Multiple sequence alignment - TraesCS6D01G116900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G116900 chr6D 100.000 4088 0 0 1 4088 83058916 83054829 0.000000e+00 7550.0
1 TraesCS6D01G116900 chr6D 86.639 2193 268 17 933 3110 83540550 83542732 0.000000e+00 2403.0
2 TraesCS6D01G116900 chr6D 86.091 2200 281 19 933 3116 83124782 83122592 0.000000e+00 2344.0
3 TraesCS6D01G116900 chr6B 93.834 3211 177 16 355 3558 158104512 158101316 0.000000e+00 4813.0
4 TraesCS6D01G116900 chr6B 86.284 2180 276 13 933 3098 159402018 159404188 0.000000e+00 2348.0
5 TraesCS6D01G116900 chr6B 86.059 2195 279 20 933 3111 158149851 158147668 0.000000e+00 2333.0
6 TraesCS6D01G116900 chr6B 82.725 2275 356 32 995 3246 159395983 159398243 0.000000e+00 1989.0
7 TraesCS6D01G116900 chr6B 82.828 2143 347 19 995 3121 159377996 159380133 0.000000e+00 1899.0
8 TraesCS6D01G116900 chr6B 87.766 188 22 1 3766 3953 158096959 158096773 6.880000e-53 219.0
9 TraesCS6D01G116900 chr6B 91.613 155 4 5 3938 4088 158094996 158094847 5.360000e-49 206.0
10 TraesCS6D01G116900 chr6B 81.000 200 26 8 927 1126 158150609 158150422 9.160000e-32 148.0
11 TraesCS6D01G116900 chr6B 81.429 140 20 6 1 137 229671835 229671971 4.320000e-20 110.0
12 TraesCS6D01G116900 chr6A 92.121 3084 165 26 501 3558 100088338 100085307 0.000000e+00 4277.0
13 TraesCS6D01G116900 chr6A 86.183 2193 278 16 933 3110 100760924 100763106 0.000000e+00 2348.0
14 TraesCS6D01G116900 chr6A 85.688 2201 289 17 933 3116 100185140 100182949 0.000000e+00 2296.0
15 TraesCS6D01G116900 chr6A 85.577 2191 282 22 933 3108 100802994 100805165 0.000000e+00 2265.0
16 TraesCS6D01G116900 chr6A 86.279 481 54 5 2642 3110 100809263 100809743 2.820000e-141 512.0
17 TraesCS6D01G116900 chr6A 83.526 346 28 12 1 319 100094588 100094245 3.090000e-76 296.0
18 TraesCS6D01G116900 chr6A 89.764 127 12 1 328 454 100088478 100088353 1.180000e-35 161.0
19 TraesCS6D01G116900 chr5B 80.899 178 21 10 3113 3279 22096580 22096755 1.190000e-25 128.0
20 TraesCS6D01G116900 chr4A 79.775 178 23 10 3113 3279 624286333 624286158 2.580000e-22 117.0
21 TraesCS6D01G116900 chr4D 94.737 38 1 1 79 116 507667542 507667506 1.590000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G116900 chr6D 83054829 83058916 4087 True 7550.0 7550 100.0000 1 4088 1 chr6D.!!$R1 4087
1 TraesCS6D01G116900 chr6D 83540550 83542732 2182 False 2403.0 2403 86.6390 933 3110 1 chr6D.!!$F1 2177
2 TraesCS6D01G116900 chr6D 83122592 83124782 2190 True 2344.0 2344 86.0910 933 3116 1 chr6D.!!$R2 2183
3 TraesCS6D01G116900 chr6B 158101316 158104512 3196 True 4813.0 4813 93.8340 355 3558 1 chr6B.!!$R1 3203
4 TraesCS6D01G116900 chr6B 159395983 159404188 8205 False 2168.5 2348 84.5045 933 3246 2 chr6B.!!$F3 2313
5 TraesCS6D01G116900 chr6B 159377996 159380133 2137 False 1899.0 1899 82.8280 995 3121 1 chr6B.!!$F1 2126
6 TraesCS6D01G116900 chr6B 158147668 158150609 2941 True 1240.5 2333 83.5295 927 3111 2 chr6B.!!$R3 2184
7 TraesCS6D01G116900 chr6B 158094847 158096959 2112 True 212.5 219 89.6895 3766 4088 2 chr6B.!!$R2 322
8 TraesCS6D01G116900 chr6A 100760924 100763106 2182 False 2348.0 2348 86.1830 933 3110 1 chr6A.!!$F1 2177
9 TraesCS6D01G116900 chr6A 100182949 100185140 2191 True 2296.0 2296 85.6880 933 3116 1 chr6A.!!$R2 2183
10 TraesCS6D01G116900 chr6A 100802994 100805165 2171 False 2265.0 2265 85.5770 933 3108 1 chr6A.!!$F2 2175
11 TraesCS6D01G116900 chr6A 100085307 100088478 3171 True 2219.0 4277 90.9425 328 3558 2 chr6A.!!$R3 3230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 847 0.112412 AAGTTCCCTTTGCCCACGAT 59.888 50.0 0.0 0.0 0.00 3.73 F
979 6089 0.181114 TGCTCTCCACACAGCAGTTT 59.819 50.0 0.0 0.0 40.80 2.66 F
1187 6297 0.251341 GGGATCACCTGCAACCAAGT 60.251 55.0 0.0 0.0 35.85 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 6797 0.368227 GTGACATTGAAGAGCTCGCG 59.632 55.000 8.37 0.00 0.00 5.87 R
2070 7181 0.747255 ATAGCCGTAGTGCAGTCAGG 59.253 55.000 0.00 3.89 0.00 3.86 R
3152 8288 4.730487 GCAGGAGCCACTGACATT 57.270 55.556 9.25 0.00 40.97 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.380084 TATTCTGACGGTCTTGGCAC 57.620 50.000 9.88 0.00 0.00 5.01
21 22 0.396435 ATTCTGACGGTCTTGGCACA 59.604 50.000 9.88 0.00 0.00 4.57
22 23 0.396435 TTCTGACGGTCTTGGCACAT 59.604 50.000 9.88 0.00 39.30 3.21
24 25 1.300971 CTGACGGTCTTGGCACATGG 61.301 60.000 9.88 0.00 39.30 3.66
25 26 1.003839 GACGGTCTTGGCACATGGA 60.004 57.895 0.00 0.00 39.30 3.41
26 27 1.003355 ACGGTCTTGGCACATGGAG 60.003 57.895 0.00 0.00 39.30 3.86
28 29 0.606401 CGGTCTTGGCACATGGAGTT 60.606 55.000 0.00 0.00 39.30 3.01
30 31 1.545428 GGTCTTGGCACATGGAGTTCA 60.545 52.381 0.00 0.00 39.30 3.18
32 33 2.622942 GTCTTGGCACATGGAGTTCAAA 59.377 45.455 0.00 0.00 39.30 2.69
34 35 4.458989 GTCTTGGCACATGGAGTTCAAATA 59.541 41.667 0.00 0.00 39.30 1.40
36 37 6.318648 GTCTTGGCACATGGAGTTCAAATATA 59.681 38.462 0.00 0.00 39.30 0.86
37 38 7.013655 GTCTTGGCACATGGAGTTCAAATATAT 59.986 37.037 0.00 0.00 39.30 0.86
39 40 8.759481 TTGGCACATGGAGTTCAAATATATAA 57.241 30.769 0.00 0.00 39.30 0.98
41 42 9.194972 TGGCACATGGAGTTCAAATATATAAAA 57.805 29.630 0.00 0.00 0.00 1.52
86 87 8.007405 TGTTTAAGAGAGATACGAATCATCCA 57.993 34.615 0.00 0.00 34.28 3.41
87 88 8.474831 TGTTTAAGAGAGATACGAATCATCCAA 58.525 33.333 0.00 0.00 34.28 3.53
88 89 9.314321 GTTTAAGAGAGATACGAATCATCCAAA 57.686 33.333 0.00 0.00 34.28 3.28
89 90 9.884636 TTTAAGAGAGATACGAATCATCCAAAA 57.115 29.630 0.00 0.00 34.28 2.44
94 95 8.783833 AGAGATACGAATCATCCAAAATATGG 57.216 34.615 0.00 0.00 41.66 2.74
128 129 9.918630 AATTAAAGTGATGGATTTCACAAAGAG 57.081 29.630 7.28 0.00 46.81 2.85
129 130 8.690203 TTAAAGTGATGGATTTCACAAAGAGA 57.310 30.769 7.28 0.00 46.81 3.10
131 132 4.699257 AGTGATGGATTTCACAAAGAGAGC 59.301 41.667 7.28 0.00 46.81 4.09
133 134 3.401033 TGGATTTCACAAAGAGAGCGA 57.599 42.857 0.00 0.00 0.00 4.93
140 141 2.227626 TCACAAAGAGAGCGAGAGTCTG 59.772 50.000 0.00 0.00 0.00 3.51
141 142 2.030363 CACAAAGAGAGCGAGAGTCTGT 60.030 50.000 0.00 0.00 0.00 3.41
143 144 0.525761 AAGAGAGCGAGAGTCTGTGC 59.474 55.000 0.00 0.94 0.00 4.57
144 145 0.322456 AGAGAGCGAGAGTCTGTGCT 60.322 55.000 14.66 14.66 41.11 4.40
145 146 0.525761 GAGAGCGAGAGTCTGTGCTT 59.474 55.000 15.60 7.73 37.91 3.91
147 148 0.242286 GAGCGAGAGTCTGTGCTTCA 59.758 55.000 15.60 0.00 37.91 3.02
148 149 0.243365 AGCGAGAGTCTGTGCTTCAG 59.757 55.000 10.05 3.68 44.85 3.02
151 152 1.470494 CGAGAGTCTGTGCTTCAGCTA 59.530 52.381 0.00 0.00 43.32 3.32
152 153 2.477694 CGAGAGTCTGTGCTTCAGCTAG 60.478 54.545 0.00 0.00 43.32 3.42
154 155 3.161067 AGAGTCTGTGCTTCAGCTAGAA 58.839 45.455 0.00 0.00 43.32 2.10
157 158 4.314121 AGTCTGTGCTTCAGCTAGAAAAG 58.686 43.478 0.00 0.00 43.32 2.27
158 159 4.039730 AGTCTGTGCTTCAGCTAGAAAAGA 59.960 41.667 0.00 0.00 43.32 2.52
160 161 4.281941 TCTGTGCTTCAGCTAGAAAAGAGA 59.718 41.667 0.00 0.00 43.32 3.10
162 163 4.281941 TGTGCTTCAGCTAGAAAAGAGAGA 59.718 41.667 0.00 0.00 42.66 3.10
163 164 5.221521 TGTGCTTCAGCTAGAAAAGAGAGAA 60.222 40.000 0.00 0.00 42.66 2.87
165 166 6.203723 GTGCTTCAGCTAGAAAAGAGAGAAAA 59.796 38.462 0.00 0.00 42.66 2.29
166 167 6.767902 TGCTTCAGCTAGAAAAGAGAGAAAAA 59.232 34.615 0.00 0.00 42.66 1.94
169 170 8.682936 TTCAGCTAGAAAAGAGAGAAAAATGT 57.317 30.769 0.00 0.00 32.05 2.71
171 172 7.716998 TCAGCTAGAAAAGAGAGAAAAATGTGT 59.283 33.333 0.00 0.00 0.00 3.72
172 173 8.014517 CAGCTAGAAAAGAGAGAAAAATGTGTC 58.985 37.037 0.00 0.00 0.00 3.67
173 174 7.936301 AGCTAGAAAAGAGAGAAAAATGTGTCT 59.064 33.333 0.00 0.00 0.00 3.41
174 175 8.563732 GCTAGAAAAGAGAGAAAAATGTGTCTT 58.436 33.333 0.00 0.00 0.00 3.01
197 198 4.386867 TTTCTGACTATGGTAGAAGCCG 57.613 45.455 0.00 0.00 32.59 5.52
199 200 1.409064 CTGACTATGGTAGAAGCCGCA 59.591 52.381 0.00 0.00 0.00 5.69
203 204 1.137086 CTATGGTAGAAGCCGCACAGT 59.863 52.381 0.00 0.00 0.00 3.55
204 205 0.391661 ATGGTAGAAGCCGCACAGTG 60.392 55.000 0.00 0.00 0.00 3.66
205 206 1.292223 GGTAGAAGCCGCACAGTGA 59.708 57.895 4.15 0.00 0.00 3.41
207 208 1.676014 GGTAGAAGCCGCACAGTGATT 60.676 52.381 4.15 0.00 0.00 2.57
210 211 0.874390 GAAGCCGCACAGTGATTTGA 59.126 50.000 4.15 0.00 0.00 2.69
211 212 0.593128 AAGCCGCACAGTGATTTGAC 59.407 50.000 4.15 0.00 0.00 3.18
213 214 0.593128 GCCGCACAGTGATTTGACTT 59.407 50.000 4.15 0.00 0.00 3.01
215 216 1.872952 CCGCACAGTGATTTGACTTGA 59.127 47.619 4.15 0.00 0.00 3.02
216 217 2.290367 CCGCACAGTGATTTGACTTGAA 59.710 45.455 4.15 0.00 0.00 2.69
217 218 3.243035 CCGCACAGTGATTTGACTTGAAA 60.243 43.478 4.15 0.00 0.00 2.69
218 219 4.539870 CGCACAGTGATTTGACTTGAAAT 58.460 39.130 4.15 0.00 0.00 2.17
220 221 5.565259 CGCACAGTGATTTGACTTGAAATAC 59.435 40.000 4.15 0.00 0.00 1.89
221 222 5.565259 GCACAGTGATTTGACTTGAAATACG 59.435 40.000 4.15 0.00 0.00 3.06
222 223 6.658831 CACAGTGATTTGACTTGAAATACGT 58.341 36.000 0.00 0.00 0.00 3.57
229 230 7.442969 TGATTTGACTTGAAATACGTACAAGGT 59.557 33.333 21.54 11.62 43.28 3.50
230 231 6.533819 TTGACTTGAAATACGTACAAGGTG 57.466 37.500 21.54 6.24 43.28 4.00
231 232 5.845103 TGACTTGAAATACGTACAAGGTGA 58.155 37.500 21.54 8.06 43.28 4.02
232 233 6.282167 TGACTTGAAATACGTACAAGGTGAA 58.718 36.000 21.54 7.48 43.28 3.18
234 235 7.442969 TGACTTGAAATACGTACAAGGTGAAAT 59.557 33.333 21.54 6.19 43.28 2.17
236 237 5.933790 TGAAATACGTACAAGGTGAAATGC 58.066 37.500 0.00 0.00 0.00 3.56
238 239 0.515564 ACGTACAAGGTGAAATGCGC 59.484 50.000 0.00 0.00 0.00 6.09
239 240 0.515127 CGTACAAGGTGAAATGCGCA 59.485 50.000 14.96 14.96 0.00 6.09
243 244 3.216147 ACAAGGTGAAATGCGCAATAC 57.784 42.857 17.11 11.14 0.00 1.89
244 245 2.556189 ACAAGGTGAAATGCGCAATACA 59.444 40.909 17.11 12.07 0.00 2.29
246 247 4.397730 ACAAGGTGAAATGCGCAATACATA 59.602 37.500 17.11 0.00 0.00 2.29
247 248 5.067674 ACAAGGTGAAATGCGCAATACATAT 59.932 36.000 17.11 4.84 0.00 1.78
248 249 6.262049 ACAAGGTGAAATGCGCAATACATATA 59.738 34.615 17.11 0.00 0.00 0.86
250 251 8.450180 CAAGGTGAAATGCGCAATACATATATA 58.550 33.333 17.11 0.00 0.00 0.86
260 261 9.691362 TGCGCAATACATATATATATACAGTGG 57.309 33.333 8.16 8.87 0.00 4.00
268 269 9.744125 ACATATATATATACAGTGGACCCCAAT 57.256 33.333 4.54 0.00 34.18 3.16
272 273 1.195442 TACAGTGGACCCCAATCGCA 61.195 55.000 0.00 0.00 34.18 5.10
274 275 2.033448 GTGGACCCCAATCGCACA 59.967 61.111 0.00 0.00 34.18 4.57
275 276 2.040544 GTGGACCCCAATCGCACAG 61.041 63.158 0.00 0.00 34.18 3.66
276 277 2.220586 TGGACCCCAATCGCACAGA 61.221 57.895 0.00 0.00 0.00 3.41
279 280 0.179000 GACCCCAATCGCACAGATCT 59.821 55.000 0.00 0.00 38.98 2.75
280 281 0.620556 ACCCCAATCGCACAGATCTT 59.379 50.000 0.00 0.00 38.98 2.40
281 282 1.837439 ACCCCAATCGCACAGATCTTA 59.163 47.619 0.00 0.00 38.98 2.10
282 283 2.158900 ACCCCAATCGCACAGATCTTAG 60.159 50.000 0.00 0.00 38.98 2.18
283 284 2.103094 CCCCAATCGCACAGATCTTAGA 59.897 50.000 0.00 0.00 38.98 2.10
284 285 3.388308 CCCAATCGCACAGATCTTAGAG 58.612 50.000 0.00 0.00 38.98 2.43
286 287 4.442052 CCCAATCGCACAGATCTTAGAGAA 60.442 45.833 0.00 0.00 38.98 2.87
287 288 5.111989 CCAATCGCACAGATCTTAGAGAAA 58.888 41.667 0.00 0.00 38.98 2.52
288 289 5.582269 CCAATCGCACAGATCTTAGAGAAAA 59.418 40.000 0.00 0.00 38.98 2.29
290 291 6.841443 ATCGCACAGATCTTAGAGAAAATG 57.159 37.500 0.00 0.00 33.45 2.32
291 292 5.965922 TCGCACAGATCTTAGAGAAAATGA 58.034 37.500 0.00 0.00 0.00 2.57
292 293 6.398095 TCGCACAGATCTTAGAGAAAATGAA 58.602 36.000 0.00 0.00 0.00 2.57
308 309 9.727627 GAGAAAATGAATGATGAAAGATGTACC 57.272 33.333 0.00 0.00 0.00 3.34
310 311 7.864108 AAATGAATGATGAAAGATGTACCGA 57.136 32.000 0.00 0.00 0.00 4.69
312 313 9.559732 AAATGAATGATGAAAGATGTACCGATA 57.440 29.630 0.00 0.00 0.00 2.92
313 314 8.768957 ATGAATGATGAAAGATGTACCGATAG 57.231 34.615 0.00 0.00 0.00 2.08
332 333 1.089112 GGTAATGTTACCGTGCACCC 58.911 55.000 12.15 0.00 43.30 4.61
337 338 1.375523 GTTACCGTGCACCCCAGAG 60.376 63.158 12.15 0.00 0.00 3.35
471 472 7.190871 GTGGACTTTTCATAGAAAACAAACGA 58.809 34.615 1.09 0.00 0.00 3.85
625 626 1.677637 CGAGTAGGAAGGAGGGTGGC 61.678 65.000 0.00 0.00 0.00 5.01
626 627 0.617820 GAGTAGGAAGGAGGGTGGCA 60.618 60.000 0.00 0.00 0.00 4.92
627 628 0.618968 AGTAGGAAGGAGGGTGGCAG 60.619 60.000 0.00 0.00 0.00 4.85
628 629 1.995626 TAGGAAGGAGGGTGGCAGC 60.996 63.158 8.47 8.47 0.00 5.25
629 630 2.763988 TAGGAAGGAGGGTGGCAGCA 62.764 60.000 19.48 0.00 0.00 4.41
630 631 2.436109 GAAGGAGGGTGGCAGCAA 59.564 61.111 19.48 0.00 0.00 3.91
631 632 1.228552 GAAGGAGGGTGGCAGCAAA 60.229 57.895 19.48 0.00 0.00 3.68
632 633 1.527433 GAAGGAGGGTGGCAGCAAAC 61.527 60.000 19.48 7.30 0.00 2.93
633 634 2.011617 AAGGAGGGTGGCAGCAAACT 62.012 55.000 19.48 9.54 0.00 2.66
637 638 1.138859 GAGGGTGGCAGCAAACTTTTT 59.861 47.619 19.48 0.00 0.00 1.94
641 642 2.863740 GGTGGCAGCAAACTTTTTACAC 59.136 45.455 12.58 0.00 0.00 2.90
642 643 2.863740 GTGGCAGCAAACTTTTTACACC 59.136 45.455 0.00 0.00 0.00 4.16
643 644 2.497675 TGGCAGCAAACTTTTTACACCA 59.502 40.909 0.00 0.00 0.00 4.17
649 650 3.308595 GCAAACTTTTTACACCAACAGCC 59.691 43.478 0.00 0.00 0.00 4.85
712 733 1.772156 TGATCCACACCCACCCACA 60.772 57.895 0.00 0.00 0.00 4.17
764 785 4.704833 CTGGGCCACGACCACCAG 62.705 72.222 0.00 0.00 43.87 4.00
815 836 2.629617 CAACAGAAATGGCAAGTTCCCT 59.370 45.455 9.85 0.00 30.59 4.20
826 847 0.112412 AAGTTCCCTTTGCCCACGAT 59.888 50.000 0.00 0.00 0.00 3.73
829 850 1.065709 GTTCCCTTTGCCCACGATAGA 60.066 52.381 0.00 0.00 41.38 1.98
979 6089 0.181114 TGCTCTCCACACAGCAGTTT 59.819 50.000 0.00 0.00 40.80 2.66
1036 6146 2.271173 CTCTGATGCTGCTGGCCA 59.729 61.111 4.71 4.71 40.92 5.36
1078 6188 2.125350 GCACCGAGCAGGAGAAGG 60.125 66.667 5.19 0.00 45.00 3.46
1187 6297 0.251341 GGGATCACCTGCAACCAAGT 60.251 55.000 0.00 0.00 35.85 3.16
1249 6359 4.570663 GGTCCATCTCGCCGTCCG 62.571 72.222 0.00 0.00 38.61 4.79
1306 6416 2.260434 GTAACTCGCTGTCCGGCA 59.740 61.111 0.00 0.00 37.59 5.69
1308 6418 2.273179 TAACTCGCTGTCCGGCACT 61.273 57.895 0.00 0.00 37.59 4.40
1412 6522 3.329889 ATCCTCAACCCCTGCGCA 61.330 61.111 10.98 10.98 0.00 6.09
1495 6605 5.246656 ACATGGAAAGCAATGGAGAATTTGA 59.753 36.000 0.00 0.00 0.00 2.69
1551 6661 0.810031 AGATACCAACGACGCCATGC 60.810 55.000 0.00 0.00 0.00 4.06
1672 6782 1.298859 CGCTGGCTACAACAACCTCC 61.299 60.000 0.00 0.00 0.00 4.30
1687 6797 0.543749 CCTCCATGGGACTCTTCCAC 59.456 60.000 13.02 0.00 44.98 4.02
2070 7181 3.199880 AGCATATACTCCTGCACCAAC 57.800 47.619 0.00 0.00 40.88 3.77
2157 7268 1.970092 AGTCCCTCTCGTTCCTATCG 58.030 55.000 0.00 0.00 0.00 2.92
2535 7646 2.479389 GCTGAGATCAGACAAGACTCCG 60.479 54.545 13.98 0.00 46.59 4.63
2592 7704 5.220472 CGAGAACACATTTATGCAGTACCTG 60.220 44.000 0.00 0.00 34.12 4.00
2688 7800 5.701290 CGGACAGTTAAAAGGACTCATTTCT 59.299 40.000 0.00 0.00 0.00 2.52
2990 8120 1.202651 AGGTCCAGTCTCCACAAAACG 60.203 52.381 0.00 0.00 0.00 3.60
3072 8205 9.402320 GTCCTATATGATCAGATAGTCTTAGCA 57.598 37.037 27.39 7.25 32.31 3.49
3152 8288 2.170397 TGGTTCTCAGTTCAGCAAGACA 59.830 45.455 0.00 0.00 0.00 3.41
3200 8336 4.478317 AGATCAACATCCCTGGTAAATCCA 59.522 41.667 0.00 0.00 45.01 3.41
3258 8396 9.425893 CATGTAAATGAAAATAGTTAGCGAGTG 57.574 33.333 0.00 0.00 0.00 3.51
3279 8417 6.169094 AGTGAGGAAATATCAAGAGTGTGTG 58.831 40.000 0.00 0.00 0.00 3.82
3281 8419 6.091441 GTGAGGAAATATCAAGAGTGTGTGAC 59.909 42.308 0.00 0.00 0.00 3.67
3283 8421 5.249393 AGGAAATATCAAGAGTGTGTGACCT 59.751 40.000 0.00 0.00 0.00 3.85
3284 8422 6.440647 AGGAAATATCAAGAGTGTGTGACCTA 59.559 38.462 0.00 0.00 0.00 3.08
3285 8423 6.535508 GGAAATATCAAGAGTGTGTGACCTAC 59.464 42.308 0.00 0.00 0.00 3.18
3286 8424 6.859112 AATATCAAGAGTGTGTGACCTACT 57.141 37.500 0.00 0.00 0.00 2.57
3287 8425 7.956328 AATATCAAGAGTGTGTGACCTACTA 57.044 36.000 0.00 0.00 0.00 1.82
3290 8428 7.956328 ATCAAGAGTGTGTGACCTACTAATA 57.044 36.000 0.00 0.00 0.00 0.98
3375 8513 6.947376 TCATCCAGGATCAGTGATGAATAT 57.053 37.500 11.20 0.00 40.30 1.28
3419 8557 3.701040 GGCACCATACAACCATGAGAAAT 59.299 43.478 0.00 0.00 0.00 2.17
3461 8601 7.701539 ACATGCAGTTGAGATTTAACCAATA 57.298 32.000 0.00 0.00 0.00 1.90
3476 8616 2.821969 ACCAATAAAGCAGACTGGCAAG 59.178 45.455 4.26 0.00 35.83 4.01
3481 8621 6.350445 CCAATAAAGCAGACTGGCAAGTTAAT 60.350 38.462 4.26 0.00 36.52 1.40
3490 8630 8.458843 GCAGACTGGCAAGTTAATTAGATTAAA 58.541 33.333 4.26 0.00 36.52 1.52
3514 8654 7.959658 ATAATTCATCATGGACAAAACAGGA 57.040 32.000 0.00 0.00 32.85 3.86
3515 8655 5.649782 ATTCATCATGGACAAAACAGGAC 57.350 39.130 0.00 0.00 30.93 3.85
3520 8660 2.649531 TGGACAAAACAGGACGGAAT 57.350 45.000 0.00 0.00 0.00 3.01
3537 8678 4.765856 ACGGAATCCTAATAGCGATACAGT 59.234 41.667 0.00 0.00 0.00 3.55
3545 8686 4.342862 AATAGCGATACAGTTGCCATCT 57.657 40.909 0.00 0.00 38.03 2.90
3551 8692 4.051922 CGATACAGTTGCCATCTAACTCC 58.948 47.826 0.00 0.00 36.29 3.85
3554 8695 4.307032 ACAGTTGCCATCTAACTCCAAT 57.693 40.909 0.00 0.00 36.29 3.16
3555 8696 4.265073 ACAGTTGCCATCTAACTCCAATC 58.735 43.478 0.00 0.00 36.29 2.67
3557 8698 4.701651 CAGTTGCCATCTAACTCCAATCAA 59.298 41.667 0.00 0.00 36.29 2.57
3558 8699 4.946157 AGTTGCCATCTAACTCCAATCAAG 59.054 41.667 0.00 0.00 33.28 3.02
3559 8700 4.574674 TGCCATCTAACTCCAATCAAGT 57.425 40.909 0.00 0.00 0.00 3.16
3560 8701 4.517285 TGCCATCTAACTCCAATCAAGTC 58.483 43.478 0.00 0.00 0.00 3.01
3561 8702 3.557595 GCCATCTAACTCCAATCAAGTCG 59.442 47.826 0.00 0.00 0.00 4.18
3562 8703 4.680708 GCCATCTAACTCCAATCAAGTCGA 60.681 45.833 0.00 0.00 0.00 4.20
3563 8704 5.046529 CCATCTAACTCCAATCAAGTCGAG 58.953 45.833 0.00 0.00 0.00 4.04
3564 8705 4.720649 TCTAACTCCAATCAAGTCGAGG 57.279 45.455 0.00 0.00 0.00 4.63
3565 8706 4.341487 TCTAACTCCAATCAAGTCGAGGA 58.659 43.478 0.00 0.00 0.00 3.71
3566 8707 4.956700 TCTAACTCCAATCAAGTCGAGGAT 59.043 41.667 0.00 0.00 0.00 3.24
3567 8708 3.810310 ACTCCAATCAAGTCGAGGATC 57.190 47.619 0.00 0.00 0.00 3.36
3579 8720 3.354131 GAGGATCGCAGTTCTCCAC 57.646 57.895 0.00 0.00 0.00 4.02
3580 8721 0.532573 GAGGATCGCAGTTCTCCACA 59.467 55.000 0.00 0.00 0.00 4.17
3581 8722 0.534412 AGGATCGCAGTTCTCCACAG 59.466 55.000 0.00 0.00 0.00 3.66
3582 8723 1.086634 GGATCGCAGTTCTCCACAGC 61.087 60.000 0.00 0.00 34.56 4.40
3583 8724 0.390340 GATCGCAGTTCTCCACAGCA 60.390 55.000 0.00 0.00 37.78 4.41
3584 8725 0.035317 ATCGCAGTTCTCCACAGCAA 59.965 50.000 0.00 0.00 37.78 3.91
3585 8726 0.179059 TCGCAGTTCTCCACAGCAAA 60.179 50.000 0.00 0.00 37.78 3.68
3586 8727 0.040958 CGCAGTTCTCCACAGCAAAC 60.041 55.000 0.00 0.00 37.78 2.93
3587 8728 1.024271 GCAGTTCTCCACAGCAAACA 58.976 50.000 0.00 0.00 37.83 2.83
3588 8729 1.405105 GCAGTTCTCCACAGCAAACAA 59.595 47.619 0.00 0.00 37.83 2.83
3589 8730 2.796032 GCAGTTCTCCACAGCAAACAAC 60.796 50.000 0.00 0.00 37.83 3.32
3590 8731 2.423185 CAGTTCTCCACAGCAAACAACA 59.577 45.455 0.00 0.00 0.00 3.33
3591 8732 3.088532 AGTTCTCCACAGCAAACAACAA 58.911 40.909 0.00 0.00 0.00 2.83
3592 8733 3.129287 AGTTCTCCACAGCAAACAACAAG 59.871 43.478 0.00 0.00 0.00 3.16
3593 8734 1.405105 TCTCCACAGCAAACAACAAGC 59.595 47.619 0.00 0.00 0.00 4.01
3594 8735 0.100325 TCCACAGCAAACAACAAGCG 59.900 50.000 0.00 0.00 0.00 4.68
3595 8736 1.481819 CCACAGCAAACAACAAGCGC 61.482 55.000 0.00 0.00 0.00 5.92
3596 8737 0.526096 CACAGCAAACAACAAGCGCT 60.526 50.000 2.64 2.64 0.00 5.92
3597 8738 2.209872 CAGCAAACAACAAGCGCTG 58.790 52.632 12.58 8.13 43.55 5.18
3598 8739 2.105984 AGCAAACAACAAGCGCTGA 58.894 47.368 12.58 0.00 0.00 4.26
3599 8740 0.029834 AGCAAACAACAAGCGCTGAG 59.970 50.000 12.58 10.04 0.00 3.35
3600 8741 0.029300 GCAAACAACAAGCGCTGAGA 59.971 50.000 12.58 0.00 0.00 3.27
3601 8742 1.923316 GCAAACAACAAGCGCTGAGAG 60.923 52.381 12.58 4.44 0.00 3.20
3602 8743 1.599071 CAAACAACAAGCGCTGAGAGA 59.401 47.619 12.58 0.00 0.00 3.10
3603 8744 1.953559 AACAACAAGCGCTGAGAGAA 58.046 45.000 12.58 0.00 0.00 2.87
3604 8745 2.175878 ACAACAAGCGCTGAGAGAAT 57.824 45.000 12.58 0.00 0.00 2.40
3605 8746 3.319137 ACAACAAGCGCTGAGAGAATA 57.681 42.857 12.58 0.00 0.00 1.75
3606 8747 3.866651 ACAACAAGCGCTGAGAGAATAT 58.133 40.909 12.58 0.00 0.00 1.28
3607 8748 4.256920 ACAACAAGCGCTGAGAGAATATT 58.743 39.130 12.58 0.00 0.00 1.28
3608 8749 4.697352 ACAACAAGCGCTGAGAGAATATTT 59.303 37.500 12.58 0.00 0.00 1.40
3609 8750 5.163814 ACAACAAGCGCTGAGAGAATATTTC 60.164 40.000 12.58 0.00 0.00 2.17
3610 8751 4.507710 ACAAGCGCTGAGAGAATATTTCA 58.492 39.130 12.58 0.00 0.00 2.69
3611 8752 4.569966 ACAAGCGCTGAGAGAATATTTCAG 59.430 41.667 12.58 10.17 40.93 3.02
3612 8753 4.662468 AGCGCTGAGAGAATATTTCAGA 57.338 40.909 10.39 0.00 40.54 3.27
3613 8754 5.016051 AGCGCTGAGAGAATATTTCAGAA 57.984 39.130 10.39 0.00 40.54 3.02
3614 8755 5.423015 AGCGCTGAGAGAATATTTCAGAAA 58.577 37.500 10.39 0.00 40.54 2.52
3615 8756 6.054295 AGCGCTGAGAGAATATTTCAGAAAT 58.946 36.000 10.39 13.06 40.54 2.17
3616 8757 6.018098 AGCGCTGAGAGAATATTTCAGAAATG 60.018 38.462 10.39 6.56 40.54 2.32
3617 8758 6.238320 GCGCTGAGAGAATATTTCAGAAATGT 60.238 38.462 17.38 8.84 40.54 2.71
3618 8759 7.042456 GCGCTGAGAGAATATTTCAGAAATGTA 60.042 37.037 17.38 0.00 40.54 2.29
3619 8760 8.272176 CGCTGAGAGAATATTTCAGAAATGTAC 58.728 37.037 17.38 8.68 40.54 2.90
3620 8761 9.102757 GCTGAGAGAATATTTCAGAAATGTACA 57.897 33.333 17.38 0.00 40.54 2.90
3622 8763 9.087424 TGAGAGAATATTTCAGAAATGTACACG 57.913 33.333 17.38 0.00 32.38 4.49
3623 8764 9.302345 GAGAGAATATTTCAGAAATGTACACGA 57.698 33.333 17.38 0.00 32.38 4.35
3624 8765 9.653287 AGAGAATATTTCAGAAATGTACACGAA 57.347 29.630 17.38 0.00 32.38 3.85
3625 8766 9.907576 GAGAATATTTCAGAAATGTACACGAAG 57.092 33.333 17.38 0.00 32.38 3.79
3626 8767 9.436957 AGAATATTTCAGAAATGTACACGAAGT 57.563 29.630 17.38 0.00 34.49 3.01
3630 8771 6.442487 TTCAGAAATGTACACGAAGTTACG 57.558 37.500 0.00 0.00 41.61 3.18
3631 8772 5.761003 TCAGAAATGTACACGAAGTTACGA 58.239 37.500 0.00 0.00 41.61 3.43
3632 8773 6.207928 TCAGAAATGTACACGAAGTTACGAA 58.792 36.000 0.00 0.00 41.61 3.85
3633 8774 6.696583 TCAGAAATGTACACGAAGTTACGAAA 59.303 34.615 0.00 0.00 41.61 3.46
3634 8775 6.784227 CAGAAATGTACACGAAGTTACGAAAC 59.216 38.462 0.00 0.00 41.61 2.78
3635 8776 6.476380 AGAAATGTACACGAAGTTACGAAACA 59.524 34.615 0.00 0.00 41.61 2.83
3636 8777 5.817616 ATGTACACGAAGTTACGAAACAG 57.182 39.130 0.00 0.00 41.61 3.16
3637 8778 4.919206 TGTACACGAAGTTACGAAACAGA 58.081 39.130 0.00 0.00 41.61 3.41
3638 8779 4.971830 TGTACACGAAGTTACGAAACAGAG 59.028 41.667 0.00 0.00 41.61 3.35
3639 8780 4.297299 ACACGAAGTTACGAAACAGAGA 57.703 40.909 0.00 0.00 41.61 3.10
3640 8781 4.868067 ACACGAAGTTACGAAACAGAGAT 58.132 39.130 0.00 0.00 41.61 2.75
3641 8782 4.680110 ACACGAAGTTACGAAACAGAGATG 59.320 41.667 0.00 0.00 41.61 2.90
3642 8783 3.673809 ACGAAGTTACGAAACAGAGATGC 59.326 43.478 0.00 0.00 37.78 3.91
3643 8784 3.921021 CGAAGTTACGAAACAGAGATGCT 59.079 43.478 0.00 0.00 38.12 3.79
3644 8785 4.030753 CGAAGTTACGAAACAGAGATGCTC 59.969 45.833 0.00 0.00 38.12 4.26
3645 8786 3.502920 AGTTACGAAACAGAGATGCTCG 58.497 45.455 0.00 0.00 38.12 5.03
3646 8787 3.190744 AGTTACGAAACAGAGATGCTCGA 59.809 43.478 0.00 0.00 38.12 4.04
3647 8788 2.724977 ACGAAACAGAGATGCTCGAA 57.275 45.000 0.00 0.00 35.36 3.71
3648 8789 3.238108 ACGAAACAGAGATGCTCGAAT 57.762 42.857 0.00 0.00 35.36 3.34
3649 8790 3.589988 ACGAAACAGAGATGCTCGAATT 58.410 40.909 0.00 0.00 35.36 2.17
3650 8791 3.369147 ACGAAACAGAGATGCTCGAATTG 59.631 43.478 0.00 0.00 35.36 2.32
3651 8792 3.242220 CGAAACAGAGATGCTCGAATTGG 60.242 47.826 0.00 0.00 35.36 3.16
3652 8793 3.340814 AACAGAGATGCTCGAATTGGT 57.659 42.857 0.00 0.00 35.36 3.67
3653 8794 4.471904 AACAGAGATGCTCGAATTGGTA 57.528 40.909 0.00 0.00 35.36 3.25
3654 8795 3.786635 ACAGAGATGCTCGAATTGGTAC 58.213 45.455 0.00 0.00 35.36 3.34
3655 8796 3.449018 ACAGAGATGCTCGAATTGGTACT 59.551 43.478 0.00 0.00 35.36 2.73
3656 8797 4.645136 ACAGAGATGCTCGAATTGGTACTA 59.355 41.667 0.00 0.00 35.36 1.82
3657 8798 4.979197 CAGAGATGCTCGAATTGGTACTAC 59.021 45.833 0.00 0.00 35.36 2.73
3658 8799 4.645136 AGAGATGCTCGAATTGGTACTACA 59.355 41.667 0.00 0.00 35.36 2.74
3659 8800 5.127194 AGAGATGCTCGAATTGGTACTACAA 59.873 40.000 0.00 0.00 35.36 2.41
3660 8801 5.918608 AGATGCTCGAATTGGTACTACAAT 58.081 37.500 0.00 0.00 42.56 2.71
3661 8802 5.755375 AGATGCTCGAATTGGTACTACAATG 59.245 40.000 0.00 0.00 40.71 2.82
3662 8803 4.827692 TGCTCGAATTGGTACTACAATGT 58.172 39.130 0.00 0.00 40.71 2.71
3663 8804 5.242434 TGCTCGAATTGGTACTACAATGTT 58.758 37.500 0.00 0.00 40.71 2.71
3664 8805 5.121611 TGCTCGAATTGGTACTACAATGTTG 59.878 40.000 0.00 0.00 40.71 3.33
3665 8806 5.539582 TCGAATTGGTACTACAATGTTGC 57.460 39.130 0.00 0.00 40.71 4.17
3666 8807 4.998033 TCGAATTGGTACTACAATGTTGCA 59.002 37.500 0.00 0.00 40.71 4.08
3667 8808 5.086058 CGAATTGGTACTACAATGTTGCAC 58.914 41.667 0.00 0.00 40.71 4.57
3668 8809 4.678509 ATTGGTACTACAATGTTGCACG 57.321 40.909 0.00 0.00 39.47 5.34
3669 8810 3.388345 TGGTACTACAATGTTGCACGA 57.612 42.857 0.00 0.00 0.00 4.35
3670 8811 3.729966 TGGTACTACAATGTTGCACGAA 58.270 40.909 0.00 0.00 0.00 3.85
3671 8812 4.320023 TGGTACTACAATGTTGCACGAAT 58.680 39.130 0.00 0.00 0.00 3.34
3672 8813 4.757657 TGGTACTACAATGTTGCACGAATT 59.242 37.500 0.00 0.00 0.00 2.17
3673 8814 5.932883 TGGTACTACAATGTTGCACGAATTA 59.067 36.000 0.00 0.00 0.00 1.40
3674 8815 6.427242 TGGTACTACAATGTTGCACGAATTAA 59.573 34.615 0.00 0.00 0.00 1.40
3675 8816 6.959311 GGTACTACAATGTTGCACGAATTAAG 59.041 38.462 0.00 0.00 0.00 1.85
3676 8817 5.390613 ACTACAATGTTGCACGAATTAAGC 58.609 37.500 0.00 0.00 0.00 3.09
3677 8818 4.235939 ACAATGTTGCACGAATTAAGCA 57.764 36.364 0.00 0.00 36.32 3.91
3678 8819 4.229096 ACAATGTTGCACGAATTAAGCAG 58.771 39.130 0.00 0.00 39.72 4.24
3679 8820 2.330231 TGTTGCACGAATTAAGCAGC 57.670 45.000 0.00 6.26 39.72 5.25
3680 8821 1.879380 TGTTGCACGAATTAAGCAGCT 59.121 42.857 12.07 0.00 39.72 4.24
3681 8822 2.245096 GTTGCACGAATTAAGCAGCTG 58.755 47.619 10.11 10.11 39.72 4.24
3682 8823 0.168788 TGCACGAATTAAGCAGCTGC 59.831 50.000 31.53 31.53 42.49 5.25
3692 8833 3.583383 GCAGCTGCTCCGTGATTT 58.417 55.556 31.33 0.00 38.21 2.17
3693 8834 1.136147 GCAGCTGCTCCGTGATTTG 59.864 57.895 31.33 0.00 38.21 2.32
3694 8835 1.136147 CAGCTGCTCCGTGATTTGC 59.864 57.895 0.00 0.00 0.00 3.68
3695 8836 1.302752 AGCTGCTCCGTGATTTGCA 60.303 52.632 0.00 0.00 0.00 4.08
3696 8837 1.154150 GCTGCTCCGTGATTTGCAC 60.154 57.895 0.00 0.00 44.21 4.57
3709 8850 6.623223 GTGATTTGCACAAGAGCTTAATTC 57.377 37.500 0.00 0.00 46.91 2.17
3710 8851 5.284660 GTGATTTGCACAAGAGCTTAATTCG 59.715 40.000 0.00 0.00 46.91 3.34
3711 8852 5.181056 TGATTTGCACAAGAGCTTAATTCGA 59.819 36.000 0.00 0.00 34.99 3.71
3712 8853 4.668576 TTGCACAAGAGCTTAATTCGAG 57.331 40.909 0.00 0.00 34.99 4.04
3713 8854 3.002791 TGCACAAGAGCTTAATTCGAGG 58.997 45.455 0.00 0.00 34.99 4.63
3714 8855 2.223135 GCACAAGAGCTTAATTCGAGGC 60.223 50.000 0.00 0.00 0.00 4.70
3715 8856 3.002791 CACAAGAGCTTAATTCGAGGCA 58.997 45.455 0.00 0.00 0.00 4.75
3716 8857 3.624861 CACAAGAGCTTAATTCGAGGCAT 59.375 43.478 0.00 0.00 0.00 4.40
3717 8858 4.095483 CACAAGAGCTTAATTCGAGGCATT 59.905 41.667 0.00 0.00 0.00 3.56
3718 8859 4.702131 ACAAGAGCTTAATTCGAGGCATTT 59.298 37.500 0.00 0.00 0.00 2.32
3719 8860 5.880332 ACAAGAGCTTAATTCGAGGCATTTA 59.120 36.000 0.00 0.00 0.00 1.40
3720 8861 5.993106 AGAGCTTAATTCGAGGCATTTAC 57.007 39.130 0.00 0.00 0.00 2.01
3721 8862 5.428253 AGAGCTTAATTCGAGGCATTTACA 58.572 37.500 0.00 0.00 0.00 2.41
3722 8863 5.525378 AGAGCTTAATTCGAGGCATTTACAG 59.475 40.000 0.00 0.00 0.00 2.74
3723 8864 4.035675 AGCTTAATTCGAGGCATTTACAGC 59.964 41.667 0.00 0.00 0.00 4.40
3729 8870 3.196648 GGCATTTACAGCCGGGTG 58.803 61.111 31.30 31.30 43.15 4.61
3730 8871 1.377987 GGCATTTACAGCCGGGTGA 60.378 57.895 38.55 18.37 43.15 4.02
3731 8872 1.654023 GGCATTTACAGCCGGGTGAC 61.654 60.000 38.55 18.93 43.15 3.67
3732 8873 0.958382 GCATTTACAGCCGGGTGACA 60.958 55.000 38.55 22.72 0.00 3.58
3733 8874 1.086696 CATTTACAGCCGGGTGACAG 58.913 55.000 38.55 18.91 0.00 3.51
3742 8883 4.699522 GGGTGACAGGACGTGCCC 62.700 72.222 2.38 0.00 37.37 5.36
3743 8884 3.936203 GGTGACAGGACGTGCCCA 61.936 66.667 2.38 0.00 37.37 5.36
3744 8885 2.665185 GTGACAGGACGTGCCCAC 60.665 66.667 2.38 6.27 37.37 4.61
3745 8886 2.842462 TGACAGGACGTGCCCACT 60.842 61.111 2.38 0.00 37.37 4.00
3746 8887 2.357517 GACAGGACGTGCCCACTG 60.358 66.667 2.38 0.00 37.37 3.66
3747 8888 3.883744 GACAGGACGTGCCCACTGG 62.884 68.421 2.38 0.00 37.37 4.00
3761 8902 3.644606 CTGGCCTGTGTCAGCCCT 61.645 66.667 3.32 0.00 37.40 5.19
3762 8903 3.618780 CTGGCCTGTGTCAGCCCTC 62.619 68.421 3.32 0.00 37.40 4.30
3763 8904 4.416738 GGCCTGTGTCAGCCCTCC 62.417 72.222 0.00 0.00 0.00 4.30
3764 8905 3.325753 GCCTGTGTCAGCCCTCCT 61.326 66.667 0.00 0.00 0.00 3.69
3782 8923 3.474570 GCCTGCCTGGTCTCCGAT 61.475 66.667 0.00 0.00 38.35 4.18
3786 8927 0.460987 CTGCCTGGTCTCCGATCAAC 60.461 60.000 0.00 0.00 0.00 3.18
3801 8942 4.393155 AACGATGCTGGAGCGCCA 62.393 61.111 9.48 9.48 45.83 5.69
3864 9005 2.867624 TGCCTCTGCTTTGTCTTCATT 58.132 42.857 0.00 0.00 38.71 2.57
3903 9044 5.814705 GGATTCTTCTTCATCTTCGTGTGAT 59.185 40.000 0.00 0.00 0.00 3.06
3912 9053 3.868757 TCTTCGTGTGATAGGAAGTGG 57.131 47.619 10.61 0.00 46.37 4.00
3915 9056 0.462047 CGTGTGATAGGAAGTGGGCC 60.462 60.000 0.00 0.00 0.00 5.80
3980 10913 6.183360 CCTTTTGAACTCTACAAAGACAACGT 60.183 38.462 0.00 0.00 38.25 3.99
3987 10920 8.428186 AACTCTACAAAGACAACGTCATTTAA 57.572 30.769 0.00 0.00 34.60 1.52
3994 10927 9.268268 ACAAAGACAACGTCATTTAATCTTAGA 57.732 29.630 0.00 0.00 34.60 2.10
4083 11020 1.601903 TGACGTGGAATGAAGCAACAC 59.398 47.619 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.396435 ATGTGCCAAGACCGTCAGAA 59.604 50.000 0.40 0.00 0.00 3.02
4 5 0.320683 CATGTGCCAAGACCGTCAGA 60.321 55.000 0.40 0.00 0.00 3.27
8 9 1.003355 CTCCATGTGCCAAGACCGT 60.003 57.895 0.00 0.00 0.00 4.83
10 11 1.168714 GAACTCCATGTGCCAAGACC 58.831 55.000 0.00 0.00 0.00 3.85
11 12 1.896220 TGAACTCCATGTGCCAAGAC 58.104 50.000 0.00 0.00 0.00 3.01
12 13 2.655090 TTGAACTCCATGTGCCAAGA 57.345 45.000 0.00 0.00 0.00 3.02
14 15 8.759481 TTATATATTTGAACTCCATGTGCCAA 57.241 30.769 0.00 0.00 0.00 4.52
62 63 8.873215 TTGGATGATTCGTATCTCTCTTAAAC 57.127 34.615 3.59 0.00 0.00 2.01
63 64 9.884636 TTTTGGATGATTCGTATCTCTCTTAAA 57.115 29.630 3.59 4.70 0.00 1.52
67 68 9.650539 CATATTTTGGATGATTCGTATCTCTCT 57.349 33.333 3.59 0.00 0.00 3.10
111 112 3.935203 TCGCTCTCTTTGTGAAATCCATC 59.065 43.478 0.00 0.00 0.00 3.51
112 113 3.937706 CTCGCTCTCTTTGTGAAATCCAT 59.062 43.478 0.00 0.00 0.00 3.41
116 117 4.021544 AGACTCTCGCTCTCTTTGTGAAAT 60.022 41.667 0.00 0.00 0.00 2.17
117 118 3.319405 AGACTCTCGCTCTCTTTGTGAAA 59.681 43.478 0.00 0.00 0.00 2.69
118 119 2.887783 AGACTCTCGCTCTCTTTGTGAA 59.112 45.455 0.00 0.00 0.00 3.18
119 120 2.227626 CAGACTCTCGCTCTCTTTGTGA 59.772 50.000 0.00 0.00 0.00 3.58
121 122 2.030363 CACAGACTCTCGCTCTCTTTGT 60.030 50.000 0.00 0.00 0.00 2.83
123 124 1.067915 GCACAGACTCTCGCTCTCTTT 60.068 52.381 0.00 0.00 0.00 2.52
124 125 0.525761 GCACAGACTCTCGCTCTCTT 59.474 55.000 0.00 0.00 0.00 2.85
125 126 0.322456 AGCACAGACTCTCGCTCTCT 60.322 55.000 0.00 0.00 0.00 3.10
128 129 0.242286 TGAAGCACAGACTCTCGCTC 59.758 55.000 0.85 0.00 32.37 5.03
129 130 2.345565 TGAAGCACAGACTCTCGCT 58.654 52.632 0.00 0.00 35.90 4.93
140 141 4.815269 TCTCTCTTTTCTAGCTGAAGCAC 58.185 43.478 4.90 0.00 45.16 4.40
141 142 5.474578 TTCTCTCTTTTCTAGCTGAAGCA 57.525 39.130 4.90 0.00 45.16 3.91
143 144 8.782144 ACATTTTTCTCTCTTTTCTAGCTGAAG 58.218 33.333 0.00 0.00 35.89 3.02
144 145 8.562892 CACATTTTTCTCTCTTTTCTAGCTGAA 58.437 33.333 0.00 0.00 0.00 3.02
145 146 7.716998 ACACATTTTTCTCTCTTTTCTAGCTGA 59.283 33.333 0.00 0.00 0.00 4.26
147 148 7.936301 AGACACATTTTTCTCTCTTTTCTAGCT 59.064 33.333 0.00 0.00 0.00 3.32
148 149 8.093659 AGACACATTTTTCTCTCTTTTCTAGC 57.906 34.615 0.00 0.00 0.00 3.42
174 175 5.175859 CGGCTTCTACCATAGTCAGAAAAA 58.824 41.667 0.00 0.00 0.00 1.94
175 176 4.755411 CGGCTTCTACCATAGTCAGAAAA 58.245 43.478 0.00 0.00 0.00 2.29
176 177 3.430374 GCGGCTTCTACCATAGTCAGAAA 60.430 47.826 0.00 0.00 0.00 2.52
179 180 1.409064 TGCGGCTTCTACCATAGTCAG 59.591 52.381 0.00 0.00 0.00 3.51
180 181 1.136305 GTGCGGCTTCTACCATAGTCA 59.864 52.381 0.00 0.00 0.00 3.41
181 182 1.136305 TGTGCGGCTTCTACCATAGTC 59.864 52.381 0.00 0.00 0.00 2.59
182 183 1.137086 CTGTGCGGCTTCTACCATAGT 59.863 52.381 0.00 0.00 0.00 2.12
183 184 1.137086 ACTGTGCGGCTTCTACCATAG 59.863 52.381 0.00 0.00 0.00 2.23
184 185 1.134818 CACTGTGCGGCTTCTACCATA 60.135 52.381 0.00 0.00 0.00 2.74
187 188 0.108138 ATCACTGTGCGGCTTCTACC 60.108 55.000 2.12 0.00 0.00 3.18
188 189 1.726853 AATCACTGTGCGGCTTCTAC 58.273 50.000 2.12 0.00 0.00 2.59
190 191 0.877071 CAAATCACTGTGCGGCTTCT 59.123 50.000 2.12 0.00 0.00 2.85
191 192 0.874390 TCAAATCACTGTGCGGCTTC 59.126 50.000 2.12 0.00 0.00 3.86
194 195 0.593128 AAGTCAAATCACTGTGCGGC 59.407 50.000 2.12 0.00 0.00 6.53
195 196 1.872952 TCAAGTCAAATCACTGTGCGG 59.127 47.619 2.12 0.00 0.00 5.69
197 198 5.565259 CGTATTTCAAGTCAAATCACTGTGC 59.435 40.000 2.12 0.00 0.00 4.57
199 200 6.861065 ACGTATTTCAAGTCAAATCACTGT 57.139 33.333 0.00 0.00 0.00 3.55
203 204 7.442969 ACCTTGTACGTATTTCAAGTCAAATCA 59.557 33.333 17.97 0.00 37.45 2.57
204 205 7.744715 CACCTTGTACGTATTTCAAGTCAAATC 59.255 37.037 17.97 0.00 37.45 2.17
205 206 7.442969 TCACCTTGTACGTATTTCAAGTCAAAT 59.557 33.333 17.97 2.25 37.45 2.32
207 208 6.282167 TCACCTTGTACGTATTTCAAGTCAA 58.718 36.000 17.97 7.08 37.45 3.18
210 211 7.581476 CATTTCACCTTGTACGTATTTCAAGT 58.419 34.615 17.97 7.97 37.45 3.16
211 212 6.523201 GCATTTCACCTTGTACGTATTTCAAG 59.477 38.462 14.40 14.40 38.45 3.02
213 214 5.390040 CGCATTTCACCTTGTACGTATTTCA 60.390 40.000 0.00 0.00 0.00 2.69
215 216 4.670735 GCGCATTTCACCTTGTACGTATTT 60.671 41.667 0.30 0.00 0.00 1.40
216 217 3.181514 GCGCATTTCACCTTGTACGTATT 60.182 43.478 0.30 0.00 0.00 1.89
217 218 2.350498 GCGCATTTCACCTTGTACGTAT 59.650 45.455 0.30 0.00 0.00 3.06
218 219 1.727880 GCGCATTTCACCTTGTACGTA 59.272 47.619 0.30 0.00 0.00 3.57
220 221 0.515127 TGCGCATTTCACCTTGTACG 59.485 50.000 5.66 0.00 0.00 3.67
221 222 2.697431 TTGCGCATTTCACCTTGTAC 57.303 45.000 12.75 0.00 0.00 2.90
222 223 3.753797 TGTATTGCGCATTTCACCTTGTA 59.246 39.130 12.75 0.00 0.00 2.41
234 235 9.691362 CCACTGTATATATATATGTATTGCGCA 57.309 33.333 5.66 5.66 0.00 6.09
244 245 9.090103 CGATTGGGGTCCACTGTATATATATAT 57.910 37.037 10.10 10.10 30.78 0.86
246 247 6.183360 GCGATTGGGGTCCACTGTATATATAT 60.183 42.308 0.00 0.00 30.78 0.86
247 248 5.128171 GCGATTGGGGTCCACTGTATATATA 59.872 44.000 0.00 0.00 30.78 0.86
248 249 4.081087 GCGATTGGGGTCCACTGTATATAT 60.081 45.833 0.00 0.00 30.78 0.86
250 251 2.038557 GCGATTGGGGTCCACTGTATAT 59.961 50.000 0.00 0.00 30.78 0.86
253 254 1.195442 TGCGATTGGGGTCCACTGTA 61.195 55.000 0.00 0.00 30.78 2.74
254 255 2.351276 GCGATTGGGGTCCACTGT 59.649 61.111 0.00 0.00 30.78 3.55
255 256 2.040544 GTGCGATTGGGGTCCACTG 61.041 63.158 0.00 0.00 30.78 3.66
256 257 2.351276 GTGCGATTGGGGTCCACT 59.649 61.111 0.00 0.00 30.78 4.00
258 259 1.561769 ATCTGTGCGATTGGGGTCCA 61.562 55.000 0.00 0.00 0.00 4.02
259 260 0.815615 GATCTGTGCGATTGGGGTCC 60.816 60.000 0.00 0.00 30.84 4.46
260 261 0.179000 AGATCTGTGCGATTGGGGTC 59.821 55.000 0.00 0.00 30.84 4.46
262 263 2.103094 TCTAAGATCTGTGCGATTGGGG 59.897 50.000 0.00 0.00 30.84 4.96
267 268 6.577103 TCATTTTCTCTAAGATCTGTGCGAT 58.423 36.000 0.00 0.00 34.25 4.58
268 269 5.965922 TCATTTTCTCTAAGATCTGTGCGA 58.034 37.500 0.00 0.00 0.00 5.10
269 270 6.653273 TTCATTTTCTCTAAGATCTGTGCG 57.347 37.500 0.00 0.00 0.00 5.34
282 283 9.727627 GGTACATCTTTCATCATTCATTTTCTC 57.272 33.333 0.00 0.00 0.00 2.87
283 284 8.400947 CGGTACATCTTTCATCATTCATTTTCT 58.599 33.333 0.00 0.00 0.00 2.52
284 285 8.397906 TCGGTACATCTTTCATCATTCATTTTC 58.602 33.333 0.00 0.00 0.00 2.29
286 287 7.864108 TCGGTACATCTTTCATCATTCATTT 57.136 32.000 0.00 0.00 0.00 2.32
287 288 9.212641 CTATCGGTACATCTTTCATCATTCATT 57.787 33.333 0.00 0.00 0.00 2.57
288 289 7.821359 CCTATCGGTACATCTTTCATCATTCAT 59.179 37.037 0.00 0.00 0.00 2.57
290 291 7.155328 ACCTATCGGTACATCTTTCATCATTC 58.845 38.462 0.00 0.00 43.29 2.67
291 292 7.067496 ACCTATCGGTACATCTTTCATCATT 57.933 36.000 0.00 0.00 43.29 2.57
292 293 6.672266 ACCTATCGGTACATCTTTCATCAT 57.328 37.500 0.00 0.00 43.29 2.45
316 317 0.608035 CTGGGGTGCACGGTAACATT 60.608 55.000 11.45 0.00 0.00 2.71
317 318 1.002624 CTGGGGTGCACGGTAACAT 60.003 57.895 11.45 0.00 0.00 2.71
320 321 1.122632 TTCTCTGGGGTGCACGGTAA 61.123 55.000 11.45 0.00 0.00 2.85
322 323 1.990160 TTTTCTCTGGGGTGCACGGT 61.990 55.000 11.45 0.00 0.00 4.83
418 419 2.601367 CCCACTTGGCCACTTGGG 60.601 66.667 28.96 28.96 42.92 4.12
471 472 2.159028 GCCGAGCTACTCCAAATCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
621 622 2.863740 GGTGTAAAAAGTTTGCTGCCAC 59.136 45.455 0.00 0.00 0.00 5.01
625 626 4.032786 GCTGTTGGTGTAAAAAGTTTGCTG 59.967 41.667 0.00 0.00 0.00 4.41
626 627 4.180817 GCTGTTGGTGTAAAAAGTTTGCT 58.819 39.130 0.00 0.00 0.00 3.91
627 628 3.308595 GGCTGTTGGTGTAAAAAGTTTGC 59.691 43.478 0.00 0.00 0.00 3.68
628 629 4.328712 GTGGCTGTTGGTGTAAAAAGTTTG 59.671 41.667 0.00 0.00 0.00 2.93
629 630 4.021016 TGTGGCTGTTGGTGTAAAAAGTTT 60.021 37.500 0.00 0.00 0.00 2.66
630 631 3.511934 TGTGGCTGTTGGTGTAAAAAGTT 59.488 39.130 0.00 0.00 0.00 2.66
631 632 3.093057 TGTGGCTGTTGGTGTAAAAAGT 58.907 40.909 0.00 0.00 0.00 2.66
632 633 3.705604 CTGTGGCTGTTGGTGTAAAAAG 58.294 45.455 0.00 0.00 0.00 2.27
633 634 2.159170 GCTGTGGCTGTTGGTGTAAAAA 60.159 45.455 0.00 0.00 35.22 1.94
637 638 1.228124 GGCTGTGGCTGTTGGTGTA 60.228 57.895 0.00 0.00 38.73 2.90
641 642 2.519063 TGTGGCTGTGGCTGTTGG 60.519 61.111 0.00 0.00 38.73 3.77
642 643 3.036577 CTGTGGCTGTGGCTGTTG 58.963 61.111 0.00 0.00 38.73 3.33
643 644 2.908940 GCTGTGGCTGTGGCTGTT 60.909 61.111 0.00 0.00 38.73 3.16
649 650 2.591429 TCGTTGGCTGTGGCTGTG 60.591 61.111 0.00 0.00 38.73 3.66
712 733 1.674057 CCAGGCAGGAAAGTCTCGT 59.326 57.895 0.00 0.00 41.22 4.18
764 785 2.942710 TCTTCGGTGATGTCGTCTTTC 58.057 47.619 0.00 0.00 0.00 2.62
815 836 2.432444 CAAACCTCTATCGTGGGCAAA 58.568 47.619 0.00 0.00 0.00 3.68
826 847 5.250543 TCATTCTGATCCAACCAAACCTCTA 59.749 40.000 0.00 0.00 0.00 2.43
829 850 4.338879 CTCATTCTGATCCAACCAAACCT 58.661 43.478 0.00 0.00 0.00 3.50
856 882 1.197721 GCATGACAAGTTGAGAACGGG 59.802 52.381 10.54 0.00 36.23 5.28
979 6089 4.177537 TGTGGAAGGAATTTCTTGGTGA 57.822 40.909 2.93 0.00 36.03 4.02
1036 6146 1.205893 GCTGGTCGGAGAGATCAAAGT 59.794 52.381 0.00 0.00 39.92 2.66
1078 6188 2.741055 GGAGCTGGAGAAGGGAGCC 61.741 68.421 0.00 0.00 32.86 4.70
1187 6297 3.615592 CGAAACATCGGTGACCTTCCTAA 60.616 47.826 0.65 0.00 0.00 2.69
1290 6400 1.812686 AAGTGCCGGACAGCGAGTTA 61.813 55.000 5.05 0.00 34.65 2.24
1306 6416 1.898574 CCAACTCCAGCGGCAAAGT 60.899 57.895 1.45 0.00 0.00 2.66
1308 6418 2.192861 CACCAACTCCAGCGGCAAA 61.193 57.895 1.45 0.00 0.00 3.68
1412 6522 0.610687 GTTGAGTACCTGCAGAGGCT 59.389 55.000 17.39 9.46 44.33 4.58
1613 6723 0.393808 GCAATTACCGAGCCCTGGAA 60.394 55.000 0.00 0.00 0.00 3.53
1672 6782 1.811266 CGCGTGGAAGAGTCCCATG 60.811 63.158 0.00 3.84 44.23 3.66
1687 6797 0.368227 GTGACATTGAAGAGCTCGCG 59.632 55.000 8.37 0.00 0.00 5.87
1762 6873 2.159517 CCAGATTTGTTAGCTTGCCGAC 60.160 50.000 0.00 0.00 0.00 4.79
2070 7181 0.747255 ATAGCCGTAGTGCAGTCAGG 59.253 55.000 0.00 3.89 0.00 3.86
2157 7268 5.924475 TTGTAAGAGAGTTGTTAGCAAGC 57.076 39.130 0.00 0.00 34.94 4.01
2990 8120 5.979517 GCAAAGATAACCTCATTACCAATGC 59.020 40.000 0.00 0.00 38.77 3.56
3152 8288 4.730487 GCAGGAGCCACTGACATT 57.270 55.556 9.25 0.00 40.97 2.71
3200 8336 5.854010 TTGAATGCCTAACTCGAGATACT 57.146 39.130 21.68 2.88 0.00 2.12
3258 8396 5.582665 GGTCACACACTCTTGATATTTCCTC 59.417 44.000 0.00 0.00 0.00 3.71
3398 8536 4.989279 ATTTCTCATGGTTGTATGGTGC 57.011 40.909 0.00 0.00 0.00 5.01
3401 8539 5.722263 TGCAAATTTCTCATGGTTGTATGG 58.278 37.500 0.00 0.00 0.00 2.74
3451 8590 4.830046 TGCCAGTCTGCTTTATTGGTTAAA 59.170 37.500 0.00 0.00 0.00 1.52
3461 8601 6.003950 TCTAATTAACTTGCCAGTCTGCTTT 58.996 36.000 0.00 0.00 30.45 3.51
3490 8630 7.415541 CGTCCTGTTTTGTCCATGATGAATTAT 60.416 37.037 0.00 0.00 0.00 1.28
3514 8654 4.765856 ACTGTATCGCTATTAGGATTCCGT 59.234 41.667 0.00 0.00 0.00 4.69
3515 8655 5.312120 ACTGTATCGCTATTAGGATTCCG 57.688 43.478 0.00 0.00 0.00 4.30
3520 8660 3.639561 TGGCAACTGTATCGCTATTAGGA 59.360 43.478 0.00 0.00 37.61 2.94
3525 8665 5.011125 AGTTAGATGGCAACTGTATCGCTAT 59.989 40.000 7.62 0.00 34.96 2.97
3526 8666 4.341235 AGTTAGATGGCAACTGTATCGCTA 59.659 41.667 7.62 0.00 34.96 4.26
3528 8668 3.458189 AGTTAGATGGCAACTGTATCGC 58.542 45.455 7.62 0.00 34.96 4.58
3530 8671 5.023533 TGGAGTTAGATGGCAACTGTATC 57.976 43.478 7.62 2.44 36.38 2.24
3537 8678 4.922206 ACTTGATTGGAGTTAGATGGCAA 58.078 39.130 0.00 0.00 0.00 4.52
3545 8686 4.202020 CGATCCTCGACTTGATTGGAGTTA 60.202 45.833 0.00 0.00 43.74 2.24
3551 8692 1.857217 CTGCGATCCTCGACTTGATTG 59.143 52.381 0.00 0.00 43.74 2.67
3554 8695 0.888619 AACTGCGATCCTCGACTTGA 59.111 50.000 0.00 0.00 43.74 3.02
3555 8696 1.135257 AGAACTGCGATCCTCGACTTG 60.135 52.381 0.00 0.00 43.74 3.16
3557 8698 0.736053 GAGAACTGCGATCCTCGACT 59.264 55.000 0.00 0.00 43.74 4.18
3558 8699 0.248702 GGAGAACTGCGATCCTCGAC 60.249 60.000 0.00 0.00 43.74 4.20
3559 8700 0.679960 TGGAGAACTGCGATCCTCGA 60.680 55.000 0.00 0.00 43.74 4.04
3560 8701 0.526524 GTGGAGAACTGCGATCCTCG 60.527 60.000 0.00 0.00 43.89 4.63
3561 8702 0.532573 TGTGGAGAACTGCGATCCTC 59.467 55.000 0.00 0.00 34.04 3.71
3562 8703 0.534412 CTGTGGAGAACTGCGATCCT 59.466 55.000 0.00 0.00 34.04 3.24
3563 8704 1.086634 GCTGTGGAGAACTGCGATCC 61.087 60.000 0.00 0.00 42.85 3.36
3564 8705 2.378028 GCTGTGGAGAACTGCGATC 58.622 57.895 0.00 0.00 42.85 3.69
3565 8706 4.606071 GCTGTGGAGAACTGCGAT 57.394 55.556 0.00 0.00 42.85 4.58
3569 8710 2.423185 TGTTGTTTGCTGTGGAGAACTG 59.577 45.455 0.00 0.00 0.00 3.16
3570 8711 2.722094 TGTTGTTTGCTGTGGAGAACT 58.278 42.857 0.00 0.00 0.00 3.01
3571 8712 3.438360 CTTGTTGTTTGCTGTGGAGAAC 58.562 45.455 0.00 0.00 0.00 3.01
3572 8713 2.159254 GCTTGTTGTTTGCTGTGGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
3573 8714 1.405105 GCTTGTTGTTTGCTGTGGAGA 59.595 47.619 0.00 0.00 0.00 3.71
3574 8715 1.843992 GCTTGTTGTTTGCTGTGGAG 58.156 50.000 0.00 0.00 0.00 3.86
3575 8716 0.100325 CGCTTGTTGTTTGCTGTGGA 59.900 50.000 0.00 0.00 0.00 4.02
3576 8717 1.481819 GCGCTTGTTGTTTGCTGTGG 61.482 55.000 0.00 0.00 0.00 4.17
3577 8718 0.526096 AGCGCTTGTTGTTTGCTGTG 60.526 50.000 2.64 0.00 33.99 3.66
3578 8719 0.526096 CAGCGCTTGTTGTTTGCTGT 60.526 50.000 7.50 0.00 45.96 4.40
3579 8720 2.209872 CAGCGCTTGTTGTTTGCTG 58.790 52.632 7.50 0.00 45.88 4.41
3580 8721 0.029834 CTCAGCGCTTGTTGTTTGCT 59.970 50.000 7.50 0.00 36.05 3.91
3581 8722 0.029300 TCTCAGCGCTTGTTGTTTGC 59.971 50.000 7.50 0.00 0.00 3.68
3582 8723 1.599071 TCTCTCAGCGCTTGTTGTTTG 59.401 47.619 7.50 0.00 0.00 2.93
3583 8724 1.953559 TCTCTCAGCGCTTGTTGTTT 58.046 45.000 7.50 0.00 0.00 2.83
3584 8725 1.953559 TTCTCTCAGCGCTTGTTGTT 58.046 45.000 7.50 0.00 0.00 2.83
3585 8726 2.175878 ATTCTCTCAGCGCTTGTTGT 57.824 45.000 7.50 0.00 0.00 3.32
3586 8727 4.871993 AATATTCTCTCAGCGCTTGTTG 57.128 40.909 7.50 0.00 0.00 3.33
3587 8728 4.937620 TGAAATATTCTCTCAGCGCTTGTT 59.062 37.500 7.50 0.00 0.00 2.83
3588 8729 4.507710 TGAAATATTCTCTCAGCGCTTGT 58.492 39.130 7.50 0.00 0.00 3.16
3589 8730 4.807834 TCTGAAATATTCTCTCAGCGCTTG 59.192 41.667 7.50 3.52 37.17 4.01
3590 8731 5.016051 TCTGAAATATTCTCTCAGCGCTT 57.984 39.130 7.50 0.00 37.17 4.68
3591 8732 4.662468 TCTGAAATATTCTCTCAGCGCT 57.338 40.909 2.64 2.64 37.17 5.92
3592 8733 5.725110 TTTCTGAAATATTCTCTCAGCGC 57.275 39.130 0.00 0.00 37.17 5.92
3593 8734 7.244166 ACATTTCTGAAATATTCTCTCAGCG 57.756 36.000 14.78 2.03 37.17 5.18
3594 8735 9.102757 TGTACATTTCTGAAATATTCTCTCAGC 57.897 33.333 14.78 0.00 37.17 4.26
3596 8737 9.087424 CGTGTACATTTCTGAAATATTCTCTCA 57.913 33.333 14.78 5.98 0.00 3.27
3597 8738 9.302345 TCGTGTACATTTCTGAAATATTCTCTC 57.698 33.333 14.78 5.57 0.00 3.20
3598 8739 9.653287 TTCGTGTACATTTCTGAAATATTCTCT 57.347 29.630 14.78 0.00 0.00 3.10
3599 8740 9.907576 CTTCGTGTACATTTCTGAAATATTCTC 57.092 33.333 14.78 3.26 0.00 2.87
3600 8741 9.436957 ACTTCGTGTACATTTCTGAAATATTCT 57.563 29.630 14.78 2.15 0.00 2.40
3604 8745 8.641155 CGTAACTTCGTGTACATTTCTGAAATA 58.359 33.333 14.78 0.00 0.00 1.40
3605 8746 7.383029 TCGTAACTTCGTGTACATTTCTGAAAT 59.617 33.333 9.76 9.76 0.00 2.17
3606 8747 6.696583 TCGTAACTTCGTGTACATTTCTGAAA 59.303 34.615 5.15 5.15 0.00 2.69
3607 8748 6.207928 TCGTAACTTCGTGTACATTTCTGAA 58.792 36.000 0.00 0.00 0.00 3.02
3608 8749 5.761003 TCGTAACTTCGTGTACATTTCTGA 58.239 37.500 0.00 0.00 0.00 3.27
3609 8750 6.442487 TTCGTAACTTCGTGTACATTTCTG 57.558 37.500 0.00 0.00 0.00 3.02
3610 8751 6.476380 TGTTTCGTAACTTCGTGTACATTTCT 59.524 34.615 0.00 0.00 35.24 2.52
3611 8752 6.639212 TGTTTCGTAACTTCGTGTACATTTC 58.361 36.000 0.00 0.00 35.24 2.17
3612 8753 6.476380 TCTGTTTCGTAACTTCGTGTACATTT 59.524 34.615 0.00 0.00 35.24 2.32
3613 8754 5.978919 TCTGTTTCGTAACTTCGTGTACATT 59.021 36.000 0.00 0.00 35.24 2.71
3614 8755 5.522456 TCTGTTTCGTAACTTCGTGTACAT 58.478 37.500 0.00 0.00 35.24 2.29
3615 8756 4.919206 TCTGTTTCGTAACTTCGTGTACA 58.081 39.130 6.48 0.00 35.24 2.90
3616 8757 5.207768 TCTCTGTTTCGTAACTTCGTGTAC 58.792 41.667 6.48 0.00 35.24 2.90
3617 8758 5.422666 TCTCTGTTTCGTAACTTCGTGTA 57.577 39.130 6.48 0.00 35.24 2.90
3618 8759 4.297299 TCTCTGTTTCGTAACTTCGTGT 57.703 40.909 6.48 0.00 35.24 4.49
3619 8760 4.433022 GCATCTCTGTTTCGTAACTTCGTG 60.433 45.833 6.48 1.28 35.24 4.35
3620 8761 3.673809 GCATCTCTGTTTCGTAACTTCGT 59.326 43.478 6.48 0.00 35.24 3.85
3621 8762 3.921021 AGCATCTCTGTTTCGTAACTTCG 59.079 43.478 6.48 0.00 35.24 3.79
3622 8763 4.030753 CGAGCATCTCTGTTTCGTAACTTC 59.969 45.833 6.48 0.00 35.24 3.01
3623 8764 3.921021 CGAGCATCTCTGTTTCGTAACTT 59.079 43.478 6.48 0.00 35.24 2.66
3624 8765 3.190744 TCGAGCATCTCTGTTTCGTAACT 59.809 43.478 6.48 0.00 34.96 2.24
3625 8766 3.499048 TCGAGCATCTCTGTTTCGTAAC 58.501 45.455 0.00 0.00 34.96 2.50
3626 8767 3.842732 TCGAGCATCTCTGTTTCGTAA 57.157 42.857 0.00 0.00 34.96 3.18
3627 8768 3.842732 TTCGAGCATCTCTGTTTCGTA 57.157 42.857 0.00 0.00 34.96 3.43
3628 8769 2.724977 TTCGAGCATCTCTGTTTCGT 57.275 45.000 0.00 0.00 34.96 3.85
3629 8770 3.242220 CCAATTCGAGCATCTCTGTTTCG 60.242 47.826 0.00 0.00 34.81 3.46
3630 8771 3.686726 ACCAATTCGAGCATCTCTGTTTC 59.313 43.478 0.00 0.00 0.00 2.78
3631 8772 3.679389 ACCAATTCGAGCATCTCTGTTT 58.321 40.909 0.00 0.00 0.00 2.83
3632 8773 3.340814 ACCAATTCGAGCATCTCTGTT 57.659 42.857 0.00 0.00 0.00 3.16
3633 8774 3.449018 AGTACCAATTCGAGCATCTCTGT 59.551 43.478 0.00 0.00 0.00 3.41
3634 8775 4.052159 AGTACCAATTCGAGCATCTCTG 57.948 45.455 0.00 0.00 0.00 3.35
3635 8776 4.645136 TGTAGTACCAATTCGAGCATCTCT 59.355 41.667 0.00 0.00 0.00 3.10
3636 8777 4.933330 TGTAGTACCAATTCGAGCATCTC 58.067 43.478 0.00 0.00 0.00 2.75
3637 8778 5.339008 TTGTAGTACCAATTCGAGCATCT 57.661 39.130 0.00 0.00 0.00 2.90
3638 8779 5.523916 ACATTGTAGTACCAATTCGAGCATC 59.476 40.000 0.00 0.00 32.81 3.91
3639 8780 5.428253 ACATTGTAGTACCAATTCGAGCAT 58.572 37.500 0.00 0.00 32.81 3.79
3640 8781 4.827692 ACATTGTAGTACCAATTCGAGCA 58.172 39.130 0.00 0.00 32.81 4.26
3641 8782 5.560148 CAACATTGTAGTACCAATTCGAGC 58.440 41.667 0.00 0.00 32.81 5.03
3642 8783 5.121611 TGCAACATTGTAGTACCAATTCGAG 59.878 40.000 0.00 0.00 32.81 4.04
3643 8784 4.998033 TGCAACATTGTAGTACCAATTCGA 59.002 37.500 0.00 0.00 32.81 3.71
3644 8785 5.086058 GTGCAACATTGTAGTACCAATTCG 58.914 41.667 0.00 0.00 36.32 3.34
3645 8786 5.086058 CGTGCAACATTGTAGTACCAATTC 58.914 41.667 0.00 0.00 35.74 2.17
3646 8787 4.757657 TCGTGCAACATTGTAGTACCAATT 59.242 37.500 0.00 0.00 35.74 2.32
3647 8788 4.320023 TCGTGCAACATTGTAGTACCAAT 58.680 39.130 0.00 0.00 35.74 3.16
3648 8789 3.729966 TCGTGCAACATTGTAGTACCAA 58.270 40.909 0.00 0.00 35.74 3.67
3649 8790 3.388345 TCGTGCAACATTGTAGTACCA 57.612 42.857 0.00 0.00 35.74 3.25
3650 8791 4.939509 ATTCGTGCAACATTGTAGTACC 57.060 40.909 0.00 0.00 35.74 3.34
3651 8792 6.464834 GCTTAATTCGTGCAACATTGTAGTAC 59.535 38.462 0.00 0.00 35.74 2.73
3652 8793 6.147985 TGCTTAATTCGTGCAACATTGTAGTA 59.852 34.615 0.00 0.00 35.74 1.82
3653 8794 5.049060 TGCTTAATTCGTGCAACATTGTAGT 60.049 36.000 0.00 0.00 35.74 2.73
3654 8795 5.389778 TGCTTAATTCGTGCAACATTGTAG 58.610 37.500 0.00 0.00 35.74 2.74
3655 8796 5.363979 TGCTTAATTCGTGCAACATTGTA 57.636 34.783 0.00 0.00 35.74 2.41
3656 8797 4.229096 CTGCTTAATTCGTGCAACATTGT 58.771 39.130 0.00 0.00 35.74 2.71
3657 8798 3.059834 GCTGCTTAATTCGTGCAACATTG 59.940 43.478 0.00 0.00 35.74 2.82
3658 8799 3.057315 AGCTGCTTAATTCGTGCAACATT 60.057 39.130 0.00 0.00 35.74 2.71
3659 8800 2.489329 AGCTGCTTAATTCGTGCAACAT 59.511 40.909 0.00 0.00 35.74 2.71
3660 8801 1.879380 AGCTGCTTAATTCGTGCAACA 59.121 42.857 0.00 0.00 35.74 3.33
3661 8802 2.245096 CAGCTGCTTAATTCGTGCAAC 58.755 47.619 0.00 0.00 36.22 4.17
3662 8803 1.401409 GCAGCTGCTTAATTCGTGCAA 60.401 47.619 31.33 0.00 36.22 4.08
3663 8804 0.168788 GCAGCTGCTTAATTCGTGCA 59.831 50.000 31.33 0.00 38.21 4.57
3664 8805 2.935651 GCAGCTGCTTAATTCGTGC 58.064 52.632 31.33 0.18 38.21 5.34
3675 8816 1.136147 CAAATCACGGAGCAGCTGC 59.864 57.895 31.53 31.53 42.49 5.25
3676 8817 1.136147 GCAAATCACGGAGCAGCTG 59.864 57.895 10.11 10.11 0.00 4.24
3677 8818 1.302752 TGCAAATCACGGAGCAGCT 60.303 52.632 0.00 0.00 32.48 4.24
3678 8819 1.154150 GTGCAAATCACGGAGCAGC 60.154 57.895 0.00 0.00 37.72 5.25
3686 8827 5.284660 CGAATTAAGCTCTTGTGCAAATCAC 59.715 40.000 0.00 0.00 45.82 3.06
3687 8828 5.181056 TCGAATTAAGCTCTTGTGCAAATCA 59.819 36.000 0.00 0.00 34.99 2.57
3688 8829 5.631026 TCGAATTAAGCTCTTGTGCAAATC 58.369 37.500 0.00 0.00 34.99 2.17
3689 8830 5.392380 CCTCGAATTAAGCTCTTGTGCAAAT 60.392 40.000 0.00 0.00 34.99 2.32
3690 8831 4.083324 CCTCGAATTAAGCTCTTGTGCAAA 60.083 41.667 0.00 0.00 34.99 3.68
3691 8832 3.436704 CCTCGAATTAAGCTCTTGTGCAA 59.563 43.478 0.00 0.00 34.99 4.08
3692 8833 3.002791 CCTCGAATTAAGCTCTTGTGCA 58.997 45.455 0.00 0.00 34.99 4.57
3693 8834 2.223135 GCCTCGAATTAAGCTCTTGTGC 60.223 50.000 0.00 0.00 0.00 4.57
3694 8835 3.002791 TGCCTCGAATTAAGCTCTTGTG 58.997 45.455 0.00 0.00 0.00 3.33
3695 8836 3.334583 TGCCTCGAATTAAGCTCTTGT 57.665 42.857 0.00 0.00 0.00 3.16
3696 8837 4.889832 AATGCCTCGAATTAAGCTCTTG 57.110 40.909 0.00 0.00 0.00 3.02
3697 8838 5.880332 TGTAAATGCCTCGAATTAAGCTCTT 59.120 36.000 0.00 0.00 0.00 2.85
3698 8839 5.428253 TGTAAATGCCTCGAATTAAGCTCT 58.572 37.500 0.00 0.00 0.00 4.09
3699 8840 5.734855 TGTAAATGCCTCGAATTAAGCTC 57.265 39.130 0.00 0.00 0.00 4.09
3700 8841 4.035675 GCTGTAAATGCCTCGAATTAAGCT 59.964 41.667 0.00 0.00 0.00 3.74
3701 8842 4.282873 GCTGTAAATGCCTCGAATTAAGC 58.717 43.478 0.00 0.00 0.00 3.09
3702 8843 4.848757 GGCTGTAAATGCCTCGAATTAAG 58.151 43.478 0.00 0.00 46.38 1.85
3703 8844 4.893424 GGCTGTAAATGCCTCGAATTAA 57.107 40.909 0.00 0.00 46.38 1.40
3712 8853 1.377987 TCACCCGGCTGTAAATGCC 60.378 57.895 0.00 0.00 46.42 4.40
3713 8854 0.958382 TGTCACCCGGCTGTAAATGC 60.958 55.000 0.00 0.00 0.00 3.56
3714 8855 1.086696 CTGTCACCCGGCTGTAAATG 58.913 55.000 0.00 0.00 0.00 2.32
3715 8856 0.035439 CCTGTCACCCGGCTGTAAAT 60.035 55.000 0.00 0.00 0.00 1.40
3716 8857 1.122632 TCCTGTCACCCGGCTGTAAA 61.123 55.000 0.00 0.00 0.00 2.01
3717 8858 1.534476 TCCTGTCACCCGGCTGTAA 60.534 57.895 0.00 0.00 0.00 2.41
3718 8859 2.118732 TCCTGTCACCCGGCTGTA 59.881 61.111 0.00 0.00 0.00 2.74
3719 8860 3.626924 GTCCTGTCACCCGGCTGT 61.627 66.667 0.00 0.00 0.00 4.40
3720 8861 4.742201 CGTCCTGTCACCCGGCTG 62.742 72.222 0.00 0.00 0.00 4.85
3725 8866 4.699522 GGGCACGTCCTGTCACCC 62.700 72.222 0.00 0.00 36.95 4.61
3726 8867 3.936203 TGGGCACGTCCTGTCACC 61.936 66.667 0.00 0.00 34.39 4.02
3727 8868 2.665185 GTGGGCACGTCCTGTCAC 60.665 66.667 0.00 0.00 34.39 3.67
3728 8869 2.842462 AGTGGGCACGTCCTGTCA 60.842 61.111 0.00 0.00 36.20 3.58
3729 8870 2.357517 CAGTGGGCACGTCCTGTC 60.358 66.667 0.00 0.00 36.20 3.51
3730 8871 3.941188 CCAGTGGGCACGTCCTGT 61.941 66.667 0.00 0.00 36.20 4.00
3740 8881 2.033141 CTGACACAGGCCAGTGGG 59.967 66.667 29.40 12.99 43.72 4.61
3741 8882 2.670934 GCTGACACAGGCCAGTGG 60.671 66.667 29.40 14.71 43.72 4.00
3748 8889 2.667418 CAGGAGGGCTGACACAGG 59.333 66.667 0.00 0.00 31.21 4.00
3749 8890 2.046507 GCAGGAGGGCTGACACAG 60.047 66.667 0.00 0.00 34.12 3.66
3750 8891 3.640407 GGCAGGAGGGCTGACACA 61.640 66.667 0.00 0.00 39.42 3.72
3759 8900 4.106925 GACCAGGCAGGCAGGAGG 62.107 72.222 12.93 2.91 43.14 4.30
3760 8901 3.007920 AGACCAGGCAGGCAGGAG 61.008 66.667 12.93 0.00 43.14 3.69
3761 8902 3.005539 GAGACCAGGCAGGCAGGA 61.006 66.667 12.93 0.00 43.14 3.86
3762 8903 4.106925 GGAGACCAGGCAGGCAGG 62.107 72.222 3.51 3.51 43.14 4.85
3763 8904 4.463879 CGGAGACCAGGCAGGCAG 62.464 72.222 0.00 0.00 43.14 4.85
3772 8913 0.179111 GCATCGTTGATCGGAGACCA 60.179 55.000 0.00 0.00 42.51 4.02
3773 8914 0.103208 AGCATCGTTGATCGGAGACC 59.897 55.000 0.00 0.00 42.51 3.85
3781 8922 2.176273 GCGCTCCAGCATCGTTGAT 61.176 57.895 0.00 0.00 42.21 2.57
3782 8923 2.815211 GCGCTCCAGCATCGTTGA 60.815 61.111 0.00 0.00 42.21 3.18
3874 9015 7.093727 ACACGAAGATGAAGAAGAATCCTCTTA 60.094 37.037 0.00 0.00 42.19 2.10
3878 9019 5.047021 TCACACGAAGATGAAGAAGAATCCT 60.047 40.000 0.00 0.00 0.00 3.24
3886 9027 5.419155 ACTTCCTATCACACGAAGATGAAGA 59.581 40.000 15.80 0.00 37.14 2.87
3903 9044 0.105658 ATAGCTCGGCCCACTTCCTA 60.106 55.000 0.00 0.00 0.00 2.94
3912 9053 2.014068 GCCCATATTCATAGCTCGGCC 61.014 57.143 0.00 0.00 0.00 6.13
3915 9056 2.768253 TGGCCCATATTCATAGCTCG 57.232 50.000 0.00 0.00 0.00 5.03
4027 10960 0.816018 TGTCGGTGTTTCGGCACAAT 60.816 50.000 7.68 0.00 39.98 2.71
4028 10961 1.449778 TGTCGGTGTTTCGGCACAA 60.450 52.632 7.68 0.00 39.98 3.33
4029 10962 2.187163 TGTCGGTGTTTCGGCACA 59.813 55.556 7.68 0.00 39.98 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.