AutoCloner

Multiple sequence alignment - TraesCS6D01G114100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G114100	chr6D	100.000	2405	0	0	1	2405	81587223	81589627	0.000000e+00	4442.0
1	TraesCS6D01G114100	chr6D	87.500	264	28	4	1401	1659	44091649	44091386	1.400000e-77	300.0
2	TraesCS6D01G114100	chr6D	86.641	262	31	4	1401	1659	430878012	430878272	1.090000e-73	287.0
3	TraesCS6D01G114100	chr7B	95.150	1670	72	8	1	1663	616422724	616421057	0.000000e+00	2627.0
4	TraesCS6D01G114100	chr7B	87.121	264	29	4	1401	1660	680220510	680220772	6.500000e-76	294.0
5	TraesCS6D01G114100	chr7B	79.817	109	16	4	1686	1793	26694238	26694135	9.220000e-10	75.0
6	TraesCS6D01G114100	chr7B	75.410	122	24	5	1804	1925	294086488	294086603	1.000000e-03	54.7
7	TraesCS6D01G114100	chr7B	75.000	128	26	4	1804	1931	298070177	298070056	1.000000e-03	54.7
8	TraesCS6D01G114100	chr2D	90.995	1377	112	10	7	1378	440627824	440629193	0.000000e+00	1845.0
9	TraesCS6D01G114100	chr5A	86.610	1404	177	8	7	1408	548990832	548992226	0.000000e+00	1541.0
10	TraesCS6D01G114100	chr5A	75.200	125	24	5	1802	1925	250811297	250811415	4.000000e-03	52.8
11	TraesCS6D01G114100	chr1B	85.959	1403	191	5	7	1406	61008734	61007335	0.000000e+00	1495.0
12	TraesCS6D01G114100	chr1B	88.168	262	26	4	1403	1659	15377226	15377487	8.350000e-80	307.0
13	TraesCS6D01G114100	chr5B	83.452	1408	203	18	4	1407	294079403	294080784	0.000000e+00	1282.0
14	TraesCS6D01G114100	chr1D	91.391	906	72	5	507	1408	367851473	367850570	0.000000e+00	1236.0
15	TraesCS6D01G114100	chr1D	86.447	273	32	4	1401	1668	315609186	315609458	6.500000e-76	294.0
16	TraesCS6D01G114100	chr1A	90.503	895	79	5	518	1408	45504223	45503331	0.000000e+00	1177.0
17	TraesCS6D01G114100	chr6A	85.234	1070	149	7	337	1400	85263078	85264144	0.000000e+00	1092.0
18	TraesCS6D01G114100	chr6A	94.007	267	8	3	2146	2405	97987463	97987728	4.820000e-107	398.0
19	TraesCS6D01G114100	chr6A	87.218	266	30	3	1403	1664	22909220	22909485	1.400000e-77	300.0
20	TraesCS6D01G114100	chr6A	74.839	155	30	6	1808	1961	285261388	285261534	7.180000e-06	62.1
21	TraesCS6D01G114100	chr7D	86.478	917	118	5	7	919	577319250	577320164	0.000000e+00	1002.0
22	TraesCS6D01G114100	chr7D	78.801	1368	268	16	45	1398	290541807	290543166	0.000000e+00	900.0
23	TraesCS6D01G114100	chr6B	92.070	454	26	4	1659	2106	156217795	156218244	4.360000e-177	630.0
24	TraesCS6D01G114100	chr6B	91.954	261	19	2	2146	2405	156218908	156219167	4.890000e-97	364.0
25	TraesCS6D01G114100	chr2B	88.077	260	26	4	1403	1658	382088688	382088946	1.080000e-78	303.0
26	TraesCS6D01G114100	chr2B	74.534	161	32	6	1808	1967	514816316	514816164	7.180000e-06	62.1
27	TraesCS6D01G114100	chr3B	86.517	267	26	8	1401	1659	662539318	662539054	3.910000e-73	285.0
28	TraesCS6D01G114100	chr3B	74.843	159	31	6	1808	1965	347493646	347493796	2.000000e-06	63.9
29	TraesCS6D01G114100	chrUn	74.534	161	31	7	1808	1966	120326549	120326701	7.180000e-06	62.1
30	TraesCS6D01G114100	chrUn	74.839	155	30	6	1808	1961	169319872	169319726	7.180000e-06	62.1
31	TraesCS6D01G114100	chrUn	76.230	122	23	4	1804	1925	132621375	132621490	2.580000e-05	60.2
32	TraesCS6D01G114100	chrUn	76.271	118	22	4	1808	1925	149691756	149691867	9.290000e-05	58.4
33	TraesCS6D01G114100	chrUn	73.596	178	35	9	1808	1981	191136525	191136356	9.290000e-05	58.4
34	TraesCS6D01G114100	chr3D	74.839	155	30	6	1808	1961	425737725	425737579	7.180000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G114100	chr6D	81587223	81589627	2404	False	4442	4442	100.000	1	2405	1	chr6D.!!$F1	2404
1	TraesCS6D01G114100	chr7B	616421057	616422724	1667	True	2627	2627	95.150	1	1663	1	chr7B.!!$R3	1662
2	TraesCS6D01G114100	chr2D	440627824	440629193	1369	False	1845	1845	90.995	7	1378	1	chr2D.!!$F1	1371
3	TraesCS6D01G114100	chr5A	548990832	548992226	1394	False	1541	1541	86.610	7	1408	1	chr5A.!!$F2	1401
4	TraesCS6D01G114100	chr1B	61007335	61008734	1399	True	1495	1495	85.959	7	1406	1	chr1B.!!$R1	1399
5	TraesCS6D01G114100	chr5B	294079403	294080784	1381	False	1282	1282	83.452	4	1407	1	chr5B.!!$F1	1403
6	TraesCS6D01G114100	chr1D	367850570	367851473	903	True	1236	1236	91.391	507	1408	1	chr1D.!!$R1	901
7	TraesCS6D01G114100	chr1A	45503331	45504223	892	True	1177	1177	90.503	518	1408	1	chr1A.!!$R1	890
8	TraesCS6D01G114100	chr6A	85263078	85264144	1066	False	1092	1092	85.234	337	1400	1	chr6A.!!$F2	1063
9	TraesCS6D01G114100	chr7D	577319250	577320164	914	False	1002	1002	86.478	7	919	1	chr7D.!!$F2	912
10	TraesCS6D01G114100	chr7D	290541807	290543166	1359	False	900	900	78.801	45	1398	1	chr7D.!!$F1	1353
11	TraesCS6D01G114100	chr6B	156217795	156219167	1372	False	497	630	92.012	1659	2405	2	chr6B.!!$F1	746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
582	594	0.389426	ACAACTTAGCCCGTACGCAG	60.389	55.0	10.49	4.31	0.0	5.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2160	2809	0.461339	TAAGATTGAACGCCCGGAGC	60.461	55.0	0.73	3.42	38.52	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	1.261238	CCTTCGGCTCTGACCCTTCT	61.261	60.000	0.00	0.00	0.00	2.85
145	146	2.882927	TCGAACCTATCATCCAACGG	57.117	50.000	0.00	0.00	0.00	4.44
171	178	1.142936	AAGTACCTTTCCGGTTGGGT	58.857	50.000	16.23	16.23	46.37	4.51
215	222	3.617263	GGCCAGATTAACGCTTATATCCG	59.383	47.826	0.00	0.00	0.00	4.18
575	586	3.248125	TCGTAAACAAACAACTTAGCCCG	59.752	43.478	0.00	0.00	0.00	6.13
582	594	0.389426	ACAACTTAGCCCGTACGCAG	60.389	55.000	10.49	4.31	0.00	5.18
863	876	2.232298	CTCAACCACGGCTCCTCCTC	62.232	65.000	0.00	0.00	0.00	3.71
1103	1120	0.899717	GCCTTCCTTTGCCCATGTGA	60.900	55.000	0.00	0.00	0.00	3.58
1104	1121	1.631405	CCTTCCTTTGCCCATGTGAA	58.369	50.000	0.00	0.00	0.00	3.18
1420	1437	2.165641	CCGTGATGTTAGTCCTGCTACA	59.834	50.000	0.00	0.00	0.00	2.74
1452	1469	1.203313	TCTTGCCCTCTTCTAGGTGGT	60.203	52.381	0.00	0.00	44.90	4.16
1514	1534	1.100510	GCCCGGTTTCCCTCATAAAC	58.899	55.000	0.00	0.00	36.34	2.01
1521	1541	3.273434	GTTTCCCTCATAAACGGGGTAC	58.727	50.000	0.00	0.00	40.99	3.34
1538	1558	5.593968	GGGGTACACTTGTTTAGGTTTTTG	58.406	41.667	0.00	0.00	0.00	2.44
1541	1561	7.143340	GGGTACACTTGTTTAGGTTTTTGATC	58.857	38.462	0.00	0.00	0.00	2.92
1561	1581	5.190132	TGATCCGGTTTCCCTTATAAACTGA	59.810	40.000	0.00	2.72	43.05	3.41
1571	1591	6.489603	TCCCTTATAAACTGAATCAGCCAAA	58.510	36.000	10.62	0.00	34.37	3.28
1632	1652	5.749462	CAATATATTCAGGTGGGGATCCTC	58.251	45.833	12.58	8.60	32.37	3.71
1633	1653	3.663298	ATATTCAGGTGGGGATCCTCT	57.337	47.619	14.22	2.52	32.37	3.69
1706	1727	4.213482	GCTTAGGCCACACTTTATATTCCG	59.787	45.833	5.01	0.00	0.00	4.30
1722	1743	3.619233	TTCCGCAAAGTCTAAACTTGC	57.381	42.857	0.00	0.00	45.07	4.01
1757	1778	8.983702	AAGTAAAATTTGTAGTTGTGTCCCTA	57.016	30.769	0.00	0.00	0.00	3.53
1763	1784	4.202245	TGTAGTTGTGTCCCTATTCAGC	57.798	45.455	0.00	0.00	0.00	4.26
1771	1792	1.840635	GTCCCTATTCAGCAACCCTCT	59.159	52.381	0.00	0.00	0.00	3.69
1791	1812	4.759782	TCTTGGTTCATCTCGATCCTTTC	58.240	43.478	0.00	0.00	34.90	2.62
1796	1817	6.649155	TGGTTCATCTCGATCCTTTCAATTA	58.351	36.000	0.00	0.00	34.90	1.40
1844	1865	7.315142	TCTTTGGTTACATGCAGAAATTGATC	58.685	34.615	0.00	0.00	0.00	2.92
1845	1866	5.233957	TGGTTACATGCAGAAATTGATCG	57.766	39.130	0.00	0.00	0.00	3.69
1846	1867	4.940654	TGGTTACATGCAGAAATTGATCGA	59.059	37.500	0.00	0.00	0.00	3.59
1847	1868	5.589855	TGGTTACATGCAGAAATTGATCGAT	59.410	36.000	0.00	0.00	0.00	3.59
1851	1872	6.446781	ACATGCAGAAATTGATCGATCTTT	57.553	33.333	25.02	17.78	0.00	2.52
1857	1878	8.461222	TGCAGAAATTGATCGATCTTTGTAATT	58.539	29.630	25.02	17.99	0.00	1.40
1896	1917	4.878971	CCAACACCGTCAATAATCATACCA	59.121	41.667	0.00	0.00	0.00	3.25
1915	1936	2.159517	CCAGAGTTGGTTTAGCGATTGC	60.160	50.000	0.00	0.00	39.79	3.56
1938	1959	1.154413	GCGCACCATCAAGTGTTCG	60.154	57.895	0.30	0.00	40.04	3.95
1947	1968	0.599558	TCAAGTGTTCGGGGTAGTCG	59.400	55.000	0.00	0.00	0.00	4.18
1966	1987	2.227388	TCGTGTCGTTAAAGTCTCCTCC	59.773	50.000	0.00	0.00	0.00	4.30
1969	1990	2.886523	TGTCGTTAAAGTCTCCTCCGAA	59.113	45.455	0.00	0.00	0.00	4.30
1981	2006	6.051717	AGTCTCCTCCGAATTCAACATTATG	58.948	40.000	6.22	0.00	0.00	1.90
2015	2040	2.165641	TGTGCCACCTCGTACTTATCAG	59.834	50.000	0.00	0.00	0.00	2.90
2018	2043	3.318275	TGCCACCTCGTACTTATCAGATC	59.682	47.826	0.00	0.00	0.00	2.75
2028	2053	4.679373	ACTTATCAGATCAATGTCGCCT	57.321	40.909	0.00	0.00	0.00	5.52
2106	2131	2.093235	AGGTCTAGAGGCAACATTGAGC	60.093	50.000	0.00	0.00	41.41	4.26
2109	2134	3.620821	GTCTAGAGGCAACATTGAGCTTC	59.379	47.826	0.00	8.92	37.15	3.86
2110	2135	1.446907	AGAGGCAACATTGAGCTTCG	58.553	50.000	10.43	0.00	41.19	3.79
2112	2137	0.607489	AGGCAACATTGAGCTTCGCT	60.607	50.000	0.00	0.00	40.47	4.93
2121	2146	4.299547	AGCTTCGCTCACGGCACA	62.300	61.111	0.00	0.00	41.91	4.57
2122	2147	4.077188	GCTTCGCTCACGGCACAC	62.077	66.667	0.00	0.00	41.91	3.82
2123	2148	2.356313	CTTCGCTCACGGCACACT	60.356	61.111	0.00	0.00	41.91	3.55
2124	2149	2.661537	TTCGCTCACGGCACACTG	60.662	61.111	0.00	0.00	41.91	3.66
2134	2159	3.171987	GCACACTGCCGATGAGTG	58.828	61.111	0.00	0.00	45.39	3.51
2135	2160	3.171987	CACACTGCCGATGAGTGC	58.828	61.111	0.00	0.00	44.01	4.40
2136	2161	1.668793	CACACTGCCGATGAGTGCA	60.669	57.895	0.00	0.00	44.01	4.57
2137	2162	1.071299	ACACTGCCGATGAGTGCAA	59.929	52.632	0.00	0.00	44.01	4.08
2138	2163	1.230635	ACACTGCCGATGAGTGCAAC	61.231	55.000	0.00	0.00	44.01	4.17
2139	2164	1.071299	ACTGCCGATGAGTGCAACA	59.929	52.632	0.00	0.00	41.43	3.33
2140	2165	0.952497	ACTGCCGATGAGTGCAACAG	60.952	55.000	0.00	0.00	41.43	3.16
2141	2166	1.642037	CTGCCGATGAGTGCAACAGG	61.642	60.000	0.00	0.00	41.43	4.00
2143	2168	0.955428	GCCGATGAGTGCAACAGGAA	60.955	55.000	0.00	0.00	41.43	3.36
2144	2169	1.081892	CCGATGAGTGCAACAGGAAG	58.918	55.000	0.00	0.00	41.43	3.46
2160	2809	1.429463	GAAGACGTTAGTGCCAGTGG	58.571	55.000	4.20	4.20	0.00	4.00
2178	2827	1.745489	GCTCCGGGCGTTCAATCTT	60.745	57.895	0.00	0.00	0.00	2.40
2223	2872	3.084786	GCCAAAGTTGCTACTCCTCATT	58.915	45.455	0.07	0.00	31.99	2.57
2234	2883	5.877012	TGCTACTCCTCATTTCATTTCTCAC	59.123	40.000	0.00	0.00	0.00	3.51
2239	2888	3.686241	CCTCATTTCATTTCTCACGAGCA	59.314	43.478	0.00	0.00	0.00	4.26
2257	2906	7.763985	TCACGAGCAAATTCTAATCTGATAACA	59.236	33.333	0.00	0.00	0.00	2.41
2259	2908	7.766278	ACGAGCAAATTCTAATCTGATAACACT	59.234	33.333	0.00	0.00	0.00	3.55
2305	2954	2.125106	GGCCATCACCGGACTGTC	60.125	66.667	9.46	0.00	0.00	3.51
2306	2955	2.125106	GCCATCACCGGACTGTCC	60.125	66.667	16.99	16.99	0.00	4.02
2328	2978	3.924610	GCGAAACGAGCTACTAAAATGG	58.075	45.455	0.00	0.00	0.00	3.16
2340	2990	1.599542	CTAAAATGGAGCTACTGCGGC	59.400	52.381	0.00	0.00	45.42	6.53
2369	3019	2.279517	GTCATAGTCGCTGCCCCG	60.280	66.667	0.00	0.00	0.00	5.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	3.523564	CCAGGTAAATCTGAGGGAAGGAA	59.476	47.826	0.00	0.00	36.93	3.36
171	178	2.034687	GGGAGAGCAGCTTTGCCA	59.965	61.111	17.75	0.00	34.90	4.92
215	222	4.500116	GAGGGCGTCGAGAGTGGC	62.500	72.222	0.00	0.00	0.00	5.01
366	373	3.156288	AGCCTTTTTAGGGGTGAAGAC	57.844	47.619	0.00	0.00	32.93	3.01
575	586	6.198591	GTGAGGACAAAAGATATACTGCGTAC	59.801	42.308	0.00	0.00	0.00	3.67
582	594	7.681939	TTGTTGGTGAGGACAAAAGATATAC	57.318	36.000	0.00	0.00	33.19	1.47
826	839	4.353437	GAACCTGTCGTCGGGCGT	62.353	66.667	7.49	0.00	43.58	5.68
1103	1120	1.478654	GGAGGGACCACACATGTGTTT	60.479	52.381	28.64	18.34	42.83	2.83
1104	1121	0.110486	GGAGGGACCACACATGTGTT	59.890	55.000	28.64	15.90	42.83	3.32
1420	1437	0.761802	GGGCAAGACCTAGCTAGCAT	59.238	55.000	18.83	5.32	39.10	3.79
1461	1478	3.512724	CAGGTAAGAAGGTTACGGAAGGA	59.487	47.826	0.00	0.00	0.00	3.36
1462	1479	3.260128	ACAGGTAAGAAGGTTACGGAAGG	59.740	47.826	0.00	0.00	0.00	3.46
1464	1481	4.961438	AACAGGTAAGAAGGTTACGGAA	57.039	40.909	0.00	0.00	0.00	4.30
1465	1482	4.463891	CCTAACAGGTAAGAAGGTTACGGA	59.536	45.833	0.00	0.00	0.00	4.69
1514	1534	2.845363	ACCTAAACAAGTGTACCCCG	57.155	50.000	0.00	0.00	0.00	5.73
1521	1541	5.219633	CCGGATCAAAAACCTAAACAAGTG	58.780	41.667	0.00	0.00	0.00	3.16
1541	1561	9.276098	GCTGATTCAGTTTATAAGGGAAACCGG	62.276	44.444	14.90	0.00	44.70	5.28
1561	1581	1.897802	CCTCAAAGGCTTTGGCTGATT	59.102	47.619	33.00	0.00	40.98	2.57
1571	1591	0.689623	CCAGAGTCACCTCAAAGGCT	59.310	55.000	0.00	0.00	39.63	4.58
1659	1680	2.969262	TGCTTCGGGGACATATACATCA	59.031	45.455	0.00	0.00	0.00	3.07
1663	1684	2.484264	GCAATGCTTCGGGGACATATAC	59.516	50.000	0.00	0.00	0.00	1.47
1706	1727	7.796958	AATTATTCGCAAGTTTAGACTTTGC	57.203	32.000	0.00	3.71	43.48	3.68
1754	1775	2.648059	CCAAGAGGGTTGCTGAATAGG	58.352	52.381	0.00	0.00	0.00	2.57
1771	1792	4.551702	TGAAAGGATCGAGATGAACCAA	57.448	40.909	0.00	0.00	41.86	3.67
1828	1849	6.127814	ACAAAGATCGATCAATTTCTGCATGT	60.128	34.615	26.47	10.34	0.00	3.21
1844	1865	9.314321	ACACATTCTACCTAATTACAAAGATCG	57.686	33.333	0.00	0.00	0.00	3.69
1915	1936	0.729116	CACTTGATGGTGCGCCTTAG	59.271	55.000	18.96	9.01	35.27	2.18
1925	1946	1.278127	ACTACCCCGAACACTTGATGG	59.722	52.381	0.00	0.00	0.00	3.51
1938	1959	2.029918	ACTTTAACGACACGACTACCCC	60.030	50.000	0.00	0.00	0.00	4.95
1947	1968	2.227388	TCGGAGGAGACTTTAACGACAC	59.773	50.000	0.00	0.00	44.43	3.67
1981	2006	5.971202	CGAGGTGGCACAATATTTTGATAAC	59.029	40.000	20.82	0.00	44.16	1.89
1996	2021	2.730382	TCTGATAAGTACGAGGTGGCA	58.270	47.619	0.00	0.00	0.00	4.92
2028	2053	0.748450	CATTAGTCGGGGAAGGCGTA	59.252	55.000	0.00	0.00	0.00	4.42
2117	2142	3.031964	GCACTCATCGGCAGTGTGC	62.032	63.158	11.21	11.21	45.23	4.57
2118	2143	1.229975	TTGCACTCATCGGCAGTGTG	61.230	55.000	9.94	2.85	42.89	3.82
2120	2145	1.229975	TGTTGCACTCATCGGCAGTG	61.230	55.000	0.00	5.29	43.66	3.66
2121	2146	0.952497	CTGTTGCACTCATCGGCAGT	60.952	55.000	0.00	0.00	41.68	4.40
2122	2147	1.642037	CCTGTTGCACTCATCGGCAG	61.642	60.000	0.00	0.00	41.68	4.85
2123	2148	1.672030	CCTGTTGCACTCATCGGCA	60.672	57.895	0.00	0.00	38.46	5.69
2124	2149	0.955428	TTCCTGTTGCACTCATCGGC	60.955	55.000	0.00	0.00	0.00	5.54
2127	2152	1.728971	CGTCTTCCTGTTGCACTCATC	59.271	52.381	0.00	0.00	0.00	2.92
2129	2154	0.464036	ACGTCTTCCTGTTGCACTCA	59.536	50.000	0.00	0.00	0.00	3.41
2130	2155	1.583054	AACGTCTTCCTGTTGCACTC	58.417	50.000	0.00	0.00	0.00	3.51
2132	2157	2.221055	CACTAACGTCTTCCTGTTGCAC	59.779	50.000	0.00	0.00	0.00	4.57
2133	2158	2.479837	CACTAACGTCTTCCTGTTGCA	58.520	47.619	0.00	0.00	0.00	4.08
2134	2159	1.194772	GCACTAACGTCTTCCTGTTGC	59.805	52.381	0.00	0.00	0.00	4.17
2135	2160	1.798813	GGCACTAACGTCTTCCTGTTG	59.201	52.381	0.00	0.00	0.00	3.33
2136	2161	1.414919	TGGCACTAACGTCTTCCTGTT	59.585	47.619	0.00	0.00	0.00	3.16
2137	2162	1.000955	CTGGCACTAACGTCTTCCTGT	59.999	52.381	0.00	0.00	0.00	4.00
2138	2163	1.000955	ACTGGCACTAACGTCTTCCTG	59.999	52.381	0.00	0.00	0.00	3.86
2139	2164	1.000955	CACTGGCACTAACGTCTTCCT	59.999	52.381	0.00	0.00	0.00	3.36
2140	2165	1.429463	CACTGGCACTAACGTCTTCC	58.571	55.000	0.00	0.00	0.00	3.46
2141	2166	1.429463	CCACTGGCACTAACGTCTTC	58.571	55.000	0.00	0.00	0.00	2.87
2160	2809	0.461339	TAAGATTGAACGCCCGGAGC	60.461	55.000	0.73	3.42	38.52	4.70
2178	2827	1.335132	GGATTGGACGTGGAGGGCTA	61.335	60.000	0.00	0.00	0.00	3.93
2223	2872	5.947228	AGAATTTGCTCGTGAGAAATGAA	57.053	34.783	0.00	0.00	41.32	2.57
2234	2883	8.060679	CAGTGTTATCAGATTAGAATTTGCTCG	58.939	37.037	0.00	0.00	0.00	5.03
2280	2929	2.750237	GGTGATGGCCGGTGGTTC	60.750	66.667	1.90	0.00	0.00	3.62
2305	2954	1.621107	TTTAGTAGCTCGTTTCGCGG	58.379	50.000	6.13	0.00	41.72	6.46
2306	2955	3.541516	CCATTTTAGTAGCTCGTTTCGCG	60.542	47.826	0.00	0.00	43.01	5.87
2311	2960	4.473477	AGCTCCATTTTAGTAGCTCGTT	57.527	40.909	0.00	0.00	41.35	3.85
2314	2964	4.747605	GCAGTAGCTCCATTTTAGTAGCTC	59.252	45.833	0.00	0.00	43.96	4.09
2369	3019	4.849310	TACAGAATGGGCCGCGGC	62.849	66.667	41.63	41.63	43.62	6.53

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.