Multiple sequence alignment - TraesCS6D01G113000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G113000 chr6D 100.000 2822 0 0 385 3206 79821363 79818542 0.000000e+00 5212
1 TraesCS6D01G113000 chr6D 100.000 63 0 0 1 63 79821747 79821685 2.020000e-22 117
2 TraesCS6D01G113000 chr6A 93.536 1810 77 18 652 2431 96453289 96451490 0.000000e+00 2658
3 TraesCS6D01G113000 chr6A 92.111 469 24 11 2429 2893 96451429 96450970 0.000000e+00 649
4 TraesCS6D01G113000 chr6A 86.246 349 29 7 662 1005 96457092 96456758 8.450000e-96 361
5 TraesCS6D01G113000 chr6A 87.097 217 28 0 2988 3204 96450363 96450147 2.470000e-61 246
6 TraesCS6D01G113000 chr6B 89.969 1954 104 42 496 2415 152109528 152107633 0.000000e+00 2438
7 TraesCS6D01G113000 chr6B 89.610 231 24 0 2974 3204 152091735 152091505 8.700000e-76 294
8 TraesCS6D01G113000 chr6B 78.399 537 45 24 2429 2948 152107564 152107082 1.880000e-72 283
9 TraesCS6D01G113000 chr3D 88.362 232 27 0 1310 1541 587608518 587608749 2.440000e-71 279
10 TraesCS6D01G113000 chr3A 86.752 234 28 2 1310 1540 716988324 716988557 1.140000e-64 257
11 TraesCS6D01G113000 chr3B 89.610 154 16 0 1310 1463 784925984 784926137 2.520000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G113000 chr6D 79818542 79821747 3205 True 2664.5 5212 100.0000 1 3206 2 chr6D.!!$R1 3205
1 TraesCS6D01G113000 chr6A 96450147 96457092 6945 True 978.5 2658 89.7475 652 3204 4 chr6A.!!$R1 2552
2 TraesCS6D01G113000 chr6B 152107082 152109528 2446 True 1360.5 2438 84.1840 496 2948 2 chr6B.!!$R2 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.101399 AGACGCCACGAGATCACATC 59.899 55.0 0.00 0.00 0.0 3.06 F
404 405 0.104304 AACACTCAGGTTCGAACGCT 59.896 50.0 21.34 16.18 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 4529 0.754472 GCGTAGGCCATGGTAGGTAA 59.246 55.0 14.67 0.0 0.00 2.85 R
2301 5502 0.036306 ATTGACCGCCGAAAAGAGGT 59.964 50.0 0.00 0.0 40.11 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.963049 GTAAAGAGATTCGTGGAAAGCTAA 57.037 37.500 0.00 0.00 0.00 3.09
25 26 3.863041 AGAGATTCGTGGAAAGCTAACC 58.137 45.455 0.00 0.00 0.00 2.85
26 27 3.260884 AGAGATTCGTGGAAAGCTAACCA 59.739 43.478 7.57 7.57 0.00 3.67
34 35 4.803098 TGGAAAGCTAACCACTACTCTC 57.197 45.455 7.57 0.00 0.00 3.20
35 36 4.157246 TGGAAAGCTAACCACTACTCTCA 58.843 43.478 7.57 0.00 0.00 3.27
36 37 4.591498 TGGAAAGCTAACCACTACTCTCAA 59.409 41.667 7.57 0.00 0.00 3.02
37 38 5.172205 GGAAAGCTAACCACTACTCTCAAG 58.828 45.833 4.50 0.00 0.00 3.02
38 39 5.047235 GGAAAGCTAACCACTACTCTCAAGA 60.047 44.000 4.50 0.00 0.00 3.02
39 40 5.394224 AAGCTAACCACTACTCTCAAGAC 57.606 43.478 0.00 0.00 0.00 3.01
40 41 3.440872 AGCTAACCACTACTCTCAAGACG 59.559 47.826 0.00 0.00 0.00 4.18
42 43 0.889306 ACCACTACTCTCAAGACGCC 59.111 55.000 0.00 0.00 0.00 5.68
43 44 0.888619 CCACTACTCTCAAGACGCCA 59.111 55.000 0.00 0.00 0.00 5.69
44 45 1.402984 CCACTACTCTCAAGACGCCAC 60.403 57.143 0.00 0.00 0.00 5.01
45 46 0.522180 ACTACTCTCAAGACGCCACG 59.478 55.000 0.00 0.00 0.00 4.94
46 47 0.803117 CTACTCTCAAGACGCCACGA 59.197 55.000 0.00 0.00 0.00 4.35
47 48 0.803117 TACTCTCAAGACGCCACGAG 59.197 55.000 0.00 0.00 0.00 4.18
51 52 0.171231 CTCAAGACGCCACGAGATCA 59.829 55.000 0.00 0.00 0.00 2.92
52 53 0.109272 TCAAGACGCCACGAGATCAC 60.109 55.000 0.00 0.00 0.00 3.06
53 54 0.388520 CAAGACGCCACGAGATCACA 60.389 55.000 0.00 0.00 0.00 3.58
54 55 0.532573 AAGACGCCACGAGATCACAT 59.467 50.000 0.00 0.00 0.00 3.21
55 56 0.101399 AGACGCCACGAGATCACATC 59.899 55.000 0.00 0.00 0.00 3.06
57 58 0.179127 ACGCCACGAGATCACATCTG 60.179 55.000 0.00 0.00 40.38 2.90
58 59 0.873312 CGCCACGAGATCACATCTGG 60.873 60.000 0.00 0.00 40.38 3.86
59 60 1.156645 GCCACGAGATCACATCTGGC 61.157 60.000 7.44 7.44 40.38 4.85
62 63 1.408340 CACGAGATCACATCTGGCTCT 59.592 52.381 0.00 0.00 40.38 4.09
403 404 0.507358 GAACACTCAGGTTCGAACGC 59.493 55.000 21.34 14.27 37.96 4.84
404 405 0.104304 AACACTCAGGTTCGAACGCT 59.896 50.000 21.34 16.18 0.00 5.07
405 406 0.956633 ACACTCAGGTTCGAACGCTA 59.043 50.000 21.34 8.35 0.00 4.26
407 408 1.068472 CACTCAGGTTCGAACGCTACT 60.068 52.381 21.34 10.30 0.00 2.57
408 409 1.199558 ACTCAGGTTCGAACGCTACTC 59.800 52.381 21.34 7.01 0.00 2.59
411 412 1.920574 CAGGTTCGAACGCTACTCATG 59.079 52.381 21.34 1.16 0.00 3.07
412 413 1.135083 AGGTTCGAACGCTACTCATGG 60.135 52.381 21.34 0.00 0.00 3.66
414 415 0.892755 TTCGAACGCTACTCATGGGT 59.107 50.000 2.45 2.45 0.00 4.51
416 417 2.304092 TCGAACGCTACTCATGGGTAT 58.696 47.619 5.75 0.00 0.00 2.73
417 418 3.479489 TCGAACGCTACTCATGGGTATA 58.521 45.455 5.75 0.00 0.00 1.47
418 419 3.884693 TCGAACGCTACTCATGGGTATAA 59.115 43.478 5.75 0.00 0.00 0.98
419 420 4.338964 TCGAACGCTACTCATGGGTATAAA 59.661 41.667 5.75 0.00 0.00 1.40
420 421 5.010314 TCGAACGCTACTCATGGGTATAAAT 59.990 40.000 5.75 0.00 0.00 1.40
421 422 5.694910 CGAACGCTACTCATGGGTATAAATT 59.305 40.000 5.75 0.00 0.00 1.82
422 423 6.202188 CGAACGCTACTCATGGGTATAAATTT 59.798 38.462 5.75 0.00 0.00 1.82
423 424 6.861065 ACGCTACTCATGGGTATAAATTTG 57.139 37.500 5.75 0.00 0.00 2.32
424 425 6.354130 ACGCTACTCATGGGTATAAATTTGT 58.646 36.000 5.75 0.00 0.00 2.83
425 426 7.502696 ACGCTACTCATGGGTATAAATTTGTA 58.497 34.615 5.75 0.00 0.00 2.41
426 427 8.154856 ACGCTACTCATGGGTATAAATTTGTAT 58.845 33.333 5.75 0.00 0.00 2.29
427 428 8.656849 CGCTACTCATGGGTATAAATTTGTATC 58.343 37.037 5.75 0.00 0.00 2.24
428 429 8.947115 GCTACTCATGGGTATAAATTTGTATCC 58.053 37.037 15.45 15.45 0.00 2.59
446 447 5.880332 TGTATCCAAATTCTACCAGTTCTGC 59.120 40.000 0.00 0.00 0.00 4.26
449 450 5.324409 TCCAAATTCTACCAGTTCTGCAAT 58.676 37.500 0.00 0.00 0.00 3.56
450 451 5.774690 TCCAAATTCTACCAGTTCTGCAATT 59.225 36.000 0.00 0.00 0.00 2.32
451 452 6.071952 TCCAAATTCTACCAGTTCTGCAATTC 60.072 38.462 0.00 0.00 0.00 2.17
452 453 6.071728 CCAAATTCTACCAGTTCTGCAATTCT 60.072 38.462 0.00 0.00 0.00 2.40
453 454 6.506500 AATTCTACCAGTTCTGCAATTCTG 57.493 37.500 0.00 0.00 0.00 3.02
457 458 1.466167 CCAGTTCTGCAATTCTGGTCG 59.534 52.381 17.33 0.00 41.51 4.79
458 459 1.466167 CAGTTCTGCAATTCTGGTCGG 59.534 52.381 0.00 0.00 0.00 4.79
460 461 0.400213 TTCTGCAATTCTGGTCGGGT 59.600 50.000 0.00 0.00 0.00 5.28
463 464 2.158957 TCTGCAATTCTGGTCGGGTATC 60.159 50.000 0.00 0.00 0.00 2.24
464 465 1.837439 TGCAATTCTGGTCGGGTATCT 59.163 47.619 0.00 0.00 0.00 1.98
465 466 2.213499 GCAATTCTGGTCGGGTATCTG 58.787 52.381 0.00 0.00 0.00 2.90
467 468 3.181469 GCAATTCTGGTCGGGTATCTGTA 60.181 47.826 0.00 0.00 0.00 2.74
468 469 4.503296 GCAATTCTGGTCGGGTATCTGTAT 60.503 45.833 0.00 0.00 0.00 2.29
469 470 4.873746 ATTCTGGTCGGGTATCTGTATG 57.126 45.455 0.00 0.00 0.00 2.39
471 472 0.671796 TGGTCGGGTATCTGTATGCG 59.328 55.000 0.00 0.00 0.00 4.73
472 473 0.672342 GGTCGGGTATCTGTATGCGT 59.328 55.000 0.00 0.00 0.00 5.24
474 475 0.671796 TCGGGTATCTGTATGCGTGG 59.328 55.000 0.00 0.00 0.00 4.94
475 476 0.319555 CGGGTATCTGTATGCGTGGG 60.320 60.000 0.00 0.00 0.00 4.61
476 477 0.756903 GGGTATCTGTATGCGTGGGT 59.243 55.000 0.00 0.00 0.00 4.51
477 478 1.965643 GGGTATCTGTATGCGTGGGTA 59.034 52.381 0.00 0.00 0.00 3.69
478 479 2.366266 GGGTATCTGTATGCGTGGGTAA 59.634 50.000 0.00 0.00 0.00 2.85
479 480 3.181463 GGGTATCTGTATGCGTGGGTAAA 60.181 47.826 0.00 0.00 0.00 2.01
481 482 5.061179 GGTATCTGTATGCGTGGGTAAATT 58.939 41.667 0.00 0.00 0.00 1.82
482 483 5.529800 GGTATCTGTATGCGTGGGTAAATTT 59.470 40.000 0.00 0.00 0.00 1.82
483 484 4.955925 TCTGTATGCGTGGGTAAATTTG 57.044 40.909 0.00 0.00 0.00 2.32
484 485 4.328536 TCTGTATGCGTGGGTAAATTTGT 58.671 39.130 0.00 0.00 0.00 2.83
485 486 4.393680 TCTGTATGCGTGGGTAAATTTGTC 59.606 41.667 0.00 0.00 0.00 3.18
488 489 2.588620 TGCGTGGGTAAATTTGTCCTT 58.411 42.857 0.00 0.00 0.00 3.36
489 490 2.554893 TGCGTGGGTAAATTTGTCCTTC 59.445 45.455 0.00 0.57 0.00 3.46
490 491 2.817844 GCGTGGGTAAATTTGTCCTTCT 59.182 45.455 0.00 0.00 0.00 2.85
491 492 3.254903 GCGTGGGTAAATTTGTCCTTCTT 59.745 43.478 0.00 0.00 0.00 2.52
492 493 4.456566 GCGTGGGTAAATTTGTCCTTCTTA 59.543 41.667 0.00 0.00 0.00 2.10
494 495 5.935789 CGTGGGTAAATTTGTCCTTCTTAGA 59.064 40.000 0.00 0.00 0.00 2.10
505 506 4.202577 TGTCCTTCTTAGAGAGGAGTGTGA 60.203 45.833 11.52 0.00 0.00 3.58
506 507 4.953579 GTCCTTCTTAGAGAGGAGTGTGAT 59.046 45.833 11.52 0.00 0.00 3.06
507 508 4.952957 TCCTTCTTAGAGAGGAGTGTGATG 59.047 45.833 8.40 0.00 0.00 3.07
508 509 4.099266 CCTTCTTAGAGAGGAGTGTGATGG 59.901 50.000 5.03 0.00 0.00 3.51
523 524 3.009723 GTGATGGGGTGTTCTGTATGTG 58.990 50.000 0.00 0.00 0.00 3.21
526 527 1.024579 GGGGTGTTCTGTATGTGCCG 61.025 60.000 0.00 0.00 0.00 5.69
550 551 4.209495 CCCAACGGATTAAAACGGTTTTTG 59.791 41.667 22.44 13.00 35.62 2.44
586 587 9.903682 TCAAAAATTGAGATGACAATTCTCTTC 57.096 29.630 7.42 0.00 45.71 2.87
587 588 9.909644 CAAAAATTGAGATGACAATTCTCTTCT 57.090 29.630 7.42 0.00 45.71 2.85
590 591 9.956640 AAATTGAGATGACAATTCTCTTCTACT 57.043 29.630 7.42 0.00 45.71 2.57
628 639 6.954102 AGGGTTGCCTCTGTTTCTAAAATAAT 59.046 34.615 0.00 0.00 0.00 1.28
687 3844 2.563179 ACTCATTACTCGACAGCACCTT 59.437 45.455 0.00 0.00 0.00 3.50
796 3959 1.603739 GACTCTTTGCCGGGCCTTT 60.604 57.895 17.97 0.00 0.00 3.11
812 3975 0.392193 CTTTCGGCTGCTGGATCACT 60.392 55.000 8.89 0.00 0.00 3.41
818 3981 1.375098 GCTGCTGGATCACTTGCTCC 61.375 60.000 0.00 0.00 0.00 4.70
829 3992 3.672295 CTTGCTCCGCTCCTCACCC 62.672 68.421 0.00 0.00 0.00 4.61
854 4017 3.712881 GCACGCGCGGAGACTTTT 61.713 61.111 35.22 7.19 0.00 2.27
855 4018 2.935955 CACGCGCGGAGACTTTTT 59.064 55.556 35.22 6.31 0.00 1.94
856 4019 1.893168 GCACGCGCGGAGACTTTTTA 61.893 55.000 35.22 0.00 0.00 1.52
857 4020 0.719465 CACGCGCGGAGACTTTTTAT 59.281 50.000 35.22 4.80 0.00 1.40
858 4021 1.921887 CACGCGCGGAGACTTTTTATA 59.078 47.619 35.22 0.00 0.00 0.98
866 4029 6.183360 GCGCGGAGACTTTTTATATATCTTCC 60.183 42.308 8.83 0.00 0.00 3.46
958 4127 1.540580 GCCTCCGTTAATACTCCCAGC 60.541 57.143 0.00 0.00 0.00 4.85
1472 4665 3.112075 CTCGCACGCGTTCCATGT 61.112 61.111 10.22 0.00 40.74 3.21
1944 5137 2.507992 CGCACGAAGAGCCTCCAG 60.508 66.667 0.00 0.00 42.29 3.86
2166 5362 2.661866 GAACAGCAGTGCGACGGT 60.662 61.111 10.00 0.24 0.00 4.83
2242 5438 1.523758 AGCACGGCAAAAGTTAGGAG 58.476 50.000 0.00 0.00 0.00 3.69
2266 5462 0.806868 TCTCTGTCGTCGCCGTTAAT 59.193 50.000 0.00 0.00 35.01 1.40
2269 5465 0.457166 CTGTCGTCGCCGTTAATCCA 60.457 55.000 0.00 0.00 35.01 3.41
2298 5499 2.288518 GCGGTGAATTTAGGGCAAAACA 60.289 45.455 0.00 0.00 0.00 2.83
2299 5500 3.800604 GCGGTGAATTTAGGGCAAAACAA 60.801 43.478 0.00 0.00 0.00 2.83
2300 5501 4.372656 CGGTGAATTTAGGGCAAAACAAA 58.627 39.130 0.00 0.00 0.00 2.83
2301 5502 4.811557 CGGTGAATTTAGGGCAAAACAAAA 59.188 37.500 0.00 0.00 0.00 2.44
2302 5503 5.277106 CGGTGAATTTAGGGCAAAACAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
2322 5523 2.289819 ACCTCTTTTCGGCGGTCAATTA 60.290 45.455 7.21 0.00 0.00 1.40
2323 5524 2.351726 CCTCTTTTCGGCGGTCAATTAG 59.648 50.000 7.21 0.00 0.00 1.73
2423 5626 7.258441 TCAAGAGTGTATAGTACTACGTACGT 58.742 38.462 25.98 25.98 43.05 3.57
2424 5627 7.220875 TCAAGAGTGTATAGTACTACGTACGTG 59.779 40.741 30.25 20.95 43.05 4.49
2425 5628 6.796426 AGAGTGTATAGTACTACGTACGTGA 58.204 40.000 30.25 12.88 43.05 4.35
2426 5629 6.693545 AGAGTGTATAGTACTACGTACGTGAC 59.306 42.308 30.25 22.74 43.05 3.67
2556 5836 9.965824 CAAACTTCATAAATGTAAACAAGGACT 57.034 29.630 0.00 0.00 0.00 3.85
2590 5874 0.945743 GTTTACCACACGGTCGGTCC 60.946 60.000 2.13 0.00 44.71 4.46
2591 5875 1.114722 TTTACCACACGGTCGGTCCT 61.115 55.000 2.13 0.00 44.71 3.85
2593 5877 2.981914 TACCACACGGTCGGTCCTGT 62.982 60.000 2.13 0.00 44.71 4.00
2594 5878 2.049433 CACACGGTCGGTCCTGTC 60.049 66.667 0.00 0.00 0.00 3.51
2595 5879 2.203451 ACACGGTCGGTCCTGTCT 60.203 61.111 0.00 0.00 0.00 3.41
2612 5896 5.011738 TCCTGTCTGAATAGTCGAACCTTTT 59.988 40.000 0.00 0.00 0.00 2.27
2613 5897 5.701290 CCTGTCTGAATAGTCGAACCTTTTT 59.299 40.000 0.00 0.00 0.00 1.94
2621 5905 7.283580 TGAATAGTCGAACCTTTTTCCTTTTCA 59.716 33.333 0.00 0.00 0.00 2.69
2630 5914 4.429108 CTTTTTCCTTTTCAGTTTCGCCA 58.571 39.130 0.00 0.00 0.00 5.69
2634 5918 1.946768 CCTTTTCAGTTTCGCCAGTCA 59.053 47.619 0.00 0.00 0.00 3.41
2649 5933 4.379652 GCCAGTCAAACAAAAATGTGGAT 58.620 39.130 0.00 0.00 0.00 3.41
2704 5988 4.171878 TGATACGGAGGAAGAGATGACT 57.828 45.455 0.00 0.00 0.00 3.41
2716 6000 4.566545 AGAGATGACTGATGACATCGAC 57.433 45.455 10.79 6.82 45.34 4.20
2717 6001 3.950395 AGAGATGACTGATGACATCGACA 59.050 43.478 10.79 11.48 45.34 4.35
2729 6013 4.261801 TGACATCGACATCTGACACTAGA 58.738 43.478 0.00 0.00 0.00 2.43
2750 6035 1.769026 AGCATCTAGAGGTTCTCGCA 58.231 50.000 6.23 0.00 35.36 5.10
2796 6081 1.064758 AGTTGCTCTCACCAAACACCA 60.065 47.619 0.00 0.00 0.00 4.17
2888 6173 1.874872 TCCATTTCGTCCGTTTTGGTC 59.125 47.619 0.00 0.00 39.52 4.02
2899 6184 5.559799 CGTCCGTTTTGGTCCGTTTAAATAA 60.560 40.000 0.00 0.00 39.52 1.40
2900 6185 6.205071 GTCCGTTTTGGTCCGTTTAAATAAA 58.795 36.000 0.00 0.00 39.52 1.40
2901 6186 6.862608 GTCCGTTTTGGTCCGTTTAAATAAAT 59.137 34.615 0.00 0.00 39.52 1.40
2902 6187 7.381948 GTCCGTTTTGGTCCGTTTAAATAAATT 59.618 33.333 0.00 0.00 39.52 1.82
2903 6188 7.594386 TCCGTTTTGGTCCGTTTAAATAAATTC 59.406 33.333 0.00 0.00 39.52 2.17
2905 6190 6.931243 TTTGGTCCGTTTAAATAAATTCGC 57.069 33.333 0.00 0.00 0.00 4.70
2908 6193 5.032220 GGTCCGTTTAAATAAATTCGCCAG 58.968 41.667 0.00 0.00 0.00 4.85
2909 6194 5.163733 GGTCCGTTTAAATAAATTCGCCAGA 60.164 40.000 0.00 0.00 0.00 3.86
2910 6195 6.459161 GGTCCGTTTAAATAAATTCGCCAGAT 60.459 38.462 0.00 0.00 0.00 2.90
2911 6196 6.631636 GTCCGTTTAAATAAATTCGCCAGATC 59.368 38.462 0.00 0.00 0.00 2.75
2912 6197 5.619607 CCGTTTAAATAAATTCGCCAGATCG 59.380 40.000 0.00 0.00 0.00 3.69
2932 6217 1.045911 AAAACCACGGCCCAACATGT 61.046 50.000 0.00 0.00 0.00 3.21
2933 6218 1.743321 AAACCACGGCCCAACATGTG 61.743 55.000 0.00 0.00 0.00 3.21
2951 6239 9.057365 CAACATGTGGACGTAAACATAAAATAC 57.943 33.333 13.55 0.00 35.28 1.89
2958 6246 5.701029 CGTAAACATAAAATACGTCCCGT 57.299 39.130 0.00 0.00 44.35 5.28
2959 6247 5.483213 CGTAAACATAAAATACGTCCCGTG 58.517 41.667 0.00 0.00 41.39 4.94
2961 6249 5.535043 AAACATAAAATACGTCCCGTGTC 57.465 39.130 0.00 0.00 41.39 3.67
2962 6250 3.524541 ACATAAAATACGTCCCGTGTCC 58.475 45.455 0.00 0.00 41.39 4.02
2964 6252 1.015607 AAAATACGTCCCGTGTCCGC 61.016 55.000 0.00 0.00 41.39 5.54
2965 6253 2.840717 AAATACGTCCCGTGTCCGCC 62.841 60.000 0.00 0.00 41.39 6.13
3011 6821 0.836400 GTGGTGGTGAAGGAGGAGGA 60.836 60.000 0.00 0.00 0.00 3.71
3013 6823 1.554583 GGTGGTGAAGGAGGAGGACC 61.555 65.000 0.00 0.00 0.00 4.46
3057 6867 2.110420 TCGGAGCGCGAGGAGATA 59.890 61.111 12.10 0.00 0.00 1.98
3067 6877 1.820090 GCGAGGAGATAGCTAGGTGGT 60.820 57.143 4.27 0.00 0.00 4.16
3081 6891 4.429522 TGGTCTGGCCATGCGCAT 62.430 61.111 19.28 19.28 43.61 4.73
3097 6907 2.898840 ATGCGCTGGCCGAATCTG 60.899 61.111 9.73 0.00 40.02 2.90
3183 6993 4.143333 GCGGAGGAGTGGCGCTTA 62.143 66.667 7.64 0.00 0.00 3.09
3201 7011 3.307242 GCTTAATTTCATCGACGAGCACT 59.693 43.478 3.01 0.00 0.00 4.40
3204 7014 3.503827 ATTTCATCGACGAGCACTGTA 57.496 42.857 3.01 0.00 0.00 2.74
3205 7015 2.257974 TTCATCGACGAGCACTGTAC 57.742 50.000 3.01 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.183360 GGTTAGCTTTCCACGAATCTCTTTAC 60.183 42.308 0.00 0.00 0.00 2.01
2 3 4.695928 GGTTAGCTTTCCACGAATCTCTTT 59.304 41.667 0.00 0.00 0.00 2.52
3 4 4.254492 GGTTAGCTTTCCACGAATCTCTT 58.746 43.478 0.00 0.00 0.00 2.85
5 6 3.371285 GTGGTTAGCTTTCCACGAATCTC 59.629 47.826 19.27 1.56 43.34 2.75
6 7 3.335579 GTGGTTAGCTTTCCACGAATCT 58.664 45.455 19.27 0.00 43.34 2.40
7 8 3.741805 GTGGTTAGCTTTCCACGAATC 57.258 47.619 19.27 0.00 43.34 2.52
13 14 4.157246 TGAGAGTAGTGGTTAGCTTTCCA 58.843 43.478 0.00 0.00 0.00 3.53
14 15 4.803098 TGAGAGTAGTGGTTAGCTTTCC 57.197 45.455 0.00 0.00 0.00 3.13
15 16 5.865013 GTCTTGAGAGTAGTGGTTAGCTTTC 59.135 44.000 0.00 0.00 0.00 2.62
16 17 5.565045 CGTCTTGAGAGTAGTGGTTAGCTTT 60.565 44.000 0.00 0.00 0.00 3.51
18 19 3.440872 CGTCTTGAGAGTAGTGGTTAGCT 59.559 47.826 0.00 0.00 0.00 3.32
19 20 3.760537 CGTCTTGAGAGTAGTGGTTAGC 58.239 50.000 0.00 0.00 0.00 3.09
20 21 3.427773 GGCGTCTTGAGAGTAGTGGTTAG 60.428 52.174 0.00 0.00 0.00 2.34
21 22 2.490903 GGCGTCTTGAGAGTAGTGGTTA 59.509 50.000 0.00 0.00 0.00 2.85
23 24 0.889306 GGCGTCTTGAGAGTAGTGGT 59.111 55.000 0.00 0.00 0.00 4.16
25 26 1.729472 CGTGGCGTCTTGAGAGTAGTG 60.729 57.143 0.00 0.00 0.00 2.74
26 27 0.522180 CGTGGCGTCTTGAGAGTAGT 59.478 55.000 0.00 0.00 0.00 2.73
27 28 0.803117 TCGTGGCGTCTTGAGAGTAG 59.197 55.000 0.00 0.00 0.00 2.57
28 29 0.803117 CTCGTGGCGTCTTGAGAGTA 59.197 55.000 3.40 0.00 0.00 2.59
29 30 0.889638 TCTCGTGGCGTCTTGAGAGT 60.890 55.000 7.54 0.00 32.80 3.24
30 31 0.453793 ATCTCGTGGCGTCTTGAGAG 59.546 55.000 15.13 6.60 40.50 3.20
31 32 0.452184 GATCTCGTGGCGTCTTGAGA 59.548 55.000 12.88 12.88 41.33 3.27
33 34 0.109272 GTGATCTCGTGGCGTCTTGA 60.109 55.000 0.00 0.00 0.00 3.02
34 35 0.388520 TGTGATCTCGTGGCGTCTTG 60.389 55.000 0.00 0.00 0.00 3.02
35 36 0.532573 ATGTGATCTCGTGGCGTCTT 59.467 50.000 0.00 0.00 0.00 3.01
36 37 0.101399 GATGTGATCTCGTGGCGTCT 59.899 55.000 0.00 0.00 0.00 4.18
37 38 0.101399 AGATGTGATCTCGTGGCGTC 59.899 55.000 0.00 0.00 33.42 5.19
38 39 0.179127 CAGATGTGATCTCGTGGCGT 60.179 55.000 0.00 0.00 37.58 5.68
39 40 0.873312 CCAGATGTGATCTCGTGGCG 60.873 60.000 0.00 0.00 37.58 5.69
40 41 1.156645 GCCAGATGTGATCTCGTGGC 61.157 60.000 15.62 15.62 38.36 5.01
42 43 1.408340 AGAGCCAGATGTGATCTCGTG 59.592 52.381 0.00 0.00 37.58 4.35
43 44 1.774110 AGAGCCAGATGTGATCTCGT 58.226 50.000 0.00 0.00 37.58 4.18
384 385 0.507358 GCGTTCGAACCTGAGTGTTC 59.493 55.000 22.07 4.41 40.96 3.18
385 386 0.104304 AGCGTTCGAACCTGAGTGTT 59.896 50.000 22.07 2.56 0.00 3.32
386 387 0.956633 TAGCGTTCGAACCTGAGTGT 59.043 50.000 22.07 3.52 0.00 3.55
387 388 1.068472 AGTAGCGTTCGAACCTGAGTG 60.068 52.381 22.07 8.36 0.00 3.51
388 389 1.199558 GAGTAGCGTTCGAACCTGAGT 59.800 52.381 22.07 9.95 0.00 3.41
389 390 1.199327 TGAGTAGCGTTCGAACCTGAG 59.801 52.381 22.07 9.44 0.00 3.35
393 394 1.278238 CCATGAGTAGCGTTCGAACC 58.722 55.000 22.07 14.55 0.00 3.62
396 397 1.753930 TACCCATGAGTAGCGTTCGA 58.246 50.000 0.00 0.00 0.00 3.71
399 400 6.826741 ACAAATTTATACCCATGAGTAGCGTT 59.173 34.615 0.00 0.00 0.00 4.84
401 402 6.861065 ACAAATTTATACCCATGAGTAGCG 57.139 37.500 0.00 0.00 0.00 4.26
402 403 8.947115 GGATACAAATTTATACCCATGAGTAGC 58.053 37.037 0.00 0.00 0.00 3.58
423 424 5.880332 TGCAGAACTGGTAGAATTTGGATAC 59.120 40.000 3.99 0.00 0.00 2.24
424 425 6.061022 TGCAGAACTGGTAGAATTTGGATA 57.939 37.500 3.99 0.00 0.00 2.59
425 426 4.922206 TGCAGAACTGGTAGAATTTGGAT 58.078 39.130 3.99 0.00 0.00 3.41
426 427 4.365514 TGCAGAACTGGTAGAATTTGGA 57.634 40.909 3.99 0.00 0.00 3.53
427 428 5.649782 ATTGCAGAACTGGTAGAATTTGG 57.350 39.130 3.99 0.00 0.00 3.28
428 429 6.805271 CAGAATTGCAGAACTGGTAGAATTTG 59.195 38.462 3.99 0.00 0.00 2.32
429 430 6.071728 CCAGAATTGCAGAACTGGTAGAATTT 60.072 38.462 19.85 0.00 43.16 1.82
430 431 5.416952 CCAGAATTGCAGAACTGGTAGAATT 59.583 40.000 19.85 0.38 43.16 2.17
438 439 1.466167 CCGACCAGAATTGCAGAACTG 59.534 52.381 8.46 8.46 0.00 3.16
439 440 1.611673 CCCGACCAGAATTGCAGAACT 60.612 52.381 0.00 0.00 0.00 3.01
440 441 0.804989 CCCGACCAGAATTGCAGAAC 59.195 55.000 0.00 0.00 0.00 3.01
441 442 0.400213 ACCCGACCAGAATTGCAGAA 59.600 50.000 0.00 0.00 0.00 3.02
442 443 1.271856 TACCCGACCAGAATTGCAGA 58.728 50.000 0.00 0.00 0.00 4.26
443 444 2.158900 AGATACCCGACCAGAATTGCAG 60.159 50.000 0.00 0.00 0.00 4.41
446 447 3.543680 ACAGATACCCGACCAGAATTG 57.456 47.619 0.00 0.00 0.00 2.32
449 450 2.364324 GCATACAGATACCCGACCAGAA 59.636 50.000 0.00 0.00 0.00 3.02
450 451 1.961394 GCATACAGATACCCGACCAGA 59.039 52.381 0.00 0.00 0.00 3.86
451 452 1.335964 CGCATACAGATACCCGACCAG 60.336 57.143 0.00 0.00 0.00 4.00
452 453 0.671796 CGCATACAGATACCCGACCA 59.328 55.000 0.00 0.00 0.00 4.02
453 454 0.672342 ACGCATACAGATACCCGACC 59.328 55.000 0.00 0.00 0.00 4.79
454 455 1.602165 CCACGCATACAGATACCCGAC 60.602 57.143 0.00 0.00 0.00 4.79
456 457 0.319555 CCCACGCATACAGATACCCG 60.320 60.000 0.00 0.00 0.00 5.28
457 458 0.756903 ACCCACGCATACAGATACCC 59.243 55.000 0.00 0.00 0.00 3.69
458 459 3.738830 TTACCCACGCATACAGATACC 57.261 47.619 0.00 0.00 0.00 2.73
460 461 6.116806 ACAAATTTACCCACGCATACAGATA 58.883 36.000 0.00 0.00 0.00 1.98
463 464 4.438200 GGACAAATTTACCCACGCATACAG 60.438 45.833 0.00 0.00 0.00 2.74
464 465 3.440872 GGACAAATTTACCCACGCATACA 59.559 43.478 0.00 0.00 0.00 2.29
465 466 3.692593 AGGACAAATTTACCCACGCATAC 59.307 43.478 9.77 0.00 0.00 2.39
467 468 2.802719 AGGACAAATTTACCCACGCAT 58.197 42.857 9.77 0.00 0.00 4.73
468 469 2.279935 AGGACAAATTTACCCACGCA 57.720 45.000 9.77 0.00 0.00 5.24
469 470 2.817844 AGAAGGACAAATTTACCCACGC 59.182 45.455 9.77 1.02 0.00 5.34
471 472 7.166167 TCTCTAAGAAGGACAAATTTACCCAC 58.834 38.462 9.77 5.61 0.00 4.61
472 473 7.324388 TCTCTAAGAAGGACAAATTTACCCA 57.676 36.000 9.77 0.00 0.00 4.51
474 475 7.621796 TCCTCTCTAAGAAGGACAAATTTACC 58.378 38.462 5.71 5.71 0.00 2.85
475 476 8.315482 ACTCCTCTCTAAGAAGGACAAATTTAC 58.685 37.037 0.00 0.00 0.00 2.01
476 477 8.314751 CACTCCTCTCTAAGAAGGACAAATTTA 58.685 37.037 0.00 0.00 0.00 1.40
477 478 7.164803 CACTCCTCTCTAAGAAGGACAAATTT 58.835 38.462 0.00 0.00 0.00 1.82
478 479 6.271159 ACACTCCTCTCTAAGAAGGACAAATT 59.729 38.462 0.00 0.00 0.00 1.82
479 480 5.782845 ACACTCCTCTCTAAGAAGGACAAAT 59.217 40.000 0.00 0.00 0.00 2.32
481 482 4.524714 CACACTCCTCTCTAAGAAGGACAA 59.475 45.833 0.00 0.00 0.00 3.18
482 483 4.082845 CACACTCCTCTCTAAGAAGGACA 58.917 47.826 0.00 0.00 0.00 4.02
483 484 4.337145 TCACACTCCTCTCTAAGAAGGAC 58.663 47.826 0.00 0.00 0.00 3.85
484 485 4.659529 TCACACTCCTCTCTAAGAAGGA 57.340 45.455 0.00 0.00 0.00 3.36
485 486 4.099266 CCATCACACTCCTCTCTAAGAAGG 59.901 50.000 0.00 0.00 0.00 3.46
488 489 3.628513 CCCCATCACACTCCTCTCTAAGA 60.629 52.174 0.00 0.00 0.00 2.10
489 490 2.697751 CCCCATCACACTCCTCTCTAAG 59.302 54.545 0.00 0.00 0.00 2.18
490 491 2.044492 ACCCCATCACACTCCTCTCTAA 59.956 50.000 0.00 0.00 0.00 2.10
491 492 1.646447 ACCCCATCACACTCCTCTCTA 59.354 52.381 0.00 0.00 0.00 2.43
492 493 0.415429 ACCCCATCACACTCCTCTCT 59.585 55.000 0.00 0.00 0.00 3.10
494 495 0.178891 ACACCCCATCACACTCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
505 506 1.340991 GGCACATACAGAACACCCCAT 60.341 52.381 0.00 0.00 0.00 4.00
506 507 0.037590 GGCACATACAGAACACCCCA 59.962 55.000 0.00 0.00 0.00 4.96
507 508 1.024579 CGGCACATACAGAACACCCC 61.025 60.000 0.00 0.00 0.00 4.95
508 509 1.644786 GCGGCACATACAGAACACCC 61.645 60.000 0.00 0.00 0.00 4.61
526 527 0.883153 ACCGTTTTAATCCGTTGGGC 59.117 50.000 0.00 0.00 0.00 5.36
536 537 9.204570 TGAAAAATCAGACAAAAACCGTTTTAA 57.795 25.926 9.63 0.00 35.12 1.52
542 543 9.553418 AATTTTTGAAAAATCAGACAAAAACCG 57.447 25.926 15.43 0.00 46.86 4.44
561 562 9.909644 AGAAGAGAATTGTCATCTCAATTTTTG 57.090 29.630 4.63 0.00 44.62 2.44
584 585 9.752961 GCAACCCTTGTTTAATTTAAAGTAGAA 57.247 29.630 1.83 0.00 30.42 2.10
586 587 8.364894 AGGCAACCCTTGTTTAATTTAAAGTAG 58.635 33.333 1.83 3.37 38.74 2.57
587 588 8.252624 AGGCAACCCTTGTTTAATTTAAAGTA 57.747 30.769 1.83 0.00 38.74 2.24
588 589 7.070696 AGAGGCAACCCTTGTTTAATTTAAAGT 59.929 33.333 1.83 0.00 43.12 2.66
589 590 7.384932 CAGAGGCAACCCTTGTTTAATTTAAAG 59.615 37.037 1.83 0.00 43.12 1.85
590 591 7.147637 ACAGAGGCAACCCTTGTTTAATTTAAA 60.148 33.333 0.00 0.00 43.12 1.52
602 604 3.876309 TTAGAAACAGAGGCAACCCTT 57.124 42.857 0.00 0.00 43.12 3.95
656 667 7.148474 GCTGTCGAGTAATGAGTTCCATTTTTA 60.148 37.037 0.00 0.00 42.55 1.52
687 3844 3.452990 TGATACGGAAGAAATGGCTGGTA 59.547 43.478 0.00 0.00 0.00 3.25
796 3959 1.078918 CAAGTGATCCAGCAGCCGA 60.079 57.895 0.00 0.00 0.00 5.54
818 3981 0.390860 CCAAGATAGGGTGAGGAGCG 59.609 60.000 0.00 0.00 0.00 5.03
829 3992 3.630148 CCGCGCGTGCCAAGATAG 61.630 66.667 29.95 4.86 38.08 2.08
848 4011 7.603024 CCGTGGGAGGAAGATATATAAAAAGTC 59.397 40.741 0.00 0.00 0.00 3.01
849 4012 7.450903 CCGTGGGAGGAAGATATATAAAAAGT 58.549 38.462 0.00 0.00 0.00 2.66
850 4013 6.371825 GCCGTGGGAGGAAGATATATAAAAAG 59.628 42.308 0.00 0.00 0.00 2.27
853 4016 4.224370 GGCCGTGGGAGGAAGATATATAAA 59.776 45.833 0.00 0.00 0.00 1.40
854 4017 3.773119 GGCCGTGGGAGGAAGATATATAA 59.227 47.826 0.00 0.00 0.00 0.98
855 4018 3.371965 GGCCGTGGGAGGAAGATATATA 58.628 50.000 0.00 0.00 0.00 0.86
856 4019 2.188817 GGCCGTGGGAGGAAGATATAT 58.811 52.381 0.00 0.00 0.00 0.86
857 4020 1.640917 GGCCGTGGGAGGAAGATATA 58.359 55.000 0.00 0.00 0.00 0.86
858 4021 1.128188 GGGCCGTGGGAGGAAGATAT 61.128 60.000 0.00 0.00 0.00 1.63
958 4127 2.045926 CTCTCTTTGGGTGCGGGG 60.046 66.667 0.00 0.00 0.00 5.73
1039 4208 2.468831 GAGCATGATGACGAGGAGAAC 58.531 52.381 0.00 0.00 0.00 3.01
1336 4529 0.754472 GCGTAGGCCATGGTAGGTAA 59.246 55.000 14.67 0.00 0.00 2.85
1338 4531 3.227250 GCGTAGGCCATGGTAGGT 58.773 61.111 14.67 0.00 0.00 3.08
1470 4663 2.432456 GCGTCGATGCAGTCCACA 60.432 61.111 24.45 0.00 34.15 4.17
1472 4665 3.381983 AGGCGTCGATGCAGTCCA 61.382 61.111 29.46 0.00 36.28 4.02
1605 4798 2.488355 GCCGACGTAGCAGCTACA 59.512 61.111 28.31 0.00 36.83 2.74
1653 4846 2.031163 GTCACTTGCTCTGGCGGT 59.969 61.111 0.00 0.00 42.25 5.68
2242 5438 3.166630 GCGACGACAGAGACGTGC 61.167 66.667 0.00 0.00 43.97 5.34
2266 5462 0.250553 ATTCACCGCCGAAAAGTGGA 60.251 50.000 0.00 0.00 39.99 4.02
2269 5465 2.486592 CCTAAATTCACCGCCGAAAAGT 59.513 45.455 0.00 0.00 0.00 2.66
2298 5499 0.949397 GACCGCCGAAAAGAGGTTTT 59.051 50.000 0.00 0.00 38.65 2.43
2299 5500 0.179040 TGACCGCCGAAAAGAGGTTT 60.179 50.000 0.00 0.00 37.07 3.27
2300 5501 0.179040 TTGACCGCCGAAAAGAGGTT 60.179 50.000 0.00 0.00 37.07 3.50
2301 5502 0.036306 ATTGACCGCCGAAAAGAGGT 59.964 50.000 0.00 0.00 40.11 3.85
2302 5503 1.165270 AATTGACCGCCGAAAAGAGG 58.835 50.000 0.00 0.00 0.00 3.69
2322 5523 4.643334 GGTGTTTCTGTACAAAGTTTCCCT 59.357 41.667 0.00 0.00 0.00 4.20
2323 5524 4.643334 AGGTGTTTCTGTACAAAGTTTCCC 59.357 41.667 0.00 0.00 0.00 3.97
2423 5626 4.282449 TGAAAATGAAGAGAGGGTACGTCA 59.718 41.667 0.00 0.00 46.86 4.35
2424 5627 4.817517 TGAAAATGAAGAGAGGGTACGTC 58.182 43.478 0.00 0.00 44.49 4.34
2425 5628 4.884668 TGAAAATGAAGAGAGGGTACGT 57.115 40.909 0.00 0.00 0.00 3.57
2426 5629 5.419542 TGATGAAAATGAAGAGAGGGTACG 58.580 41.667 0.00 0.00 0.00 3.67
2427 5630 7.172361 GCTATGATGAAAATGAAGAGAGGGTAC 59.828 40.741 0.00 0.00 0.00 3.34
2428 5631 7.071698 AGCTATGATGAAAATGAAGAGAGGGTA 59.928 37.037 0.00 0.00 0.00 3.69
2430 5633 6.297582 AGCTATGATGAAAATGAAGAGAGGG 58.702 40.000 0.00 0.00 0.00 4.30
2431 5634 6.990939 TGAGCTATGATGAAAATGAAGAGAGG 59.009 38.462 0.00 0.00 0.00 3.69
2432 5635 8.610248 ATGAGCTATGATGAAAATGAAGAGAG 57.390 34.615 0.00 0.00 0.00 3.20
2556 5836 8.544597 CGTGTGGTAAACGATGATGATTAATTA 58.455 33.333 0.00 0.00 43.68 1.40
2557 5837 7.406553 CGTGTGGTAAACGATGATGATTAATT 58.593 34.615 0.00 0.00 43.68 1.40
2558 5838 6.018262 CCGTGTGGTAAACGATGATGATTAAT 60.018 38.462 0.00 0.00 43.68 1.40
2559 5839 5.292345 CCGTGTGGTAAACGATGATGATTAA 59.708 40.000 0.00 0.00 43.68 1.40
2590 5874 6.128526 GGAAAAAGGTTCGACTATTCAGACAG 60.129 42.308 0.00 0.00 0.00 3.51
2591 5875 5.699458 GGAAAAAGGTTCGACTATTCAGACA 59.301 40.000 0.00 0.00 0.00 3.41
2593 5877 6.110411 AGGAAAAAGGTTCGACTATTCAGA 57.890 37.500 0.00 0.00 0.00 3.27
2594 5878 6.803154 AAGGAAAAAGGTTCGACTATTCAG 57.197 37.500 0.00 0.00 0.00 3.02
2595 5879 7.283580 TGAAAAGGAAAAAGGTTCGACTATTCA 59.716 33.333 0.00 0.00 0.00 2.57
2612 5896 2.616842 GACTGGCGAAACTGAAAAGGAA 59.383 45.455 0.00 0.00 0.00 3.36
2613 5897 2.218603 GACTGGCGAAACTGAAAAGGA 58.781 47.619 0.00 0.00 0.00 3.36
2621 5905 3.859411 TTTTGTTTGACTGGCGAAACT 57.141 38.095 9.05 0.00 33.92 2.66
2649 5933 4.457603 CACCAAACCACCGATCATTTCTTA 59.542 41.667 0.00 0.00 0.00 2.10
2704 5988 3.445096 AGTGTCAGATGTCGATGTCATCA 59.555 43.478 13.22 0.00 42.63 3.07
2729 6013 3.491342 TGCGAGAACCTCTAGATGCTAT 58.509 45.455 0.00 0.00 0.00 2.97
2810 6095 4.022589 GGACCCTTTTTCTTTTACCCTTCG 60.023 45.833 0.00 0.00 0.00 3.79
2811 6096 4.022589 CGGACCCTTTTTCTTTTACCCTTC 60.023 45.833 0.00 0.00 0.00 3.46
2822 6107 1.232621 CGTGTCCCGGACCCTTTTTC 61.233 60.000 15.24 0.00 0.00 2.29
2888 6173 5.619607 CGATCTGGCGAATTTATTTAAACGG 59.380 40.000 0.00 0.00 0.00 4.44
2902 6187 1.011968 CGTGGTTTTCGATCTGGCGA 61.012 55.000 0.00 0.00 38.72 5.54
2903 6188 1.419922 CGTGGTTTTCGATCTGGCG 59.580 57.895 0.00 0.00 0.00 5.69
2905 6190 1.644786 GGCCGTGGTTTTCGATCTGG 61.645 60.000 0.00 0.00 0.00 3.86
2908 6193 1.238625 TTGGGCCGTGGTTTTCGATC 61.239 55.000 0.00 0.00 0.00 3.69
2909 6194 1.228306 TTGGGCCGTGGTTTTCGAT 60.228 52.632 0.00 0.00 0.00 3.59
2910 6195 2.188161 GTTGGGCCGTGGTTTTCGA 61.188 57.895 0.00 0.00 0.00 3.71
2911 6196 1.801309 ATGTTGGGCCGTGGTTTTCG 61.801 55.000 0.00 0.00 0.00 3.46
2912 6197 0.319469 CATGTTGGGCCGTGGTTTTC 60.319 55.000 0.00 0.00 0.00 2.29
2972 6260 4.357947 GTGACTGTGGAGCGCGGA 62.358 66.667 8.83 0.00 0.00 5.54
2977 6265 2.357517 CACCGGTGACTGTGGAGC 60.358 66.667 31.31 0.00 41.34 4.70
2992 6802 0.836400 TCCTCCTCCTTCACCACCAC 60.836 60.000 0.00 0.00 0.00 4.16
2995 6805 0.836400 TGGTCCTCCTCCTTCACCAC 60.836 60.000 0.00 0.00 31.99 4.16
2996 6806 0.545309 CTGGTCCTCCTCCTTCACCA 60.545 60.000 0.00 0.00 35.76 4.17
3013 6823 3.640257 ATGGCTGCTGCACCTCCTG 62.640 63.158 17.89 2.13 41.91 3.86
3049 6859 3.153919 CAGACCACCTAGCTATCTCCTC 58.846 54.545 0.00 0.00 0.00 3.71
3052 6862 1.616374 GCCAGACCACCTAGCTATCTC 59.384 57.143 0.00 0.00 0.00 2.75
3057 6867 2.122729 TGGCCAGACCACCTAGCT 59.877 61.111 0.00 0.00 46.36 3.32
3080 6890 2.898840 CAGATTCGGCCAGCGCAT 60.899 61.111 11.47 0.00 36.38 4.73
3084 6894 3.567797 GTCGCAGATTCGGCCAGC 61.568 66.667 2.24 0.00 40.67 4.85
3104 6914 4.120331 GCGTGTTGGCCTCCATGC 62.120 66.667 19.18 19.18 36.54 4.06
3176 6986 1.591158 TCGTCGATGAAATTAAGCGCC 59.409 47.619 2.29 0.00 0.00 6.53
3177 6987 2.880456 CTCGTCGATGAAATTAAGCGC 58.120 47.619 8.98 0.00 0.00 5.92
3183 6993 2.688507 ACAGTGCTCGTCGATGAAATT 58.311 42.857 8.98 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.