Multiple sequence alignment - TraesCS6D01G116000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G116000 chr6D 100.000 4619 0 0 1 4619 82220930 82216312 0.000000e+00 8530
1 TraesCS6D01G116000 chr6D 84.886 4175 484 67 315 4387 82204105 82199976 0.000000e+00 4078
2 TraesCS6D01G116000 chr6D 81.497 3394 565 42 315 3667 82237778 82234407 0.000000e+00 2730
3 TraesCS6D01G116000 chr6D 80.904 3362 580 37 342 3666 81926272 81922936 0.000000e+00 2595
4 TraesCS6D01G116000 chr6D 87.465 2130 258 6 321 2446 83108657 83106533 0.000000e+00 2446
5 TraesCS6D01G116000 chr6D 77.122 3086 653 44 520 3579 81750104 81747046 0.000000e+00 1738
6 TraesCS6D01G116000 chr6D 79.590 2538 416 66 1267 3729 82208968 82206458 0.000000e+00 1724
7 TraesCS6D01G116000 chr6A 92.276 3431 255 5 315 3739 99016302 99012876 0.000000e+00 4859
8 TraesCS6D01G116000 chr6A 89.543 3433 347 9 314 3739 98982497 98979070 0.000000e+00 4340
9 TraesCS6D01G116000 chr6A 87.112 3321 394 26 315 3617 98888228 98884924 0.000000e+00 3731
10 TraesCS6D01G116000 chr6A 80.921 3365 574 45 342 3666 98316058 98312722 0.000000e+00 2595
11 TraesCS6D01G116000 chr6A 80.678 3214 581 31 421 3617 98309997 98306807 0.000000e+00 2459
12 TraesCS6D01G116000 chr6A 76.813 3088 665 41 520 3582 98242378 98239317 0.000000e+00 1688
13 TraesCS6D01G116000 chr6A 79.843 2044 386 23 440 2469 100368181 100366150 0.000000e+00 1469
14 TraesCS6D01G116000 chr6A 88.503 748 46 12 3739 4450 98979044 98978301 0.000000e+00 869
15 TraesCS6D01G116000 chr6A 82.079 731 68 21 3739 4439 99012850 99012153 2.410000e-157 566
16 TraesCS6D01G116000 chr6A 95.082 305 13 2 13 315 607414751 607414447 3.230000e-131 479
17 TraesCS6D01G116000 chr6A 94.481 308 14 3 10 315 246602912 246602606 5.410000e-129 472
18 TraesCS6D01G116000 chr6A 77.951 576 75 32 3911 4451 98913657 98913099 3.470000e-81 313
19 TraesCS6D01G116000 chr6A 82.639 144 11 4 4478 4615 98978220 98978085 1.050000e-21 115
20 TraesCS6D01G116000 chr6B 87.235 3400 379 34 315 3677 157109510 157106129 0.000000e+00 3823
21 TraesCS6D01G116000 chr6B 81.582 3388 568 39 315 3666 157489424 157486057 0.000000e+00 2748
22 TraesCS6D01G116000 chr6B 80.964 3362 578 38 342 3666 156654927 156651591 0.000000e+00 2606
23 TraesCS6D01G116000 chr6B 80.614 3224 577 36 421 3617 156550970 156547768 0.000000e+00 2447
24 TraesCS6D01G116000 chr6B 79.628 3333 606 55 315 3613 156741113 156737820 0.000000e+00 2326
25 TraesCS6D01G116000 chr6B 79.557 3297 601 50 319 3584 156529029 156525775 0.000000e+00 2287
26 TraesCS6D01G116000 chr6B 78.415 3294 636 55 323 3579 156533308 156530053 0.000000e+00 2074
27 TraesCS6D01G116000 chr6B 80.354 565 81 12 3843 4387 157103995 157103441 7.200000e-108 401
28 TraesCS6D01G116000 chr6B 79.630 540 66 24 3937 4451 157127306 157126786 9.510000e-92 348
29 TraesCS6D01G116000 chr7A 95.380 303 11 3 9 308 75366942 75367244 3.230000e-131 479
30 TraesCS6D01G116000 chr7A 95.033 302 13 2 9 308 706063881 706063580 1.500000e-129 473
31 TraesCS6D01G116000 chr2A 94.788 307 13 3 10 314 292955013 292955318 4.180000e-130 475
32 TraesCS6D01G116000 chrUn 94.481 308 14 3 10 315 147199022 147199328 5.410000e-129 472
33 TraesCS6D01G116000 chr3A 94.175 309 16 2 9 315 205324209 205323901 1.950000e-128 470
34 TraesCS6D01G116000 chr7B 94.137 307 17 1 10 315 391678045 391677739 2.520000e-127 466
35 TraesCS6D01G116000 chr7B 94.137 307 17 1 10 315 391679606 391679300 2.520000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G116000 chr6D 82216312 82220930 4618 True 8530.000000 8530 100.0000 1 4619 1 chr6D.!!$R3 4618
1 TraesCS6D01G116000 chr6D 82199976 82208968 8992 True 2901.000000 4078 82.2380 315 4387 2 chr6D.!!$R6 4072
2 TraesCS6D01G116000 chr6D 82234407 82237778 3371 True 2730.000000 2730 81.4970 315 3667 1 chr6D.!!$R4 3352
3 TraesCS6D01G116000 chr6D 81922936 81926272 3336 True 2595.000000 2595 80.9040 342 3666 1 chr6D.!!$R2 3324
4 TraesCS6D01G116000 chr6D 83106533 83108657 2124 True 2446.000000 2446 87.4650 321 2446 1 chr6D.!!$R5 2125
5 TraesCS6D01G116000 chr6D 81747046 81750104 3058 True 1738.000000 1738 77.1220 520 3579 1 chr6D.!!$R1 3059
6 TraesCS6D01G116000 chr6A 98884924 98888228 3304 True 3731.000000 3731 87.1120 315 3617 1 chr6A.!!$R2 3302
7 TraesCS6D01G116000 chr6A 99012153 99016302 4149 True 2712.500000 4859 87.1775 315 4439 2 chr6A.!!$R9 4124
8 TraesCS6D01G116000 chr6A 98306807 98316058 9251 True 2527.000000 2595 80.7995 342 3666 2 chr6A.!!$R7 3324
9 TraesCS6D01G116000 chr6A 98978085 98982497 4412 True 1774.666667 4340 86.8950 314 4615 3 chr6A.!!$R8 4301
10 TraesCS6D01G116000 chr6A 98239317 98242378 3061 True 1688.000000 1688 76.8130 520 3582 1 chr6A.!!$R1 3062
11 TraesCS6D01G116000 chr6A 100366150 100368181 2031 True 1469.000000 1469 79.8430 440 2469 1 chr6A.!!$R4 2029
12 TraesCS6D01G116000 chr6A 98913099 98913657 558 True 313.000000 313 77.9510 3911 4451 1 chr6A.!!$R3 540
13 TraesCS6D01G116000 chr6B 157486057 157489424 3367 True 2748.000000 2748 81.5820 315 3666 1 chr6B.!!$R5 3351
14 TraesCS6D01G116000 chr6B 156651591 156654927 3336 True 2606.000000 2606 80.9640 342 3666 1 chr6B.!!$R2 3324
15 TraesCS6D01G116000 chr6B 156547768 156550970 3202 True 2447.000000 2447 80.6140 421 3617 1 chr6B.!!$R1 3196
16 TraesCS6D01G116000 chr6B 156737820 156741113 3293 True 2326.000000 2326 79.6280 315 3613 1 chr6B.!!$R3 3298
17 TraesCS6D01G116000 chr6B 156525775 156533308 7533 True 2180.500000 2287 78.9860 319 3584 2 chr6B.!!$R6 3265
18 TraesCS6D01G116000 chr6B 157103441 157109510 6069 True 2112.000000 3823 83.7945 315 4387 2 chr6B.!!$R7 4072
19 TraesCS6D01G116000 chr6B 157126786 157127306 520 True 348.000000 348 79.6300 3937 4451 1 chr6B.!!$R4 514
20 TraesCS6D01G116000 chr7B 391677739 391679606 1867 True 466.000000 466 94.1370 10 315 2 chr7B.!!$R1 305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 5305 0.034670 GGGGCACATCTCAGCTTCTT 60.035 55.0 0.0 0.0 0.00 2.52 F
1326 5894 0.179062 GCATCAGTGGCGAGATTCCT 60.179 55.0 0.0 0.0 0.00 3.36 F
2830 11692 0.543749 GCTACCTGATGGCTCCAAGT 59.456 55.0 0.0 0.0 36.63 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 11415 0.787084 AGACAAGGAGACTCCCCAGA 59.213 55.0 18.32 0.0 42.68 3.86 R
2883 11745 0.394565 AAAGAGCGTCAACCTCTGCT 59.605 50.0 0.00 0.0 39.50 4.24 R
4514 21604 1.040646 CCAATGGAGCTACCTCGCTA 58.959 55.0 0.00 0.0 41.08 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 1682 2.851195 ACCTCTGTGTTGCGATTTCTT 58.149 42.857 0.00 0.00 0.00 2.52
140 1703 1.482278 TCGTGGAAATTGTTTTGCGC 58.518 45.000 0.00 0.00 39.47 6.09
142 1705 1.204792 GTGGAAATTGTTTTGCGCGT 58.795 45.000 8.43 0.00 36.07 6.01
143 1706 1.071568 GTGGAAATTGTTTTGCGCGTG 60.072 47.619 8.43 0.00 36.07 5.34
145 1708 1.451651 GGAAATTGTTTTGCGCGTGAG 59.548 47.619 8.43 0.00 0.00 3.51
147 1710 3.293262 GAAATTGTTTTGCGCGTGAGTA 58.707 40.909 8.43 0.00 0.00 2.59
148 1711 2.309898 ATTGTTTTGCGCGTGAGTAC 57.690 45.000 8.43 0.59 0.00 2.73
149 1712 0.305313 TTGTTTTGCGCGTGAGTACC 59.695 50.000 8.43 0.00 0.00 3.34
150 1713 0.531090 TGTTTTGCGCGTGAGTACCT 60.531 50.000 8.43 0.00 0.00 3.08
151 1714 0.584876 GTTTTGCGCGTGAGTACCTT 59.415 50.000 8.43 0.00 0.00 3.50
152 1715 0.863144 TTTTGCGCGTGAGTACCTTC 59.137 50.000 8.43 0.00 0.00 3.46
153 1716 1.279527 TTTGCGCGTGAGTACCTTCG 61.280 55.000 8.43 0.00 0.00 3.79
154 1717 2.126580 GCGCGTGAGTACCTTCGT 60.127 61.111 8.43 0.00 0.00 3.85
156 1719 1.862147 CGCGTGAGTACCTTCGTCG 60.862 63.158 0.00 0.00 0.00 5.12
157 1720 1.499056 GCGTGAGTACCTTCGTCGA 59.501 57.895 0.00 0.00 0.00 4.20
159 1722 1.073964 CGTGAGTACCTTCGTCGAGA 58.926 55.000 0.00 0.00 0.00 4.04
160 1723 1.664659 CGTGAGTACCTTCGTCGAGAT 59.335 52.381 0.00 0.00 0.00 2.75
162 1725 3.427243 GTGAGTACCTTCGTCGAGATTG 58.573 50.000 0.00 0.00 0.00 2.67
163 1726 2.422479 TGAGTACCTTCGTCGAGATTGG 59.578 50.000 0.00 0.00 0.00 3.16
165 1728 2.824341 AGTACCTTCGTCGAGATTGGTT 59.176 45.455 13.61 0.00 37.31 3.67
166 1729 2.833631 ACCTTCGTCGAGATTGGTTT 57.166 45.000 0.00 0.00 34.04 3.27
168 1731 3.064931 ACCTTCGTCGAGATTGGTTTTC 58.935 45.455 0.00 0.00 34.04 2.29
169 1732 3.244112 ACCTTCGTCGAGATTGGTTTTCT 60.244 43.478 0.00 0.00 34.04 2.52
170 1733 3.368236 CCTTCGTCGAGATTGGTTTTCTC 59.632 47.826 0.00 0.00 36.97 2.87
176 1739 3.461946 GAGATTGGTTTTCTCGTGCTG 57.538 47.619 0.00 0.00 31.07 4.41
177 1740 2.154462 AGATTGGTTTTCTCGTGCTGG 58.846 47.619 0.00 0.00 0.00 4.85
178 1741 1.200020 GATTGGTTTTCTCGTGCTGGG 59.800 52.381 0.00 0.00 0.00 4.45
179 1742 1.452145 TTGGTTTTCTCGTGCTGGGC 61.452 55.000 0.00 0.00 0.00 5.36
180 1743 2.626780 GGTTTTCTCGTGCTGGGCC 61.627 63.158 0.00 0.00 0.00 5.80
181 1744 2.668212 TTTTCTCGTGCTGGGCCG 60.668 61.111 0.00 0.00 0.00 6.13
205 1768 3.397849 GGTTCAAACCCTCTACTTCGT 57.602 47.619 0.10 0.00 43.43 3.85
206 1769 3.064931 GGTTCAAACCCTCTACTTCGTG 58.935 50.000 0.10 0.00 43.43 4.35
207 1770 3.493873 GGTTCAAACCCTCTACTTCGTGT 60.494 47.826 0.10 0.00 43.43 4.49
208 1771 4.262164 GGTTCAAACCCTCTACTTCGTGTA 60.262 45.833 0.10 0.00 43.43 2.90
209 1772 4.510038 TCAAACCCTCTACTTCGTGTAC 57.490 45.455 0.00 0.00 0.00 2.90
212 1775 4.715527 AACCCTCTACTTCGTGTACATC 57.284 45.455 0.00 0.00 0.00 3.06
213 1776 2.681848 ACCCTCTACTTCGTGTACATCG 59.318 50.000 0.00 5.16 0.00 3.84
214 1777 2.541178 CCCTCTACTTCGTGTACATCGC 60.541 54.545 0.00 0.00 0.00 4.58
241 1804 1.216710 GCGAGAGGCTACTGTTGCT 59.783 57.895 13.54 0.68 42.56 3.91
242 1805 1.080995 GCGAGAGGCTACTGTTGCTG 61.081 60.000 13.54 1.59 42.56 4.41
243 1806 0.528017 CGAGAGGCTACTGTTGCTGA 59.472 55.000 13.54 0.00 0.00 4.26
244 1807 1.067565 CGAGAGGCTACTGTTGCTGAA 60.068 52.381 13.54 0.00 0.00 3.02
245 1808 2.615869 GAGAGGCTACTGTTGCTGAAG 58.384 52.381 13.54 0.00 0.00 3.02
247 1810 1.002544 GAGGCTACTGTTGCTGAAGGT 59.997 52.381 13.54 0.00 0.00 3.50
248 1811 1.160137 GGCTACTGTTGCTGAAGGTG 58.840 55.000 13.54 0.00 0.00 4.00
249 1812 1.160137 GCTACTGTTGCTGAAGGTGG 58.840 55.000 6.98 0.00 0.00 4.61
251 1814 2.693069 CTACTGTTGCTGAAGGTGGAG 58.307 52.381 0.00 0.00 0.00 3.86
252 1815 0.839946 ACTGTTGCTGAAGGTGGAGT 59.160 50.000 0.00 0.00 0.00 3.85
254 1817 0.546122 TGTTGCTGAAGGTGGAGTGT 59.454 50.000 0.00 0.00 0.00 3.55
255 1818 1.230324 GTTGCTGAAGGTGGAGTGTC 58.770 55.000 0.00 0.00 0.00 3.67
256 1819 0.249868 TTGCTGAAGGTGGAGTGTCG 60.250 55.000 0.00 0.00 0.00 4.35
257 1820 1.367840 GCTGAAGGTGGAGTGTCGT 59.632 57.895 0.00 0.00 0.00 4.34
258 1821 0.946221 GCTGAAGGTGGAGTGTCGTG 60.946 60.000 0.00 0.00 0.00 4.35
262 1825 2.135933 GAAGGTGGAGTGTCGTGAAAG 58.864 52.381 0.00 0.00 0.00 2.62
264 1827 0.106149 GGTGGAGTGTCGTGAAAGGT 59.894 55.000 0.00 0.00 0.00 3.50
265 1828 1.499049 GTGGAGTGTCGTGAAAGGTC 58.501 55.000 0.00 0.00 0.00 3.85
267 1830 0.666577 GGAGTGTCGTGAAAGGTCGG 60.667 60.000 0.00 0.00 0.00 4.79
268 1831 0.666577 GAGTGTCGTGAAAGGTCGGG 60.667 60.000 0.00 0.00 0.00 5.14
269 1832 2.029964 TGTCGTGAAAGGTCGGGC 59.970 61.111 0.00 0.00 0.00 6.13
270 1833 2.741211 GTCGTGAAAGGTCGGGCC 60.741 66.667 0.00 0.00 37.58 5.80
271 1834 4.367023 TCGTGAAAGGTCGGGCCG 62.367 66.667 22.51 22.51 43.70 6.13
274 1837 4.257654 TGAAAGGTCGGGCCGCAA 62.258 61.111 23.83 0.78 43.70 4.85
275 1838 3.733960 GAAAGGTCGGGCCGCAAC 61.734 66.667 23.83 15.70 43.70 4.17
276 1839 4.572571 AAAGGTCGGGCCGCAACA 62.573 61.111 23.83 0.00 43.70 3.33
277 1840 4.572571 AAGGTCGGGCCGCAACAA 62.573 61.111 23.83 0.00 43.70 2.83
287 1850 3.794270 CGCAACAACGGATCGGAT 58.206 55.556 7.35 0.00 0.00 4.18
288 1851 1.636340 CGCAACAACGGATCGGATC 59.364 57.895 9.54 9.54 0.00 3.36
289 1852 0.806102 CGCAACAACGGATCGGATCT 60.806 55.000 16.96 0.00 0.00 2.75
291 1854 1.200483 CAACAACGGATCGGATCTCG 58.800 55.000 16.96 18.77 40.90 4.04
292 1855 0.527817 AACAACGGATCGGATCTCGC 60.528 55.000 21.00 5.93 39.05 5.03
293 1856 1.661821 CAACGGATCGGATCTCGCC 60.662 63.158 21.00 6.19 39.05 5.54
295 1858 1.464376 AACGGATCGGATCTCGCCAT 61.464 55.000 21.00 10.50 39.05 4.40
296 1859 1.153939 CGGATCGGATCTCGCCATC 60.154 63.158 16.96 0.00 39.05 3.51
297 1860 1.866853 CGGATCGGATCTCGCCATCA 61.867 60.000 16.96 0.00 39.05 3.07
298 1861 0.318441 GGATCGGATCTCGCCATCAA 59.682 55.000 16.96 0.00 39.05 2.57
299 1862 1.671261 GGATCGGATCTCGCCATCAAG 60.671 57.143 16.96 0.00 39.05 3.02
301 1864 1.043116 TCGGATCTCGCCATCAAGGT 61.043 55.000 0.00 0.00 40.61 3.50
302 1865 0.179073 CGGATCTCGCCATCAAGGTT 60.179 55.000 0.00 0.00 40.61 3.50
303 1866 1.587547 GGATCTCGCCATCAAGGTTC 58.412 55.000 0.00 0.00 40.61 3.62
305 1868 0.179073 ATCTCGCCATCAAGGTTCGG 60.179 55.000 0.00 0.00 40.61 4.30
306 1869 1.079127 CTCGCCATCAAGGTTCGGT 60.079 57.895 0.00 0.00 40.61 4.69
307 1870 1.079405 TCGCCATCAAGGTTCGGTC 60.079 57.895 0.00 0.00 40.61 4.79
308 1871 2.452813 CGCCATCAAGGTTCGGTCG 61.453 63.158 0.00 0.00 40.61 4.79
309 1872 1.375523 GCCATCAAGGTTCGGTCGT 60.376 57.895 0.00 0.00 40.61 4.34
310 1873 1.359459 GCCATCAAGGTTCGGTCGTC 61.359 60.000 0.00 0.00 40.61 4.20
415 4966 2.039746 CAGTCAGGGGACAACATAACCA 59.960 50.000 0.00 0.00 46.80 3.67
489 5044 5.295292 CCCAACAAGACATACAGCAAGATAG 59.705 44.000 0.00 0.00 0.00 2.08
704 5265 4.295141 TGGGATTGTTACGGATGTCTTT 57.705 40.909 0.00 0.00 0.00 2.52
744 5305 0.034670 GGGGCACATCTCAGCTTCTT 60.035 55.000 0.00 0.00 0.00 2.52
1211 5779 7.550906 ACTCTTCAATGCTACCTTGTTAGAATC 59.449 37.037 0.00 0.00 0.00 2.52
1302 5870 3.769844 TGGGTACTCTTGATCTTGGAGAC 59.230 47.826 13.94 9.08 0.00 3.36
1326 5894 0.179062 GCATCAGTGGCGAGATTCCT 60.179 55.000 0.00 0.00 0.00 3.36
1488 6056 3.303938 TGCCAAGGTCAATTTCTCCAAA 58.696 40.909 0.00 0.00 0.00 3.28
1708 6276 4.130286 AGTGCACTTCAGATACTTAGGC 57.870 45.455 15.25 0.00 0.00 3.93
1769 10613 1.954382 CATGAATGAGACCATGCCAGG 59.046 52.381 0.00 0.00 34.52 4.45
1776 10620 1.142465 GAGACCATGCCAGGTGATGAT 59.858 52.381 1.39 0.00 43.38 2.45
1777 10621 1.133884 AGACCATGCCAGGTGATGATG 60.134 52.381 1.39 0.00 43.38 3.07
1800 10644 4.925646 GGCATTGTTGGTTTTGAGAATCTC 59.074 41.667 2.75 2.75 34.92 2.75
2008 10852 3.206150 CCAACAGCCTTAACGCAGATAT 58.794 45.455 0.00 0.00 0.00 1.63
2101 10951 2.456989 CGTCACTTCAATACCGCGTAT 58.543 47.619 4.92 0.00 0.00 3.06
2498 11348 4.593206 ACCTCTGATCCACTCAAAACTACA 59.407 41.667 0.00 0.00 32.14 2.74
2565 11415 4.571984 GGAAGCATTGCTGTTCTTTTGTTT 59.428 37.500 12.82 0.00 39.62 2.83
2572 11422 2.693074 GCTGTTCTTTTGTTTCTGGGGA 59.307 45.455 0.00 0.00 0.00 4.81
2749 11611 4.213270 TCACTGACATTTTGAAAGCTACGG 59.787 41.667 0.00 0.00 0.00 4.02
2750 11612 3.058224 ACTGACATTTTGAAAGCTACGGC 60.058 43.478 0.00 0.00 39.06 5.68
2751 11613 2.095969 TGACATTTTGAAAGCTACGGCG 60.096 45.455 4.80 4.80 44.37 6.46
2830 11692 0.543749 GCTACCTGATGGCTCCAAGT 59.456 55.000 0.00 0.00 36.63 3.16
2862 11724 3.308438 AAGCTCAATGGTGAAATGTGC 57.692 42.857 0.00 0.00 31.88 4.57
2883 11745 3.054361 GCCTGATGGAAAGGGAGTTTAGA 60.054 47.826 0.00 0.00 35.17 2.10
2895 11757 3.591023 GGAGTTTAGAGCAGAGGTTGAC 58.409 50.000 0.00 0.00 0.00 3.18
3160 12022 8.400947 GTGACATCAAATGCAGTAACATCTTAT 58.599 33.333 0.00 0.00 0.00 1.73
3542 18456 4.430007 CACAATCAATTCATGAGGCCAAG 58.570 43.478 5.01 0.00 42.53 3.61
3557 18471 1.336125 GCCAAGCATCATGGAAGTAGC 59.664 52.381 0.00 0.00 40.56 3.58
3568 18482 0.978146 GGAAGTAGCCTCCTGCCTGA 60.978 60.000 0.00 0.00 42.71 3.86
3570 18484 0.252467 AAGTAGCCTCCTGCCTGACT 60.252 55.000 0.00 0.00 42.71 3.41
3584 18498 3.829026 TGCCTGACTAGTATAGATGCTGG 59.171 47.826 0.00 0.00 42.77 4.85
3600 18518 3.064324 GGCCCGCAGATGCAAAGT 61.064 61.111 5.55 0.00 42.21 2.66
3689 18843 3.879932 AGAGCTACGAGTTTGTTTTGC 57.120 42.857 0.00 0.00 0.00 3.68
3694 18848 4.573201 AGCTACGAGTTTGTTTTGCACTTA 59.427 37.500 0.00 0.00 0.00 2.24
3736 18892 3.716601 CCATTTTGAGCTTTCGTGGTTT 58.283 40.909 0.00 0.00 0.00 3.27
3754 19098 6.861572 CGTGGTTTTTCTTCCTTTAGATTTCC 59.138 38.462 0.00 0.00 0.00 3.13
3758 19102 9.832445 GGTTTTTCTTCCTTTAGATTTCCTTTT 57.168 29.630 0.00 0.00 0.00 2.27
3762 19108 8.879427 TTCTTCCTTTAGATTTCCTTTTAGGG 57.121 34.615 0.00 0.00 35.59 3.53
3827 19734 9.979578 TTCACAAGCATGAAACAAAGTATAAAT 57.020 25.926 0.00 0.00 35.65 1.40
3875 20778 5.860716 GTCAGTGAAAGATTGAAAATGGAGC 59.139 40.000 0.00 0.00 0.00 4.70
3895 20798 2.856222 CCCATTCAAGGGCAGATAGTC 58.144 52.381 0.00 0.00 43.10 2.59
3896 20799 2.173356 CCCATTCAAGGGCAGATAGTCA 59.827 50.000 0.00 0.00 43.10 3.41
3901 20815 6.547141 CCATTCAAGGGCAGATAGTCATTTTA 59.453 38.462 0.00 0.00 0.00 1.52
3907 20831 9.090692 CAAGGGCAGATAGTCATTTTATTTTTG 57.909 33.333 0.00 0.00 0.00 2.44
3967 20902 6.036735 GTGAATTGCCGAATTACTAGCTACAA 59.963 38.462 0.00 0.00 31.58 2.41
3974 20909 6.036735 GCCGAATTACTAGCTACAACAAATGA 59.963 38.462 0.00 0.00 0.00 2.57
4168 21142 2.667199 ACGGGCCTTGCAACGTAC 60.667 61.111 10.67 0.00 40.56 3.67
4173 21147 1.373748 GCCTTGCAACGTACCTCGA 60.374 57.895 0.00 0.00 42.86 4.04
4183 21157 4.828296 TACCTCGACCCTCCGGCC 62.828 72.222 0.00 0.00 0.00 6.13
4191 21165 1.803366 GACCCTCCGGCCTATACACG 61.803 65.000 0.00 0.00 0.00 4.49
4282 21277 0.841289 AAGAAAAGACACCCGGGTCA 59.159 50.000 27.51 0.00 40.29 4.02
4349 21344 4.404654 GAGCACAAAAGGCCGGCG 62.405 66.667 22.54 8.77 0.00 6.46
4365 21360 1.696832 GGCGTTGCGTCAGAGGAATC 61.697 60.000 0.00 0.00 0.00 2.52
4514 21604 1.513158 CTTGGTCAGTCCGATCGCT 59.487 57.895 10.32 0.00 39.52 4.93
4518 21608 1.369448 GTCAGTCCGATCGCTAGCG 60.369 63.158 30.91 30.91 41.35 4.26
4532 21622 1.604185 GCTAGCGAGGTAGCTCCATTG 60.604 57.143 22.46 7.14 45.67 2.82
4533 21623 1.000283 CTAGCGAGGTAGCTCCATTGG 60.000 57.143 16.06 0.00 45.67 3.16
4534 21624 1.889573 GCGAGGTAGCTCCATTGGC 60.890 63.158 16.06 9.39 39.02 4.52
4536 21626 1.040646 CGAGGTAGCTCCATTGGCTA 58.959 55.000 16.06 0.00 40.74 3.93
4537 21627 1.000283 CGAGGTAGCTCCATTGGCTAG 60.000 57.143 16.06 0.00 42.03 3.42
4538 21628 2.320781 GAGGTAGCTCCATTGGCTAGA 58.679 52.381 10.97 0.00 42.03 2.43
4539 21629 2.700897 GAGGTAGCTCCATTGGCTAGAA 59.299 50.000 10.97 0.00 42.03 2.10
4540 21630 2.436173 AGGTAGCTCCATTGGCTAGAAC 59.564 50.000 0.00 0.00 42.03 3.01
4547 21637 3.941483 CTCCATTGGCTAGAACGATTTGT 59.059 43.478 0.00 0.00 0.00 2.83
4548 21638 4.331968 TCCATTGGCTAGAACGATTTGTT 58.668 39.130 0.00 0.00 45.61 2.83
4549 21639 4.155826 TCCATTGGCTAGAACGATTTGTTG 59.844 41.667 0.00 0.00 42.09 3.33
4550 21640 4.155826 CCATTGGCTAGAACGATTTGTTGA 59.844 41.667 0.00 0.00 42.09 3.18
4551 21641 5.163622 CCATTGGCTAGAACGATTTGTTGAT 60.164 40.000 0.00 0.00 42.09 2.57
4552 21642 5.957842 TTGGCTAGAACGATTTGTTGATT 57.042 34.783 0.00 0.00 42.09 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.813596 CCAGTACATGGCCGAAGC 58.186 61.111 0.00 0.00 43.83 3.86
119 1682 2.282820 GCGCAAAACAATTTCCACGAAA 59.717 40.909 0.30 0.00 35.94 3.46
140 1703 1.073964 TCTCGACGAAGGTACTCACG 58.926 55.000 0.00 0.00 38.49 4.35
142 1705 2.422479 CCAATCTCGACGAAGGTACTCA 59.578 50.000 0.00 0.00 38.49 3.41
143 1706 2.422832 ACCAATCTCGACGAAGGTACTC 59.577 50.000 0.00 0.00 38.49 2.59
145 1708 2.935481 ACCAATCTCGACGAAGGTAC 57.065 50.000 0.00 0.00 33.77 3.34
147 1710 2.833631 AAACCAATCTCGACGAAGGT 57.166 45.000 0.00 2.11 36.14 3.50
148 1711 3.326747 AGAAAACCAATCTCGACGAAGG 58.673 45.455 0.00 1.46 0.00 3.46
149 1712 4.569801 GAGAAAACCAATCTCGACGAAG 57.430 45.455 0.00 0.00 34.50 3.79
156 1719 2.160417 CCAGCACGAGAAAACCAATCTC 59.840 50.000 0.00 0.00 39.94 2.75
157 1720 2.154462 CCAGCACGAGAAAACCAATCT 58.846 47.619 0.00 0.00 0.00 2.40
159 1722 1.247567 CCCAGCACGAGAAAACCAAT 58.752 50.000 0.00 0.00 0.00 3.16
160 1723 1.452145 GCCCAGCACGAGAAAACCAA 61.452 55.000 0.00 0.00 0.00 3.67
162 1725 2.626780 GGCCCAGCACGAGAAAACC 61.627 63.158 0.00 0.00 0.00 3.27
163 1726 2.954611 GGCCCAGCACGAGAAAAC 59.045 61.111 0.00 0.00 0.00 2.43
174 1737 2.199652 TTTGAACCTTGCGGCCCAG 61.200 57.895 0.00 0.00 0.00 4.45
175 1738 2.123683 TTTGAACCTTGCGGCCCA 60.124 55.556 0.00 0.00 0.00 5.36
176 1739 2.338620 GTTTGAACCTTGCGGCCC 59.661 61.111 0.00 0.00 0.00 5.80
177 1740 2.338620 GGTTTGAACCTTGCGGCC 59.661 61.111 5.66 0.00 45.75 6.13
182 1745 4.742743 ACGAAGTAGAGGGTTTGAACCTTG 60.743 45.833 12.32 0.00 44.89 3.61
183 1746 3.390311 ACGAAGTAGAGGGTTTGAACCTT 59.610 43.478 12.32 5.04 44.89 3.50
184 1747 2.970640 ACGAAGTAGAGGGTTTGAACCT 59.029 45.455 12.32 0.00 44.89 3.50
185 1748 3.064931 CACGAAGTAGAGGGTTTGAACC 58.935 50.000 4.29 4.29 44.86 3.62
186 1749 3.725490 ACACGAAGTAGAGGGTTTGAAC 58.275 45.455 0.00 0.00 41.61 3.18
187 1750 4.341806 TGTACACGAAGTAGAGGGTTTGAA 59.658 41.667 0.00 0.00 41.61 2.69
188 1751 3.890756 TGTACACGAAGTAGAGGGTTTGA 59.109 43.478 0.00 0.00 41.61 2.69
189 1752 4.247267 TGTACACGAAGTAGAGGGTTTG 57.753 45.455 0.00 0.00 41.61 2.93
190 1753 4.380233 CGATGTACACGAAGTAGAGGGTTT 60.380 45.833 0.00 0.00 41.61 3.27
191 1754 3.128242 CGATGTACACGAAGTAGAGGGTT 59.872 47.826 0.00 0.00 41.61 4.11
193 1756 2.541178 GCGATGTACACGAAGTAGAGGG 60.541 54.545 17.98 0.00 41.61 4.30
194 1757 2.717530 GCGATGTACACGAAGTAGAGG 58.282 52.381 17.98 0.00 41.61 3.69
195 1758 2.222976 ACGCGATGTACACGAAGTAGAG 60.223 50.000 15.93 0.11 41.61 2.43
196 1759 1.733912 ACGCGATGTACACGAAGTAGA 59.266 47.619 15.93 0.00 41.61 2.59
201 1764 2.430146 CGCACGCGATGTACACGAA 61.430 57.895 15.93 0.00 42.83 3.85
203 1766 4.537533 GCGCACGCGATGTACACG 62.538 66.667 15.93 5.57 42.83 4.49
219 1782 4.577246 CAGTAGCCTCTCGCCCGC 62.577 72.222 0.00 0.00 38.78 6.13
221 1784 1.153549 CAACAGTAGCCTCTCGCCC 60.154 63.158 0.00 0.00 38.78 6.13
223 1786 1.080995 CAGCAACAGTAGCCTCTCGC 61.081 60.000 0.00 0.00 37.98 5.03
224 1787 0.528017 TCAGCAACAGTAGCCTCTCG 59.472 55.000 0.00 0.00 0.00 4.04
225 1788 2.615869 CTTCAGCAACAGTAGCCTCTC 58.384 52.381 0.00 0.00 0.00 3.20
227 1790 1.002544 ACCTTCAGCAACAGTAGCCTC 59.997 52.381 0.00 0.00 0.00 4.70
228 1791 1.059913 ACCTTCAGCAACAGTAGCCT 58.940 50.000 0.00 0.00 0.00 4.58
229 1792 1.160137 CACCTTCAGCAACAGTAGCC 58.840 55.000 0.00 0.00 0.00 3.93
230 1793 1.160137 CCACCTTCAGCAACAGTAGC 58.840 55.000 0.00 0.00 0.00 3.58
231 1794 2.037772 ACTCCACCTTCAGCAACAGTAG 59.962 50.000 0.00 0.00 0.00 2.57
233 1796 0.839946 ACTCCACCTTCAGCAACAGT 59.160 50.000 0.00 0.00 0.00 3.55
234 1797 1.233019 CACTCCACCTTCAGCAACAG 58.767 55.000 0.00 0.00 0.00 3.16
235 1798 0.546122 ACACTCCACCTTCAGCAACA 59.454 50.000 0.00 0.00 0.00 3.33
236 1799 1.230324 GACACTCCACCTTCAGCAAC 58.770 55.000 0.00 0.00 0.00 4.17
237 1800 0.249868 CGACACTCCACCTTCAGCAA 60.250 55.000 0.00 0.00 0.00 3.91
238 1801 1.367471 CGACACTCCACCTTCAGCA 59.633 57.895 0.00 0.00 0.00 4.41
239 1802 0.946221 CACGACACTCCACCTTCAGC 60.946 60.000 0.00 0.00 0.00 4.26
241 1804 1.116308 TTCACGACACTCCACCTTCA 58.884 50.000 0.00 0.00 0.00 3.02
242 1805 2.135933 CTTTCACGACACTCCACCTTC 58.864 52.381 0.00 0.00 0.00 3.46
243 1806 1.202651 CCTTTCACGACACTCCACCTT 60.203 52.381 0.00 0.00 0.00 3.50
244 1807 0.393077 CCTTTCACGACACTCCACCT 59.607 55.000 0.00 0.00 0.00 4.00
245 1808 0.106149 ACCTTTCACGACACTCCACC 59.894 55.000 0.00 0.00 0.00 4.61
247 1810 0.031585 CGACCTTTCACGACACTCCA 59.968 55.000 0.00 0.00 0.00 3.86
248 1811 0.666577 CCGACCTTTCACGACACTCC 60.667 60.000 0.00 0.00 0.00 3.85
249 1812 0.666577 CCCGACCTTTCACGACACTC 60.667 60.000 0.00 0.00 0.00 3.51
251 1814 2.315386 GCCCGACCTTTCACGACAC 61.315 63.158 0.00 0.00 0.00 3.67
252 1815 2.029964 GCCCGACCTTTCACGACA 59.970 61.111 0.00 0.00 0.00 4.35
254 1817 4.367023 CGGCCCGACCTTTCACGA 62.367 66.667 0.00 0.00 35.61 4.35
257 1820 4.257654 TTGCGGCCCGACCTTTCA 62.258 61.111 7.68 0.00 35.61 2.69
258 1821 3.733960 GTTGCGGCCCGACCTTTC 61.734 66.667 7.68 0.00 35.61 2.62
270 1833 0.806102 AGATCCGATCCGTTGTTGCG 60.806 55.000 4.67 0.00 0.00 4.85
271 1834 0.931005 GAGATCCGATCCGTTGTTGC 59.069 55.000 4.67 0.00 0.00 4.17
273 1836 0.527817 GCGAGATCCGATCCGTTGTT 60.528 55.000 15.94 0.00 41.76 2.83
274 1837 1.065928 GCGAGATCCGATCCGTTGT 59.934 57.895 15.94 0.00 41.76 3.32
275 1838 1.661821 GGCGAGATCCGATCCGTTG 60.662 63.158 15.94 2.25 41.76 4.10
276 1839 1.464376 ATGGCGAGATCCGATCCGTT 61.464 55.000 15.94 0.00 41.76 4.44
277 1840 1.867919 GATGGCGAGATCCGATCCGT 61.868 60.000 15.94 2.30 41.76 4.69
279 1842 0.318441 TTGATGGCGAGATCCGATCC 59.682 55.000 4.67 1.73 41.76 3.36
280 1843 1.671261 CCTTGATGGCGAGATCCGATC 60.671 57.143 7.64 0.00 41.76 3.69
281 1844 0.319728 CCTTGATGGCGAGATCCGAT 59.680 55.000 7.64 0.00 41.76 4.18
282 1845 1.043116 ACCTTGATGGCGAGATCCGA 61.043 55.000 7.64 0.00 38.95 4.55
283 1846 0.179073 AACCTTGATGGCGAGATCCG 60.179 55.000 0.00 0.00 40.22 4.18
284 1847 1.587547 GAACCTTGATGGCGAGATCC 58.412 55.000 0.00 0.00 40.22 3.36
285 1848 1.212616 CGAACCTTGATGGCGAGATC 58.787 55.000 0.00 0.00 40.22 2.75
286 1849 0.179073 CCGAACCTTGATGGCGAGAT 60.179 55.000 0.00 0.00 40.22 2.75
287 1850 1.218047 CCGAACCTTGATGGCGAGA 59.782 57.895 0.00 0.00 40.22 4.04
288 1851 1.079127 ACCGAACCTTGATGGCGAG 60.079 57.895 0.00 0.00 40.22 5.03
289 1852 1.079405 GACCGAACCTTGATGGCGA 60.079 57.895 0.00 0.00 40.22 5.54
291 1854 1.359459 GACGACCGAACCTTGATGGC 61.359 60.000 0.00 0.00 40.22 4.40
292 1855 0.037697 TGACGACCGAACCTTGATGG 60.038 55.000 0.00 0.00 42.93 3.51
293 1856 1.927174 GATGACGACCGAACCTTGATG 59.073 52.381 0.00 0.00 0.00 3.07
295 1858 0.963225 TGATGACGACCGAACCTTGA 59.037 50.000 0.00 0.00 0.00 3.02
296 1859 1.068474 GTGATGACGACCGAACCTTG 58.932 55.000 0.00 0.00 0.00 3.61
297 1860 0.677288 TGTGATGACGACCGAACCTT 59.323 50.000 0.00 0.00 0.00 3.50
298 1861 0.243907 CTGTGATGACGACCGAACCT 59.756 55.000 0.00 0.00 0.00 3.50
299 1862 0.242825 TCTGTGATGACGACCGAACC 59.757 55.000 0.00 0.00 0.00 3.62
301 1864 1.338655 TGTTCTGTGATGACGACCGAA 59.661 47.619 0.00 0.00 0.00 4.30
302 1865 0.955905 TGTTCTGTGATGACGACCGA 59.044 50.000 0.00 0.00 0.00 4.69
303 1866 1.778334 TTGTTCTGTGATGACGACCG 58.222 50.000 0.00 0.00 0.00 4.79
305 1868 3.120199 CCCATTTGTTCTGTGATGACGAC 60.120 47.826 0.00 0.00 0.00 4.34
306 1869 3.073678 CCCATTTGTTCTGTGATGACGA 58.926 45.455 0.00 0.00 0.00 4.20
307 1870 3.073678 TCCCATTTGTTCTGTGATGACG 58.926 45.455 0.00 0.00 0.00 4.35
308 1871 3.119708 GCTCCCATTTGTTCTGTGATGAC 60.120 47.826 0.00 0.00 0.00 3.06
309 1872 3.084039 GCTCCCATTTGTTCTGTGATGA 58.916 45.455 0.00 0.00 0.00 2.92
310 1873 2.821378 TGCTCCCATTTGTTCTGTGATG 59.179 45.455 0.00 0.00 0.00 3.07
385 4936 1.840635 GTCCCCTGACTGGATAAAGCT 59.159 52.381 0.00 0.00 38.53 3.74
489 5044 0.811281 GCAAGGGAAGGTATGTGCAC 59.189 55.000 10.75 10.75 32.29 4.57
704 5265 3.360867 CTGAAGACTCCTAGAAGCCAGA 58.639 50.000 0.00 0.00 0.00 3.86
744 5305 5.500234 CAGTAATCCAGTGAGATTCCCAAA 58.500 41.667 9.32 0.00 37.62 3.28
1302 5870 0.671472 TCTCGCCACTGATGCTGTTG 60.671 55.000 0.00 0.00 0.00 3.33
1326 5894 8.774546 ATTTCTTGAGATGACCTATAGACTCA 57.225 34.615 0.00 2.01 33.53 3.41
1672 6240 8.109705 TGAAGTGCACTTGTGATATTTGTAAT 57.890 30.769 35.67 6.53 36.11 1.89
1708 6276 3.195825 AGGGTAGTGAGATTCTTGGAACG 59.804 47.826 0.00 0.00 0.00 3.95
1769 10613 3.598019 AACCAACAATGCCATCATCAC 57.402 42.857 0.00 0.00 31.27 3.06
1776 10620 4.344679 AGATTCTCAAAACCAACAATGCCA 59.655 37.500 0.00 0.00 0.00 4.92
1777 10621 4.886579 AGATTCTCAAAACCAACAATGCC 58.113 39.130 0.00 0.00 0.00 4.40
1800 10644 5.942872 CAACTTGTTATTGCTAGAACCTGG 58.057 41.667 3.28 0.00 0.00 4.45
2008 10852 6.927936 GCAGTATTCTCTGATCTTAGCATTGA 59.072 38.462 0.00 0.00 37.61 2.57
2101 10951 5.253330 CAGTACTTTAGGGAAAGCCATTGA 58.747 41.667 0.00 0.00 45.16 2.57
2498 11348 3.645687 TGCAAAAAGGGCCTTCTTATGTT 59.354 39.130 21.20 5.98 0.00 2.71
2565 11415 0.787084 AGACAAGGAGACTCCCCAGA 59.213 55.000 18.32 0.00 42.68 3.86
2572 11422 3.278574 CTCTGATCGAGACAAGGAGACT 58.721 50.000 8.35 0.00 42.64 3.24
2749 11611 2.612212 TGTTCTCCTTGTCAAAGTTCGC 59.388 45.455 0.00 0.00 0.00 4.70
2750 11612 5.424121 AATGTTCTCCTTGTCAAAGTTCG 57.576 39.130 0.00 0.00 0.00 3.95
2751 11613 7.809806 CCAATAATGTTCTCCTTGTCAAAGTTC 59.190 37.037 0.00 0.00 0.00 3.01
2830 11692 4.066490 CCATTGAGCTTTTTGATTGCCAA 58.934 39.130 0.00 0.00 0.00 4.52
2862 11724 4.775236 CTCTAAACTCCCTTTCCATCAGG 58.225 47.826 0.00 0.00 0.00 3.86
2883 11745 0.394565 AAAGAGCGTCAACCTCTGCT 59.605 50.000 0.00 0.00 39.50 4.24
2895 11757 1.001487 TGTTGTGCATTGGAAAGAGCG 60.001 47.619 0.00 0.00 34.01 5.03
3060 11922 0.731417 CTCCTTGCGCAATCTTGAGG 59.269 55.000 25.26 20.02 0.00 3.86
3081 11943 3.560239 GGATATAAGAAAGGCCCTGGCTC 60.560 52.174 8.29 0.00 37.50 4.70
3542 18456 1.419387 AGGAGGCTACTTCCATGATGC 59.581 52.381 0.00 0.00 0.00 3.91
3557 18471 4.374689 TCTATACTAGTCAGGCAGGAGG 57.625 50.000 0.00 0.00 0.00 4.30
3568 18482 2.171840 CGGGCCAGCATCTATACTAGT 58.828 52.381 4.39 0.00 0.00 2.57
3570 18484 0.895530 GCGGGCCAGCATCTATACTA 59.104 55.000 23.91 0.00 37.05 1.82
3584 18498 1.153958 GAACTTTGCATCTGCGGGC 60.154 57.895 0.00 0.00 45.83 6.13
3635 18771 5.874810 AGAAAGTTACATGTACATCGTGCAT 59.125 36.000 5.07 0.00 39.29 3.96
3672 18809 3.334272 AGTGCAAAACAAACTCGTAGC 57.666 42.857 0.00 0.00 0.00 3.58
3689 18843 4.463186 ACCTGTTAGGCTCTGTACTAAGTG 59.537 45.833 0.00 0.00 39.63 3.16
3694 18848 2.028020 GCAACCTGTTAGGCTCTGTACT 60.028 50.000 0.00 0.00 39.63 2.73
3736 18892 9.309224 CCCTAAAAGGAAATCTAAAGGAAGAAA 57.691 33.333 0.00 0.00 37.67 2.52
3754 19098 5.952347 AGAGACCATTTAAAGGCCCTAAAAG 59.048 40.000 10.76 7.27 0.00 2.27
3758 19102 9.799223 ATATATAGAGACCATTTAAAGGCCCTA 57.201 33.333 0.00 0.00 0.00 3.53
3827 19734 3.990092 AGCAAGACTGTCGTTTCACATA 58.010 40.909 1.52 0.00 0.00 2.29
3836 20739 2.033407 CACTGACAAAGCAAGACTGTCG 60.033 50.000 1.52 0.00 41.94 4.35
3841 20744 4.882671 TCTTTCACTGACAAAGCAAGAC 57.117 40.909 0.00 0.00 31.85 3.01
3895 20798 7.775397 AATCGCTGATCCCAAAAATAAAATG 57.225 32.000 0.00 0.00 0.00 2.32
3896 20799 8.791327 AAAATCGCTGATCCCAAAAATAAAAT 57.209 26.923 0.00 0.00 0.00 1.82
3901 20815 6.773976 TCTAAAATCGCTGATCCCAAAAAT 57.226 33.333 0.00 0.00 0.00 1.82
3907 20831 3.945285 TGGTTTCTAAAATCGCTGATCCC 59.055 43.478 0.00 0.00 0.00 3.85
3987 20922 1.127766 TCATTCCATTTGTTCGACGCG 59.872 47.619 3.53 3.53 0.00 6.01
4072 21020 6.490381 ACATTCCTCTCGTGTTCTGCTATATA 59.510 38.462 0.00 0.00 0.00 0.86
4073 21021 5.303078 ACATTCCTCTCGTGTTCTGCTATAT 59.697 40.000 0.00 0.00 0.00 0.86
4074 21022 4.645136 ACATTCCTCTCGTGTTCTGCTATA 59.355 41.667 0.00 0.00 0.00 1.31
4075 21023 3.449018 ACATTCCTCTCGTGTTCTGCTAT 59.551 43.478 0.00 0.00 0.00 2.97
4183 21157 5.731256 CATTCTGATGCGTACGTGTATAG 57.269 43.478 17.90 9.35 0.00 1.31
4328 21323 2.653115 GGCCTTTTGTGCTCAGCC 59.347 61.111 0.00 1.58 0.00 4.85
4349 21344 1.590238 CATCGATTCCTCTGACGCAAC 59.410 52.381 0.00 0.00 0.00 4.17
4462 21526 2.802787 ACATACATCGGCAGCTCTAC 57.197 50.000 0.00 0.00 0.00 2.59
4514 21604 1.040646 CCAATGGAGCTACCTCGCTA 58.959 55.000 0.00 0.00 41.08 4.26
4518 21608 2.320781 TCTAGCCAATGGAGCTACCTC 58.679 52.381 2.05 0.00 41.83 3.85
4519 21609 2.436173 GTTCTAGCCAATGGAGCTACCT 59.564 50.000 2.05 0.00 41.83 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.