
2910 3697 0.031585 TGACTTTCCCGTCACGTCAG 59.968 55.000 0.00 0.0 38.89 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
330 349 3.002862 TCCACAGTACATTTCACGCAAAC 59.997 43.478 0.00 0.00 0.00 2.93
333 352 4.795795 CACAGTACATTTCACGCAAACAAA 59.204 37.500 0.00 0.00 0.00 2.83
672 700 8.887036 AGTTCAGGTTTTCCAAAAATATGTTC 57.113 30.769 0.00 0.00 43.73 3.18
1164 1910 3.393970 CTCTTCCGCTCCCTGCCA 61.394 66.667 0.00 0.00 38.78 4.92
1187 1933 2.504244 CCCGTTCTCTGACGTCGC 60.504 66.667 11.62 0.00 41.26 5.19
1345 2091 4.831307 CGTTCGTCGAGGCCGAGG 62.831 72.222 10.24 10.45 46.52 4.63
1424 2170 1.668151 GACAGCTTGTCCCGGACAC 60.668 63.158 20.33 9.80 42.60 3.67
1515 2263 3.801307 AGTTATCCGGGGTTGTCTTTT 57.199 42.857 0.00 0.00 0.00 2.27
1526 2274 3.694566 GGGTTGTCTTTTCTTATGCGGAT 59.305 43.478 0.00 0.00 0.00 4.18
1850 2601 2.385013 TCCAATCCATGTCACTGACG 57.615 50.000 4.71 0.00 34.95 4.35
1856 2607 0.670546 CCATGTCACTGACGGTCACC 60.671 60.000 6.76 0.00 34.95 4.02
2176 2936 1.298993 CTCTGCATGGCCTCACTGT 59.701 57.895 3.32 0.00 0.00 3.55
2306 3087 2.046285 CCAAGTTCACGGCCATCCC 61.046 63.158 2.24 0.00 0.00 3.85
2466 3247 4.704833 GGCTCGGTGCAGGCTTCA 62.705 66.667 4.30 0.00 45.15 3.02
2566 3352 6.647067 GTGGTGATTATCAGTAAGCAGATACC 59.353 42.308 0.00 0.00 36.93 2.73
2628 3415 2.121992 CTTGGCCTGAGACACCTGCT 62.122 60.000 3.32 0.00 0.00 4.24
2633 3420 1.674221 GCCTGAGACACCTGCTTGTAG 60.674 57.143 0.00 0.00 0.00 2.74
2634 3421 1.066573 CCTGAGACACCTGCTTGTAGG 60.067 57.143 3.21 3.21 43.71 3.18
2635 3422 1.895798 CTGAGACACCTGCTTGTAGGA 59.104 52.381 11.60 0.00 40.42 2.94
2636 3423 1.618837 TGAGACACCTGCTTGTAGGAC 59.381 52.381 11.60 3.29 40.42 3.85
2637 3424 1.896465 GAGACACCTGCTTGTAGGACT 59.104 52.381 11.60 7.45 40.42 3.85
2638 3425 3.090037 GAGACACCTGCTTGTAGGACTA 58.910 50.000 11.60 0.00 40.42 2.59
2639 3426 3.702045 GAGACACCTGCTTGTAGGACTAT 59.298 47.826 11.60 0.00 40.42 2.12
2640 3427 3.449018 AGACACCTGCTTGTAGGACTATG 59.551 47.826 11.60 2.23 40.42 2.23
2641 3428 3.173965 ACACCTGCTTGTAGGACTATGT 58.826 45.455 11.60 2.82 40.42 2.29
2642 3429 4.350245 ACACCTGCTTGTAGGACTATGTA 58.650 43.478 11.60 0.00 40.42 2.29
2643 3430 4.962995 ACACCTGCTTGTAGGACTATGTAT 59.037 41.667 11.60 0.00 40.42 2.29
2644 3431 5.163405 ACACCTGCTTGTAGGACTATGTATG 60.163 44.000 11.60 0.00 40.42 2.39
2645 3432 4.202264 ACCTGCTTGTAGGACTATGTATGC 60.202 45.833 11.60 0.00 40.42 3.14
2646 3433 4.039730 CCTGCTTGTAGGACTATGTATGCT 59.960 45.833 0.00 0.00 40.42 3.79
2647 3434 4.948847 TGCTTGTAGGACTATGTATGCTG 58.051 43.478 0.00 0.00 0.00 4.41
2648 3435 4.649218 TGCTTGTAGGACTATGTATGCTGA 59.351 41.667 0.00 0.00 0.00 4.26
2649 3436 5.221322 TGCTTGTAGGACTATGTATGCTGAG 60.221 44.000 0.00 0.00 0.00 3.35
2650 3437 5.221342 GCTTGTAGGACTATGTATGCTGAGT 60.221 44.000 0.00 0.00 0.00 3.41
2651 3438 5.774498 TGTAGGACTATGTATGCTGAGTG 57.226 43.478 0.00 0.00 0.00 3.51
2652 3439 5.201243 TGTAGGACTATGTATGCTGAGTGT 58.799 41.667 0.00 0.00 0.00 3.55
2653 3440 5.656859 TGTAGGACTATGTATGCTGAGTGTT 59.343 40.000 0.00 0.00 0.00 3.32
2654 3441 5.683876 AGGACTATGTATGCTGAGTGTTT 57.316 39.130 0.00 0.00 0.00 2.83
2655 3442 5.423015 AGGACTATGTATGCTGAGTGTTTG 58.577 41.667 0.00 0.00 0.00 2.93
2656 3443 5.187772 AGGACTATGTATGCTGAGTGTTTGA 59.812 40.000 0.00 0.00 0.00 2.69
2657 3444 5.292101 GGACTATGTATGCTGAGTGTTTGAC 59.708 44.000 0.00 0.00 0.00 3.18
2658 3445 5.793817 ACTATGTATGCTGAGTGTTTGACA 58.206 37.500 0.00 0.00 0.00 3.58
2659 3446 5.871524 ACTATGTATGCTGAGTGTTTGACAG 59.128 40.000 0.00 0.00 35.14 3.51
2660 3447 4.335400 TGTATGCTGAGTGTTTGACAGA 57.665 40.909 0.00 0.00 34.07 3.41
2661 3448 4.702831 TGTATGCTGAGTGTTTGACAGAA 58.297 39.130 0.00 0.00 34.07 3.02
2662 3449 5.122519 TGTATGCTGAGTGTTTGACAGAAA 58.877 37.500 0.00 0.00 34.07 2.52
2663 3450 5.588246 TGTATGCTGAGTGTTTGACAGAAAA 59.412 36.000 0.00 0.00 34.07 2.29
2664 3451 4.355543 TGCTGAGTGTTTGACAGAAAAC 57.644 40.909 0.00 0.00 39.90 2.43
2665 3452 4.009675 TGCTGAGTGTTTGACAGAAAACT 58.990 39.130 0.00 0.00 40.11 2.66
2666 3453 5.182487 TGCTGAGTGTTTGACAGAAAACTA 58.818 37.500 0.00 0.00 40.11 2.24
2667 3454 5.294306 TGCTGAGTGTTTGACAGAAAACTAG 59.706 40.000 0.00 0.00 40.11 2.57
2668 3455 5.734855 TGAGTGTTTGACAGAAAACTAGC 57.265 39.130 0.00 0.00 40.11 3.42
2669 3456 5.182487 TGAGTGTTTGACAGAAAACTAGCA 58.818 37.500 0.00 0.00 40.11 3.49
2670 3457 5.064707 TGAGTGTTTGACAGAAAACTAGCAC 59.935 40.000 0.00 0.00 40.11 4.40
2671 3458 4.941263 AGTGTTTGACAGAAAACTAGCACA 59.059 37.500 0.00 0.00 40.11 4.57
2672 3459 5.414454 AGTGTTTGACAGAAAACTAGCACAA 59.586 36.000 0.00 0.00 40.11 3.33
2673 3460 6.095440 AGTGTTTGACAGAAAACTAGCACAAT 59.905 34.615 0.00 0.00 40.11 2.71
2674 3461 6.751888 GTGTTTGACAGAAAACTAGCACAATT 59.248 34.615 0.00 0.00 40.11 2.32
2675 3462 6.751425 TGTTTGACAGAAAACTAGCACAATTG 59.249 34.615 3.24 3.24 40.11 2.32
2676 3463 6.691754 TTGACAGAAAACTAGCACAATTGA 57.308 33.333 13.59 0.00 0.00 2.57
2677 3464 6.304356 TGACAGAAAACTAGCACAATTGAG 57.696 37.500 13.59 5.31 0.00 3.02
2678 3465 5.239306 TGACAGAAAACTAGCACAATTGAGG 59.761 40.000 13.59 4.97 0.00 3.86
2679 3466 5.133221 ACAGAAAACTAGCACAATTGAGGT 58.867 37.500 13.59 12.79 0.00 3.85
2680 3467 5.594317 ACAGAAAACTAGCACAATTGAGGTT 59.406 36.000 13.59 0.42 0.00 3.50
2681 3468 6.145535 CAGAAAACTAGCACAATTGAGGTTC 58.854 40.000 13.59 4.14 0.00 3.62
2682 3469 4.749245 AAACTAGCACAATTGAGGTTCG 57.251 40.909 13.59 7.38 0.00 3.95
2683 3470 2.076863 ACTAGCACAATTGAGGTTCGC 58.923 47.619 13.59 4.73 0.00 4.70
2684 3471 1.061131 CTAGCACAATTGAGGTTCGCG 59.939 52.381 13.59 0.00 0.00 5.87
2685 3472 1.797537 GCACAATTGAGGTTCGCGC 60.798 57.895 13.59 0.00 0.00 6.86
2686 3473 1.868997 CACAATTGAGGTTCGCGCT 59.131 52.632 13.59 0.00 0.00 5.92
2687 3474 0.179215 CACAATTGAGGTTCGCGCTC 60.179 55.000 13.59 2.75 0.00 5.03
2688 3475 0.320771 ACAATTGAGGTTCGCGCTCT 60.321 50.000 13.59 0.00 0.00 4.09
2689 3476 0.371645 CAATTGAGGTTCGCGCTCTC 59.628 55.000 5.56 8.71 0.00 3.20
2690 3477 0.037326 AATTGAGGTTCGCGCTCTCA 60.037 50.000 17.38 17.38 35.95 3.27
2691 3478 0.176680 ATTGAGGTTCGCGCTCTCAT 59.823 50.000 20.34 11.60 37.38 2.90
2692 3479 0.815095 TTGAGGTTCGCGCTCTCATA 59.185 50.000 20.34 12.10 37.38 2.15
2693 3480 0.382158 TGAGGTTCGCGCTCTCATAG 59.618 55.000 17.38 0.00 33.21 2.23
2694 3481 0.663688 GAGGTTCGCGCTCTCATAGA 59.336 55.000 5.56 0.00 0.00 1.98
2695 3482 1.065701 GAGGTTCGCGCTCTCATAGAA 59.934 52.381 5.56 0.00 0.00 2.10
2696 3483 1.201343 GGTTCGCGCTCTCATAGAAC 58.799 55.000 5.56 9.65 40.09 3.01
2697 3484 1.202313 GGTTCGCGCTCTCATAGAACT 60.202 52.381 17.50 0.00 40.49 3.01
2698 3485 2.033049 GGTTCGCGCTCTCATAGAACTA 59.967 50.000 17.50 0.00 40.49 2.24
2699 3486 3.037324 GTTCGCGCTCTCATAGAACTAC 58.963 50.000 5.56 0.00 38.40 2.73
2700 3487 2.562635 TCGCGCTCTCATAGAACTACT 58.437 47.619 5.56 0.00 0.00 2.57
2701 3488 2.943690 TCGCGCTCTCATAGAACTACTT 59.056 45.455 5.56 0.00 0.00 2.24
2702 3489 3.002451 TCGCGCTCTCATAGAACTACTTC 59.998 47.826 5.56 0.00 0.00 3.01
2703 3490 3.634283 GCGCTCTCATAGAACTACTTCC 58.366 50.000 0.00 0.00 0.00 3.46
2704 3491 3.316868 GCGCTCTCATAGAACTACTTCCT 59.683 47.826 0.00 0.00 0.00 3.36
2705 3492 4.515944 GCGCTCTCATAGAACTACTTCCTA 59.484 45.833 0.00 0.00 0.00 2.94
2706 3493 5.561339 GCGCTCTCATAGAACTACTTCCTAC 60.561 48.000 0.00 0.00 0.00 3.18
2707 3494 5.333492 CGCTCTCATAGAACTACTTCCTACG 60.333 48.000 0.00 0.00 0.00 3.51
2708 3495 5.561339 GCTCTCATAGAACTACTTCCTACGC 60.561 48.000 0.00 0.00 0.00 4.42
2709 3496 4.820716 TCTCATAGAACTACTTCCTACGCC 59.179 45.833 0.00 0.00 0.00 5.68
2710 3497 3.887716 TCATAGAACTACTTCCTACGCCC 59.112 47.826 0.00 0.00 0.00 6.13
2711 3498 1.482954 AGAACTACTTCCTACGCCCC 58.517 55.000 0.00 0.00 0.00 5.80
2712 3499 1.188863 GAACTACTTCCTACGCCCCA 58.811 55.000 0.00 0.00 0.00 4.96
2713 3500 1.761198 GAACTACTTCCTACGCCCCAT 59.239 52.381 0.00 0.00 0.00 4.00
2714 3501 1.120530 ACTACTTCCTACGCCCCATG 58.879 55.000 0.00 0.00 0.00 3.66
2715 3502 1.342674 ACTACTTCCTACGCCCCATGA 60.343 52.381 0.00 0.00 0.00 3.07
2716 3503 1.971357 CTACTTCCTACGCCCCATGAT 59.029 52.381 0.00 0.00 0.00 2.45
2717 3504 2.097110 ACTTCCTACGCCCCATGATA 57.903 50.000 0.00 0.00 0.00 2.15
2718 3505 2.621070 ACTTCCTACGCCCCATGATAT 58.379 47.619 0.00 0.00 0.00 1.63
2719 3506 3.786553 ACTTCCTACGCCCCATGATATA 58.213 45.455 0.00 0.00 0.00 0.86
2720 3507 4.164981 ACTTCCTACGCCCCATGATATAA 58.835 43.478 0.00 0.00 0.00 0.98
2721 3508 4.223032 ACTTCCTACGCCCCATGATATAAG 59.777 45.833 0.00 0.00 0.00 1.73
2722 3509 4.055710 TCCTACGCCCCATGATATAAGA 57.944 45.455 0.00 0.00 0.00 2.10
2723 3510 4.422057 TCCTACGCCCCATGATATAAGAA 58.578 43.478 0.00 0.00 0.00 2.52
2724 3511 4.222145 TCCTACGCCCCATGATATAAGAAC 59.778 45.833 0.00 0.00 0.00 3.01
2725 3512 3.040147 ACGCCCCATGATATAAGAACG 57.960 47.619 0.00 0.00 0.00 3.95
2726 3513 2.367567 ACGCCCCATGATATAAGAACGT 59.632 45.455 0.00 0.00 0.00 3.99
2727 3514 3.181458 ACGCCCCATGATATAAGAACGTT 60.181 43.478 0.00 0.00 0.00 3.99
2728 3515 3.813166 CGCCCCATGATATAAGAACGTTT 59.187 43.478 0.46 0.00 0.00 3.60
2729 3516 4.274950 CGCCCCATGATATAAGAACGTTTT 59.725 41.667 0.46 0.00 0.00 2.43
2730 3517 5.220970 CGCCCCATGATATAAGAACGTTTTT 60.221 40.000 9.22 9.22 0.00 1.94
2731 3518 5.977129 GCCCCATGATATAAGAACGTTTTTG 59.023 40.000 13.87 0.00 0.00 2.44
2732 3519 6.183360 GCCCCATGATATAAGAACGTTTTTGA 60.183 38.462 13.87 2.81 0.00 2.69
2733 3520 7.193595 CCCCATGATATAAGAACGTTTTTGAC 58.806 38.462 13.87 0.00 0.00 3.18
2734 3521 7.148154 CCCCATGATATAAGAACGTTTTTGACA 60.148 37.037 13.87 8.67 0.00 3.58
2735 3522 7.696453 CCCATGATATAAGAACGTTTTTGACAC 59.304 37.037 13.87 4.54 0.00 3.67
2736 3523 8.450964 CCATGATATAAGAACGTTTTTGACACT 58.549 33.333 13.87 0.00 0.00 3.55
2739 3526 9.478768 TGATATAAGAACGTTTTTGACACTACA 57.521 29.630 13.87 3.34 0.00 2.74
2740 3527 9.737025 GATATAAGAACGTTTTTGACACTACAC 57.263 33.333 13.87 0.00 0.00 2.90
2741 3528 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
2742 3529 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
2743 3530 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2744 3531 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2745 3532 7.483307 AGAACGTTTTTGACACTACACTAGTA 58.517 34.615 0.46 0.00 37.23 1.82
2746 3533 8.139989 AGAACGTTTTTGACACTACACTAGTAT 58.860 33.333 0.46 0.00 37.23 2.12
2747 3534 9.398170 GAACGTTTTTGACACTACACTAGTATA 57.602 33.333 0.46 0.00 37.23 1.47
2748 3535 9.748708 AACGTTTTTGACACTACACTAGTATAA 57.251 29.630 0.00 0.00 37.23 0.98
2749 3536 9.748708 ACGTTTTTGACACTACACTAGTATAAA 57.251 29.630 0.00 0.00 37.23 1.40
2776 3563 8.498054 AACATTCTTATATTATGCGATGGAGG 57.502 34.615 0.00 0.00 0.00 4.30
2777 3564 7.050377 ACATTCTTATATTATGCGATGGAGGG 58.950 38.462 0.00 0.00 0.00 4.30
2778 3565 6.867519 TTCTTATATTATGCGATGGAGGGA 57.132 37.500 0.00 0.00 0.00 4.20
2779 3566 6.471233 TCTTATATTATGCGATGGAGGGAG 57.529 41.667 0.00 0.00 0.00 4.30
2780 3567 5.958380 TCTTATATTATGCGATGGAGGGAGT 59.042 40.000 0.00 0.00 0.00 3.85
2781 3568 7.123383 TCTTATATTATGCGATGGAGGGAGTA 58.877 38.462 0.00 0.00 0.00 2.59
2782 3569 3.963428 ATTATGCGATGGAGGGAGTAC 57.037 47.619 0.00 0.00 0.00 2.73
2783 3570 1.629043 TATGCGATGGAGGGAGTACC 58.371 55.000 0.00 0.00 40.67 3.34
2784 3571 0.398522 ATGCGATGGAGGGAGTACCA 60.399 55.000 0.00 0.00 43.89 3.25
2786 3573 0.759346 GCGATGGAGGGAGTACCATT 59.241 55.000 0.00 0.00 45.41 3.16
2787 3574 1.141053 GCGATGGAGGGAGTACCATTT 59.859 52.381 0.00 0.00 45.41 2.32
2788 3575 2.421529 GCGATGGAGGGAGTACCATTTT 60.422 50.000 0.00 0.00 45.41 1.82
2789 3576 3.886123 CGATGGAGGGAGTACCATTTTT 58.114 45.455 0.00 0.00 45.41 1.94
2790 3577 4.685030 GCGATGGAGGGAGTACCATTTTTA 60.685 45.833 0.00 0.00 45.41 1.52
2791 3578 5.433526 CGATGGAGGGAGTACCATTTTTAA 58.566 41.667 0.00 0.00 45.41 1.52
2792 3579 5.883673 CGATGGAGGGAGTACCATTTTTAAA 59.116 40.000 0.00 0.00 45.41 1.52
2793 3580 6.376018 CGATGGAGGGAGTACCATTTTTAAAA 59.624 38.462 0.00 0.00 45.41 1.52
2794 3581 7.094118 CGATGGAGGGAGTACCATTTTTAAAAA 60.094 37.037 15.38 15.38 45.41 1.94
2842 3629 8.976986 TTAGAATCTCGTGACTAAAAACTACC 57.023 34.615 0.00 0.00 0.00 3.18
2843 3630 6.989659 AGAATCTCGTGACTAAAAACTACCA 58.010 36.000 0.00 0.00 0.00 3.25
2844 3631 6.867293 AGAATCTCGTGACTAAAAACTACCAC 59.133 38.462 0.00 0.00 0.00 4.16
2845 3632 5.779529 TCTCGTGACTAAAAACTACCACT 57.220 39.130 0.00 0.00 0.00 4.00
2846 3633 6.152932 TCTCGTGACTAAAAACTACCACTT 57.847 37.500 0.00 0.00 0.00 3.16
2847 3634 6.576185 TCTCGTGACTAAAAACTACCACTTT 58.424 36.000 0.00 0.00 0.00 2.66
2848 3635 6.698766 TCTCGTGACTAAAAACTACCACTTTC 59.301 38.462 0.00 0.00 0.00 2.62
2849 3636 5.459762 TCGTGACTAAAAACTACCACTTTCG 59.540 40.000 0.00 0.00 0.00 3.46
2850 3637 5.459762 CGTGACTAAAAACTACCACTTTCGA 59.540 40.000 0.00 0.00 0.00 3.71
2851 3638 6.019640 CGTGACTAAAAACTACCACTTTCGAA 60.020 38.462 0.00 0.00 0.00 3.71
2852 3639 7.464444 CGTGACTAAAAACTACCACTTTCGAAA 60.464 37.037 10.71 10.71 0.00 3.46
2853 3640 8.177013 GTGACTAAAAACTACCACTTTCGAAAA 58.823 33.333 12.41 0.00 0.00 2.29
2854 3641 8.728833 TGACTAAAAACTACCACTTTCGAAAAA 58.271 29.630 12.41 0.00 0.00 1.94
2855 3642 9.726232 GACTAAAAACTACCACTTTCGAAAAAT 57.274 29.630 12.41 0.02 0.00 1.82
2856 3643 9.511144 ACTAAAAACTACCACTTTCGAAAAATG 57.489 29.630 12.41 12.59 0.00 2.32
2857 3644 7.764695 AAAAACTACCACTTTCGAAAAATGG 57.235 32.000 27.55 27.55 33.17 3.16
2858 3645 4.499037 ACTACCACTTTCGAAAAATGGC 57.501 40.909 28.47 0.00 31.55 4.40
2859 3646 2.812358 ACCACTTTCGAAAAATGGCC 57.188 45.000 28.47 0.00 31.55 5.36
2860 3647 2.035632 ACCACTTTCGAAAAATGGCCA 58.964 42.857 28.47 8.56 31.55 5.36
2861 3648 2.035832 ACCACTTTCGAAAAATGGCCAG 59.964 45.455 28.47 12.53 31.55 4.85
2862 3649 2.035832 CCACTTTCGAAAAATGGCCAGT 59.964 45.455 21.64 5.37 0.00 4.00
2863 3650 3.492482 CCACTTTCGAAAAATGGCCAGTT 60.492 43.478 21.64 13.79 0.00 3.16
2864 3651 4.119136 CACTTTCGAAAAATGGCCAGTTT 58.881 39.130 24.81 24.81 0.00 2.66
2865 3652 5.285651 CACTTTCGAAAAATGGCCAGTTTA 58.714 37.500 29.69 13.27 0.00 2.01
2866 3653 5.402270 CACTTTCGAAAAATGGCCAGTTTAG 59.598 40.000 29.69 23.65 0.00 1.85
2867 3654 5.300792 ACTTTCGAAAAATGGCCAGTTTAGA 59.699 36.000 29.69 26.30 0.00 2.10
2868 3655 5.776173 TTCGAAAAATGGCCAGTTTAGAA 57.224 34.783 29.39 29.39 0.00 2.10
2869 3656 5.371115 TCGAAAAATGGCCAGTTTAGAAG 57.629 39.130 29.69 19.98 0.00 2.85
2870 3657 5.067273 TCGAAAAATGGCCAGTTTAGAAGA 58.933 37.500 29.69 21.64 0.00 2.87
2871 3658 5.710099 TCGAAAAATGGCCAGTTTAGAAGAT 59.290 36.000 29.69 14.37 0.00 2.40
2872 3659 6.208599 TCGAAAAATGGCCAGTTTAGAAGATT 59.791 34.615 29.69 13.63 0.00 2.40
2873 3660 6.868339 CGAAAAATGGCCAGTTTAGAAGATTT 59.132 34.615 29.69 12.88 0.00 2.17
2874 3661 8.026607 CGAAAAATGGCCAGTTTAGAAGATTTA 58.973 33.333 29.69 0.00 0.00 1.40
2875 3662 9.705290 GAAAAATGGCCAGTTTAGAAGATTTAA 57.295 29.630 29.69 0.00 0.00 1.52
2878 3665 9.657419 AAATGGCCAGTTTAGAAGATTTAAATG 57.343 29.630 13.79 0.00 0.00 2.32
2879 3666 7.775053 TGGCCAGTTTAGAAGATTTAAATGT 57.225 32.000 0.00 0.00 0.00 2.71
2880 3667 7.601856 TGGCCAGTTTAGAAGATTTAAATGTG 58.398 34.615 0.00 0.00 0.00 3.21
2881 3668 7.232534 TGGCCAGTTTAGAAGATTTAAATGTGT 59.767 33.333 0.00 0.00 0.00 3.72
2882 3669 8.088365 GGCCAGTTTAGAAGATTTAAATGTGTT 58.912 33.333 5.17 0.00 0.00 3.32
2883 3670 9.476202 GCCAGTTTAGAAGATTTAAATGTGTTT 57.524 29.630 5.17 0.00 0.00 2.83
2893 3680 8.619146 AGATTTAAATGTGTTTATGACATGCG 57.381 30.769 5.17 0.00 41.10 4.73
2894 3681 7.701924 AGATTTAAATGTGTTTATGACATGCGG 59.298 33.333 5.17 0.00 41.10 5.69
2895 3682 3.781079 AATGTGTTTATGACATGCGGG 57.219 42.857 0.00 0.00 41.10 6.13
2896 3683 1.458398 TGTGTTTATGACATGCGGGG 58.542 50.000 0.00 0.00 41.10 5.73
2897 3684 0.100503 GTGTTTATGACATGCGGGGC 59.899 55.000 0.00 0.00 41.10 5.80
2898 3685 1.034838 TGTTTATGACATGCGGGGCC 61.035 55.000 0.00 0.00 32.00 5.80
2899 3686 1.821759 TTTATGACATGCGGGGCCG 60.822 57.895 0.00 0.00 43.09 6.13
2900 3687 2.544590 TTTATGACATGCGGGGCCGT 62.545 55.000 0.00 0.00 42.09 5.68
2901 3688 2.933878 TTATGACATGCGGGGCCGTC 62.934 60.000 0.00 0.00 42.09 4.79
2921 3708 3.680786 TCAGGGCTGACGTGACGG 61.681 66.667 10.66 0.00 38.93 4.79
2922 3709 4.742201 CAGGGCTGACGTGACGGG 62.742 72.222 10.66 0.00 37.13 5.28
2923 3710 4.988716 AGGGCTGACGTGACGGGA 62.989 66.667 10.66 0.00 0.00 5.14
2924 3711 3.998672 GGGCTGACGTGACGGGAA 61.999 66.667 10.66 0.00 0.00 3.97
2925 3712 2.029964 GGCTGACGTGACGGGAAA 59.970 61.111 10.66 0.00 0.00 3.13
2926 3713 2.027625 GGCTGACGTGACGGGAAAG 61.028 63.158 10.66 2.01 0.00 2.62
2927 3714 1.300697 GCTGACGTGACGGGAAAGT 60.301 57.895 10.66 0.00 0.00 2.66
2928 3715 1.282930 GCTGACGTGACGGGAAAGTC 61.283 60.000 10.66 0.00 41.30 3.01
2935 3722 1.860676 TGACGGGAAAGTCAACTTCG 58.139 50.000 0.00 0.00 46.81 3.79
2936 3723 1.137479 TGACGGGAAAGTCAACTTCGT 59.863 47.619 7.56 7.56 46.81 3.85
2937 3724 2.207590 GACGGGAAAGTCAACTTCGTT 58.792 47.619 8.80 0.00 40.65 3.85
2938 3725 2.610833 GACGGGAAAGTCAACTTCGTTT 59.389 45.455 8.80 0.00 40.65 3.60
2939 3726 3.795877 ACGGGAAAGTCAACTTCGTTTA 58.204 40.909 0.00 0.00 32.44 2.01
2940 3727 4.383173 ACGGGAAAGTCAACTTCGTTTAT 58.617 39.130 0.00 0.00 32.44 1.40
2941 3728 4.818005 ACGGGAAAGTCAACTTCGTTTATT 59.182 37.500 0.00 0.00 32.44 1.40
2942 3729 5.297527 ACGGGAAAGTCAACTTCGTTTATTT 59.702 36.000 0.00 0.00 32.44 1.40
2943 3730 6.183360 ACGGGAAAGTCAACTTCGTTTATTTT 60.183 34.615 0.00 0.00 32.44 1.82
2944 3731 6.693978 CGGGAAAGTCAACTTCGTTTATTTTT 59.306 34.615 0.00 0.00 34.61 1.94
2963 3750 5.809719 TTTTTACCGTTAAGTTGACCGTT 57.190 34.783 0.00 0.00 0.00 4.44
2964 3751 6.910536 TTTTTACCGTTAAGTTGACCGTTA 57.089 33.333 0.00 0.00 0.00 3.18
2965 3752 7.489574 TTTTTACCGTTAAGTTGACCGTTAT 57.510 32.000 0.00 0.00 0.00 1.89
2966 3753 6.464895 TTTACCGTTAAGTTGACCGTTATG 57.535 37.500 0.00 0.00 0.00 1.90
2967 3754 4.255833 ACCGTTAAGTTGACCGTTATGA 57.744 40.909 0.00 0.00 0.00 2.15
2968 3755 3.989817 ACCGTTAAGTTGACCGTTATGAC 59.010 43.478 0.00 0.00 0.00 3.06
2969 3756 3.989167 CCGTTAAGTTGACCGTTATGACA 59.011 43.478 0.00 0.00 0.00 3.58
2970 3757 4.090930 CCGTTAAGTTGACCGTTATGACAG 59.909 45.833 0.00 0.00 0.00 3.51
2971 3758 4.090930 CGTTAAGTTGACCGTTATGACAGG 59.909 45.833 0.00 0.00 0.00 4.00
2972 3759 3.764237 AAGTTGACCGTTATGACAGGT 57.236 42.857 4.31 4.31 41.63 4.00
2973 3760 3.040147 AGTTGACCGTTATGACAGGTG 57.960 47.619 8.46 0.00 38.57 4.00
2974 3761 2.073816 GTTGACCGTTATGACAGGTGG 58.926 52.381 8.46 0.00 38.57 4.61
2975 3762 0.611200 TGACCGTTATGACAGGTGGG 59.389 55.000 8.46 0.00 38.57 4.61
2990 3777 3.315949 GGGCCCCACACGTCAGTA 61.316 66.667 12.23 0.00 0.00 2.74
3002 3789 6.202937 CCACACGTCAGTATCTATCTTCTTC 58.797 44.000 0.00 0.00 0.00 2.87
3003 3790 6.038825 CCACACGTCAGTATCTATCTTCTTCT 59.961 42.308 0.00 0.00 0.00 2.85
3009 3796 7.227711 CGTCAGTATCTATCTTCTTCTTCCTCA 59.772 40.741 0.00 0.00 0.00 3.86
3010 3797 9.077885 GTCAGTATCTATCTTCTTCTTCCTCAT 57.922 37.037 0.00 0.00 0.00 2.90
3011 3798 9.295825 TCAGTATCTATCTTCTTCTTCCTCATC 57.704 37.037 0.00 0.00 0.00 2.92
3012 3799 8.236586 CAGTATCTATCTTCTTCTTCCTCATCG 58.763 40.741 0.00 0.00 0.00 3.84
3048 3835 3.003897 GGCATTTCAACAAACACCTCGTA 59.996 43.478 0.00 0.00 0.00 3.43
3060 3859 2.701780 CCTCGTAGGTGAGCGCTGT 61.702 63.158 18.48 0.00 34.56 4.40
3093 3892 2.037367 ACACCTAGAGGCTGCCGA 59.963 61.111 13.96 1.72 39.32 5.54
3100 3899 1.654954 TAGAGGCTGCCGAAGTCGAC 61.655 60.000 13.96 7.70 43.02 4.20
3115 3914 2.583593 GACGATGACGGAGGCAGC 60.584 66.667 0.00 0.00 44.46 5.25
3219 4018 3.127533 GTCTGGCCGTGGTGATGC 61.128 66.667 0.00 0.00 0.00 3.91
3329 4236 1.153549 GCTTCTCGTGGCAGTAGGG 60.154 63.158 0.00 0.00 0.00 3.53
3350 4257 1.622607 CGCTGGGGAACATCAGGGTA 61.623 60.000 0.00 0.00 38.49 3.69
3362 4269 4.748798 AGGGTAGGGGCAGCAGCT 62.749 66.667 0.00 0.00 41.70 4.24
3435 4342 3.880846 GCTATGCGTGGCCACAGC 61.881 66.667 34.16 33.06 38.76 4.40
3436 4343 2.124983 CTATGCGTGGCCACAGCT 60.125 61.111 35.44 27.08 39.73 4.24
3437 4344 2.436469 TATGCGTGGCCACAGCTG 60.436 61.111 35.44 23.24 39.73 4.24
3451 4358 3.978272 GCTGCTGCTACTGCTTGT 58.022 55.556 8.53 0.00 40.48 3.16
3452 4359 1.792941 GCTGCTGCTACTGCTTGTC 59.207 57.895 8.53 0.00 40.48 3.18
3453 4360 1.642952 GCTGCTGCTACTGCTTGTCC 61.643 60.000 8.53 0.00 40.48 4.02
3454 4361 1.003355 TGCTGCTACTGCTTGTCCC 60.003 57.895 0.00 0.00 40.48 4.46
3455 4362 1.746991 GCTGCTACTGCTTGTCCCC 60.747 63.158 0.00 0.00 40.48 4.81
3456 4363 1.679311 CTGCTACTGCTTGTCCCCA 59.321 57.895 0.00 0.00 40.48 4.96
3457 4364 0.254178 CTGCTACTGCTTGTCCCCAT 59.746 55.000 0.00 0.00 40.48 4.00
3458 4365 0.035152 TGCTACTGCTTGTCCCCATG 60.035 55.000 0.00 0.00 40.48 3.66
3459 4366 0.035056 GCTACTGCTTGTCCCCATGT 60.035 55.000 0.00 0.00 36.03 3.21
3460 4367 1.742761 CTACTGCTTGTCCCCATGTG 58.257 55.000 0.00 0.00 0.00 3.21
3461 4368 1.003580 CTACTGCTTGTCCCCATGTGT 59.996 52.381 0.00 0.00 0.00 3.72
3462 4369 0.538057 ACTGCTTGTCCCCATGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
3463 4370 1.870055 CTGCTTGTCCCCATGTGTGC 61.870 60.000 0.00 0.00 0.00 4.57
3464 4371 2.639327 GCTTGTCCCCATGTGTGCC 61.639 63.158 0.00 0.00 0.00 5.01
3465 4372 1.978617 CTTGTCCCCATGTGTGCCC 60.979 63.158 0.00 0.00 0.00 5.36
3466 4373 3.521765 TTGTCCCCATGTGTGCCCC 62.522 63.158 0.00 0.00 0.00 5.80
3467 4374 3.661648 GTCCCCATGTGTGCCCCT 61.662 66.667 0.00 0.00 0.00 4.79
3468 4375 3.660571 TCCCCATGTGTGCCCCTG 61.661 66.667 0.00 0.00 0.00 4.45
3469 4376 3.983420 CCCCATGTGTGCCCCTGT 61.983 66.667 0.00 0.00 0.00 4.00
3470 4377 2.118076 CCCATGTGTGCCCCTGTT 59.882 61.111 0.00 0.00 0.00 3.16
3471 4378 2.277591 CCCATGTGTGCCCCTGTTG 61.278 63.158 0.00 0.00 0.00 3.33
3472 4379 1.531365 CCATGTGTGCCCCTGTTGT 60.531 57.895 0.00 0.00 0.00 3.32
3473 4380 1.114722 CCATGTGTGCCCCTGTTGTT 61.115 55.000 0.00 0.00 0.00 2.83
3474 4381 0.032403 CATGTGTGCCCCTGTTGTTG 59.968 55.000 0.00 0.00 0.00 3.33
3475 4382 1.747325 ATGTGTGCCCCTGTTGTTGC 61.747 55.000 0.00 0.00 0.00 4.17
3476 4383 2.127232 GTGTGCCCCTGTTGTTGCT 61.127 57.895 0.00 0.00 0.00 3.91
3477 4384 0.821711 GTGTGCCCCTGTTGTTGCTA 60.822 55.000 0.00 0.00 0.00 3.49
3478 4385 0.106469 TGTGCCCCTGTTGTTGCTAA 60.106 50.000 0.00 0.00 0.00 3.09
3479 4386 1.256812 GTGCCCCTGTTGTTGCTAAT 58.743 50.000 0.00 0.00 0.00 1.73
3480 4387 1.618343 GTGCCCCTGTTGTTGCTAATT 59.382 47.619 0.00 0.00 0.00 1.40
3481 4388 1.617850 TGCCCCTGTTGTTGCTAATTG 59.382 47.619 0.00 0.00 0.00 2.32
3482 4389 1.618343 GCCCCTGTTGTTGCTAATTGT 59.382 47.619 0.00 0.00 0.00 2.71
3483 4390 2.037121 GCCCCTGTTGTTGCTAATTGTT 59.963 45.455 0.00 0.00 0.00 2.83
3484 4391 3.652274 CCCCTGTTGTTGCTAATTGTTG 58.348 45.455 0.00 0.00 0.00 3.33
3485 4392 3.069443 CCCCTGTTGTTGCTAATTGTTGT 59.931 43.478 0.00 0.00 0.00 3.32
3486 4393 4.050553 CCCTGTTGTTGCTAATTGTTGTG 58.949 43.478 0.00 0.00 0.00 3.33
3487 4394 4.202101 CCCTGTTGTTGCTAATTGTTGTGA 60.202 41.667 0.00 0.00 0.00 3.58
3488 4395 4.739716 CCTGTTGTTGCTAATTGTTGTGAC 59.260 41.667 0.00 0.00 0.00 3.67
3489 4396 4.677584 TGTTGTTGCTAATTGTTGTGACC 58.322 39.130 0.00 0.00 0.00 4.02
3490 4397 4.400884 TGTTGTTGCTAATTGTTGTGACCT 59.599 37.500 0.00 0.00 0.00 3.85
3491 4398 5.105554 TGTTGTTGCTAATTGTTGTGACCTT 60.106 36.000 0.00 0.00 0.00 3.50
3492 4399 5.181690 TGTTGCTAATTGTTGTGACCTTC 57.818 39.130 0.00 0.00 0.00 3.46
3493 4400 4.219033 GTTGCTAATTGTTGTGACCTTCG 58.781 43.478 0.00 0.00 0.00 3.79
3494 4401 2.225491 TGCTAATTGTTGTGACCTTCGC 59.775 45.455 0.00 0.00 0.00 4.70
3495 4402 2.484264 GCTAATTGTTGTGACCTTCGCT 59.516 45.455 0.00 0.00 0.00 4.93
3496 4403 3.667960 GCTAATTGTTGTGACCTTCGCTG 60.668 47.826 0.00 0.00 0.00 5.18
3497 4404 0.593128 ATTGTTGTGACCTTCGCTGC 59.407 50.000 0.00 0.00 0.00 5.25
3498 4405 0.463654 TTGTTGTGACCTTCGCTGCT 60.464 50.000 0.00 0.00 0.00 4.24
3499 4406 1.159713 TGTTGTGACCTTCGCTGCTG 61.160 55.000 0.00 0.00 0.00 4.41
3500 4407 2.253758 TTGTGACCTTCGCTGCTGC 61.254 57.895 5.34 5.34 0.00 5.25
3501 4408 2.358003 GTGACCTTCGCTGCTGCT 60.358 61.111 14.03 0.00 36.97 4.24
3502 4409 2.047844 TGACCTTCGCTGCTGCTC 60.048 61.111 14.03 4.54 36.97 4.26
3503 4410 3.184683 GACCTTCGCTGCTGCTCG 61.185 66.667 14.03 4.86 36.97 5.03
3507 4414 4.687215 TTCGCTGCTGCTCGCCTT 62.687 61.111 14.03 0.00 38.05 4.35
3508 4415 4.687215 TCGCTGCTGCTCGCCTTT 62.687 61.111 14.03 0.00 38.05 3.11
3509 4416 4.456253 CGCTGCTGCTCGCCTTTG 62.456 66.667 14.03 0.00 38.05 2.77
3510 4417 4.773117 GCTGCTGCTCGCCTTTGC 62.773 66.667 8.53 0.00 38.05 3.68
3511 4418 3.054503 CTGCTGCTCGCCTTTGCT 61.055 61.111 0.00 0.00 38.05 3.91
3512 4419 3.324099 CTGCTGCTCGCCTTTGCTG 62.324 63.158 0.00 0.00 38.05 4.41
3513 4420 4.112341 GCTGCTCGCCTTTGCTGG 62.112 66.667 0.00 0.00 34.43 4.85
3520 4427 3.294493 GCCTTTGCTGGCCGTGAA 61.294 61.111 0.00 0.00 46.82 3.18
3521 4428 2.956987 CCTTTGCTGGCCGTGAAG 59.043 61.111 0.00 0.00 0.00 3.02
3522 4429 1.898574 CCTTTGCTGGCCGTGAAGT 60.899 57.895 0.00 0.00 0.00 3.01
3523 4430 1.455383 CCTTTGCTGGCCGTGAAGTT 61.455 55.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.249911 TGCCACTAGTAGAGTCACTATACT 57.750 41.667 16.24 16.24 40.82 2.12
713 741 9.783081 ATATCTTTTTCTGTTCATTTTGCCTTT 57.217 25.926 0.00 0.00 0.00 3.11
816 1561 8.331022 CGATTTCAACGTTTCTTCATCTGATAT 58.669 33.333 0.00 0.00 0.00 1.63
817 1562 7.201522 CCGATTTCAACGTTTCTTCATCTGATA 60.202 37.037 0.00 0.00 0.00 2.15
1526 2274 4.323477 ACCTGCTTACCCGCGCAA 62.323 61.111 8.75 0.00 35.46 4.85
1531 2279 2.125673 CCGTCACCTGCTTACCCG 60.126 66.667 0.00 0.00 0.00 5.28
1850 2601 2.113131 CTGCGTTTGGTTCGGTGACC 62.113 60.000 0.00 0.00 40.23 4.02
1856 2607 2.712077 GCAATCTGCGTTTGGTTCG 58.288 52.632 0.00 0.00 31.71 3.95
2317 3098 1.407989 CGACCCTACTAGGACGACCTT 60.408 57.143 12.68 0.00 45.36 3.50
2328 3109 2.602568 AACCACGGCGACCCTACT 60.603 61.111 16.62 0.00 0.00 2.57
2360 3141 3.352338 CTCCCGAACCCGAAGTCCG 62.352 68.421 0.00 0.00 38.22 4.79
2566 3352 7.858879 TCGATTATTTGCAGATCATTCAACATG 59.141 33.333 0.00 0.00 0.00 3.21
2628 3415 5.656859 ACACTCAGCATACATAGTCCTACAA 59.343 40.000 0.00 0.00 0.00 2.41
2633 3420 5.292101 GTCAAACACTCAGCATACATAGTCC 59.708 44.000 0.00 0.00 0.00 3.85
2634 3421 5.869344 TGTCAAACACTCAGCATACATAGTC 59.131 40.000 0.00 0.00 0.00 2.59
2635 3422 5.793817 TGTCAAACACTCAGCATACATAGT 58.206 37.500 0.00 0.00 0.00 2.12
2636 3423 6.101997 TCTGTCAAACACTCAGCATACATAG 58.898 40.000 0.00 0.00 0.00 2.23
2637 3424 6.036577 TCTGTCAAACACTCAGCATACATA 57.963 37.500 0.00 0.00 0.00 2.29
2638 3425 4.898320 TCTGTCAAACACTCAGCATACAT 58.102 39.130 0.00 0.00 0.00 2.29
2639 3426 4.335400 TCTGTCAAACACTCAGCATACA 57.665 40.909 0.00 0.00 0.00 2.29
2640 3427 5.673337 TTTCTGTCAAACACTCAGCATAC 57.327 39.130 0.00 0.00 0.00 2.39
2641 3428 5.822519 AGTTTTCTGTCAAACACTCAGCATA 59.177 36.000 7.59 0.00 38.86 3.14
2642 3429 4.641989 AGTTTTCTGTCAAACACTCAGCAT 59.358 37.500 7.59 0.00 38.86 3.79
2643 3430 4.009675 AGTTTTCTGTCAAACACTCAGCA 58.990 39.130 7.59 0.00 38.86 4.41
2644 3431 4.622701 AGTTTTCTGTCAAACACTCAGC 57.377 40.909 7.59 0.00 38.86 4.26
2645 3432 5.294306 TGCTAGTTTTCTGTCAAACACTCAG 59.706 40.000 0.00 0.00 38.86 3.35
2646 3433 5.064707 GTGCTAGTTTTCTGTCAAACACTCA 59.935 40.000 0.00 1.39 38.86 3.41
2647 3434 5.064707 TGTGCTAGTTTTCTGTCAAACACTC 59.935 40.000 0.00 1.23 38.86 3.51
2648 3435 4.941263 TGTGCTAGTTTTCTGTCAAACACT 59.059 37.500 0.00 0.00 38.86 3.55
2649 3436 5.229921 TGTGCTAGTTTTCTGTCAAACAC 57.770 39.130 0.00 0.00 38.86 3.32
2650 3437 5.888691 TTGTGCTAGTTTTCTGTCAAACA 57.111 34.783 0.00 0.00 38.86 2.83
2651 3438 6.972328 TCAATTGTGCTAGTTTTCTGTCAAAC 59.028 34.615 5.13 0.00 36.97 2.93
2652 3439 7.094508 TCAATTGTGCTAGTTTTCTGTCAAA 57.905 32.000 5.13 0.00 0.00 2.69
2653 3440 6.238731 CCTCAATTGTGCTAGTTTTCTGTCAA 60.239 38.462 5.13 0.00 0.00 3.18
2654 3441 5.239306 CCTCAATTGTGCTAGTTTTCTGTCA 59.761 40.000 5.13 0.00 0.00 3.58
2655 3442 5.239525 ACCTCAATTGTGCTAGTTTTCTGTC 59.760 40.000 5.13 0.00 0.00 3.51
2656 3443 5.133221 ACCTCAATTGTGCTAGTTTTCTGT 58.867 37.500 5.13 0.00 0.00 3.41
2657 3444 5.695851 ACCTCAATTGTGCTAGTTTTCTG 57.304 39.130 5.13 0.00 0.00 3.02
2658 3445 5.049405 CGAACCTCAATTGTGCTAGTTTTCT 60.049 40.000 5.13 0.00 0.00 2.52
2659 3446 5.147162 CGAACCTCAATTGTGCTAGTTTTC 58.853 41.667 5.13 0.60 0.00 2.29
2660 3447 4.556699 GCGAACCTCAATTGTGCTAGTTTT 60.557 41.667 5.13 0.00 0.00 2.43
2661 3448 3.058224 GCGAACCTCAATTGTGCTAGTTT 60.058 43.478 5.13 0.00 0.00 2.66
2662 3449 2.484264 GCGAACCTCAATTGTGCTAGTT 59.516 45.455 5.13 3.12 0.00 2.24
2663 3450 2.076863 GCGAACCTCAATTGTGCTAGT 58.923 47.619 5.13 0.00 0.00 2.57
2664 3451 1.061131 CGCGAACCTCAATTGTGCTAG 59.939 52.381 0.00 0.00 0.00 3.42
2665 3452 1.075542 CGCGAACCTCAATTGTGCTA 58.924 50.000 0.00 0.00 0.00 3.49
2666 3453 1.868997 CGCGAACCTCAATTGTGCT 59.131 52.632 0.00 0.00 0.00 4.40
2667 3454 1.797537 GCGCGAACCTCAATTGTGC 60.798 57.895 12.10 1.12 0.00 4.57
2668 3455 0.179215 GAGCGCGAACCTCAATTGTG 60.179 55.000 12.10 2.61 0.00 3.33
2669 3456 0.320771 AGAGCGCGAACCTCAATTGT 60.321 50.000 12.10 0.00 0.00 2.71
2670 3457 0.371645 GAGAGCGCGAACCTCAATTG 59.628 55.000 12.10 0.00 0.00 2.32
2671 3458 0.037326 TGAGAGCGCGAACCTCAATT 60.037 50.000 12.10 0.00 34.38 2.32
2672 3459 0.176680 ATGAGAGCGCGAACCTCAAT 59.823 50.000 22.54 10.55 39.94 2.57
2673 3460 0.815095 TATGAGAGCGCGAACCTCAA 59.185 50.000 22.54 13.03 39.94 3.02
2674 3461 0.382158 CTATGAGAGCGCGAACCTCA 59.618 55.000 21.51 21.51 40.68 3.86
2675 3462 0.663688 TCTATGAGAGCGCGAACCTC 59.336 55.000 12.10 13.03 0.00 3.85
2676 3463 1.103803 TTCTATGAGAGCGCGAACCT 58.896 50.000 12.10 1.87 0.00 3.50
2677 3464 1.201343 GTTCTATGAGAGCGCGAACC 58.799 55.000 12.10 0.00 0.00 3.62
2678 3465 2.196295 AGTTCTATGAGAGCGCGAAC 57.804 50.000 12.10 12.35 35.44 3.95
2679 3466 2.943690 AGTAGTTCTATGAGAGCGCGAA 59.056 45.455 12.10 0.00 30.21 4.70
2680 3467 2.562635 AGTAGTTCTATGAGAGCGCGA 58.437 47.619 12.10 0.00 30.21 5.87
2681 3468 3.293262 GAAGTAGTTCTATGAGAGCGCG 58.707 50.000 0.00 0.00 30.21 6.86
2682 3469 3.316868 AGGAAGTAGTTCTATGAGAGCGC 59.683 47.826 10.10 0.00 30.21 5.92
2683 3470 5.333492 CGTAGGAAGTAGTTCTATGAGAGCG 60.333 48.000 10.10 1.65 30.21 5.03
2684 3471 5.561339 GCGTAGGAAGTAGTTCTATGAGAGC 60.561 48.000 10.10 4.21 32.72 4.09
2685 3472 5.049267 GGCGTAGGAAGTAGTTCTATGAGAG 60.049 48.000 10.10 0.00 32.72 3.20
2686 3473 4.820716 GGCGTAGGAAGTAGTTCTATGAGA 59.179 45.833 10.10 0.00 32.72 3.27
2687 3474 4.023021 GGGCGTAGGAAGTAGTTCTATGAG 60.023 50.000 10.10 0.84 32.72 2.90
2688 3475 3.887716 GGGCGTAGGAAGTAGTTCTATGA 59.112 47.826 10.10 0.00 32.72 2.15
2689 3476 3.005578 GGGGCGTAGGAAGTAGTTCTATG 59.994 52.174 10.10 7.24 32.72 2.23
2690 3477 3.229293 GGGGCGTAGGAAGTAGTTCTAT 58.771 50.000 10.10 2.61 32.72 1.98
2691 3478 2.025037 TGGGGCGTAGGAAGTAGTTCTA 60.025 50.000 10.10 0.00 32.72 2.10
2692 3479 1.272872 TGGGGCGTAGGAAGTAGTTCT 60.273 52.381 10.10 0.00 32.72 3.01
2693 3480 1.188863 TGGGGCGTAGGAAGTAGTTC 58.811 55.000 1.31 1.31 0.00 3.01
2694 3481 1.485066 CATGGGGCGTAGGAAGTAGTT 59.515 52.381 0.00 0.00 0.00 2.24
2695 3482 1.120530 CATGGGGCGTAGGAAGTAGT 58.879 55.000 0.00 0.00 0.00 2.73
2696 3483 1.410004 TCATGGGGCGTAGGAAGTAG 58.590 55.000 0.00 0.00 0.00 2.57
2697 3484 2.097110 ATCATGGGGCGTAGGAAGTA 57.903 50.000 0.00 0.00 0.00 2.24
2698 3485 2.097110 TATCATGGGGCGTAGGAAGT 57.903 50.000 0.00 0.00 0.00 3.01
2699 3486 4.466370 TCTTATATCATGGGGCGTAGGAAG 59.534 45.833 0.00 0.00 0.00 3.46
2700 3487 4.422057 TCTTATATCATGGGGCGTAGGAA 58.578 43.478 0.00 0.00 0.00 3.36
2701 3488 4.055710 TCTTATATCATGGGGCGTAGGA 57.944 45.455 0.00 0.00 0.00 2.94
2702 3489 4.504858 GTTCTTATATCATGGGGCGTAGG 58.495 47.826 0.00 0.00 0.00 3.18
2703 3490 4.174009 CGTTCTTATATCATGGGGCGTAG 58.826 47.826 0.00 0.00 0.00 3.51
2704 3491 3.575256 ACGTTCTTATATCATGGGGCGTA 59.425 43.478 0.00 0.00 0.00 4.42
2705 3492 2.367567 ACGTTCTTATATCATGGGGCGT 59.632 45.455 0.00 0.00 0.00 5.68
2706 3493 3.040147 ACGTTCTTATATCATGGGGCG 57.960 47.619 0.00 0.00 0.00 6.13
2707 3494 5.767816 AAAACGTTCTTATATCATGGGGC 57.232 39.130 0.00 0.00 0.00 5.80
2708 3495 7.148154 TGTCAAAAACGTTCTTATATCATGGGG 60.148 37.037 0.00 0.00 0.00 4.96
2709 3496 7.696453 GTGTCAAAAACGTTCTTATATCATGGG 59.304 37.037 0.00 0.00 0.00 4.00
2710 3497 8.450964 AGTGTCAAAAACGTTCTTATATCATGG 58.549 33.333 0.00 0.00 0.00 3.66
2713 3500 9.478768 TGTAGTGTCAAAAACGTTCTTATATCA 57.521 29.630 0.00 0.00 0.00 2.15
2714 3501 9.737025 GTGTAGTGTCAAAAACGTTCTTATATC 57.263 33.333 0.00 0.00 0.00 1.63
2715 3502 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
2716 3503 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
2717 3504 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
2718 3505 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2719 3506 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2720 3507 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2721 3508 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2722 3509 9.748708 TTATACTAGTGTAGTGTCAAAAACGTT 57.251 29.630 5.39 0.00 39.81 3.99
2723 3510 9.748708 TTTATACTAGTGTAGTGTCAAAAACGT 57.251 29.630 5.39 0.00 39.81 3.99
2750 3537 8.950210 CCTCCATCGCATAATATAAGAATGTTT 58.050 33.333 0.00 0.00 0.00 2.83
2751 3538 7.554118 CCCTCCATCGCATAATATAAGAATGTT 59.446 37.037 0.00 0.00 0.00 2.71
2752 3539 7.050377 CCCTCCATCGCATAATATAAGAATGT 58.950 38.462 0.00 0.00 0.00 2.71
2753 3540 7.275183 TCCCTCCATCGCATAATATAAGAATG 58.725 38.462 0.00 0.00 0.00 2.67
2754 3541 7.126421 ACTCCCTCCATCGCATAATATAAGAAT 59.874 37.037 0.00 0.00 0.00 2.40
2755 3542 6.440647 ACTCCCTCCATCGCATAATATAAGAA 59.559 38.462 0.00 0.00 0.00 2.52
2756 3543 5.958380 ACTCCCTCCATCGCATAATATAAGA 59.042 40.000 0.00 0.00 0.00 2.10
2757 3544 6.227298 ACTCCCTCCATCGCATAATATAAG 57.773 41.667 0.00 0.00 0.00 1.73
2758 3545 6.097839 GGTACTCCCTCCATCGCATAATATAA 59.902 42.308 0.00 0.00 0.00 0.98
2759 3546 5.597182 GGTACTCCCTCCATCGCATAATATA 59.403 44.000 0.00 0.00 0.00 0.86
2760 3547 4.406003 GGTACTCCCTCCATCGCATAATAT 59.594 45.833 0.00 0.00 0.00 1.28
2761 3548 3.767673 GGTACTCCCTCCATCGCATAATA 59.232 47.826 0.00 0.00 0.00 0.98
2762 3549 2.567615 GGTACTCCCTCCATCGCATAAT 59.432 50.000 0.00 0.00 0.00 1.28
2763 3550 1.968493 GGTACTCCCTCCATCGCATAA 59.032 52.381 0.00 0.00 0.00 1.90
2764 3551 1.133294 TGGTACTCCCTCCATCGCATA 60.133 52.381 0.00 0.00 0.00 3.14
2765 3552 0.398522 TGGTACTCCCTCCATCGCAT 60.399 55.000 0.00 0.00 0.00 4.73
2766 3553 0.398522 ATGGTACTCCCTCCATCGCA 60.399 55.000 0.00 0.00 39.92 5.10
2767 3554 0.759346 AATGGTACTCCCTCCATCGC 59.241 55.000 0.00 0.00 42.73 4.58
2768 3555 3.560636 AAAATGGTACTCCCTCCATCG 57.439 47.619 0.00 0.00 42.73 3.84
2769 3556 7.712204 TTTTAAAAATGGTACTCCCTCCATC 57.288 36.000 0.00 0.00 42.73 3.51
2816 3603 9.583765 GGTAGTTTTTAGTCACGAGATTCTAAT 57.416 33.333 0.00 0.00 0.00 1.73
2817 3604 8.579006 TGGTAGTTTTTAGTCACGAGATTCTAA 58.421 33.333 0.00 0.00 0.00 2.10
2818 3605 8.025445 GTGGTAGTTTTTAGTCACGAGATTCTA 58.975 37.037 0.00 0.00 0.00 2.10
2819 3606 6.867293 GTGGTAGTTTTTAGTCACGAGATTCT 59.133 38.462 0.00 0.00 0.00 2.40
2820 3607 6.867293 AGTGGTAGTTTTTAGTCACGAGATTC 59.133 38.462 0.00 0.00 0.00 2.52
2821 3608 6.756221 AGTGGTAGTTTTTAGTCACGAGATT 58.244 36.000 0.00 0.00 0.00 2.40
2822 3609 6.342338 AGTGGTAGTTTTTAGTCACGAGAT 57.658 37.500 0.00 0.00 0.00 2.75
2823 3610 5.779529 AGTGGTAGTTTTTAGTCACGAGA 57.220 39.130 0.00 0.00 0.00 4.04
2824 3611 6.345565 CGAAAGTGGTAGTTTTTAGTCACGAG 60.346 42.308 0.00 0.00 0.00 4.18
2825 3612 5.459762 CGAAAGTGGTAGTTTTTAGTCACGA 59.540 40.000 0.00 0.00 0.00 4.35
2826 3613 5.459762 TCGAAAGTGGTAGTTTTTAGTCACG 59.540 40.000 0.00 0.00 0.00 4.35
2827 3614 6.833342 TCGAAAGTGGTAGTTTTTAGTCAC 57.167 37.500 0.00 0.00 0.00 3.67
2828 3615 7.846644 TTTCGAAAGTGGTAGTTTTTAGTCA 57.153 32.000 6.47 0.00 0.00 3.41
2829 3616 9.726232 ATTTTTCGAAAGTGGTAGTTTTTAGTC 57.274 29.630 10.98 0.00 0.00 2.59
2830 3617 9.511144 CATTTTTCGAAAGTGGTAGTTTTTAGT 57.489 29.630 10.98 0.00 0.00 2.24
2831 3618 8.964150 CCATTTTTCGAAAGTGGTAGTTTTTAG 58.036 33.333 24.96 6.46 0.00 1.85
2832 3619 7.435784 GCCATTTTTCGAAAGTGGTAGTTTTTA 59.564 33.333 29.49 6.22 31.82 1.52
2833 3620 6.256975 GCCATTTTTCGAAAGTGGTAGTTTTT 59.743 34.615 29.49 2.51 31.82 1.94
2834 3621 5.751509 GCCATTTTTCGAAAGTGGTAGTTTT 59.248 36.000 29.49 3.60 31.82 2.43
2835 3622 5.286438 GCCATTTTTCGAAAGTGGTAGTTT 58.714 37.500 29.49 4.80 31.82 2.66
2836 3623 4.261867 GGCCATTTTTCGAAAGTGGTAGTT 60.262 41.667 29.49 5.98 31.82 2.24
2837 3624 3.254903 GGCCATTTTTCGAAAGTGGTAGT 59.745 43.478 29.49 7.28 31.82 2.73
2838 3625 3.254657 TGGCCATTTTTCGAAAGTGGTAG 59.745 43.478 29.49 15.41 31.82 3.18
2839 3626 3.223435 TGGCCATTTTTCGAAAGTGGTA 58.777 40.909 29.49 21.57 31.82 3.25
2840 3627 2.035632 TGGCCATTTTTCGAAAGTGGT 58.964 42.857 29.49 11.39 31.82 4.16
2841 3628 2.035832 ACTGGCCATTTTTCGAAAGTGG 59.964 45.455 27.21 27.21 0.00 4.00
2842 3629 3.369546 ACTGGCCATTTTTCGAAAGTG 57.630 42.857 5.51 13.30 0.00 3.16
2843 3630 4.400529 AAACTGGCCATTTTTCGAAAGT 57.599 36.364 14.91 0.00 0.00 2.66
2844 3631 5.768317 TCTAAACTGGCCATTTTTCGAAAG 58.232 37.500 24.23 15.54 0.00 2.62
2845 3632 5.776173 TCTAAACTGGCCATTTTTCGAAA 57.224 34.783 24.23 6.47 0.00 3.46
2846 3633 5.533154 TCTTCTAAACTGGCCATTTTTCGAA 59.467 36.000 24.23 22.31 0.00 3.71
2847 3634 5.067273 TCTTCTAAACTGGCCATTTTTCGA 58.933 37.500 24.23 17.78 0.00 3.71
2848 3635 5.371115 TCTTCTAAACTGGCCATTTTTCG 57.629 39.130 24.23 16.06 0.00 3.46
2849 3636 9.705290 TTAAATCTTCTAAACTGGCCATTTTTC 57.295 29.630 24.23 0.00 0.00 2.29
2852 3639 9.657419 CATTTAAATCTTCTAAACTGGCCATTT 57.343 29.630 5.51 3.40 0.00 2.32
2853 3640 8.815912 ACATTTAAATCTTCTAAACTGGCCATT 58.184 29.630 5.51 0.00 0.00 3.16
2854 3641 8.253113 CACATTTAAATCTTCTAAACTGGCCAT 58.747 33.333 5.51 0.00 0.00 4.40
2855 3642 7.232534 ACACATTTAAATCTTCTAAACTGGCCA 59.767 33.333 4.71 4.71 0.00 5.36
2856 3643 7.602753 ACACATTTAAATCTTCTAAACTGGCC 58.397 34.615 0.00 0.00 0.00 5.36
2857 3644 9.476202 AAACACATTTAAATCTTCTAAACTGGC 57.524 29.630 0.00 0.00 0.00 4.85
2867 3654 9.075519 CGCATGTCATAAACACATTTAAATCTT 57.924 29.630 0.00 0.00 41.75 2.40
2868 3655 7.701924 CCGCATGTCATAAACACATTTAAATCT 59.298 33.333 0.00 0.00 41.75 2.40
2869 3656 7.043458 CCCGCATGTCATAAACACATTTAAATC 60.043 37.037 0.00 0.00 41.75 2.17
2870 3657 6.756074 CCCGCATGTCATAAACACATTTAAAT 59.244 34.615 0.00 0.00 41.75 1.40
2871 3658 6.096036 CCCGCATGTCATAAACACATTTAAA 58.904 36.000 0.00 0.00 41.75 1.52
2872 3659 5.393569 CCCCGCATGTCATAAACACATTTAA 60.394 40.000 0.00 0.00 41.75 1.52
2873 3660 4.097135 CCCCGCATGTCATAAACACATTTA 59.903 41.667 0.00 0.00 41.75 1.40
2874 3661 3.119173 CCCCGCATGTCATAAACACATTT 60.119 43.478 0.00 0.00 41.75 2.32
2875 3662 2.426738 CCCCGCATGTCATAAACACATT 59.573 45.455 0.00 0.00 41.75 2.71
2876 3663 2.023673 CCCCGCATGTCATAAACACAT 58.976 47.619 0.00 0.00 41.75 3.21
2877 3664 1.458398 CCCCGCATGTCATAAACACA 58.542 50.000 0.00 0.00 41.75 3.72
2878 3665 0.100503 GCCCCGCATGTCATAAACAC 59.899 55.000 0.00 0.00 41.75 3.32
2879 3666 1.034838 GGCCCCGCATGTCATAAACA 61.035 55.000 0.00 0.00 43.51 2.83
2880 3667 1.733526 GGCCCCGCATGTCATAAAC 59.266 57.895 0.00 0.00 0.00 2.01
2881 3668 1.821759 CGGCCCCGCATGTCATAAA 60.822 57.895 0.00 0.00 0.00 1.40
2882 3669 2.203139 CGGCCCCGCATGTCATAA 60.203 61.111 0.00 0.00 0.00 1.90
2883 3670 3.454587 GACGGCCCCGCATGTCATA 62.455 63.158 6.63 0.00 44.19 2.15
2884 3671 4.856801 GACGGCCCCGCATGTCAT 62.857 66.667 6.63 0.00 44.19 3.06
2895 3682 4.767255 CAGCCCTGACAGACGGCC 62.767 72.222 16.51 0.00 44.13 6.13
2896 3683 3.695606 TCAGCCCTGACAGACGGC 61.696 66.667 13.29 13.29 43.35 5.68
2904 3691 3.680786 CCGTCACGTCAGCCCTGA 61.681 66.667 0.00 0.00 37.24 3.86
2905 3692 4.742201 CCCGTCACGTCAGCCCTG 62.742 72.222 0.00 0.00 0.00 4.45
2906 3693 4.988716 TCCCGTCACGTCAGCCCT 62.989 66.667 0.00 0.00 0.00 5.19
2907 3694 3.524648 TTTCCCGTCACGTCAGCCC 62.525 63.158 0.00 0.00 0.00 5.19
2908 3695 2.027625 CTTTCCCGTCACGTCAGCC 61.028 63.158 0.00 0.00 0.00 4.85
2909 3696 1.282930 GACTTTCCCGTCACGTCAGC 61.283 60.000 0.00 0.00 34.11 4.26
2910 3697 0.031585 TGACTTTCCCGTCACGTCAG 59.968 55.000 0.00 0.00 38.89 3.51
2911 3698 0.460722 TTGACTTTCCCGTCACGTCA 59.539 50.000 0.00 0.00 43.11 4.35
2912 3699 0.857287 GTTGACTTTCCCGTCACGTC 59.143 55.000 0.00 0.00 43.11 4.34
2913 3700 0.462789 AGTTGACTTTCCCGTCACGT 59.537 50.000 0.00 0.00 43.11 4.49
2914 3701 1.525619 GAAGTTGACTTTCCCGTCACG 59.474 52.381 0.00 0.00 43.11 4.35
2915 3702 1.525619 CGAAGTTGACTTTCCCGTCAC 59.474 52.381 0.00 0.00 43.11 3.67
2916 3703 1.137479 ACGAAGTTGACTTTCCCGTCA 59.863 47.619 0.00 0.00 37.78 4.35
2917 3704 1.861971 ACGAAGTTGACTTTCCCGTC 58.138 50.000 0.00 0.00 37.78 4.79
2941 3728 5.809719 AACGGTCAACTTAACGGTAAAAA 57.190 34.783 0.00 0.00 30.95 1.94
2942 3729 6.703607 TCATAACGGTCAACTTAACGGTAAAA 59.296 34.615 0.00 0.00 31.83 1.52
2943 3730 6.145371 GTCATAACGGTCAACTTAACGGTAAA 59.855 38.462 0.00 0.00 31.83 2.01
2944 3731 5.633182 GTCATAACGGTCAACTTAACGGTAA 59.367 40.000 0.00 0.00 31.83 2.85
2945 3732 5.160641 GTCATAACGGTCAACTTAACGGTA 58.839 41.667 0.00 0.00 32.67 4.02
2946 3733 3.989817 GTCATAACGGTCAACTTAACGGT 59.010 43.478 0.00 0.00 0.00 4.83
2947 3734 3.989167 TGTCATAACGGTCAACTTAACGG 59.011 43.478 0.00 0.00 0.00 4.44
2948 3735 4.090930 CCTGTCATAACGGTCAACTTAACG 59.909 45.833 0.00 0.00 0.00 3.18
2949 3736 4.992951 ACCTGTCATAACGGTCAACTTAAC 59.007 41.667 0.00 0.00 29.93 2.01
2950 3737 4.992319 CACCTGTCATAACGGTCAACTTAA 59.008 41.667 0.00 0.00 32.39 1.85
2951 3738 4.561938 CCACCTGTCATAACGGTCAACTTA 60.562 45.833 0.00 0.00 32.39 2.24
2952 3739 3.399330 CACCTGTCATAACGGTCAACTT 58.601 45.455 0.00 0.00 32.39 2.66
2953 3740 2.289444 CCACCTGTCATAACGGTCAACT 60.289 50.000 0.00 0.00 32.39 3.16
2954 3741 2.073816 CCACCTGTCATAACGGTCAAC 58.926 52.381 0.00 0.00 32.39 3.18
2955 3742 1.002659 CCCACCTGTCATAACGGTCAA 59.997 52.381 0.00 0.00 32.39 3.18
2956 3743 0.611200 CCCACCTGTCATAACGGTCA 59.389 55.000 0.00 0.00 32.39 4.02
2957 3744 0.743345 GCCCACCTGTCATAACGGTC 60.743 60.000 0.00 0.00 32.39 4.79
2958 3745 1.298667 GCCCACCTGTCATAACGGT 59.701 57.895 0.00 0.00 34.16 4.83
2959 3746 1.451387 GGCCCACCTGTCATAACGG 60.451 63.158 0.00 0.00 0.00 4.44
2960 3747 1.451387 GGGCCCACCTGTCATAACG 60.451 63.158 19.95 0.00 35.85 3.18
2961 3748 1.076995 GGGGCCCACCTGTCATAAC 60.077 63.158 26.86 0.00 40.03 1.89
2962 3749 1.542628 TGGGGCCCACCTGTCATAA 60.543 57.895 24.76 0.00 40.03 1.90
2963 3750 2.126142 TGGGGCCCACCTGTCATA 59.874 61.111 24.76 0.00 40.03 2.15
2973 3760 2.588856 GATACTGACGTGTGGGGCCC 62.589 65.000 18.17 18.17 0.00 5.80
2974 3761 1.153429 GATACTGACGTGTGGGGCC 60.153 63.158 0.00 0.00 0.00 5.80
2975 3762 1.108776 TAGATACTGACGTGTGGGGC 58.891 55.000 0.00 0.00 0.00 5.80
2990 3777 8.877864 ATACGATGAGGAAGAAGAAGATAGAT 57.122 34.615 0.00 0.00 0.00 1.98
3002 3789 7.201696 GCCTAAGAGAGATATACGATGAGGAAG 60.202 44.444 0.00 0.00 0.00 3.46
3003 3790 6.600032 GCCTAAGAGAGATATACGATGAGGAA 59.400 42.308 0.00 0.00 0.00 3.36
3009 3796 8.354711 TGAAATGCCTAAGAGAGATATACGAT 57.645 34.615 0.00 0.00 0.00 3.73
3010 3797 7.761038 TGAAATGCCTAAGAGAGATATACGA 57.239 36.000 0.00 0.00 0.00 3.43
3011 3798 7.867909 TGTTGAAATGCCTAAGAGAGATATACG 59.132 37.037 0.00 0.00 0.00 3.06
3012 3799 9.547753 TTGTTGAAATGCCTAAGAGAGATATAC 57.452 33.333 0.00 0.00 0.00 1.47
3048 3835 2.356313 CGACAACAGCGCTCACCT 60.356 61.111 7.13 0.00 0.00 4.00
3056 3855 1.781555 CGACATGGACGACAACAGC 59.218 57.895 8.49 0.00 0.00 4.40
3060 3859 1.068250 TGTGCGACATGGACGACAA 59.932 52.632 16.39 1.27 42.78 3.18
3093 3892 1.801332 CCTCCGTCATCGTCGACTT 59.199 57.895 14.70 0.00 33.54 3.01
3203 4002 3.315142 GAGCATCACCACGGCCAGA 62.315 63.158 2.24 0.00 33.17 3.86
3329 4236 2.825836 CTGATGTTCCCCAGCGGC 60.826 66.667 0.00 0.00 29.93 6.53
3334 4241 0.623324 CCCTACCCTGATGTTCCCCA 60.623 60.000 0.00 0.00 0.00 4.96
3434 4341 1.642952 GGACAAGCAGTAGCAGCAGC 61.643 60.000 0.00 0.00 45.49 5.25
3435 4342 1.023513 GGGACAAGCAGTAGCAGCAG 61.024 60.000 0.00 0.00 45.49 4.24
3436 4343 1.003355 GGGACAAGCAGTAGCAGCA 60.003 57.895 0.00 0.00 45.49 4.41
3437 4344 1.746991 GGGGACAAGCAGTAGCAGC 60.747 63.158 0.00 0.00 45.49 5.25
3438 4345 1.679311 TGGGGACAAGCAGTAGCAG 59.321 57.895 0.00 0.00 38.46 4.24
3439 4346 3.899371 TGGGGACAAGCAGTAGCA 58.101 55.556 0.00 0.00 38.46 3.49
3450 4357 3.661648 AGGGGCACACATGGGGAC 61.662 66.667 0.00 0.00 0.00 4.46
3451 4358 3.660571 CAGGGGCACACATGGGGA 61.661 66.667 0.00 0.00 0.00 4.81
3452 4359 3.528217 AACAGGGGCACACATGGGG 62.528 63.158 0.00 0.00 0.00 4.96
3453 4360 2.118076 AACAGGGGCACACATGGG 59.882 61.111 0.00 0.00 0.00 4.00
3454 4361 1.114722 AACAACAGGGGCACACATGG 61.115 55.000 0.00 0.00 0.00 3.66
3455 4362 0.032403 CAACAACAGGGGCACACATG 59.968 55.000 0.00 0.00 0.00 3.21
3456 4363 1.747325 GCAACAACAGGGGCACACAT 61.747 55.000 0.00 0.00 0.00 3.21
3457 4364 2.422231 GCAACAACAGGGGCACACA 61.422 57.895 0.00 0.00 0.00 3.72
3458 4365 0.821711 TAGCAACAACAGGGGCACAC 60.822 55.000 0.00 0.00 0.00 3.82
3459 4366 0.106469 TTAGCAACAACAGGGGCACA 60.106 50.000 0.00 0.00 0.00 4.57
3460 4367 1.256812 ATTAGCAACAACAGGGGCAC 58.743 50.000 0.00 0.00 0.00 5.01
3461 4368 1.617850 CAATTAGCAACAACAGGGGCA 59.382 47.619 0.00 0.00 0.00 5.36
3462 4369 1.618343 ACAATTAGCAACAACAGGGGC 59.382 47.619 0.00 0.00 0.00 5.80
3463 4370 3.069443 ACAACAATTAGCAACAACAGGGG 59.931 43.478 0.00 0.00 0.00 4.79
3464 4371 4.050553 CACAACAATTAGCAACAACAGGG 58.949 43.478 0.00 0.00 0.00 4.45
3465 4372 4.739716 GTCACAACAATTAGCAACAACAGG 59.260 41.667 0.00 0.00 0.00 4.00
3466 4373 4.739716 GGTCACAACAATTAGCAACAACAG 59.260 41.667 0.00 0.00 0.00 3.16
3467 4374 4.400884 AGGTCACAACAATTAGCAACAACA 59.599 37.500 0.00 0.00 0.00 3.33
3468 4375 4.932146 AGGTCACAACAATTAGCAACAAC 58.068 39.130 0.00 0.00 0.00 3.32
3469 4376 5.587289 GAAGGTCACAACAATTAGCAACAA 58.413 37.500 0.00 0.00 0.00 2.83
3470 4377 4.260990 CGAAGGTCACAACAATTAGCAACA 60.261 41.667 0.00 0.00 0.00 3.33
3471 4378 4.219033 CGAAGGTCACAACAATTAGCAAC 58.781 43.478 0.00 0.00 0.00 4.17
3472 4379 3.304391 GCGAAGGTCACAACAATTAGCAA 60.304 43.478 0.00 0.00 30.16 3.91
3473 4380 2.225491 GCGAAGGTCACAACAATTAGCA 59.775 45.455 0.00 0.00 30.16 3.49
3474 4381 2.484264 AGCGAAGGTCACAACAATTAGC 59.516 45.455 0.00 0.00 0.00 3.09
3475 4382 3.667960 GCAGCGAAGGTCACAACAATTAG 60.668 47.826 0.00 0.00 33.74 1.73
3476 4383 2.225491 GCAGCGAAGGTCACAACAATTA 59.775 45.455 0.00 0.00 33.74 1.40
3477 4384 1.001378 GCAGCGAAGGTCACAACAATT 60.001 47.619 0.00 0.00 33.74 2.32
3478 4385 0.593128 GCAGCGAAGGTCACAACAAT 59.407 50.000 0.00 0.00 33.74 2.71
3479 4386 0.463654 AGCAGCGAAGGTCACAACAA 60.464 50.000 0.00 0.00 33.74 2.83
3480 4387 1.146041 AGCAGCGAAGGTCACAACA 59.854 52.632 0.00 0.00 33.74 3.33
3481 4388 1.571460 CAGCAGCGAAGGTCACAAC 59.429 57.895 0.00 0.00 33.74 3.32
3482 4389 2.253758 GCAGCAGCGAAGGTCACAA 61.254 57.895 0.00 0.00 33.74 3.33
3483 4390 2.666190 GCAGCAGCGAAGGTCACA 60.666 61.111 0.00 0.00 33.74 3.58
3497 4404 4.112341 GCCAGCAAAGGCGAGCAG 62.112 66.667 0.00 0.00 46.12 4.24
3504 4411 1.455383 AACTTCACGGCCAGCAAAGG 61.455 55.000 2.24 0.00 0.00 3.11
3505 4412 2.032981 AACTTCACGGCCAGCAAAG 58.967 52.632 2.24 2.95 0.00 2.77
3506 4413 4.251246 AACTTCACGGCCAGCAAA 57.749 50.000 2.24 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.