Multiple sequence alignment - TraesCS6D01G118500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G118500 chr6D 100.000 2903 0 0 1 2903 84032673 84029771 0.000000e+00 5361.0
1 TraesCS6D01G118500 chr6D 83.578 2314 173 76 542 2734 83101306 83103533 0.000000e+00 1977.0
2 TraesCS6D01G118500 chr6D 87.832 1734 112 31 335 1985 83551715 83549998 0.000000e+00 1941.0
3 TraesCS6D01G118500 chr6D 97.541 244 4 1 1 242 84060970 84060727 1.610000e-112 416.0
4 TraesCS6D01G118500 chr6D 88.603 272 27 2 2514 2785 83544673 83544406 7.760000e-86 327.0
5 TraesCS6D01G118500 chr6D 89.655 203 10 6 2540 2741 83114226 83114418 6.210000e-62 248.0
6 TraesCS6D01G118500 chr6D 92.143 140 10 1 2765 2903 141130977 141130838 2.280000e-46 196.0
7 TraesCS6D01G118500 chr6D 91.603 131 10 1 2384 2513 83544839 83544709 2.300000e-41 180.0
8 TraesCS6D01G118500 chr6D 98.485 66 1 0 2383 2448 83112709 83112774 1.830000e-22 117.0
9 TraesCS6D01G118500 chr6D 84.746 118 9 6 1970 2083 83549971 83549859 3.060000e-20 110.0
10 TraesCS6D01G118500 chr6D 90.476 63 3 3 2119 2178 83549861 83549799 2.400000e-11 80.5
11 TraesCS6D01G118500 chr6D 91.667 48 4 0 1742 1789 84030890 84030843 1.870000e-07 67.6
12 TraesCS6D01G118500 chr6A 88.209 1569 103 31 625 2162 100179987 100181504 0.000000e+00 1797.0
13 TraesCS6D01G118500 chr6A 88.728 1313 94 16 858 2161 100765959 100764692 0.000000e+00 1555.0
14 TraesCS6D01G118500 chr6A 90.723 1121 87 6 858 1972 100812694 100811585 0.000000e+00 1478.0
15 TraesCS6D01G118500 chr6A 85.386 609 37 13 328 886 100813307 100812701 4.170000e-163 584.0
16 TraesCS6D01G118500 chr6A 86.792 530 32 12 390 886 100766490 100765966 9.090000e-155 556.0
17 TraesCS6D01G118500 chr6A 83.104 509 29 13 2294 2786 100811261 100810794 7.490000e-111 411.0
18 TraesCS6D01G118500 chr6A 83.099 426 25 18 2383 2786 100764558 100764158 7.700000e-91 344.0
19 TraesCS6D01G118500 chr6A 89.175 194 10 5 1885 2070 100811619 100811429 6.260000e-57 231.0
20 TraesCS6D01G118500 chr6A 90.756 119 5 3 2441 2558 100181664 100181777 1.390000e-33 154.0
21 TraesCS6D01G118500 chr6A 84.564 149 19 3 2639 2786 100181916 100182061 8.380000e-31 145.0
22 TraesCS6D01G118500 chr6A 97.368 38 1 0 310 347 100766543 100766506 6.710000e-07 65.8
23 TraesCS6D01G118500 chr6A 94.444 36 0 2 234 269 100766576 100766543 1.000000e-03 54.7
24 TraesCS6D01G118500 chr6B 88.756 1334 103 19 858 2173 158144692 158145996 0.000000e+00 1589.0
25 TraesCS6D01G118500 chr6B 91.806 1135 82 7 858 1985 159408295 159407165 0.000000e+00 1570.0
26 TraesCS6D01G118500 chr6B 90.388 1134 95 8 858 1981 159599880 159598751 0.000000e+00 1478.0
27 TraesCS6D01G118500 chr6B 85.843 664 34 15 282 886 159408964 159408302 0.000000e+00 651.0
28 TraesCS6D01G118500 chr6B 87.554 466 27 6 451 886 159600351 159599887 7.180000e-141 510.0
29 TraesCS6D01G118500 chr6B 91.450 269 11 3 1885 2147 159598800 159598538 2.750000e-95 359.0
30 TraesCS6D01G118500 chr6B 90.580 276 13 5 623 886 158144411 158144685 1.280000e-93 353.0
31 TraesCS6D01G118500 chr6B 90.086 232 16 4 2514 2744 159406134 159405909 7.870000e-76 294.0
32 TraesCS6D01G118500 chr6B 85.774 239 18 6 2557 2780 159598536 159598299 3.740000e-59 239.0
33 TraesCS6D01G118500 chr6B 82.215 298 27 13 1885 2178 159407216 159406941 1.740000e-57 233.0
34 TraesCS6D01G118500 chr6B 96.899 129 1 3 234 361 159600550 159600424 2.270000e-51 213.0
35 TraesCS6D01G118500 chr6B 92.157 51 4 0 1778 1828 158145566 158145616 4.010000e-09 73.1
36 TraesCS6D01G118500 chr6B 100.000 33 0 0 2249 2281 158146102 158146134 8.690000e-06 62.1
37 TraesCS6D01G118500 chr5D 97.531 243 4 1 1 241 83338555 83338797 5.790000e-112 414.0
38 TraesCS6D01G118500 chr4D 97.143 245 4 1 1 242 48443976 48443732 7.490000e-111 411.0
39 TraesCS6D01G118500 chr4D 97.131 244 5 1 1 242 269315098 269314855 7.490000e-111 411.0
40 TraesCS6D01G118500 chr4D 96.735 245 5 2 1 242 486597887 486598131 3.480000e-109 405.0
41 TraesCS6D01G118500 chr4D 95.652 253 7 3 1 249 331790579 331790831 1.250000e-108 403.0
42 TraesCS6D01G118500 chr3D 96.774 248 5 1 1 245 287679098 287678851 7.490000e-111 411.0
43 TraesCS6D01G118500 chr3D 97.131 244 5 1 1 242 287689164 287688921 7.490000e-111 411.0
44 TraesCS6D01G118500 chr1D 94.961 258 7 5 1 254 251059872 251060127 1.620000e-107 399.0
45 TraesCS6D01G118500 chr3A 96.124 129 5 0 2775 2903 89152757 89152629 8.150000e-51 211.0
46 TraesCS6D01G118500 chr3A 94.737 133 5 2 2772 2903 572592411 572592280 3.790000e-49 206.0
47 TraesCS6D01G118500 chr3A 95.312 128 6 0 2776 2903 492693197 492693070 1.360000e-48 204.0
48 TraesCS6D01G118500 chr3A 92.806 139 5 3 2765 2903 370245878 370246011 2.280000e-46 196.0
49 TraesCS6D01G118500 chr4A 94.074 135 8 0 2769 2903 102867682 102867548 3.790000e-49 206.0
50 TraesCS6D01G118500 chr4A 96.032 126 5 0 2778 2903 570473042 570473167 3.790000e-49 206.0
51 TraesCS6D01G118500 chr3B 93.382 136 7 2 2769 2903 3878162 3878028 1.760000e-47 200.0
52 TraesCS6D01G118500 chr3B 93.284 134 8 1 2771 2903 703118718 703118585 2.280000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G118500 chr6D 84029771 84032673 2902 True 2714.300000 5361 95.833500 1 2903 2 chr6D.!!$R5 2902
1 TraesCS6D01G118500 chr6D 83101306 83103533 2227 False 1977.000000 1977 83.578000 542 2734 1 chr6D.!!$F1 2192
2 TraesCS6D01G118500 chr6D 83549799 83551715 1916 True 710.500000 1941 87.684667 335 2178 3 chr6D.!!$R4 1843
3 TraesCS6D01G118500 chr6A 100179987 100182061 2074 False 698.666667 1797 87.843000 625 2786 3 chr6A.!!$F1 2161
4 TraesCS6D01G118500 chr6A 100810794 100813307 2513 True 676.000000 1478 87.097000 328 2786 4 chr6A.!!$R2 2458
5 TraesCS6D01G118500 chr6A 100764158 100766576 2418 True 515.100000 1555 90.086200 234 2786 5 chr6A.!!$R1 2552
6 TraesCS6D01G118500 chr6B 159405909 159408964 3055 True 687.000000 1570 87.487500 282 2744 4 chr6B.!!$R1 2462
7 TraesCS6D01G118500 chr6B 159598299 159600550 2251 True 559.800000 1478 90.413000 234 2780 5 chr6B.!!$R2 2546
8 TraesCS6D01G118500 chr6B 158144411 158146134 1723 False 519.300000 1589 92.873250 623 2281 4 chr6B.!!$F1 1658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.036306 AAGCCCTAGTTGTGTTCGGG 59.964 55.0 0.0 0.0 37.97 5.14 F
1711 1895 0.107459 GATGAAGGTGGACTGGGAGC 60.107 60.0 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 2051 0.315568 AGCATCGGAGCGACTAATCC 59.684 55.000 0.00 0.0 39.18 3.01 R
2569 3744 1.376086 CACTGCCATGGGTCACAGA 59.624 57.895 20.15 0.0 34.25 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.350071 ATGGCTTGGTGCAAAATCCA 58.650 45.000 8.05 8.05 45.15 3.41
20 21 0.680618 TGGCTTGGTGCAAAATCCAG 59.319 50.000 2.62 0.00 45.15 3.86
21 22 0.968405 GGCTTGGTGCAAAATCCAGA 59.032 50.000 0.00 0.00 45.15 3.86
22 23 1.344114 GGCTTGGTGCAAAATCCAGAA 59.656 47.619 0.00 0.00 45.15 3.02
23 24 2.027837 GGCTTGGTGCAAAATCCAGAAT 60.028 45.455 0.00 0.00 45.15 2.40
24 25 3.195396 GGCTTGGTGCAAAATCCAGAATA 59.805 43.478 0.00 0.00 45.15 1.75
25 26 4.427312 GCTTGGTGCAAAATCCAGAATAG 58.573 43.478 0.00 0.00 42.31 1.73
26 27 4.427312 CTTGGTGCAAAATCCAGAATAGC 58.573 43.478 0.00 0.00 35.05 2.97
27 28 2.760092 TGGTGCAAAATCCAGAATAGCC 59.240 45.455 0.00 0.00 0.00 3.93
28 29 3.026694 GGTGCAAAATCCAGAATAGCCT 58.973 45.455 0.00 0.00 0.00 4.58
29 30 3.067320 GGTGCAAAATCCAGAATAGCCTC 59.933 47.826 0.00 0.00 0.00 4.70
30 31 3.067320 GTGCAAAATCCAGAATAGCCTCC 59.933 47.826 0.00 0.00 0.00 4.30
31 32 3.290710 GCAAAATCCAGAATAGCCTCCA 58.709 45.455 0.00 0.00 0.00 3.86
32 33 3.701040 GCAAAATCCAGAATAGCCTCCAA 59.299 43.478 0.00 0.00 0.00 3.53
33 34 4.160252 GCAAAATCCAGAATAGCCTCCAAA 59.840 41.667 0.00 0.00 0.00 3.28
34 35 5.337491 GCAAAATCCAGAATAGCCTCCAAAA 60.337 40.000 0.00 0.00 0.00 2.44
35 36 6.700352 CAAAATCCAGAATAGCCTCCAAAAA 58.300 36.000 0.00 0.00 0.00 1.94
36 37 7.333323 CAAAATCCAGAATAGCCTCCAAAAAT 58.667 34.615 0.00 0.00 0.00 1.82
37 38 8.477256 CAAAATCCAGAATAGCCTCCAAAAATA 58.523 33.333 0.00 0.00 0.00 1.40
38 39 8.788238 AAATCCAGAATAGCCTCCAAAAATAT 57.212 30.769 0.00 0.00 0.00 1.28
39 40 7.771927 ATCCAGAATAGCCTCCAAAAATATG 57.228 36.000 0.00 0.00 0.00 1.78
40 41 6.910191 TCCAGAATAGCCTCCAAAAATATGA 58.090 36.000 0.00 0.00 0.00 2.15
41 42 7.353525 TCCAGAATAGCCTCCAAAAATATGAA 58.646 34.615 0.00 0.00 0.00 2.57
42 43 7.838696 TCCAGAATAGCCTCCAAAAATATGAAA 59.161 33.333 0.00 0.00 0.00 2.69
43 44 7.922811 CCAGAATAGCCTCCAAAAATATGAAAC 59.077 37.037 0.00 0.00 0.00 2.78
44 45 7.922811 CAGAATAGCCTCCAAAAATATGAAACC 59.077 37.037 0.00 0.00 0.00 3.27
45 46 7.619302 AGAATAGCCTCCAAAAATATGAAACCA 59.381 33.333 0.00 0.00 0.00 3.67
46 47 7.919385 ATAGCCTCCAAAAATATGAAACCAT 57.081 32.000 0.00 0.00 0.00 3.55
47 48 6.625532 AGCCTCCAAAAATATGAAACCATT 57.374 33.333 0.00 0.00 0.00 3.16
48 49 7.019656 AGCCTCCAAAAATATGAAACCATTT 57.980 32.000 0.00 0.00 0.00 2.32
49 50 7.460910 AGCCTCCAAAAATATGAAACCATTTT 58.539 30.769 0.00 0.00 36.22 1.82
50 51 7.944000 AGCCTCCAAAAATATGAAACCATTTTT 59.056 29.630 0.00 0.00 42.28 1.94
56 57 8.688747 AAAAATATGAAACCATTTTTGGCAGA 57.311 26.923 4.67 0.00 40.83 4.26
57 58 7.910441 AAATATGAAACCATTTTTGGCAGAG 57.090 32.000 0.00 0.00 0.00 3.35
58 59 3.749665 TGAAACCATTTTTGGCAGAGG 57.250 42.857 0.00 0.00 0.00 3.69
59 60 2.368221 TGAAACCATTTTTGGCAGAGGG 59.632 45.455 0.00 0.00 0.00 4.30
60 61 2.101640 AACCATTTTTGGCAGAGGGT 57.898 45.000 0.00 0.00 0.00 4.34
61 62 2.101640 ACCATTTTTGGCAGAGGGTT 57.898 45.000 0.00 0.00 0.00 4.11
62 63 2.407562 ACCATTTTTGGCAGAGGGTTT 58.592 42.857 0.00 0.00 0.00 3.27
63 64 3.582164 ACCATTTTTGGCAGAGGGTTTA 58.418 40.909 0.00 0.00 0.00 2.01
64 65 3.578282 ACCATTTTTGGCAGAGGGTTTAG 59.422 43.478 0.00 0.00 0.00 1.85
65 66 3.588955 CATTTTTGGCAGAGGGTTTAGC 58.411 45.455 0.00 0.00 0.00 3.09
68 69 4.645809 GGCAGAGGGTTTAGCCAG 57.354 61.111 0.00 0.00 46.26 4.85
69 70 1.077429 GGCAGAGGGTTTAGCCAGG 60.077 63.158 0.00 0.00 46.26 4.45
70 71 1.562672 GGCAGAGGGTTTAGCCAGGA 61.563 60.000 0.00 0.00 46.26 3.86
71 72 0.393132 GCAGAGGGTTTAGCCAGGAC 60.393 60.000 0.26 0.00 39.65 3.85
72 73 0.253327 CAGAGGGTTTAGCCAGGACC 59.747 60.000 0.26 0.00 39.65 4.46
73 74 0.178873 AGAGGGTTTAGCCAGGACCA 60.179 55.000 0.26 0.00 39.65 4.02
74 75 0.696501 GAGGGTTTAGCCAGGACCAA 59.303 55.000 0.26 0.00 39.65 3.67
75 76 1.074889 GAGGGTTTAGCCAGGACCAAA 59.925 52.381 0.26 0.00 39.65 3.28
76 77 1.075536 AGGGTTTAGCCAGGACCAAAG 59.924 52.381 0.26 0.00 39.65 2.77
77 78 1.074889 GGGTTTAGCCAGGACCAAAGA 59.925 52.381 0.00 0.00 39.65 2.52
78 79 2.291605 GGGTTTAGCCAGGACCAAAGAT 60.292 50.000 0.00 0.00 39.65 2.40
79 80 2.755103 GGTTTAGCCAGGACCAAAGATG 59.245 50.000 0.00 0.00 37.17 2.90
80 81 4.436713 GGTTTAGCCAGGACCAAAGATGG 61.437 52.174 0.00 0.00 44.39 3.51
94 95 6.528537 CCAAAGATGGTGAACATTTATGGA 57.471 37.500 4.05 0.00 42.18 3.41
95 96 6.567050 CCAAAGATGGTGAACATTTATGGAG 58.433 40.000 4.05 0.00 42.18 3.86
96 97 6.406177 CCAAAGATGGTGAACATTTATGGAGG 60.406 42.308 4.05 0.00 42.18 4.30
97 98 4.796606 AGATGGTGAACATTTATGGAGGG 58.203 43.478 0.00 0.00 40.72 4.30
98 99 2.733956 TGGTGAACATTTATGGAGGGC 58.266 47.619 0.00 0.00 0.00 5.19
99 100 2.042297 TGGTGAACATTTATGGAGGGCA 59.958 45.455 0.00 0.00 0.00 5.36
100 101 3.299503 GGTGAACATTTATGGAGGGCAT 58.700 45.455 0.00 0.00 0.00 4.40
101 102 3.706086 GGTGAACATTTATGGAGGGCATT 59.294 43.478 0.00 0.00 0.00 3.56
102 103 4.162131 GGTGAACATTTATGGAGGGCATTT 59.838 41.667 0.00 0.00 0.00 2.32
103 104 5.351458 GTGAACATTTATGGAGGGCATTTC 58.649 41.667 0.00 0.00 0.00 2.17
104 105 5.022122 TGAACATTTATGGAGGGCATTTCA 58.978 37.500 0.00 0.00 0.00 2.69
105 106 5.127519 TGAACATTTATGGAGGGCATTTCAG 59.872 40.000 0.00 0.00 0.00 3.02
106 107 3.962718 ACATTTATGGAGGGCATTTCAGG 59.037 43.478 0.00 0.00 0.00 3.86
107 108 3.756082 TTTATGGAGGGCATTTCAGGT 57.244 42.857 0.00 0.00 0.00 4.00
108 109 3.756082 TTATGGAGGGCATTTCAGGTT 57.244 42.857 0.00 0.00 0.00 3.50
109 110 2.149973 ATGGAGGGCATTTCAGGTTC 57.850 50.000 0.00 0.00 0.00 3.62
110 111 0.776810 TGGAGGGCATTTCAGGTTCA 59.223 50.000 0.00 0.00 0.00 3.18
111 112 1.358787 TGGAGGGCATTTCAGGTTCAT 59.641 47.619 0.00 0.00 0.00 2.57
112 113 2.225343 TGGAGGGCATTTCAGGTTCATT 60.225 45.455 0.00 0.00 0.00 2.57
113 114 2.167075 GGAGGGCATTTCAGGTTCATTG 59.833 50.000 0.00 0.00 0.00 2.82
114 115 3.091545 GAGGGCATTTCAGGTTCATTGA 58.908 45.455 0.00 0.00 0.00 2.57
115 116 3.509442 AGGGCATTTCAGGTTCATTGAA 58.491 40.909 0.00 0.00 33.00 2.69
116 117 3.903090 AGGGCATTTCAGGTTCATTGAAA 59.097 39.130 0.00 3.25 45.49 2.69
117 118 4.347583 AGGGCATTTCAGGTTCATTGAAAA 59.652 37.500 0.00 0.00 44.83 2.29
118 119 4.692155 GGGCATTTCAGGTTCATTGAAAAG 59.308 41.667 0.00 2.34 44.83 2.27
119 120 4.692155 GGCATTTCAGGTTCATTGAAAAGG 59.308 41.667 0.00 0.00 44.83 3.11
120 121 5.511202 GGCATTTCAGGTTCATTGAAAAGGA 60.511 40.000 0.00 0.00 44.83 3.36
121 122 6.168389 GCATTTCAGGTTCATTGAAAAGGAT 58.832 36.000 0.00 0.00 44.83 3.24
122 123 6.652062 GCATTTCAGGTTCATTGAAAAGGATT 59.348 34.615 0.00 0.00 44.83 3.01
123 124 7.173735 GCATTTCAGGTTCATTGAAAAGGATTT 59.826 33.333 0.00 0.00 44.83 2.17
139 140 7.939784 AAAGGATTTTAGTAAGCCCTAGTTG 57.060 36.000 0.00 0.00 31.62 3.16
140 141 6.638021 AGGATTTTAGTAAGCCCTAGTTGT 57.362 37.500 0.00 0.00 0.00 3.32
141 142 6.415573 AGGATTTTAGTAAGCCCTAGTTGTG 58.584 40.000 0.00 0.00 0.00 3.33
142 143 6.012771 AGGATTTTAGTAAGCCCTAGTTGTGT 60.013 38.462 0.00 0.00 0.00 3.72
143 144 6.657966 GGATTTTAGTAAGCCCTAGTTGTGTT 59.342 38.462 0.00 0.00 0.00 3.32
144 145 7.148289 GGATTTTAGTAAGCCCTAGTTGTGTTC 60.148 40.741 0.00 0.00 0.00 3.18
145 146 3.314541 AGTAAGCCCTAGTTGTGTTCG 57.685 47.619 0.00 0.00 0.00 3.95
146 147 2.028385 AGTAAGCCCTAGTTGTGTTCGG 60.028 50.000 0.00 0.00 0.00 4.30
147 148 0.036306 AAGCCCTAGTTGTGTTCGGG 59.964 55.000 0.00 0.00 37.97 5.14
148 149 1.376812 GCCCTAGTTGTGTTCGGGG 60.377 63.158 0.00 0.00 35.41 5.73
149 150 1.298667 CCCTAGTTGTGTTCGGGGG 59.701 63.158 0.00 0.00 0.00 5.40
150 151 1.486145 CCCTAGTTGTGTTCGGGGGT 61.486 60.000 0.00 0.00 0.00 4.95
151 152 0.321298 CCTAGTTGTGTTCGGGGGTG 60.321 60.000 0.00 0.00 0.00 4.61
152 153 0.953960 CTAGTTGTGTTCGGGGGTGC 60.954 60.000 0.00 0.00 0.00 5.01
153 154 1.412453 TAGTTGTGTTCGGGGGTGCT 61.412 55.000 0.00 0.00 0.00 4.40
154 155 2.203280 TTGTGTTCGGGGGTGCTG 60.203 61.111 0.00 0.00 0.00 4.41
155 156 3.783362 TTGTGTTCGGGGGTGCTGG 62.783 63.158 0.00 0.00 0.00 4.85
161 162 4.614036 CGGGGGTGCTGGGGTTTT 62.614 66.667 0.00 0.00 0.00 2.43
162 163 2.603473 GGGGGTGCTGGGGTTTTC 60.603 66.667 0.00 0.00 0.00 2.29
163 164 2.526110 GGGGTGCTGGGGTTTTCT 59.474 61.111 0.00 0.00 0.00 2.52
164 165 1.908299 GGGGTGCTGGGGTTTTCTG 60.908 63.158 0.00 0.00 0.00 3.02
165 166 1.152546 GGGTGCTGGGGTTTTCTGT 60.153 57.895 0.00 0.00 0.00 3.41
166 167 1.179174 GGGTGCTGGGGTTTTCTGTC 61.179 60.000 0.00 0.00 0.00 3.51
167 168 0.467290 GGTGCTGGGGTTTTCTGTCA 60.467 55.000 0.00 0.00 0.00 3.58
168 169 1.620822 GTGCTGGGGTTTTCTGTCAT 58.379 50.000 0.00 0.00 0.00 3.06
169 170 1.541588 GTGCTGGGGTTTTCTGTCATC 59.458 52.381 0.00 0.00 0.00 2.92
170 171 1.177401 GCTGGGGTTTTCTGTCATCC 58.823 55.000 0.00 0.00 0.00 3.51
171 172 1.839424 CTGGGGTTTTCTGTCATCCC 58.161 55.000 0.00 0.00 37.59 3.85
174 175 2.532250 GGGTTTTCTGTCATCCCCAT 57.468 50.000 0.00 0.00 32.66 4.00
175 176 2.820178 GGGTTTTCTGTCATCCCCATT 58.180 47.619 0.00 0.00 32.66 3.16
176 177 3.173151 GGGTTTTCTGTCATCCCCATTT 58.827 45.455 0.00 0.00 32.66 2.32
177 178 3.195610 GGGTTTTCTGTCATCCCCATTTC 59.804 47.826 0.00 0.00 32.66 2.17
178 179 3.831911 GGTTTTCTGTCATCCCCATTTCA 59.168 43.478 0.00 0.00 0.00 2.69
179 180 4.283212 GGTTTTCTGTCATCCCCATTTCAA 59.717 41.667 0.00 0.00 0.00 2.69
180 181 5.473039 GTTTTCTGTCATCCCCATTTCAAG 58.527 41.667 0.00 0.00 0.00 3.02
181 182 4.387026 TTCTGTCATCCCCATTTCAAGT 57.613 40.909 0.00 0.00 0.00 3.16
182 183 4.387026 TCTGTCATCCCCATTTCAAGTT 57.613 40.909 0.00 0.00 0.00 2.66
183 184 4.739793 TCTGTCATCCCCATTTCAAGTTT 58.260 39.130 0.00 0.00 0.00 2.66
184 185 4.766891 TCTGTCATCCCCATTTCAAGTTTC 59.233 41.667 0.00 0.00 0.00 2.78
185 186 4.739793 TGTCATCCCCATTTCAAGTTTCT 58.260 39.130 0.00 0.00 0.00 2.52
186 187 4.523943 TGTCATCCCCATTTCAAGTTTCTG 59.476 41.667 0.00 0.00 0.00 3.02
187 188 4.524328 GTCATCCCCATTTCAAGTTTCTGT 59.476 41.667 0.00 0.00 0.00 3.41
188 189 4.523943 TCATCCCCATTTCAAGTTTCTGTG 59.476 41.667 0.00 0.00 0.00 3.66
189 190 4.177537 TCCCCATTTCAAGTTTCTGTGA 57.822 40.909 0.00 0.00 0.00 3.58
190 191 4.541705 TCCCCATTTCAAGTTTCTGTGAA 58.458 39.130 0.00 0.00 31.99 3.18
191 192 4.959210 TCCCCATTTCAAGTTTCTGTGAAA 59.041 37.500 1.68 1.68 45.20 2.69
192 193 5.423610 TCCCCATTTCAAGTTTCTGTGAAAA 59.576 36.000 3.22 0.00 44.52 2.29
193 194 5.754890 CCCCATTTCAAGTTTCTGTGAAAAG 59.245 40.000 3.22 0.00 44.52 2.27
194 195 6.340522 CCCATTTCAAGTTTCTGTGAAAAGT 58.659 36.000 3.22 0.00 44.52 2.66
195 196 7.417342 CCCCATTTCAAGTTTCTGTGAAAAGTA 60.417 37.037 3.22 0.00 44.52 2.24
196 197 7.649306 CCCATTTCAAGTTTCTGTGAAAAGTAG 59.351 37.037 3.22 0.00 44.52 2.57
197 198 8.405531 CCATTTCAAGTTTCTGTGAAAAGTAGA 58.594 33.333 3.22 0.00 44.52 2.59
198 199 9.226345 CATTTCAAGTTTCTGTGAAAAGTAGAC 57.774 33.333 3.22 0.00 44.52 2.59
199 200 7.915293 TTCAAGTTTCTGTGAAAAGTAGACA 57.085 32.000 0.00 0.00 30.93 3.41
200 201 8.506168 TTCAAGTTTCTGTGAAAAGTAGACAT 57.494 30.769 0.00 0.00 30.93 3.06
201 202 7.919690 TCAAGTTTCTGTGAAAAGTAGACATG 58.080 34.615 0.00 0.00 0.00 3.21
202 203 7.768582 TCAAGTTTCTGTGAAAAGTAGACATGA 59.231 33.333 0.00 0.00 0.00 3.07
203 204 8.562892 CAAGTTTCTGTGAAAAGTAGACATGAT 58.437 33.333 0.00 0.00 0.00 2.45
204 205 9.778741 AAGTTTCTGTGAAAAGTAGACATGATA 57.221 29.630 0.00 0.00 0.00 2.15
205 206 9.209175 AGTTTCTGTGAAAAGTAGACATGATAC 57.791 33.333 0.00 2.03 0.00 2.24
206 207 8.988934 GTTTCTGTGAAAAGTAGACATGATACA 58.011 33.333 0.00 0.00 0.00 2.29
207 208 9.554395 TTTCTGTGAAAAGTAGACATGATACAA 57.446 29.630 0.00 0.00 0.00 2.41
208 209 8.534333 TCTGTGAAAAGTAGACATGATACAAC 57.466 34.615 0.00 0.00 0.00 3.32
209 210 8.147704 TCTGTGAAAAGTAGACATGATACAACA 58.852 33.333 0.00 3.37 0.00 3.33
210 211 8.083462 TGTGAAAAGTAGACATGATACAACAC 57.917 34.615 0.00 10.69 0.00 3.32
211 212 7.931407 TGTGAAAAGTAGACATGATACAACACT 59.069 33.333 0.00 0.00 0.00 3.55
212 213 8.436200 GTGAAAAGTAGACATGATACAACACTC 58.564 37.037 0.00 0.00 0.00 3.51
213 214 8.367911 TGAAAAGTAGACATGATACAACACTCT 58.632 33.333 0.00 0.00 0.00 3.24
214 215 9.856488 GAAAAGTAGACATGATACAACACTCTA 57.144 33.333 0.00 0.00 0.00 2.43
217 218 9.809096 AAGTAGACATGATACAACACTCTAATG 57.191 33.333 0.00 0.00 0.00 1.90
218 219 7.923344 AGTAGACATGATACAACACTCTAATGC 59.077 37.037 0.00 0.00 0.00 3.56
219 220 6.643388 AGACATGATACAACACTCTAATGCA 58.357 36.000 0.00 0.00 0.00 3.96
220 221 7.278135 AGACATGATACAACACTCTAATGCAT 58.722 34.615 0.00 0.00 0.00 3.96
221 222 7.226128 AGACATGATACAACACTCTAATGCATG 59.774 37.037 0.00 0.00 36.43 4.06
222 223 7.049754 ACATGATACAACACTCTAATGCATGA 58.950 34.615 0.00 0.00 34.93 3.07
223 224 7.553760 ACATGATACAACACTCTAATGCATGAA 59.446 33.333 0.00 0.00 34.93 2.57
224 225 8.565416 CATGATACAACACTCTAATGCATGAAT 58.435 33.333 0.00 0.00 33.23 2.57
225 226 8.510243 TGATACAACACTCTAATGCATGAATT 57.490 30.769 3.88 3.88 0.00 2.17
226 227 9.612066 TGATACAACACTCTAATGCATGAATTA 57.388 29.630 0.00 5.98 0.00 1.40
228 229 6.789262 ACAACACTCTAATGCATGAATTAGC 58.211 36.000 23.87 0.00 39.16 3.09
229 230 6.600822 ACAACACTCTAATGCATGAATTAGCT 59.399 34.615 23.87 11.62 39.16 3.32
230 231 7.770433 ACAACACTCTAATGCATGAATTAGCTA 59.230 33.333 23.87 10.60 39.16 3.32
231 232 7.959689 ACACTCTAATGCATGAATTAGCTAG 57.040 36.000 23.87 19.52 39.16 3.42
232 233 6.933521 ACACTCTAATGCATGAATTAGCTAGG 59.066 38.462 23.87 16.24 39.16 3.02
233 234 7.157347 CACTCTAATGCATGAATTAGCTAGGA 58.843 38.462 23.87 9.58 39.16 2.94
234 235 7.823310 CACTCTAATGCATGAATTAGCTAGGAT 59.177 37.037 23.87 4.62 39.16 3.24
235 236 7.823310 ACTCTAATGCATGAATTAGCTAGGATG 59.177 37.037 23.87 12.04 39.16 3.51
236 237 7.683578 TCTAATGCATGAATTAGCTAGGATGT 58.316 34.615 23.87 0.00 39.16 3.06
237 238 6.570672 AATGCATGAATTAGCTAGGATGTG 57.429 37.500 0.00 0.00 0.00 3.21
238 239 5.294734 TGCATGAATTAGCTAGGATGTGA 57.705 39.130 0.00 0.00 0.00 3.58
239 240 5.059161 TGCATGAATTAGCTAGGATGTGAC 58.941 41.667 0.00 0.00 0.00 3.67
240 241 5.059161 GCATGAATTAGCTAGGATGTGACA 58.941 41.667 0.00 0.00 0.00 3.58
387 395 1.093159 CATCCTCTGTTGCTTCTGCC 58.907 55.000 0.00 0.00 38.71 4.85
431 439 1.190763 CAAGCGCAACAATTGACAAGC 59.809 47.619 13.59 11.87 0.00 4.01
432 440 0.661187 AGCGCAACAATTGACAAGCG 60.661 50.000 23.35 23.35 46.99 4.68
436 459 1.001378 GCAACAATTGACAAGCGAGGT 60.001 47.619 13.59 0.00 0.00 3.85
821 957 0.457853 CCTTCGATCCGACGAGCAAA 60.458 55.000 0.00 0.00 43.04 3.68
824 960 1.445410 CGATCCGACGAGCAAACCA 60.445 57.895 0.00 0.00 35.09 3.67
841 977 5.688807 CAAACCACCTCCTTGATAGATCAT 58.311 41.667 0.00 0.00 36.56 2.45
844 985 3.558746 CCACCTCCTTGATAGATCATGCC 60.559 52.174 0.00 0.00 36.56 4.40
941 1122 6.029607 GCATCGCAATTGTTCTATTTCTTGA 58.970 36.000 7.40 0.00 0.00 3.02
948 1129 5.560966 TTGTTCTATTTCTTGATTCGCCC 57.439 39.130 0.00 0.00 0.00 6.13
968 1149 2.146342 CGTGCAATCACTTGGTCTCTT 58.854 47.619 0.00 0.00 40.99 2.85
1021 1202 2.963854 CTAGCCATGTCGCTGCGG 60.964 66.667 23.03 6.54 40.08 5.69
1046 1227 4.715523 GCCGCTGTTGCCTACCCA 62.716 66.667 0.00 0.00 35.36 4.51
1431 1612 1.140052 TGGTTCGAGAAGAAGGCAACA 59.860 47.619 0.00 0.00 39.95 3.33
1483 1664 1.754745 GCATCCTTCGATGGCCCTA 59.245 57.895 12.42 0.00 45.25 3.53
1497 1678 1.235948 GCCCTACTCCGTCGATCGAT 61.236 60.000 22.50 7.28 42.86 3.59
1542 1723 0.247460 CGACTGAGATGGTGGCAGAA 59.753 55.000 0.00 0.00 33.94 3.02
1579 1763 2.867855 GCTGGTCCTGTGGTGTCGA 61.868 63.158 0.00 0.00 0.00 4.20
1706 1890 2.237143 TGGCTAAGATGAAGGTGGACTG 59.763 50.000 0.00 0.00 0.00 3.51
1707 1891 2.420687 GGCTAAGATGAAGGTGGACTGG 60.421 54.545 0.00 0.00 0.00 4.00
1708 1892 2.420687 GCTAAGATGAAGGTGGACTGGG 60.421 54.545 0.00 0.00 0.00 4.45
1709 1893 2.044793 AAGATGAAGGTGGACTGGGA 57.955 50.000 0.00 0.00 0.00 4.37
1710 1894 1.577736 AGATGAAGGTGGACTGGGAG 58.422 55.000 0.00 0.00 0.00 4.30
1711 1895 0.107459 GATGAAGGTGGACTGGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
1830 2020 1.610379 GCCCATGCCAACCTTCCTT 60.610 57.895 0.00 0.00 0.00 3.36
1995 2402 6.992715 AGCTAGGTGGACATGATTAATACAAC 59.007 38.462 0.00 0.00 0.00 3.32
2059 2475 4.437794 CGATGGAGTGAAATGATGGTGTTG 60.438 45.833 0.00 0.00 0.00 3.33
2060 2476 3.831323 TGGAGTGAAATGATGGTGTTGT 58.169 40.909 0.00 0.00 0.00 3.32
2061 2477 3.569277 TGGAGTGAAATGATGGTGTTGTG 59.431 43.478 0.00 0.00 0.00 3.33
2062 2478 3.568538 GAGTGAAATGATGGTGTTGTGC 58.431 45.455 0.00 0.00 0.00 4.57
2063 2479 3.225104 AGTGAAATGATGGTGTTGTGCT 58.775 40.909 0.00 0.00 0.00 4.40
2064 2480 3.638160 AGTGAAATGATGGTGTTGTGCTT 59.362 39.130 0.00 0.00 0.00 3.91
2226 2707 3.242492 ATGGCCAGGCACATTGGGT 62.242 57.895 15.19 0.00 36.19 4.51
2241 2747 1.334160 TGGGTGACTAGCTTTGACGA 58.666 50.000 0.00 0.00 0.00 4.20
2382 3015 3.616721 CCGGCGCCCTAGCATAGT 61.617 66.667 23.46 0.00 36.82 2.12
2569 3744 2.595463 CCGCCGGCCATCATCAAT 60.595 61.111 23.46 0.00 0.00 2.57
2572 3747 1.848932 CGCCGGCCATCATCAATCTG 61.849 60.000 23.46 0.00 0.00 2.90
2579 3754 2.684630 GCCATCATCAATCTGTGACCCA 60.685 50.000 0.00 0.00 39.72 4.51
2599 3774 1.374947 GGCAGTGCACCTCAACCTA 59.625 57.895 18.61 0.00 0.00 3.08
2657 3870 0.625316 ACAATAGCATGCCCACCAGA 59.375 50.000 15.66 0.00 0.00 3.86
2665 3906 2.985847 GCCCACCAGACACCAAGC 60.986 66.667 0.00 0.00 0.00 4.01
2758 4003 1.941668 GCTCCTGACGCTGCTTTTACT 60.942 52.381 0.00 0.00 0.00 2.24
2764 4009 1.871039 GACGCTGCTTTTACTCCAACA 59.129 47.619 0.00 0.00 0.00 3.33
2830 4075 9.950680 TTTGTCTTTCTAGTCATTTCAAATGAC 57.049 29.630 28.92 28.92 46.41 3.06
2841 4086 7.180079 GTCATTTCAAATGACTACCACATACG 58.820 38.462 28.85 0.00 43.62 3.06
2842 4087 6.315144 TCATTTCAAATGACTACCACATACGG 59.685 38.462 8.85 0.00 0.00 4.02
2843 4088 5.408880 TTCAAATGACTACCACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2844 4089 5.607939 TCAAATGACTACCACATACGGAT 57.392 39.130 0.00 0.00 0.00 4.18
2845 4090 5.356426 TCAAATGACTACCACATACGGATG 58.644 41.667 5.94 5.94 39.16 3.51
2847 4092 6.097129 TCAAATGACTACCACATACGGATGTA 59.903 38.462 14.23 0.00 44.82 2.29
2848 4093 6.665992 AATGACTACCACATACGGATGTAT 57.334 37.500 14.23 7.46 44.82 2.29
2887 4132 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2888 4133 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2889 4134 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2890 4135 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2891 4136 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2892 4137 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2893 4138 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2894 4139 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2895 4140 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2896 4141 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2897 4142 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2898 4143 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2899 4144 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2900 4145 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2901 4146 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2902 4147 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.818130 TTCTGGATTTTGCACCAAGC 57.182 45.000 0.00 0.00 45.96 4.01
4 5 4.427312 GCTATTCTGGATTTTGCACCAAG 58.573 43.478 0.00 0.00 35.67 3.61
5 6 3.195396 GGCTATTCTGGATTTTGCACCAA 59.805 43.478 0.00 0.00 35.67 3.67
6 7 2.760092 GGCTATTCTGGATTTTGCACCA 59.240 45.455 0.00 0.00 34.81 4.17
7 8 3.026694 AGGCTATTCTGGATTTTGCACC 58.973 45.455 0.00 0.00 0.00 5.01
8 9 3.067320 GGAGGCTATTCTGGATTTTGCAC 59.933 47.826 0.00 0.00 0.00 4.57
9 10 3.290710 GGAGGCTATTCTGGATTTTGCA 58.709 45.455 0.00 0.00 0.00 4.08
10 11 3.290710 TGGAGGCTATTCTGGATTTTGC 58.709 45.455 0.00 0.00 0.00 3.68
11 12 5.920193 TTTGGAGGCTATTCTGGATTTTG 57.080 39.130 0.00 0.00 0.00 2.44
12 13 6.933514 TTTTTGGAGGCTATTCTGGATTTT 57.066 33.333 0.00 0.00 0.00 1.82
13 14 8.645110 CATATTTTTGGAGGCTATTCTGGATTT 58.355 33.333 0.00 0.00 0.00 2.17
14 15 8.006564 TCATATTTTTGGAGGCTATTCTGGATT 58.993 33.333 0.00 0.00 0.00 3.01
15 16 7.529555 TCATATTTTTGGAGGCTATTCTGGAT 58.470 34.615 0.00 0.00 0.00 3.41
16 17 6.910191 TCATATTTTTGGAGGCTATTCTGGA 58.090 36.000 0.00 0.00 0.00 3.86
17 18 7.587037 TTCATATTTTTGGAGGCTATTCTGG 57.413 36.000 0.00 0.00 0.00 3.86
18 19 7.922811 GGTTTCATATTTTTGGAGGCTATTCTG 59.077 37.037 0.00 0.00 0.00 3.02
19 20 7.619302 TGGTTTCATATTTTTGGAGGCTATTCT 59.381 33.333 0.00 0.00 0.00 2.40
20 21 7.781056 TGGTTTCATATTTTTGGAGGCTATTC 58.219 34.615 0.00 0.00 0.00 1.75
21 22 7.732222 TGGTTTCATATTTTTGGAGGCTATT 57.268 32.000 0.00 0.00 0.00 1.73
22 23 7.919385 ATGGTTTCATATTTTTGGAGGCTAT 57.081 32.000 0.00 0.00 0.00 2.97
23 24 7.732222 AATGGTTTCATATTTTTGGAGGCTA 57.268 32.000 0.00 0.00 32.44 3.93
24 25 6.625532 AATGGTTTCATATTTTTGGAGGCT 57.374 33.333 0.00 0.00 32.44 4.58
25 26 7.686438 AAAATGGTTTCATATTTTTGGAGGC 57.314 32.000 0.00 0.00 33.91 4.70
31 32 8.688747 TCTGCCAAAAATGGTTTCATATTTTT 57.311 26.923 0.00 0.00 43.46 1.94
32 33 7.391275 CCTCTGCCAAAAATGGTTTCATATTTT 59.609 33.333 0.00 0.00 37.92 1.82
33 34 6.880529 CCTCTGCCAAAAATGGTTTCATATTT 59.119 34.615 0.00 0.00 32.44 1.40
34 35 6.408869 CCTCTGCCAAAAATGGTTTCATATT 58.591 36.000 0.00 0.00 32.44 1.28
35 36 5.104817 CCCTCTGCCAAAAATGGTTTCATAT 60.105 40.000 0.00 0.00 32.44 1.78
36 37 4.222588 CCCTCTGCCAAAAATGGTTTCATA 59.777 41.667 0.00 0.00 32.44 2.15
37 38 3.008266 CCCTCTGCCAAAAATGGTTTCAT 59.992 43.478 0.00 0.00 34.56 2.57
38 39 2.368221 CCCTCTGCCAAAAATGGTTTCA 59.632 45.455 0.00 0.00 0.00 2.69
39 40 2.368548 ACCCTCTGCCAAAAATGGTTTC 59.631 45.455 0.00 0.00 0.00 2.78
40 41 2.407562 ACCCTCTGCCAAAAATGGTTT 58.592 42.857 0.00 0.00 0.00 3.27
41 42 2.101640 ACCCTCTGCCAAAAATGGTT 57.898 45.000 0.00 0.00 0.00 3.67
42 43 2.101640 AACCCTCTGCCAAAAATGGT 57.898 45.000 0.00 0.00 0.00 3.55
43 44 3.617288 GCTAAACCCTCTGCCAAAAATGG 60.617 47.826 0.00 0.00 0.00 3.16
44 45 3.588955 GCTAAACCCTCTGCCAAAAATG 58.411 45.455 0.00 0.00 0.00 2.32
45 46 2.567169 GGCTAAACCCTCTGCCAAAAAT 59.433 45.455 0.00 0.00 44.34 1.82
46 47 1.967779 GGCTAAACCCTCTGCCAAAAA 59.032 47.619 0.00 0.00 44.34 1.94
47 48 1.627864 GGCTAAACCCTCTGCCAAAA 58.372 50.000 0.00 0.00 44.34 2.44
48 49 3.356814 GGCTAAACCCTCTGCCAAA 57.643 52.632 0.00 0.00 44.34 3.28
51 52 1.077429 CCTGGCTAAACCCTCTGCC 60.077 63.158 0.00 0.00 45.10 4.85
52 53 0.393132 GTCCTGGCTAAACCCTCTGC 60.393 60.000 0.00 0.00 37.83 4.26
53 54 0.253327 GGTCCTGGCTAAACCCTCTG 59.747 60.000 0.00 0.00 37.83 3.35
54 55 0.178873 TGGTCCTGGCTAAACCCTCT 60.179 55.000 0.29 0.00 37.83 3.69
55 56 0.696501 TTGGTCCTGGCTAAACCCTC 59.303 55.000 0.29 0.00 37.83 4.30
56 57 1.075536 CTTTGGTCCTGGCTAAACCCT 59.924 52.381 0.29 0.00 37.83 4.34
57 58 1.074889 TCTTTGGTCCTGGCTAAACCC 59.925 52.381 0.29 0.00 37.83 4.11
58 59 2.579410 TCTTTGGTCCTGGCTAAACC 57.421 50.000 0.00 0.00 39.84 3.27
59 60 2.755103 CCATCTTTGGTCCTGGCTAAAC 59.245 50.000 0.00 0.00 38.30 2.01
60 61 3.085952 CCATCTTTGGTCCTGGCTAAA 57.914 47.619 0.00 0.00 38.30 1.85
61 62 2.806945 CCATCTTTGGTCCTGGCTAA 57.193 50.000 0.00 0.00 38.30 3.09
72 73 6.406177 CCCTCCATAAATGTTCACCATCTTTG 60.406 42.308 0.00 0.00 31.75 2.77
73 74 5.658190 CCCTCCATAAATGTTCACCATCTTT 59.342 40.000 0.00 0.00 31.75 2.52
74 75 5.203528 CCCTCCATAAATGTTCACCATCTT 58.796 41.667 0.00 0.00 31.75 2.40
75 76 4.796606 CCCTCCATAAATGTTCACCATCT 58.203 43.478 0.00 0.00 31.75 2.90
76 77 3.319122 GCCCTCCATAAATGTTCACCATC 59.681 47.826 0.00 0.00 31.75 3.51
77 78 3.299503 GCCCTCCATAAATGTTCACCAT 58.700 45.455 0.00 0.00 34.36 3.55
78 79 2.042297 TGCCCTCCATAAATGTTCACCA 59.958 45.455 0.00 0.00 0.00 4.17
79 80 2.733956 TGCCCTCCATAAATGTTCACC 58.266 47.619 0.00 0.00 0.00 4.02
80 81 5.105392 TGAAATGCCCTCCATAAATGTTCAC 60.105 40.000 0.00 0.00 32.67 3.18
81 82 5.022122 TGAAATGCCCTCCATAAATGTTCA 58.978 37.500 0.00 0.00 32.67 3.18
82 83 5.452356 CCTGAAATGCCCTCCATAAATGTTC 60.452 44.000 0.00 0.00 32.67 3.18
83 84 4.406649 CCTGAAATGCCCTCCATAAATGTT 59.593 41.667 0.00 0.00 32.67 2.71
84 85 3.962718 CCTGAAATGCCCTCCATAAATGT 59.037 43.478 0.00 0.00 32.67 2.71
85 86 3.962718 ACCTGAAATGCCCTCCATAAATG 59.037 43.478 0.00 0.00 32.67 2.32
86 87 4.270317 ACCTGAAATGCCCTCCATAAAT 57.730 40.909 0.00 0.00 32.67 1.40
87 88 3.756082 ACCTGAAATGCCCTCCATAAA 57.244 42.857 0.00 0.00 32.67 1.40
88 89 3.011144 TGAACCTGAAATGCCCTCCATAA 59.989 43.478 0.00 0.00 32.67 1.90
89 90 2.580322 TGAACCTGAAATGCCCTCCATA 59.420 45.455 0.00 0.00 32.67 2.74
90 91 1.358787 TGAACCTGAAATGCCCTCCAT 59.641 47.619 0.00 0.00 35.06 3.41
91 92 0.776810 TGAACCTGAAATGCCCTCCA 59.223 50.000 0.00 0.00 0.00 3.86
92 93 2.149973 ATGAACCTGAAATGCCCTCC 57.850 50.000 0.00 0.00 0.00 4.30
93 94 3.091545 TCAATGAACCTGAAATGCCCTC 58.908 45.455 0.00 0.00 0.00 4.30
94 95 3.173953 TCAATGAACCTGAAATGCCCT 57.826 42.857 0.00 0.00 0.00 5.19
95 96 3.959535 TTCAATGAACCTGAAATGCCC 57.040 42.857 0.00 0.00 29.93 5.36
96 97 4.692155 CCTTTTCAATGAACCTGAAATGCC 59.308 41.667 0.00 0.00 41.23 4.40
97 98 5.540911 TCCTTTTCAATGAACCTGAAATGC 58.459 37.500 0.00 0.00 41.23 3.56
98 99 8.611654 AAATCCTTTTCAATGAACCTGAAATG 57.388 30.769 0.00 2.48 41.23 2.32
100 101 9.762933 CTAAAATCCTTTTCAATGAACCTGAAA 57.237 29.630 0.00 0.00 40.21 2.69
101 102 8.923270 ACTAAAATCCTTTTCAATGAACCTGAA 58.077 29.630 0.00 0.00 34.19 3.02
102 103 8.477419 ACTAAAATCCTTTTCAATGAACCTGA 57.523 30.769 0.00 0.00 34.19 3.86
105 106 9.140286 GCTTACTAAAATCCTTTTCAATGAACC 57.860 33.333 0.00 0.00 34.19 3.62
106 107 9.140286 GGCTTACTAAAATCCTTTTCAATGAAC 57.860 33.333 0.00 0.00 34.19 3.18
107 108 8.311109 GGGCTTACTAAAATCCTTTTCAATGAA 58.689 33.333 0.00 0.00 34.19 2.57
108 109 7.673926 AGGGCTTACTAAAATCCTTTTCAATGA 59.326 33.333 0.00 0.00 34.19 2.57
109 110 7.840931 AGGGCTTACTAAAATCCTTTTCAATG 58.159 34.615 0.00 0.00 34.19 2.82
110 111 9.190317 CTAGGGCTTACTAAAATCCTTTTCAAT 57.810 33.333 0.00 0.00 34.19 2.57
111 112 8.168058 ACTAGGGCTTACTAAAATCCTTTTCAA 58.832 33.333 0.00 0.00 34.19 2.69
112 113 7.696017 ACTAGGGCTTACTAAAATCCTTTTCA 58.304 34.615 0.00 0.00 34.19 2.69
113 114 8.459635 CAACTAGGGCTTACTAAAATCCTTTTC 58.540 37.037 0.00 0.00 34.19 2.29
114 115 7.948447 ACAACTAGGGCTTACTAAAATCCTTTT 59.052 33.333 0.00 0.00 36.67 2.27
115 116 7.393515 CACAACTAGGGCTTACTAAAATCCTTT 59.606 37.037 0.00 0.00 0.00 3.11
116 117 6.884836 CACAACTAGGGCTTACTAAAATCCTT 59.115 38.462 0.00 0.00 0.00 3.36
117 118 6.012771 ACACAACTAGGGCTTACTAAAATCCT 60.013 38.462 0.00 0.00 0.00 3.24
118 119 6.178324 ACACAACTAGGGCTTACTAAAATCC 58.822 40.000 0.00 0.00 0.00 3.01
119 120 7.412672 CGAACACAACTAGGGCTTACTAAAATC 60.413 40.741 0.00 0.00 0.00 2.17
120 121 6.370718 CGAACACAACTAGGGCTTACTAAAAT 59.629 38.462 0.00 0.00 0.00 1.82
121 122 5.697633 CGAACACAACTAGGGCTTACTAAAA 59.302 40.000 0.00 0.00 0.00 1.52
122 123 5.232463 CGAACACAACTAGGGCTTACTAAA 58.768 41.667 0.00 0.00 0.00 1.85
123 124 4.322198 CCGAACACAACTAGGGCTTACTAA 60.322 45.833 0.00 0.00 0.00 2.24
124 125 3.194116 CCGAACACAACTAGGGCTTACTA 59.806 47.826 0.00 0.00 0.00 1.82
125 126 2.028385 CCGAACACAACTAGGGCTTACT 60.028 50.000 0.00 0.00 0.00 2.24
126 127 2.344025 CCGAACACAACTAGGGCTTAC 58.656 52.381 0.00 0.00 0.00 2.34
127 128 1.276989 CCCGAACACAACTAGGGCTTA 59.723 52.381 0.00 0.00 35.09 3.09
128 129 0.036306 CCCGAACACAACTAGGGCTT 59.964 55.000 0.00 0.00 35.09 4.35
129 130 1.677552 CCCGAACACAACTAGGGCT 59.322 57.895 0.00 0.00 35.09 5.19
130 131 1.376812 CCCCGAACACAACTAGGGC 60.377 63.158 0.00 0.00 40.71 5.19
131 132 1.298667 CCCCCGAACACAACTAGGG 59.701 63.158 0.00 0.00 41.68 3.53
132 133 0.321298 CACCCCCGAACACAACTAGG 60.321 60.000 0.00 0.00 0.00 3.02
133 134 0.953960 GCACCCCCGAACACAACTAG 60.954 60.000 0.00 0.00 0.00 2.57
134 135 1.071814 GCACCCCCGAACACAACTA 59.928 57.895 0.00 0.00 0.00 2.24
135 136 2.203294 GCACCCCCGAACACAACT 60.203 61.111 0.00 0.00 0.00 3.16
136 137 2.203294 AGCACCCCCGAACACAAC 60.203 61.111 0.00 0.00 0.00 3.32
137 138 2.203280 CAGCACCCCCGAACACAA 60.203 61.111 0.00 0.00 0.00 3.33
138 139 4.263572 CCAGCACCCCCGAACACA 62.264 66.667 0.00 0.00 0.00 3.72
144 145 4.614036 AAAACCCCAGCACCCCCG 62.614 66.667 0.00 0.00 0.00 5.73
145 146 2.603473 GAAAACCCCAGCACCCCC 60.603 66.667 0.00 0.00 0.00 5.40
146 147 1.908299 CAGAAAACCCCAGCACCCC 60.908 63.158 0.00 0.00 0.00 4.95
147 148 1.152546 ACAGAAAACCCCAGCACCC 60.153 57.895 0.00 0.00 0.00 4.61
148 149 0.467290 TGACAGAAAACCCCAGCACC 60.467 55.000 0.00 0.00 0.00 5.01
149 150 1.541588 GATGACAGAAAACCCCAGCAC 59.458 52.381 0.00 0.00 0.00 4.40
150 151 1.547675 GGATGACAGAAAACCCCAGCA 60.548 52.381 0.00 0.00 0.00 4.41
151 152 1.177401 GGATGACAGAAAACCCCAGC 58.823 55.000 0.00 0.00 0.00 4.85
152 153 1.839424 GGGATGACAGAAAACCCCAG 58.161 55.000 0.00 0.00 35.00 4.45
155 156 2.532250 ATGGGGATGACAGAAAACCC 57.468 50.000 0.00 0.00 39.79 4.11
156 157 3.831911 TGAAATGGGGATGACAGAAAACC 59.168 43.478 0.00 0.00 0.00 3.27
157 158 5.011023 ACTTGAAATGGGGATGACAGAAAAC 59.989 40.000 0.00 0.00 0.00 2.43
158 159 5.147032 ACTTGAAATGGGGATGACAGAAAA 58.853 37.500 0.00 0.00 0.00 2.29
159 160 4.739793 ACTTGAAATGGGGATGACAGAAA 58.260 39.130 0.00 0.00 0.00 2.52
160 161 4.387026 ACTTGAAATGGGGATGACAGAA 57.613 40.909 0.00 0.00 0.00 3.02
161 162 4.387026 AACTTGAAATGGGGATGACAGA 57.613 40.909 0.00 0.00 0.00 3.41
162 163 4.768968 AGAAACTTGAAATGGGGATGACAG 59.231 41.667 0.00 0.00 0.00 3.51
163 164 4.523943 CAGAAACTTGAAATGGGGATGACA 59.476 41.667 0.00 0.00 0.00 3.58
164 165 4.524328 ACAGAAACTTGAAATGGGGATGAC 59.476 41.667 0.00 0.00 0.00 3.06
165 166 4.523943 CACAGAAACTTGAAATGGGGATGA 59.476 41.667 0.00 0.00 0.00 2.92
166 167 4.523943 TCACAGAAACTTGAAATGGGGATG 59.476 41.667 0.00 0.00 0.00 3.51
167 168 4.739793 TCACAGAAACTTGAAATGGGGAT 58.260 39.130 0.00 0.00 0.00 3.85
168 169 4.177537 TCACAGAAACTTGAAATGGGGA 57.822 40.909 0.00 0.00 0.00 4.81
169 170 4.935352 TTCACAGAAACTTGAAATGGGG 57.065 40.909 0.00 0.00 0.00 4.96
170 171 6.340522 ACTTTTCACAGAAACTTGAAATGGG 58.659 36.000 12.06 4.10 40.51 4.00
171 172 8.405531 TCTACTTTTCACAGAAACTTGAAATGG 58.594 33.333 12.06 5.85 40.51 3.16
172 173 9.226345 GTCTACTTTTCACAGAAACTTGAAATG 57.774 33.333 7.87 7.87 40.51 2.32
173 174 8.956426 TGTCTACTTTTCACAGAAACTTGAAAT 58.044 29.630 0.00 0.00 40.51 2.17
174 175 8.330466 TGTCTACTTTTCACAGAAACTTGAAA 57.670 30.769 0.00 0.00 39.42 2.69
175 176 7.915293 TGTCTACTTTTCACAGAAACTTGAA 57.085 32.000 0.00 0.00 0.00 2.69
176 177 7.768582 TCATGTCTACTTTTCACAGAAACTTGA 59.231 33.333 0.00 0.00 0.00 3.02
177 178 7.919690 TCATGTCTACTTTTCACAGAAACTTG 58.080 34.615 0.00 0.00 0.00 3.16
178 179 8.682936 ATCATGTCTACTTTTCACAGAAACTT 57.317 30.769 0.00 0.00 0.00 2.66
179 180 9.209175 GTATCATGTCTACTTTTCACAGAAACT 57.791 33.333 0.00 0.00 0.00 2.66
180 181 8.988934 TGTATCATGTCTACTTTTCACAGAAAC 58.011 33.333 0.00 0.00 0.00 2.78
181 182 9.554395 TTGTATCATGTCTACTTTTCACAGAAA 57.446 29.630 0.00 0.00 0.00 2.52
182 183 8.988934 GTTGTATCATGTCTACTTTTCACAGAA 58.011 33.333 0.00 0.00 0.00 3.02
183 184 8.147704 TGTTGTATCATGTCTACTTTTCACAGA 58.852 33.333 0.00 0.00 0.00 3.41
184 185 8.223769 GTGTTGTATCATGTCTACTTTTCACAG 58.776 37.037 0.00 0.00 0.00 3.66
185 186 7.931407 AGTGTTGTATCATGTCTACTTTTCACA 59.069 33.333 0.00 0.00 0.00 3.58
186 187 8.311650 AGTGTTGTATCATGTCTACTTTTCAC 57.688 34.615 0.00 5.50 0.00 3.18
187 188 8.367911 AGAGTGTTGTATCATGTCTACTTTTCA 58.632 33.333 0.00 0.00 0.00 2.69
188 189 8.764524 AGAGTGTTGTATCATGTCTACTTTTC 57.235 34.615 0.00 0.00 0.00 2.29
191 192 9.809096 CATTAGAGTGTTGTATCATGTCTACTT 57.191 33.333 0.00 0.00 0.00 2.24
192 193 7.923344 GCATTAGAGTGTTGTATCATGTCTACT 59.077 37.037 0.00 0.00 0.00 2.57
193 194 7.706607 TGCATTAGAGTGTTGTATCATGTCTAC 59.293 37.037 0.00 0.00 0.00 2.59
194 195 7.781056 TGCATTAGAGTGTTGTATCATGTCTA 58.219 34.615 0.00 0.00 0.00 2.59
195 196 6.643388 TGCATTAGAGTGTTGTATCATGTCT 58.357 36.000 0.00 0.00 0.00 3.41
196 197 6.908870 TGCATTAGAGTGTTGTATCATGTC 57.091 37.500 0.00 0.00 0.00 3.06
197 198 7.049754 TCATGCATTAGAGTGTTGTATCATGT 58.950 34.615 0.00 0.00 32.09 3.21
198 199 7.486802 TCATGCATTAGAGTGTTGTATCATG 57.513 36.000 0.00 0.00 0.00 3.07
199 200 8.687292 ATTCATGCATTAGAGTGTTGTATCAT 57.313 30.769 0.00 0.00 0.00 2.45
200 201 8.510243 AATTCATGCATTAGAGTGTTGTATCA 57.490 30.769 0.00 0.00 0.00 2.15
202 203 8.562892 GCTAATTCATGCATTAGAGTGTTGTAT 58.437 33.333 23.90 0.00 38.54 2.29
203 204 7.770433 AGCTAATTCATGCATTAGAGTGTTGTA 59.230 33.333 23.90 0.00 38.54 2.41
204 205 6.600822 AGCTAATTCATGCATTAGAGTGTTGT 59.399 34.615 23.90 1.80 38.54 3.32
205 206 7.024340 AGCTAATTCATGCATTAGAGTGTTG 57.976 36.000 23.90 2.52 38.54 3.33
206 207 7.443575 CCTAGCTAATTCATGCATTAGAGTGTT 59.556 37.037 23.90 9.29 38.54 3.32
207 208 6.933521 CCTAGCTAATTCATGCATTAGAGTGT 59.066 38.462 23.90 10.49 38.54 3.55
208 209 7.157347 TCCTAGCTAATTCATGCATTAGAGTG 58.843 38.462 23.90 13.67 38.54 3.51
209 210 7.308450 TCCTAGCTAATTCATGCATTAGAGT 57.692 36.000 23.90 14.37 38.54 3.24
210 211 7.823310 ACATCCTAGCTAATTCATGCATTAGAG 59.177 37.037 23.90 14.82 38.54 2.43
211 212 7.605309 CACATCCTAGCTAATTCATGCATTAGA 59.395 37.037 23.90 7.61 38.54 2.10
212 213 7.605309 TCACATCCTAGCTAATTCATGCATTAG 59.395 37.037 17.66 17.66 39.06 1.73
213 214 7.388776 GTCACATCCTAGCTAATTCATGCATTA 59.611 37.037 0.00 0.00 0.00 1.90
214 215 6.206243 GTCACATCCTAGCTAATTCATGCATT 59.794 38.462 0.00 0.00 0.00 3.56
215 216 5.704515 GTCACATCCTAGCTAATTCATGCAT 59.295 40.000 0.00 0.00 0.00 3.96
216 217 5.059161 GTCACATCCTAGCTAATTCATGCA 58.941 41.667 0.00 0.00 0.00 3.96
217 218 5.059161 TGTCACATCCTAGCTAATTCATGC 58.941 41.667 0.00 0.00 0.00 4.06
218 219 7.094890 GGATTGTCACATCCTAGCTAATTCATG 60.095 40.741 0.00 0.00 34.22 3.07
219 220 6.939163 GGATTGTCACATCCTAGCTAATTCAT 59.061 38.462 0.00 0.00 34.22 2.57
220 221 6.291377 GGATTGTCACATCCTAGCTAATTCA 58.709 40.000 0.00 0.00 34.22 2.57
221 222 5.406780 CGGATTGTCACATCCTAGCTAATTC 59.593 44.000 0.00 0.00 34.86 2.17
222 223 5.300752 CGGATTGTCACATCCTAGCTAATT 58.699 41.667 0.00 0.00 34.86 1.40
223 224 4.800914 GCGGATTGTCACATCCTAGCTAAT 60.801 45.833 0.00 0.00 34.86 1.73
224 225 3.492656 GCGGATTGTCACATCCTAGCTAA 60.493 47.826 0.00 0.00 34.86 3.09
225 226 2.035961 GCGGATTGTCACATCCTAGCTA 59.964 50.000 0.00 0.00 34.86 3.32
226 227 1.202580 GCGGATTGTCACATCCTAGCT 60.203 52.381 0.00 0.00 34.86 3.32
227 228 1.221414 GCGGATTGTCACATCCTAGC 58.779 55.000 10.45 5.78 34.86 3.42
228 229 1.541233 GGGCGGATTGTCACATCCTAG 60.541 57.143 10.45 0.00 34.86 3.02
229 230 0.468226 GGGCGGATTGTCACATCCTA 59.532 55.000 10.45 0.00 34.86 2.94
230 231 1.224592 GGGCGGATTGTCACATCCT 59.775 57.895 10.45 0.00 34.86 3.24
231 232 0.394352 AAGGGCGGATTGTCACATCC 60.394 55.000 4.72 4.72 0.00 3.51
232 233 1.017387 GAAGGGCGGATTGTCACATC 58.983 55.000 0.00 0.00 0.00 3.06
233 234 0.744414 CGAAGGGCGGATTGTCACAT 60.744 55.000 0.00 0.00 36.03 3.21
234 235 1.375396 CGAAGGGCGGATTGTCACA 60.375 57.895 0.00 0.00 36.03 3.58
235 236 2.750888 GCGAAGGGCGGATTGTCAC 61.751 63.158 0.00 0.00 41.29 3.67
236 237 2.435938 GCGAAGGGCGGATTGTCA 60.436 61.111 0.00 0.00 41.29 3.58
456 507 3.130160 GCTTTCCTCCTGCGCTGG 61.130 66.667 26.06 26.06 0.00 4.85
637 743 4.038162 CGTATCCGATCTTTCCTCCTCTTT 59.962 45.833 0.00 0.00 35.63 2.52
759 895 3.019799 ACCCGGCTGATATAGATCGAT 57.980 47.619 0.00 0.00 34.49 3.59
821 957 3.072184 GCATGATCTATCAAGGAGGTGGT 59.928 47.826 0.00 0.00 40.69 4.16
824 960 2.641815 GGGCATGATCTATCAAGGAGGT 59.358 50.000 0.00 0.00 40.69 3.85
841 977 3.691342 CCAGGAGAACGTCGGGCA 61.691 66.667 0.00 0.00 0.00 5.36
844 985 3.744719 TCGCCAGGAGAACGTCGG 61.745 66.667 0.00 0.00 0.00 4.79
941 1122 3.187058 GTGATTGCACGGGCGAAT 58.813 55.556 2.24 5.22 45.35 3.34
968 1149 2.423185 CACAGGACACAGCAAAGAACAA 59.577 45.455 0.00 0.00 0.00 2.83
1146 1327 3.550639 CGATCTTGTCTCTGATCCAGCTC 60.551 52.174 0.00 0.00 36.62 4.09
1411 1592 1.140052 TGTTGCCTTCTTCTCGAACCA 59.860 47.619 0.00 0.00 0.00 3.67
1431 1612 1.415659 GCCACCATCTCAGTCATAGCT 59.584 52.381 0.00 0.00 0.00 3.32
1497 1678 0.891373 CTGCCTTCTTCTCCGACAGA 59.109 55.000 0.00 0.00 0.00 3.41
1542 1723 1.810532 GAAGAGTGTCGCCTCCGAT 59.189 57.895 0.00 0.00 46.38 4.18
1780 1970 2.480555 CGGCGACACAATGAAGGC 59.519 61.111 0.00 0.00 0.00 4.35
1830 2020 5.414454 CACTTTAGCCACCTTGTGCTTATAA 59.586 40.000 0.00 0.00 31.34 0.98
1861 2051 0.315568 AGCATCGGAGCGACTAATCC 59.684 55.000 0.00 0.00 39.18 3.01
1954 2262 6.398918 CACCTAGCTACATACTGAAAACAGT 58.601 40.000 7.94 7.94 39.08 3.55
1995 2402 7.063544 GCCAAGCTCGATAATACTAAATGGTAG 59.936 40.741 0.00 0.00 0.00 3.18
2209 2690 3.913445 ACCCAATGTGCCTGGCCA 61.913 61.111 17.53 14.01 32.10 5.36
2226 2707 3.089284 TCATCCTCGTCAAAGCTAGTCA 58.911 45.455 0.00 0.00 0.00 3.41
2227 2708 3.701241 CTCATCCTCGTCAAAGCTAGTC 58.299 50.000 0.00 0.00 0.00 2.59
2228 2709 2.159170 GCTCATCCTCGTCAAAGCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
2230 2711 2.099921 GAGCTCATCCTCGTCAAAGCTA 59.900 50.000 9.40 0.00 40.01 3.32
2283 2874 3.163110 AACGCGGCACAAGAACGTG 62.163 57.895 12.47 0.00 43.09 4.49
2284 2875 2.893404 AACGCGGCACAAGAACGT 60.893 55.556 12.47 0.00 38.88 3.99
2288 2879 2.664851 CTCCAACGCGGCACAAGA 60.665 61.111 12.47 0.00 33.14 3.02
2375 3008 1.000283 GGCGACTGATGCTACTATGCT 60.000 52.381 0.00 0.00 0.00 3.79
2376 3009 1.423395 GGCGACTGATGCTACTATGC 58.577 55.000 0.00 0.00 0.00 3.14
2377 3010 1.691127 CGGCGACTGATGCTACTATG 58.309 55.000 0.00 0.00 0.00 2.23
2378 3011 0.039074 GCGGCGACTGATGCTACTAT 60.039 55.000 12.98 0.00 0.00 2.12
2379 3012 1.359117 GCGGCGACTGATGCTACTA 59.641 57.895 12.98 0.00 0.00 1.82
2380 3013 2.105128 GCGGCGACTGATGCTACT 59.895 61.111 12.98 0.00 0.00 2.57
2381 3014 2.202743 TGCGGCGACTGATGCTAC 60.203 61.111 12.98 0.00 0.00 3.58
2382 3015 2.104928 CTGCGGCGACTGATGCTA 59.895 61.111 12.98 0.00 0.00 3.49
2569 3744 1.376086 CACTGCCATGGGTCACAGA 59.624 57.895 20.15 0.00 34.25 3.41
2572 3747 2.282391 TGCACTGCCATGGGTCAC 60.282 61.111 15.13 0.00 0.00 3.67
2579 3754 1.604593 GGTTGAGGTGCACTGCCAT 60.605 57.895 17.98 0.00 0.00 4.40
2626 3826 4.697514 CATGCTATTGTAGTACCAGCAGT 58.302 43.478 19.73 10.26 44.73 4.40
2657 3870 2.363306 TGATTCAACAGGCTTGGTGT 57.637 45.000 14.16 0.00 42.78 4.16
2665 3906 4.999311 TGTGAGAGACATTGATTCAACAGG 59.001 41.667 0.15 0.00 0.00 4.00
2804 4049 9.950680 GTCATTTGAAATGACTAGAAAGACAAA 57.049 29.630 32.61 5.24 43.62 2.83
2816 4061 7.180079 CGTATGTGGTAGTCATTTGAAATGAC 58.820 38.462 32.79 32.79 46.41 3.06
2817 4062 6.315144 CCGTATGTGGTAGTCATTTGAAATGA 59.685 38.462 16.04 16.04 0.00 2.57
2818 4063 6.315144 TCCGTATGTGGTAGTCATTTGAAATG 59.685 38.462 11.54 11.54 0.00 2.32
2819 4064 6.411376 TCCGTATGTGGTAGTCATTTGAAAT 58.589 36.000 0.00 0.00 0.00 2.17
2820 4065 5.795972 TCCGTATGTGGTAGTCATTTGAAA 58.204 37.500 0.00 0.00 0.00 2.69
2821 4066 5.408880 TCCGTATGTGGTAGTCATTTGAA 57.591 39.130 0.00 0.00 0.00 2.69
2822 4067 5.105106 ACATCCGTATGTGGTAGTCATTTGA 60.105 40.000 0.00 0.00 44.79 2.69
2823 4068 5.116180 ACATCCGTATGTGGTAGTCATTTG 58.884 41.667 0.00 0.00 44.79 2.32
2824 4069 5.353394 ACATCCGTATGTGGTAGTCATTT 57.647 39.130 0.00 0.00 44.79 2.32
2825 4070 6.455647 CATACATCCGTATGTGGTAGTCATT 58.544 40.000 3.56 0.00 46.70 2.57
2826 4071 6.025749 CATACATCCGTATGTGGTAGTCAT 57.974 41.667 3.56 0.00 46.70 3.06
2827 4072 5.447624 CATACATCCGTATGTGGTAGTCA 57.552 43.478 3.56 0.00 46.70 3.41
2865 4110 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2866 4111 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2867 4112 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2868 4113 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2869 4114 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2870 4115 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2871 4116 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2872 4117 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2873 4118 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2874 4119 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2875 4120 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2876 4121 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2877 4122 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2878 4123 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2879 4124 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2880 4125 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2881 4126 4.530710 AAGTGACTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.