Multiple sequence alignment - TraesCS6D01G116600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G116600 chr6D 100.000 3731 0 0 1 3731 82965210 82961480 0.000000e+00 6890.0
1 TraesCS6D01G116600 chr6D 78.649 1939 390 19 640 2568 81750104 81748180 0.000000e+00 1266.0
2 TraesCS6D01G116600 chr6D 77.315 2160 442 40 473 2609 81926270 81924136 0.000000e+00 1230.0
3 TraesCS6D01G116600 chr6D 77.989 1999 397 34 630 2609 81773804 81771830 0.000000e+00 1214.0
4 TraesCS6D01G116600 chr6D 83.433 1171 180 6 650 1818 81920686 81919528 0.000000e+00 1075.0
5 TraesCS6D01G116600 chr6D 75.115 2166 481 43 473 2609 82220587 82218451 0.000000e+00 961.0
6 TraesCS6D01G116600 chr6D 77.626 1171 221 32 1882 3039 81919048 81917906 0.000000e+00 673.0
7 TraesCS6D01G116600 chr6D 98.333 60 1 0 1 60 82969795 82969736 5.100000e-19 106.0
8 TraesCS6D01G116600 chr6A 92.863 3461 198 29 60 3492 99787439 99784000 0.000000e+00 4977.0
9 TraesCS6D01G116600 chr6A 78.638 1938 394 13 640 2569 98242378 98240453 0.000000e+00 1267.0
10 TraesCS6D01G116600 chr6A 75.762 1246 276 23 1379 2611 98916415 98915183 4.120000e-169 604.0
11 TraesCS6D01G116600 chr6A 93.548 62 2 1 1 62 58860656 58860597 1.430000e-14 91.6
12 TraesCS6D01G116600 chr6A 89.231 65 4 3 1 64 385744172 385744110 1.110000e-10 78.7
13 TraesCS6D01G116600 chr6B 93.658 3138 142 26 381 3492 157780026 157776920 0.000000e+00 4639.0
14 TraesCS6D01G116600 chr6B 93.995 1682 86 11 60 1735 157910966 157912638 0.000000e+00 2532.0
15 TraesCS6D01G116600 chr6B 91.004 1334 98 11 1716 3032 157930704 157932032 0.000000e+00 1779.0
16 TraesCS6D01G116600 chr6B 78.586 1938 395 14 640 2569 156418364 156416439 0.000000e+00 1262.0
17 TraesCS6D01G116600 chr6B 77.119 2159 448 39 473 2609 156654925 156652791 0.000000e+00 1208.0
18 TraesCS6D01G116600 chr6B 75.430 2210 498 39 632 2819 157765862 157763676 0.000000e+00 1031.0
19 TraesCS6D01G116600 chr6B 74.891 2290 524 42 637 2899 158194009 158191744 0.000000e+00 996.0
20 TraesCS6D01G116600 chr6B 74.407 2446 558 47 508 2914 157900247 157902663 0.000000e+00 987.0
21 TraesCS6D01G116600 chr6B 75.445 1629 354 32 648 2261 157790318 157788721 0.000000e+00 750.0
22 TraesCS6D01G116600 chr6B 91.986 287 15 8 60 342 157780299 157780017 2.700000e-106 396.0
23 TraesCS6D01G116600 chr5D 88.067 3000 299 34 60 3039 372060829 372057869 0.000000e+00 3502.0
24 TraesCS6D01G116600 chr5D 95.082 61 1 2 1 61 110877272 110877330 1.100000e-15 95.3
25 TraesCS6D01G116600 chr7A 73.507 2110 491 58 650 2725 645087952 645090027 0.000000e+00 737.0
26 TraesCS6D01G116600 chr7D 73.634 1665 384 43 632 2268 560913325 560914962 3.210000e-165 592.0
27 TraesCS6D01G116600 chr7D 93.333 60 2 2 1 60 127729027 127728970 1.850000e-13 87.9
28 TraesCS6D01G116600 chr7D 91.379 58 3 2 1 58 127712944 127712889 1.110000e-10 78.7
29 TraesCS6D01G116600 chrUn 96.552 58 1 1 5 61 23973856 23973913 1.100000e-15 95.3
30 TraesCS6D01G116600 chr5A 95.082 61 2 1 1 60 352359184 352359244 1.100000e-15 95.3
31 TraesCS6D01G116600 chr2A 94.444 54 3 0 1 54 665984594 665984647 2.390000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G116600 chr6D 82961480 82965210 3730 True 6890.000000 6890 100.000 1 3731 1 chr6D.!!$R4 3730
1 TraesCS6D01G116600 chr6D 81748180 81750104 1924 True 1266.000000 1266 78.649 640 2568 1 chr6D.!!$R1 1928
2 TraesCS6D01G116600 chr6D 81771830 81773804 1974 True 1214.000000 1214 77.989 630 2609 1 chr6D.!!$R2 1979
3 TraesCS6D01G116600 chr6D 81917906 81926270 8364 True 992.666667 1230 79.458 473 3039 3 chr6D.!!$R6 2566
4 TraesCS6D01G116600 chr6D 82218451 82220587 2136 True 961.000000 961 75.115 473 2609 1 chr6D.!!$R3 2136
5 TraesCS6D01G116600 chr6A 99784000 99787439 3439 True 4977.000000 4977 92.863 60 3492 1 chr6A.!!$R4 3432
6 TraesCS6D01G116600 chr6A 98240453 98242378 1925 True 1267.000000 1267 78.638 640 2569 1 chr6A.!!$R2 1929
7 TraesCS6D01G116600 chr6A 98915183 98916415 1232 True 604.000000 604 75.762 1379 2611 1 chr6A.!!$R3 1232
8 TraesCS6D01G116600 chr6B 157910966 157912638 1672 False 2532.000000 2532 93.995 60 1735 1 chr6B.!!$F2 1675
9 TraesCS6D01G116600 chr6B 157776920 157780299 3379 True 2517.500000 4639 92.822 60 3492 2 chr6B.!!$R6 3432
10 TraesCS6D01G116600 chr6B 157930704 157932032 1328 False 1779.000000 1779 91.004 1716 3032 1 chr6B.!!$F3 1316
11 TraesCS6D01G116600 chr6B 156416439 156418364 1925 True 1262.000000 1262 78.586 640 2569 1 chr6B.!!$R1 1929
12 TraesCS6D01G116600 chr6B 156652791 156654925 2134 True 1208.000000 1208 77.119 473 2609 1 chr6B.!!$R2 2136
13 TraesCS6D01G116600 chr6B 157763676 157765862 2186 True 1031.000000 1031 75.430 632 2819 1 chr6B.!!$R3 2187
14 TraesCS6D01G116600 chr6B 158191744 158194009 2265 True 996.000000 996 74.891 637 2899 1 chr6B.!!$R5 2262
15 TraesCS6D01G116600 chr6B 157900247 157902663 2416 False 987.000000 987 74.407 508 2914 1 chr6B.!!$F1 2406
16 TraesCS6D01G116600 chr6B 157788721 157790318 1597 True 750.000000 750 75.445 648 2261 1 chr6B.!!$R4 1613
17 TraesCS6D01G116600 chr5D 372057869 372060829 2960 True 3502.000000 3502 88.067 60 3039 1 chr5D.!!$R1 2979
18 TraesCS6D01G116600 chr7A 645087952 645090027 2075 False 737.000000 737 73.507 650 2725 1 chr7A.!!$F1 2075
19 TraesCS6D01G116600 chr7D 560913325 560914962 1637 False 592.000000 592 73.634 632 2268 1 chr7D.!!$F1 1636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 758 1.202698 GCAGTTCCTCAGTGGTCTGTT 60.203 52.381 13.62 0.0 41.91 3.16 F
812 852 3.083349 CTGTGGCGAGGATGGGGA 61.083 66.667 0.00 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 7221 1.366319 AGGAAGGTGAGGTGCTTCAT 58.634 50.0 0.0 0.0 0.0 2.57 R
2805 8702 0.875059 CCTCGGGAAGCTTGTTTGAC 59.125 55.0 2.1 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.840427 GTACATGTATATATGATGGTTTTTGCC 57.160 33.333 15.59 0.00 0.00 4.52
27 28 8.710749 ACATGTATATATGATGGTTTTTGCCT 57.289 30.769 15.59 0.00 0.00 4.75
28 29 8.796475 ACATGTATATATGATGGTTTTTGCCTC 58.204 33.333 15.59 0.00 0.00 4.70
29 30 7.759489 TGTATATATGATGGTTTTTGCCTCC 57.241 36.000 0.00 0.00 0.00 4.30
30 31 7.526041 TGTATATATGATGGTTTTTGCCTCCT 58.474 34.615 0.00 0.00 0.00 3.69
31 32 6.906157 ATATATGATGGTTTTTGCCTCCTG 57.094 37.500 0.00 0.00 0.00 3.86
32 33 2.673775 TGATGGTTTTTGCCTCCTGA 57.326 45.000 0.00 0.00 0.00 3.86
33 34 3.173953 TGATGGTTTTTGCCTCCTGAT 57.826 42.857 0.00 0.00 0.00 2.90
34 35 4.314522 TGATGGTTTTTGCCTCCTGATA 57.685 40.909 0.00 0.00 0.00 2.15
35 36 4.671831 TGATGGTTTTTGCCTCCTGATAA 58.328 39.130 0.00 0.00 0.00 1.75
36 37 5.271598 TGATGGTTTTTGCCTCCTGATAAT 58.728 37.500 0.00 0.00 0.00 1.28
37 38 6.430864 TGATGGTTTTTGCCTCCTGATAATA 58.569 36.000 0.00 0.00 0.00 0.98
38 39 7.068702 TGATGGTTTTTGCCTCCTGATAATAT 58.931 34.615 0.00 0.00 0.00 1.28
39 40 6.959639 TGGTTTTTGCCTCCTGATAATATC 57.040 37.500 0.00 0.00 0.00 1.63
40 41 6.430864 TGGTTTTTGCCTCCTGATAATATCA 58.569 36.000 2.68 2.68 37.76 2.15
41 42 6.894654 TGGTTTTTGCCTCCTGATAATATCAA 59.105 34.615 4.37 0.00 39.11 2.57
42 43 7.068593 TGGTTTTTGCCTCCTGATAATATCAAG 59.931 37.037 4.37 0.00 39.11 3.02
43 44 7.068716 GGTTTTTGCCTCCTGATAATATCAAGT 59.931 37.037 4.37 0.00 39.11 3.16
44 45 8.470002 GTTTTTGCCTCCTGATAATATCAAGTT 58.530 33.333 4.37 0.00 39.11 2.66
45 46 7.572523 TTTGCCTCCTGATAATATCAAGTTG 57.427 36.000 4.37 0.00 39.11 3.16
46 47 5.065914 TGCCTCCTGATAATATCAAGTTGC 58.934 41.667 4.37 6.46 39.11 4.17
47 48 5.163163 TGCCTCCTGATAATATCAAGTTGCT 60.163 40.000 4.37 0.00 39.11 3.91
48 49 6.043127 TGCCTCCTGATAATATCAAGTTGCTA 59.957 38.462 4.37 0.00 39.11 3.49
49 50 7.108847 GCCTCCTGATAATATCAAGTTGCTAT 58.891 38.462 4.37 0.00 39.11 2.97
50 51 7.609532 GCCTCCTGATAATATCAAGTTGCTATT 59.390 37.037 14.55 14.55 39.11 1.73
51 52 9.512588 CCTCCTGATAATATCAAGTTGCTATTT 57.487 33.333 15.17 5.84 39.11 1.40
83 85 5.757320 ACTATCTTGCTGATCAAATCTTCGG 59.243 40.000 0.00 0.00 36.65 4.30
105 107 2.125461 GCCTTCAGCAACTGTTGTTC 57.875 50.000 20.57 6.26 42.97 3.18
108 110 3.438360 CCTTCAGCAACTGTTGTTCAAC 58.562 45.455 20.57 8.52 33.52 3.18
125 127 9.620660 GTTGTTCAACTCTTTCTCAACTTTTTA 57.379 29.630 8.23 0.00 33.41 1.52
313 322 2.717639 AAGGATTCGGTCAAGGATGG 57.282 50.000 0.00 0.00 0.00 3.51
437 447 2.079925 GTGAACTAAGAAGCTGCTGGG 58.920 52.381 1.35 0.00 0.00 4.45
478 488 6.451393 TCGTTGACCCCAATTTTATTTCTTG 58.549 36.000 0.00 0.00 34.39 3.02
537 547 3.064931 GTCTTACCCAACTACAGCACAC 58.935 50.000 0.00 0.00 0.00 3.82
689 722 3.065655 CAGTTCTTGCACAGAGAAGGAG 58.934 50.000 0.00 0.00 34.05 3.69
725 758 1.202698 GCAGTTCCTCAGTGGTCTGTT 60.203 52.381 13.62 0.00 41.91 3.16
812 852 3.083349 CTGTGGCGAGGATGGGGA 61.083 66.667 0.00 0.00 0.00 4.81
992 6437 3.793144 CAGCTTCAACCGCCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
1067 6518 6.610741 ACTGAACATCTCAAGAAACTTGTC 57.389 37.500 10.56 2.23 32.17 3.18
1487 6944 3.267483 GTGAGCTCGAGAGACTAGAAGT 58.733 50.000 18.75 0.00 35.39 3.01
1762 7221 4.410228 AGCTCTCACCAAGAATAGGCAATA 59.590 41.667 0.00 0.00 32.23 1.90
2348 8229 4.996788 ATTTGAGCTTCAATGCCCTAAG 57.003 40.909 0.00 0.00 36.11 2.18
2381 8262 6.470278 TCCCAATATCAGTATGCAATCTCAG 58.530 40.000 0.00 0.00 34.76 3.35
2392 8273 2.957680 TGCAATCTCAGAAACCTGCAAA 59.042 40.909 2.52 0.00 36.89 3.68
2452 8333 4.469883 CTGCACTGAACAGCCTGT 57.530 55.556 0.00 0.00 0.00 4.00
2619 8505 2.763645 AACACCTCCACCCACCACC 61.764 63.158 0.00 0.00 0.00 4.61
2784 8679 0.700564 TCTTTGGGATCAGGCTGCTT 59.299 50.000 10.34 0.00 0.00 3.91
2805 8702 0.523966 TCGGTTTAGCAAAATGCCCG 59.476 50.000 10.27 10.27 46.52 6.13
2963 8887 2.694628 CCCATCCCATATTGTTGGTGTG 59.305 50.000 0.00 0.00 34.77 3.82
2965 8889 2.897271 TCCCATATTGTTGGTGTGCT 57.103 45.000 0.00 0.00 34.77 4.40
2980 8907 4.515191 TGGTGTGCTGTGTATTTTCTTCTC 59.485 41.667 0.00 0.00 0.00 2.87
3002 8937 4.023193 TCCTTTCAGGAAAACGAATTCTGC 60.023 41.667 3.52 0.00 42.51 4.26
3013 8948 6.371809 AAACGAATTCTGCACTGAAACTTA 57.628 33.333 3.52 0.00 0.00 2.24
3132 9070 2.011947 TGCTATCACAGAACAGCATGC 58.988 47.619 10.51 10.51 42.53 4.06
3171 9109 7.702348 ACAAAATCTTCTTAGAACAAGCACAAC 59.298 33.333 0.00 0.00 33.20 3.32
3201 9142 0.179029 ACAGGTTTGGTAAGCAGCGT 60.179 50.000 0.00 0.00 34.21 5.07
3224 9167 2.412770 TCTCGAAAAATAAACCGTCCGC 59.587 45.455 0.00 0.00 0.00 5.54
3295 9238 3.148279 GTCCTCCCGACGGCATCT 61.148 66.667 8.86 0.00 0.00 2.90
3396 9339 4.717629 CCAGAGCAACGCGACGGA 62.718 66.667 15.93 0.00 0.00 4.69
3415 9377 0.686441 AGCGTGCCCCTGAGTACATA 60.686 55.000 0.00 0.00 0.00 2.29
3423 9385 2.425829 CCCCTGAGTACATACCTAGCCA 60.426 54.545 0.00 0.00 0.00 4.75
3428 9390 0.677842 GTACATACCTAGCCACCGGG 59.322 60.000 6.32 0.00 37.18 5.73
3492 9455 4.842091 CGCCGCATTGCCAAGCTC 62.842 66.667 2.41 0.00 0.00 4.09
3493 9456 3.446570 GCCGCATTGCCAAGCTCT 61.447 61.111 2.41 0.00 0.00 4.09
3494 9457 2.114670 GCCGCATTGCCAAGCTCTA 61.115 57.895 2.41 0.00 0.00 2.43
3495 9458 2.020131 CCGCATTGCCAAGCTCTAG 58.980 57.895 2.41 0.00 0.00 2.43
3496 9459 0.745845 CCGCATTGCCAAGCTCTAGT 60.746 55.000 2.41 0.00 0.00 2.57
3497 9460 1.473257 CCGCATTGCCAAGCTCTAGTA 60.473 52.381 2.41 0.00 0.00 1.82
3498 9461 1.863454 CGCATTGCCAAGCTCTAGTAG 59.137 52.381 2.41 0.00 0.00 2.57
3499 9462 2.739932 CGCATTGCCAAGCTCTAGTAGT 60.740 50.000 2.41 0.00 0.00 2.73
3500 9463 3.490933 CGCATTGCCAAGCTCTAGTAGTA 60.491 47.826 2.41 0.00 0.00 1.82
3501 9464 3.804873 GCATTGCCAAGCTCTAGTAGTAC 59.195 47.826 0.00 0.00 0.00 2.73
3502 9465 3.777465 TTGCCAAGCTCTAGTAGTACG 57.223 47.619 0.00 0.00 0.00 3.67
3503 9466 2.022195 TGCCAAGCTCTAGTAGTACGG 58.978 52.381 0.00 0.00 0.00 4.02
3504 9467 2.295885 GCCAAGCTCTAGTAGTACGGA 58.704 52.381 0.00 0.00 0.00 4.69
3505 9468 2.885894 GCCAAGCTCTAGTAGTACGGAT 59.114 50.000 0.00 0.00 0.00 4.18
3506 9469 3.318557 GCCAAGCTCTAGTAGTACGGATT 59.681 47.826 0.00 0.00 0.00 3.01
3507 9470 4.202131 GCCAAGCTCTAGTAGTACGGATTT 60.202 45.833 0.00 0.00 0.00 2.17
3508 9471 5.009410 GCCAAGCTCTAGTAGTACGGATTTA 59.991 44.000 0.00 0.00 0.00 1.40
3509 9472 6.294620 GCCAAGCTCTAGTAGTACGGATTTAT 60.295 42.308 0.00 0.00 0.00 1.40
3510 9473 7.306953 CCAAGCTCTAGTAGTACGGATTTATC 58.693 42.308 0.00 0.00 0.00 1.75
3511 9474 6.724694 AGCTCTAGTAGTACGGATTTATCG 57.275 41.667 0.00 0.00 0.00 2.92
3512 9475 5.642919 AGCTCTAGTAGTACGGATTTATCGG 59.357 44.000 0.00 0.00 0.00 4.18
3513 9476 5.411053 GCTCTAGTAGTACGGATTTATCGGT 59.589 44.000 7.86 7.86 42.10 4.69
3514 9477 6.072783 GCTCTAGTAGTACGGATTTATCGGTT 60.073 42.308 8.02 0.00 40.28 4.44
3515 9478 7.521261 GCTCTAGTAGTACGGATTTATCGGTTT 60.521 40.741 8.02 1.87 40.28 3.27
3516 9479 8.225603 TCTAGTAGTACGGATTTATCGGTTTT 57.774 34.615 8.02 1.59 40.28 2.43
3517 9480 8.345565 TCTAGTAGTACGGATTTATCGGTTTTC 58.654 37.037 8.02 1.85 40.28 2.29
3518 9481 6.866480 AGTAGTACGGATTTATCGGTTTTCA 58.134 36.000 8.02 0.00 40.28 2.69
3519 9482 7.495055 AGTAGTACGGATTTATCGGTTTTCAT 58.505 34.615 8.02 0.00 40.28 2.57
3520 9483 6.839820 AGTACGGATTTATCGGTTTTCATC 57.160 37.500 8.02 0.00 40.28 2.92
3521 9484 6.579865 AGTACGGATTTATCGGTTTTCATCT 58.420 36.000 8.02 0.00 40.28 2.90
3522 9485 5.734855 ACGGATTTATCGGTTTTCATCTG 57.265 39.130 0.00 0.00 37.08 2.90
3523 9486 5.183228 ACGGATTTATCGGTTTTCATCTGT 58.817 37.500 0.00 0.00 37.08 3.41
3524 9487 5.646360 ACGGATTTATCGGTTTTCATCTGTT 59.354 36.000 0.00 0.00 37.08 3.16
3525 9488 6.150474 ACGGATTTATCGGTTTTCATCTGTTT 59.850 34.615 0.00 0.00 37.08 2.83
3526 9489 7.027161 CGGATTTATCGGTTTTCATCTGTTTT 58.973 34.615 0.00 0.00 0.00 2.43
3527 9490 7.008266 CGGATTTATCGGTTTTCATCTGTTTTG 59.992 37.037 0.00 0.00 0.00 2.44
3528 9491 7.812669 GGATTTATCGGTTTTCATCTGTTTTGT 59.187 33.333 0.00 0.00 0.00 2.83
3529 9492 8.742554 ATTTATCGGTTTTCATCTGTTTTGTC 57.257 30.769 0.00 0.00 0.00 3.18
3530 9493 7.504924 TTATCGGTTTTCATCTGTTTTGTCT 57.495 32.000 0.00 0.00 0.00 3.41
3531 9494 5.828299 TCGGTTTTCATCTGTTTTGTCTT 57.172 34.783 0.00 0.00 0.00 3.01
3532 9495 6.202516 TCGGTTTTCATCTGTTTTGTCTTT 57.797 33.333 0.00 0.00 0.00 2.52
3533 9496 6.626302 TCGGTTTTCATCTGTTTTGTCTTTT 58.374 32.000 0.00 0.00 0.00 2.27
3534 9497 6.529829 TCGGTTTTCATCTGTTTTGTCTTTTG 59.470 34.615 0.00 0.00 0.00 2.44
3535 9498 6.310224 CGGTTTTCATCTGTTTTGTCTTTTGT 59.690 34.615 0.00 0.00 0.00 2.83
3536 9499 7.148656 CGGTTTTCATCTGTTTTGTCTTTTGTT 60.149 33.333 0.00 0.00 0.00 2.83
3537 9500 8.503196 GGTTTTCATCTGTTTTGTCTTTTGTTT 58.497 29.630 0.00 0.00 0.00 2.83
3538 9501 9.877137 GTTTTCATCTGTTTTGTCTTTTGTTTT 57.123 25.926 0.00 0.00 0.00 2.43
3541 9504 8.824159 TCATCTGTTTTGTCTTTTGTTTTTCA 57.176 26.923 0.00 0.00 0.00 2.69
3542 9505 8.924691 TCATCTGTTTTGTCTTTTGTTTTTCAG 58.075 29.630 0.00 0.00 0.00 3.02
3543 9506 8.711457 CATCTGTTTTGTCTTTTGTTTTTCAGT 58.289 29.630 0.00 0.00 0.00 3.41
3544 9507 8.655651 TCTGTTTTGTCTTTTGTTTTTCAGTT 57.344 26.923 0.00 0.00 0.00 3.16
3545 9508 9.751542 TCTGTTTTGTCTTTTGTTTTTCAGTTA 57.248 25.926 0.00 0.00 0.00 2.24
3546 9509 9.791838 CTGTTTTGTCTTTTGTTTTTCAGTTAC 57.208 29.630 0.00 0.00 0.00 2.50
3547 9510 9.535878 TGTTTTGTCTTTTGTTTTTCAGTTACT 57.464 25.926 0.00 0.00 0.00 2.24
3551 9514 9.535878 TTGTCTTTTGTTTTTCAGTTACTTTGT 57.464 25.926 0.00 0.00 0.00 2.83
3552 9515 9.535878 TGTCTTTTGTTTTTCAGTTACTTTGTT 57.464 25.926 0.00 0.00 0.00 2.83
3554 9517 9.974980 TCTTTTGTTTTTCAGTTACTTTGTTCT 57.025 25.926 0.00 0.00 0.00 3.01
3557 9520 9.751542 TTTGTTTTTCAGTTACTTTGTTCTTCA 57.248 25.926 0.00 0.00 0.00 3.02
3558 9521 9.921637 TTGTTTTTCAGTTACTTTGTTCTTCAT 57.078 25.926 0.00 0.00 0.00 2.57
3559 9522 9.567848 TGTTTTTCAGTTACTTTGTTCTTCATC 57.432 29.630 0.00 0.00 0.00 2.92
3560 9523 9.788960 GTTTTTCAGTTACTTTGTTCTTCATCT 57.211 29.630 0.00 0.00 0.00 2.90
3561 9524 9.787532 TTTTTCAGTTACTTTGTTCTTCATCTG 57.212 29.630 0.00 0.00 0.00 2.90
3562 9525 8.506168 TTTCAGTTACTTTGTTCTTCATCTGT 57.494 30.769 0.00 0.00 0.00 3.41
3563 9526 8.506168 TTCAGTTACTTTGTTCTTCATCTGTT 57.494 30.769 0.00 0.00 0.00 3.16
3564 9527 8.506168 TCAGTTACTTTGTTCTTCATCTGTTT 57.494 30.769 0.00 0.00 0.00 2.83
3565 9528 8.956426 TCAGTTACTTTGTTCTTCATCTGTTTT 58.044 29.630 0.00 0.00 0.00 2.43
3566 9529 9.226345 CAGTTACTTTGTTCTTCATCTGTTTTC 57.774 33.333 0.00 0.00 0.00 2.29
3567 9530 9.178758 AGTTACTTTGTTCTTCATCTGTTTTCT 57.821 29.630 0.00 0.00 0.00 2.52
3568 9531 9.788960 GTTACTTTGTTCTTCATCTGTTTTCTT 57.211 29.630 0.00 0.00 0.00 2.52
3570 9533 8.055279 ACTTTGTTCTTCATCTGTTTTCTTCA 57.945 30.769 0.00 0.00 0.00 3.02
3571 9534 8.186821 ACTTTGTTCTTCATCTGTTTTCTTCAG 58.813 33.333 0.00 0.00 0.00 3.02
3572 9535 6.624352 TGTTCTTCATCTGTTTTCTTCAGG 57.376 37.500 0.00 0.00 34.15 3.86
3573 9536 6.122277 TGTTCTTCATCTGTTTTCTTCAGGT 58.878 36.000 0.00 0.00 34.15 4.00
3574 9537 6.603201 TGTTCTTCATCTGTTTTCTTCAGGTT 59.397 34.615 0.00 0.00 34.15 3.50
3575 9538 7.122650 TGTTCTTCATCTGTTTTCTTCAGGTTT 59.877 33.333 0.00 0.00 34.15 3.27
3576 9539 7.645058 TCTTCATCTGTTTTCTTCAGGTTTT 57.355 32.000 0.00 0.00 34.15 2.43
3577 9540 8.066612 TCTTCATCTGTTTTCTTCAGGTTTTT 57.933 30.769 0.00 0.00 34.15 1.94
3578 9541 8.190784 TCTTCATCTGTTTTCTTCAGGTTTTTC 58.809 33.333 0.00 0.00 34.15 2.29
3579 9542 7.645058 TCATCTGTTTTCTTCAGGTTTTTCT 57.355 32.000 0.00 0.00 34.15 2.52
3580 9543 8.066612 TCATCTGTTTTCTTCAGGTTTTTCTT 57.933 30.769 0.00 0.00 34.15 2.52
3581 9544 8.190784 TCATCTGTTTTCTTCAGGTTTTTCTTC 58.809 33.333 0.00 0.00 34.15 2.87
3582 9545 7.703058 TCTGTTTTCTTCAGGTTTTTCTTCT 57.297 32.000 0.00 0.00 34.15 2.85
3583 9546 8.122472 TCTGTTTTCTTCAGGTTTTTCTTCTT 57.878 30.769 0.00 0.00 34.15 2.52
3584 9547 8.585018 TCTGTTTTCTTCAGGTTTTTCTTCTTT 58.415 29.630 0.00 0.00 34.15 2.52
3585 9548 9.208022 CTGTTTTCTTCAGGTTTTTCTTCTTTT 57.792 29.630 0.00 0.00 0.00 2.27
3586 9549 9.554395 TGTTTTCTTCAGGTTTTTCTTCTTTTT 57.446 25.926 0.00 0.00 0.00 1.94
3641 9604 7.865875 TTTTCACATGAATGTACATTTTCCG 57.134 32.000 21.63 12.98 39.39 4.30
3642 9605 6.567687 TTCACATGAATGTACATTTTCCGT 57.432 33.333 21.63 13.55 39.39 4.69
3643 9606 7.674471 TTCACATGAATGTACATTTTCCGTA 57.326 32.000 21.63 5.24 39.39 4.02
3644 9607 7.857734 TCACATGAATGTACATTTTCCGTAT 57.142 32.000 21.63 7.74 39.39 3.06
3645 9608 8.950208 TCACATGAATGTACATTTTCCGTATA 57.050 30.769 21.63 6.92 39.39 1.47
3646 9609 8.822855 TCACATGAATGTACATTTTCCGTATAC 58.177 33.333 21.63 6.83 39.39 1.47
3647 9610 8.608317 CACATGAATGTACATTTTCCGTATACA 58.392 33.333 21.63 11.95 39.39 2.29
3648 9611 9.337396 ACATGAATGTACATTTTCCGTATACAT 57.663 29.630 21.63 13.53 39.68 2.29
3649 9612 9.811655 CATGAATGTACATTTTCCGTATACATC 57.188 33.333 21.63 5.58 35.85 3.06
3650 9613 8.950208 TGAATGTACATTTTCCGTATACATCA 57.050 30.769 21.63 8.06 35.85 3.07
3651 9614 9.040939 TGAATGTACATTTTCCGTATACATCAG 57.959 33.333 21.63 0.00 35.85 2.90
3652 9615 9.256477 GAATGTACATTTTCCGTATACATCAGA 57.744 33.333 21.63 0.00 35.85 3.27
3653 9616 9.607988 AATGTACATTTTCCGTATACATCAGAA 57.392 29.630 15.47 0.00 35.85 3.02
3654 9617 9.607988 ATGTACATTTTCCGTATACATCAGAAA 57.392 29.630 1.41 3.89 32.32 2.52
3655 9618 8.875803 TGTACATTTTCCGTATACATCAGAAAC 58.124 33.333 3.32 0.00 0.00 2.78
3656 9619 7.915293 ACATTTTCCGTATACATCAGAAACA 57.085 32.000 3.32 0.04 0.00 2.83
3657 9620 8.506168 ACATTTTCCGTATACATCAGAAACAT 57.494 30.769 3.32 1.93 0.00 2.71
3658 9621 8.956426 ACATTTTCCGTATACATCAGAAACATT 58.044 29.630 3.32 0.00 0.00 2.71
3662 9625 7.652300 TCCGTATACATCAGAAACATTATGC 57.348 36.000 3.32 0.00 0.00 3.14
3663 9626 7.441836 TCCGTATACATCAGAAACATTATGCT 58.558 34.615 3.32 0.00 0.00 3.79
3664 9627 8.581578 TCCGTATACATCAGAAACATTATGCTA 58.418 33.333 3.32 0.00 0.00 3.49
3665 9628 9.203421 CCGTATACATCAGAAACATTATGCTAA 57.797 33.333 3.32 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.840427 GGCAAAAACCATCATATATACATGTAC 57.160 33.333 7.96 0.00 0.00 2.90
2 3 8.710749 AGGCAAAAACCATCATATATACATGT 57.289 30.769 2.69 2.69 0.00 3.21
4 5 8.172741 AGGAGGCAAAAACCATCATATATACAT 58.827 33.333 0.00 0.00 0.00 2.29
5 6 7.448161 CAGGAGGCAAAAACCATCATATATACA 59.552 37.037 0.00 0.00 0.00 2.29
6 7 7.665559 TCAGGAGGCAAAAACCATCATATATAC 59.334 37.037 0.00 0.00 0.00 1.47
7 8 7.754624 TCAGGAGGCAAAAACCATCATATATA 58.245 34.615 0.00 0.00 0.00 0.86
8 9 6.613699 TCAGGAGGCAAAAACCATCATATAT 58.386 36.000 0.00 0.00 0.00 0.86
9 10 6.012337 TCAGGAGGCAAAAACCATCATATA 57.988 37.500 0.00 0.00 0.00 0.86
10 11 4.870636 TCAGGAGGCAAAAACCATCATAT 58.129 39.130 0.00 0.00 0.00 1.78
11 12 4.314522 TCAGGAGGCAAAAACCATCATA 57.685 40.909 0.00 0.00 0.00 2.15
12 13 3.173953 TCAGGAGGCAAAAACCATCAT 57.826 42.857 0.00 0.00 0.00 2.45
13 14 2.673775 TCAGGAGGCAAAAACCATCA 57.326 45.000 0.00 0.00 0.00 3.07
14 15 5.859205 ATTATCAGGAGGCAAAAACCATC 57.141 39.130 0.00 0.00 0.00 3.51
15 16 7.068702 TGATATTATCAGGAGGCAAAAACCAT 58.931 34.615 2.14 0.00 33.59 3.55
16 17 6.430864 TGATATTATCAGGAGGCAAAAACCA 58.569 36.000 2.14 0.00 33.59 3.67
17 18 6.959639 TGATATTATCAGGAGGCAAAAACC 57.040 37.500 2.14 0.00 33.59 3.27
18 19 8.000780 ACTTGATATTATCAGGAGGCAAAAAC 57.999 34.615 19.34 0.00 40.94 2.43
19 20 8.469200 CAACTTGATATTATCAGGAGGCAAAAA 58.531 33.333 19.34 0.00 40.94 1.94
20 21 7.416664 GCAACTTGATATTATCAGGAGGCAAAA 60.417 37.037 19.34 0.00 40.94 2.44
21 22 6.039717 GCAACTTGATATTATCAGGAGGCAAA 59.960 38.462 19.34 0.00 40.94 3.68
22 23 5.532406 GCAACTTGATATTATCAGGAGGCAA 59.468 40.000 19.34 0.00 40.94 4.52
23 24 5.065914 GCAACTTGATATTATCAGGAGGCA 58.934 41.667 19.34 0.00 40.94 4.75
24 25 5.312079 AGCAACTTGATATTATCAGGAGGC 58.688 41.667 19.34 19.08 40.94 4.70
25 26 9.512588 AAATAGCAACTTGATATTATCAGGAGG 57.487 33.333 19.34 12.44 37.91 4.30
38 39 9.587772 GATAGTGTTAGAGAAATAGCAACTTGA 57.412 33.333 0.00 0.00 0.00 3.02
39 40 9.593134 AGATAGTGTTAGAGAAATAGCAACTTG 57.407 33.333 0.00 0.00 0.00 3.16
41 42 9.593134 CAAGATAGTGTTAGAGAAATAGCAACT 57.407 33.333 0.00 0.00 0.00 3.16
42 43 8.331742 GCAAGATAGTGTTAGAGAAATAGCAAC 58.668 37.037 0.00 0.00 0.00 4.17
43 44 8.260818 AGCAAGATAGTGTTAGAGAAATAGCAA 58.739 33.333 0.00 0.00 0.00 3.91
44 45 7.708322 CAGCAAGATAGTGTTAGAGAAATAGCA 59.292 37.037 0.00 0.00 0.00 3.49
45 46 7.923344 TCAGCAAGATAGTGTTAGAGAAATAGC 59.077 37.037 0.00 0.00 0.00 2.97
46 47 9.979578 ATCAGCAAGATAGTGTTAGAGAAATAG 57.020 33.333 0.00 0.00 34.43 1.73
47 48 9.973450 GATCAGCAAGATAGTGTTAGAGAAATA 57.027 33.333 0.00 0.00 37.00 1.40
48 49 8.481314 TGATCAGCAAGATAGTGTTAGAGAAAT 58.519 33.333 0.00 0.00 37.00 2.17
49 50 7.840931 TGATCAGCAAGATAGTGTTAGAGAAA 58.159 34.615 0.00 0.00 37.00 2.52
50 51 7.410120 TGATCAGCAAGATAGTGTTAGAGAA 57.590 36.000 0.00 0.00 37.00 2.87
51 52 7.410120 TTGATCAGCAAGATAGTGTTAGAGA 57.590 36.000 0.00 0.00 37.00 3.10
52 53 8.659925 ATTTGATCAGCAAGATAGTGTTAGAG 57.340 34.615 0.00 0.00 37.00 2.43
53 54 8.481314 AGATTTGATCAGCAAGATAGTGTTAGA 58.519 33.333 0.00 0.00 37.00 2.10
54 55 8.659925 AGATTTGATCAGCAAGATAGTGTTAG 57.340 34.615 0.00 0.00 37.00 2.34
55 56 9.102757 GAAGATTTGATCAGCAAGATAGTGTTA 57.897 33.333 0.00 0.00 37.00 2.41
56 57 7.201591 CGAAGATTTGATCAGCAAGATAGTGTT 60.202 37.037 0.00 0.00 37.00 3.32
57 58 6.257411 CGAAGATTTGATCAGCAAGATAGTGT 59.743 38.462 0.00 0.00 37.00 3.55
58 59 6.292757 CCGAAGATTTGATCAGCAAGATAGTG 60.293 42.308 0.00 0.00 37.00 2.74
83 85 1.678101 ACAACAGTTGCTGAAGGCTTC 59.322 47.619 20.27 20.27 42.39 3.86
301 310 0.322456 TTTCTGGCCATCCTTGACCG 60.322 55.000 5.51 0.00 0.00 4.79
313 322 4.324402 CGTGCAAAACATATCTTTTCTGGC 59.676 41.667 0.00 0.00 0.00 4.85
437 447 1.586154 CGAAATCACACACCAGCCCC 61.586 60.000 0.00 0.00 0.00 5.80
448 458 3.934457 AATTGGGGTCAACGAAATCAC 57.066 42.857 0.00 0.00 35.48 3.06
478 488 3.624777 TCATGAAAGAGAAATGAGGGGC 58.375 45.455 0.00 0.00 0.00 5.80
630 648 1.545582 GATTAGCAGCACAAGGGCAAA 59.454 47.619 0.00 0.00 35.83 3.68
812 852 2.355513 GCCAATGAGACATCTGTGACCT 60.356 50.000 0.00 0.00 0.00 3.85
992 6437 1.370609 CAGCTCTTGCATGTCTCCTG 58.629 55.000 0.00 0.00 42.74 3.86
1154 6605 5.616270 TGCTGCAGAAATTATCCGGTATTA 58.384 37.500 20.43 0.00 0.00 0.98
1487 6944 4.158579 TGTTGTTGTAGTCCAAATGCAACA 59.841 37.500 6.90 6.90 44.83 3.33
1762 7221 1.366319 AGGAAGGTGAGGTGCTTCAT 58.634 50.000 0.00 0.00 0.00 2.57
1878 7754 4.142780 GGCATTAACTCGCCCCTC 57.857 61.111 1.69 0.00 42.82 4.30
2348 8229 6.638610 CATACTGATATTGGGATCTGTCCTC 58.361 44.000 0.00 0.00 44.44 3.71
2381 8262 4.762251 AGAAGTCCAGTATTTGCAGGTTTC 59.238 41.667 0.00 0.00 0.00 2.78
2392 8273 4.866508 TGTTGTTCGAGAAGTCCAGTAT 57.133 40.909 0.00 0.00 0.00 2.12
2452 8333 4.385825 ACGTTGAATGCTGAAAGGAAGTA 58.614 39.130 0.00 0.00 38.32 2.24
2619 8505 2.865551 GTCAGTTTGTTTGGTTGCCATG 59.134 45.455 0.00 0.00 31.53 3.66
2784 8679 2.608261 CGGGCATTTTGCTAAACCGAAA 60.608 45.455 13.31 0.00 43.77 3.46
2805 8702 0.875059 CCTCGGGAAGCTTGTTTGAC 59.125 55.000 2.10 0.00 0.00 3.18
2851 8769 5.466728 GGAATCATGCTTCGCACTAGAATAA 59.533 40.000 0.00 0.00 43.04 1.40
2963 8887 6.560253 TGAAAGGAGAAGAAAATACACAGC 57.440 37.500 0.00 0.00 0.00 4.40
3013 8948 9.213799 TGAAGCAAAGTAAACTGTGAAAAATTT 57.786 25.926 4.42 0.00 32.93 1.82
3068 9004 7.928167 CCATACTACATCAGTTCATCTTGCTTA 59.072 37.037 0.00 0.00 38.80 3.09
3069 9005 6.765036 CCATACTACATCAGTTCATCTTGCTT 59.235 38.462 0.00 0.00 38.80 3.91
3070 9006 6.126940 ACCATACTACATCAGTTCATCTTGCT 60.127 38.462 0.00 0.00 38.80 3.91
3071 9007 6.018425 CACCATACTACATCAGTTCATCTTGC 60.018 42.308 0.00 0.00 38.80 4.01
3132 9070 8.611654 AAGAAGATTTTGTGATGGATTTTTGG 57.388 30.769 0.00 0.00 0.00 3.28
3171 9109 3.541632 ACCAAACCTGTTCAGTGTACTG 58.458 45.455 5.67 5.67 45.08 2.74
3201 9142 4.268405 GCGGACGGTTTATTTTTCGAGATA 59.732 41.667 0.00 0.00 0.00 1.98
3492 9455 8.131100 TGAAAACCGATAAATCCGTACTACTAG 58.869 37.037 0.00 0.00 0.00 2.57
3493 9456 7.995289 TGAAAACCGATAAATCCGTACTACTA 58.005 34.615 0.00 0.00 0.00 1.82
3494 9457 6.866480 TGAAAACCGATAAATCCGTACTACT 58.134 36.000 0.00 0.00 0.00 2.57
3495 9458 7.650903 AGATGAAAACCGATAAATCCGTACTAC 59.349 37.037 0.00 0.00 0.00 2.73
3496 9459 7.650504 CAGATGAAAACCGATAAATCCGTACTA 59.349 37.037 0.00 0.00 0.00 1.82
3497 9460 6.479001 CAGATGAAAACCGATAAATCCGTACT 59.521 38.462 0.00 0.00 0.00 2.73
3498 9461 6.257193 ACAGATGAAAACCGATAAATCCGTAC 59.743 38.462 0.00 0.00 0.00 3.67
3499 9462 6.342906 ACAGATGAAAACCGATAAATCCGTA 58.657 36.000 0.00 0.00 0.00 4.02
3500 9463 5.183228 ACAGATGAAAACCGATAAATCCGT 58.817 37.500 0.00 0.00 0.00 4.69
3501 9464 5.734855 ACAGATGAAAACCGATAAATCCG 57.265 39.130 0.00 0.00 0.00 4.18
3502 9465 7.812669 ACAAAACAGATGAAAACCGATAAATCC 59.187 33.333 0.00 0.00 0.00 3.01
3503 9466 8.742554 ACAAAACAGATGAAAACCGATAAATC 57.257 30.769 0.00 0.00 0.00 2.17
3504 9467 8.576442 AGACAAAACAGATGAAAACCGATAAAT 58.424 29.630 0.00 0.00 0.00 1.40
3505 9468 7.936584 AGACAAAACAGATGAAAACCGATAAA 58.063 30.769 0.00 0.00 0.00 1.40
3506 9469 7.504924 AGACAAAACAGATGAAAACCGATAA 57.495 32.000 0.00 0.00 0.00 1.75
3507 9470 7.504924 AAGACAAAACAGATGAAAACCGATA 57.495 32.000 0.00 0.00 0.00 2.92
3508 9471 6.391227 AAGACAAAACAGATGAAAACCGAT 57.609 33.333 0.00 0.00 0.00 4.18
3509 9472 5.828299 AAGACAAAACAGATGAAAACCGA 57.172 34.783 0.00 0.00 0.00 4.69
3510 9473 6.310224 ACAAAAGACAAAACAGATGAAAACCG 59.690 34.615 0.00 0.00 0.00 4.44
3511 9474 7.595311 ACAAAAGACAAAACAGATGAAAACC 57.405 32.000 0.00 0.00 0.00 3.27
3512 9475 9.877137 AAAACAAAAGACAAAACAGATGAAAAC 57.123 25.926 0.00 0.00 0.00 2.43
3515 9478 9.265901 TGAAAAACAAAAGACAAAACAGATGAA 57.734 25.926 0.00 0.00 0.00 2.57
3516 9479 8.824159 TGAAAAACAAAAGACAAAACAGATGA 57.176 26.923 0.00 0.00 0.00 2.92
3517 9480 8.711457 ACTGAAAAACAAAAGACAAAACAGATG 58.289 29.630 0.00 0.00 0.00 2.90
3518 9481 8.831715 ACTGAAAAACAAAAGACAAAACAGAT 57.168 26.923 0.00 0.00 0.00 2.90
3519 9482 8.655651 AACTGAAAAACAAAAGACAAAACAGA 57.344 26.923 0.00 0.00 0.00 3.41
3520 9483 9.791838 GTAACTGAAAAACAAAAGACAAAACAG 57.208 29.630 0.00 0.00 0.00 3.16
3521 9484 9.535878 AGTAACTGAAAAACAAAAGACAAAACA 57.464 25.926 0.00 0.00 0.00 2.83
3525 9488 9.535878 ACAAAGTAACTGAAAAACAAAAGACAA 57.464 25.926 0.00 0.00 0.00 3.18
3526 9489 9.535878 AACAAAGTAACTGAAAAACAAAAGACA 57.464 25.926 0.00 0.00 0.00 3.41
3528 9491 9.974980 AGAACAAAGTAACTGAAAAACAAAAGA 57.025 25.926 0.00 0.00 0.00 2.52
3531 9494 9.751542 TGAAGAACAAAGTAACTGAAAAACAAA 57.248 25.926 0.00 0.00 0.00 2.83
3532 9495 9.921637 ATGAAGAACAAAGTAACTGAAAAACAA 57.078 25.926 0.00 0.00 0.00 2.83
3533 9496 9.567848 GATGAAGAACAAAGTAACTGAAAAACA 57.432 29.630 0.00 0.00 0.00 2.83
3534 9497 9.788960 AGATGAAGAACAAAGTAACTGAAAAAC 57.211 29.630 0.00 0.00 0.00 2.43
3535 9498 9.787532 CAGATGAAGAACAAAGTAACTGAAAAA 57.212 29.630 0.00 0.00 0.00 1.94
3536 9499 8.956426 ACAGATGAAGAACAAAGTAACTGAAAA 58.044 29.630 0.00 0.00 0.00 2.29
3537 9500 8.506168 ACAGATGAAGAACAAAGTAACTGAAA 57.494 30.769 0.00 0.00 0.00 2.69
3538 9501 8.506168 AACAGATGAAGAACAAAGTAACTGAA 57.494 30.769 0.00 0.00 0.00 3.02
3539 9502 8.506168 AAACAGATGAAGAACAAAGTAACTGA 57.494 30.769 0.00 0.00 0.00 3.41
3540 9503 9.226345 GAAAACAGATGAAGAACAAAGTAACTG 57.774 33.333 0.00 0.00 0.00 3.16
3541 9504 9.178758 AGAAAACAGATGAAGAACAAAGTAACT 57.821 29.630 0.00 0.00 0.00 2.24
3542 9505 9.788960 AAGAAAACAGATGAAGAACAAAGTAAC 57.211 29.630 0.00 0.00 0.00 2.50
3544 9507 9.173021 TGAAGAAAACAGATGAAGAACAAAGTA 57.827 29.630 0.00 0.00 0.00 2.24
3545 9508 8.055279 TGAAGAAAACAGATGAAGAACAAAGT 57.945 30.769 0.00 0.00 0.00 2.66
3546 9509 7.646922 CCTGAAGAAAACAGATGAAGAACAAAG 59.353 37.037 0.00 0.00 37.54 2.77
3547 9510 7.122650 ACCTGAAGAAAACAGATGAAGAACAAA 59.877 33.333 0.00 0.00 37.54 2.83
3548 9511 6.603201 ACCTGAAGAAAACAGATGAAGAACAA 59.397 34.615 0.00 0.00 37.54 2.83
3549 9512 6.122277 ACCTGAAGAAAACAGATGAAGAACA 58.878 36.000 0.00 0.00 37.54 3.18
3550 9513 6.625873 ACCTGAAGAAAACAGATGAAGAAC 57.374 37.500 0.00 0.00 37.54 3.01
3551 9514 7.645058 AAACCTGAAGAAAACAGATGAAGAA 57.355 32.000 0.00 0.00 37.54 2.52
3552 9515 7.645058 AAAACCTGAAGAAAACAGATGAAGA 57.355 32.000 0.00 0.00 37.54 2.87
3553 9516 8.193438 AGAAAAACCTGAAGAAAACAGATGAAG 58.807 33.333 0.00 0.00 37.54 3.02
3554 9517 8.066612 AGAAAAACCTGAAGAAAACAGATGAA 57.933 30.769 0.00 0.00 37.54 2.57
3555 9518 7.645058 AGAAAAACCTGAAGAAAACAGATGA 57.355 32.000 0.00 0.00 37.54 2.92
3556 9519 8.193438 AGAAGAAAAACCTGAAGAAAACAGATG 58.807 33.333 0.00 0.00 37.54 2.90
3557 9520 8.298729 AGAAGAAAAACCTGAAGAAAACAGAT 57.701 30.769 0.00 0.00 37.54 2.90
3558 9521 7.703058 AGAAGAAAAACCTGAAGAAAACAGA 57.297 32.000 0.00 0.00 37.54 3.41
3559 9522 8.763049 AAAGAAGAAAAACCTGAAGAAAACAG 57.237 30.769 0.00 0.00 35.43 3.16
3560 9523 9.554395 AAAAAGAAGAAAAACCTGAAGAAAACA 57.446 25.926 0.00 0.00 0.00 2.83
3616 9579 7.923344 ACGGAAAATGTACATTCATGTGAAAAA 59.077 29.630 21.02 0.00 41.89 1.94
3617 9580 7.429633 ACGGAAAATGTACATTCATGTGAAAA 58.570 30.769 21.02 0.00 41.89 2.29
3618 9581 6.976088 ACGGAAAATGTACATTCATGTGAAA 58.024 32.000 21.02 0.00 41.89 2.69
3619 9582 6.567687 ACGGAAAATGTACATTCATGTGAA 57.432 33.333 21.02 0.00 41.89 3.18
3620 9583 7.857734 ATACGGAAAATGTACATTCATGTGA 57.142 32.000 21.02 7.02 41.89 3.58
3621 9584 8.608317 TGTATACGGAAAATGTACATTCATGTG 58.392 33.333 21.02 12.44 41.89 3.21
3622 9585 8.725405 TGTATACGGAAAATGTACATTCATGT 57.275 30.769 21.02 17.64 44.48 3.21
3623 9586 9.811655 GATGTATACGGAAAATGTACATTCATG 57.188 33.333 21.02 13.37 35.32 3.07
3624 9587 9.554395 TGATGTATACGGAAAATGTACATTCAT 57.446 29.630 21.02 15.40 35.32 2.57
3625 9588 8.950208 TGATGTATACGGAAAATGTACATTCA 57.050 30.769 21.02 11.59 35.32 2.57
3626 9589 9.256477 TCTGATGTATACGGAAAATGTACATTC 57.744 33.333 21.02 10.80 35.32 2.67
3627 9590 9.607988 TTCTGATGTATACGGAAAATGTACATT 57.392 29.630 15.47 15.47 35.32 2.71
3628 9591 9.607988 TTTCTGATGTATACGGAAAATGTACAT 57.392 29.630 1.41 1.41 38.92 2.29
3629 9592 8.875803 GTTTCTGATGTATACGGAAAATGTACA 58.124 33.333 0.00 0.00 41.95 2.90
3630 9593 8.875803 TGTTTCTGATGTATACGGAAAATGTAC 58.124 33.333 0.00 0.00 41.95 2.90
3631 9594 9.607988 ATGTTTCTGATGTATACGGAAAATGTA 57.392 29.630 0.00 0.00 41.95 2.29
3632 9595 7.915293 TGTTTCTGATGTATACGGAAAATGT 57.085 32.000 0.00 0.00 41.95 2.71
3636 9599 8.556194 GCATAATGTTTCTGATGTATACGGAAA 58.444 33.333 0.00 0.00 39.36 3.13
3637 9600 7.931407 AGCATAATGTTTCTGATGTATACGGAA 59.069 33.333 0.00 0.00 0.00 4.30
3638 9601 7.441836 AGCATAATGTTTCTGATGTATACGGA 58.558 34.615 0.00 0.00 0.00 4.69
3639 9602 7.658179 AGCATAATGTTTCTGATGTATACGG 57.342 36.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.