Multiple sequence alignment - TraesCS6D01G112800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G112800 chr6D 100.000 3512 0 0 1 3512 79622117 79618606 0.000000e+00 6486.0
1 TraesCS6D01G112800 chr6D 98.978 587 6 0 2228 2814 79703142 79702556 0.000000e+00 1051.0
2 TraesCS6D01G112800 chr6D 83.830 1107 118 26 1564 2653 79171266 79170204 0.000000e+00 996.0
3 TraesCS6D01G112800 chr6D 89.222 668 72 0 1570 2237 79704208 79703541 0.000000e+00 835.0
4 TraesCS6D01G112800 chr6D 94.579 535 17 4 2978 3503 79677628 79677097 0.000000e+00 817.0
5 TraesCS6D01G112800 chr6D 84.419 430 33 12 1040 1468 79171602 79171206 3.290000e-105 392.0
6 TraesCS6D01G112800 chr6D 89.219 269 22 6 3242 3507 107953826 107954090 2.610000e-86 329.0
7 TraesCS6D01G112800 chr6D 96.591 176 4 1 2807 2980 79677902 79677727 1.230000e-74 291.0
8 TraesCS6D01G112800 chr6D 85.938 256 25 9 3244 3497 226019527 226019281 2.690000e-66 263.0
9 TraesCS6D01G112800 chr6D 85.057 261 33 6 3246 3503 80474140 80473883 9.670000e-66 261.0
10 TraesCS6D01G112800 chr6D 96.528 144 5 0 1408 1551 79620632 79620489 4.530000e-59 239.0
11 TraesCS6D01G112800 chr6D 96.528 144 5 0 1486 1629 79620710 79620567 4.530000e-59 239.0
12 TraesCS6D01G112800 chr6D 92.381 105 8 0 1408 1512 79620593 79620489 2.180000e-32 150.0
13 TraesCS6D01G112800 chr6D 92.381 105 8 0 1525 1629 79620710 79620606 2.180000e-32 150.0
14 TraesCS6D01G112800 chr6D 94.048 84 5 0 2523 2606 79170231 79170148 1.020000e-25 128.0
15 TraesCS6D01G112800 chr6D 96.970 66 2 0 1408 1473 79620554 79620489 1.030000e-20 111.0
16 TraesCS6D01G112800 chr6D 96.970 66 2 0 1564 1629 79620710 79620645 1.030000e-20 111.0
17 TraesCS6D01G112800 chr6D 93.443 61 4 0 1525 1585 79171266 79171206 1.340000e-14 91.6
18 TraesCS6D01G112800 chr6D 93.220 59 4 0 1447 1505 79171266 79171208 1.740000e-13 87.9
19 TraesCS6D01G112800 chr6D 100.000 28 0 0 2618 2645 79170023 79169996 6.000000e-03 52.8
20 TraesCS6D01G112800 chr6A 90.668 1543 87 17 1 1508 95796832 95795312 0.000000e+00 1999.0
21 TraesCS6D01G112800 chr6A 92.000 1125 62 10 1526 2645 95795411 95794310 0.000000e+00 1554.0
22 TraesCS6D01G112800 chr6A 83.651 1101 115 33 1564 2645 94377182 94376128 0.000000e+00 976.0
23 TraesCS6D01G112800 chr6A 88.605 430 34 10 316 736 13964806 13965229 3.130000e-140 508.0
24 TraesCS6D01G112800 chr6A 80.699 658 67 18 821 1468 94377729 94377122 1.150000e-124 457.0
25 TraesCS6D01G112800 chr6A 92.000 100 8 0 1448 1547 95795411 95795312 1.310000e-29 141.0
26 TraesCS6D01G112800 chr6A 93.548 62 4 0 1408 1469 95795373 95795312 3.730000e-15 93.5
27 TraesCS6D01G112800 chr6B 95.634 1168 44 4 1609 2773 151821342 151820179 0.000000e+00 1868.0
28 TraesCS6D01G112800 chr6B 76.090 757 138 29 1570 2312 151839482 151838755 4.310000e-94 355.0
29 TraesCS6D01G112800 chr6B 89.720 107 9 1 2807 2911 178026638 178026532 6.110000e-28 135.0
30 TraesCS6D01G112800 chr6B 100.000 28 0 0 2953 2980 178026506 178026479 6.000000e-03 52.8
31 TraesCS6D01G112800 chr2D 89.302 430 38 7 316 739 351288794 351288367 1.860000e-147 532.0
32 TraesCS6D01G112800 chr7B 88.152 422 41 7 317 732 60458098 60457680 8.760000e-136 494.0
33 TraesCS6D01G112800 chr7B 92.593 54 4 0 2910 2963 439502609 439502556 1.050000e-10 78.7
34 TraesCS6D01G112800 chr5D 87.529 425 45 6 316 732 341240344 341239920 5.270000e-133 484.0
35 TraesCS6D01G112800 chr5D 83.721 258 35 7 3246 3500 218029609 218029862 1.630000e-58 237.0
36 TraesCS6D01G112800 chr7D 87.204 422 45 7 316 732 611009095 611009512 4.100000e-129 472.0
37 TraesCS6D01G112800 chr7D 85.986 421 45 12 317 731 148238437 148238849 4.160000e-119 438.0
38 TraesCS6D01G112800 chr7D 93.878 49 3 0 2911 2959 562426927 562426879 1.350000e-09 75.0
39 TraesCS6D01G112800 chr2B 86.288 423 49 7 317 732 625495439 625495019 5.350000e-123 451.0
40 TraesCS6D01G112800 chr2B 94.872 39 2 0 31 69 696686138 696686100 1.050000e-05 62.1
41 TraesCS6D01G112800 chr2B 100.000 28 0 0 44 71 30001702 30001729 6.000000e-03 52.8
42 TraesCS6D01G112800 chr4B 85.948 427 48 9 317 732 122566549 122566124 2.490000e-121 446.0
43 TraesCS6D01G112800 chr1D 87.313 268 26 8 3243 3507 439926864 439926602 2.050000e-77 300.0
44 TraesCS6D01G112800 chr1D 85.496 262 32 6 3246 3503 156011985 156011726 5.780000e-68 268.0
45 TraesCS6D01G112800 chr1D 94.444 36 1 1 43 78 355334208 355334242 2.000000e-03 54.7
46 TraesCS6D01G112800 chr3D 87.405 262 26 7 3250 3507 550395158 550394900 9.530000e-76 294.0
47 TraesCS6D01G112800 chr3D 100.000 29 0 0 43 71 412075657 412075685 2.000000e-03 54.7
48 TraesCS6D01G112800 chr2A 85.171 263 32 5 3244 3503 470655870 470656128 2.690000e-66 263.0
49 TraesCS6D01G112800 chr2A 90.741 54 5 0 2910 2963 387038952 387038899 4.860000e-09 73.1
50 TraesCS6D01G112800 chr2A 88.136 59 7 0 2910 2968 771514830 771514888 1.750000e-08 71.3
51 TraesCS6D01G112800 chr2A 89.286 56 4 2 2910 2964 387038944 387038998 6.290000e-08 69.4
52 TraesCS6D01G112800 chr4D 90.909 55 4 1 2911 2964 70112907 70112961 4.860000e-09 73.1
53 TraesCS6D01G112800 chr7A 90.909 55 2 3 2910 2963 27648377 27648429 1.750000e-08 71.3
54 TraesCS6D01G112800 chr7A 90.909 55 2 3 2910 2963 27673013 27673065 1.750000e-08 71.3
55 TraesCS6D01G112800 chr1A 92.683 41 2 1 31 71 462440872 462440833 1.360000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G112800 chr6D 79618606 79622117 3511 True 1069.428571 6486 95.965429 1 3512 7 chr6D.!!$R4 3511
1 TraesCS6D01G112800 chr6D 79702556 79704208 1652 True 943.000000 1051 94.100000 1570 2814 2 chr6D.!!$R6 1244
2 TraesCS6D01G112800 chr6D 79677097 79677902 805 True 554.000000 817 95.585000 2807 3503 2 chr6D.!!$R5 696
3 TraesCS6D01G112800 chr6D 79169996 79171602 1606 True 291.383333 996 91.493333 1040 2653 6 chr6D.!!$R3 1613
4 TraesCS6D01G112800 chr6A 95794310 95796832 2522 True 946.875000 1999 92.054000 1 2645 4 chr6A.!!$R2 2644
5 TraesCS6D01G112800 chr6A 94376128 94377729 1601 True 716.500000 976 82.175000 821 2645 2 chr6A.!!$R1 1824
6 TraesCS6D01G112800 chr6B 151820179 151821342 1163 True 1868.000000 1868 95.634000 1609 2773 1 chr6B.!!$R1 1164
7 TraesCS6D01G112800 chr6B 151838755 151839482 727 True 355.000000 355 76.090000 1570 2312 1 chr6B.!!$R2 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.036875 ACCAGCCCTTCACTAAGTGC 59.963 55.0 0.0 0.0 36.45 4.40 F
1519 1569 0.105593 GCTGATGCGGAGATTGAGGA 59.894 55.0 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2099 0.034186 TTGATCATTTCAGCGGGGCT 60.034 50.000 0.00 0.0 40.77 5.19 R
3026 3845 1.604915 GAGGCCTCCCCAGAACTTC 59.395 63.158 23.19 0.0 35.39 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.800554 CGAACAACCAGGAGCCTT 57.199 55.556 0.00 0.00 0.00 4.35
26 27 1.676967 CAGGAGCCTTGCTTCACCC 60.677 63.158 0.00 0.00 39.88 4.61
80 81 7.775120 TCTTTTATAGGAGTAACGGTTAGTGG 58.225 38.462 12.74 0.00 0.00 4.00
85 86 2.071540 GAGTAACGGTTAGTGGTTGCC 58.928 52.381 12.74 0.00 30.33 4.52
104 105 2.826725 GCCTGGTAGAGTTACTGTCACT 59.173 50.000 0.00 0.00 0.00 3.41
120 121 5.877012 ACTGTCACTAGGCACATTATTCTTG 59.123 40.000 0.00 0.00 0.00 3.02
136 137 7.762588 TTATTCTTGGGTTTTATTTGTCGGA 57.237 32.000 0.00 0.00 0.00 4.55
137 138 6.850752 ATTCTTGGGTTTTATTTGTCGGAT 57.149 33.333 0.00 0.00 0.00 4.18
172 173 5.230182 GCTGTTGGATTTTGGTTTCTAAGG 58.770 41.667 0.00 0.00 0.00 2.69
231 232 0.036875 ACCAGCCCTTCACTAAGTGC 59.963 55.000 0.00 0.00 36.45 4.40
271 272 4.522405 CACAACATTTGTACATGGGAGGAA 59.478 41.667 0.00 0.00 43.23 3.36
290 291 0.475906 ATACATGGAAGGAGGCTGGC 59.524 55.000 0.00 0.00 0.00 4.85
294 295 2.044551 GGAAGGAGGCTGGCAAGG 60.045 66.667 3.38 0.00 0.00 3.61
301 302 0.902531 GAGGCTGGCAAGGTGTAGTA 59.097 55.000 3.38 0.00 0.00 1.82
302 303 1.278127 GAGGCTGGCAAGGTGTAGTAA 59.722 52.381 3.38 0.00 0.00 2.24
303 304 1.702957 AGGCTGGCAAGGTGTAGTAAA 59.297 47.619 3.38 0.00 0.00 2.01
304 305 1.810755 GGCTGGCAAGGTGTAGTAAAC 59.189 52.381 0.00 0.00 0.00 2.01
305 306 2.552373 GGCTGGCAAGGTGTAGTAAACT 60.552 50.000 0.00 0.00 0.00 2.66
306 307 3.307199 GGCTGGCAAGGTGTAGTAAACTA 60.307 47.826 0.00 0.00 0.00 2.24
307 308 3.683340 GCTGGCAAGGTGTAGTAAACTAC 59.317 47.826 12.40 12.40 46.78 2.73
326 327 2.783135 ACACAAGATTGAGAACGGCAT 58.217 42.857 0.00 0.00 0.00 4.40
339 340 2.491621 GGCATTTTGGAGCTCGGC 59.508 61.111 7.83 0.89 0.00 5.54
342 343 1.997928 GCATTTTGGAGCTCGGCCTC 61.998 60.000 7.83 0.00 0.00 4.70
343 344 0.677731 CATTTTGGAGCTCGGCCTCA 60.678 55.000 7.83 0.00 33.47 3.86
344 345 0.257039 ATTTTGGAGCTCGGCCTCAT 59.743 50.000 7.83 0.00 33.47 2.90
345 346 0.677731 TTTTGGAGCTCGGCCTCATG 60.678 55.000 7.83 0.00 33.47 3.07
347 348 3.157252 GGAGCTCGGCCTCATGGA 61.157 66.667 7.83 0.00 33.47 3.41
348 349 2.420890 GAGCTCGGCCTCATGGAG 59.579 66.667 0.00 0.00 34.57 3.86
391 392 9.757227 AATTCGAAATTCATACTTTTGGTTTCA 57.243 25.926 0.00 0.00 0.00 2.69
441 443 2.938451 ACAAGGATGTGATGTGTATGCG 59.062 45.455 0.00 0.00 38.69 4.73
442 444 2.938451 CAAGGATGTGATGTGTATGCGT 59.062 45.455 0.00 0.00 0.00 5.24
443 445 2.554142 AGGATGTGATGTGTATGCGTG 58.446 47.619 0.00 0.00 0.00 5.34
453 455 6.018542 TGATGTGTATGCGTGTAAAATTTCG 58.981 36.000 0.00 0.00 0.00 3.46
498 500 7.846644 TGATCTGTGCAAAAAGAACAAATTT 57.153 28.000 0.00 0.00 34.61 1.82
501 503 9.801714 GATCTGTGCAAAAAGAACAAATTTATG 57.198 29.630 0.00 0.00 34.61 1.90
513 515 9.971922 AAGAACAAATTTATGGACTTTTGAGAG 57.028 29.630 0.00 0.00 34.13 3.20
516 518 8.477419 ACAAATTTATGGACTTTTGAGAGGAA 57.523 30.769 0.00 0.00 34.13 3.36
541 543 8.978874 ATAATATCATGTGTTAAAGAGCCACA 57.021 30.769 0.00 0.00 42.70 4.17
550 552 6.072175 TGTGTTAAAGAGCCACATATTTGTCC 60.072 38.462 0.00 0.00 34.37 4.02
559 562 4.798924 GCCACATATTTGTCCTTTTGCACA 60.799 41.667 0.00 0.00 32.34 4.57
577 580 4.277174 TGCACAACCTTCATTTCAACGTAT 59.723 37.500 0.00 0.00 0.00 3.06
621 624 5.997129 CACATGTGTGTTATGCCTCCATATA 59.003 40.000 18.03 0.00 40.96 0.86
717 720 1.963679 CTCTATGGAGGCCGAGCTC 59.036 63.158 2.73 2.73 36.03 4.09
718 721 1.531739 CTCTATGGAGGCCGAGCTCC 61.532 65.000 8.47 0.00 40.05 4.70
746 749 6.331061 AGCAAATTTCTCAGAAGATTGCATC 58.669 36.000 27.62 10.16 43.09 3.91
748 751 6.034683 GCAAATTTCTCAGAAGATTGCATCAC 59.965 38.462 23.95 4.64 41.50 3.06
793 822 7.639039 TGAAACACAGTAGATCAACATTTGAC 58.361 34.615 0.00 0.00 43.48 3.18
794 823 6.560253 AACACAGTAGATCAACATTTGACC 57.440 37.500 0.00 0.00 43.48 4.02
795 824 5.003804 ACACAGTAGATCAACATTTGACCC 58.996 41.667 0.00 0.00 43.48 4.46
811 840 2.637872 TGACCCGAGTCTCCTCATTTTT 59.362 45.455 0.00 0.00 43.91 1.94
924 970 2.520260 GCCATGGCCTGATCCCAC 60.520 66.667 27.24 0.00 34.68 4.61
925 971 3.065787 GCCATGGCCTGATCCCACT 62.066 63.158 27.24 0.00 34.68 4.00
926 972 1.616921 CCATGGCCTGATCCCACTT 59.383 57.895 3.32 0.00 34.68 3.16
927 973 0.466922 CCATGGCCTGATCCCACTTC 60.467 60.000 3.32 0.00 34.68 3.01
928 974 0.466922 CATGGCCTGATCCCACTTCC 60.467 60.000 3.32 0.00 34.68 3.46
929 975 1.987807 ATGGCCTGATCCCACTTCCG 61.988 60.000 3.32 0.00 34.68 4.30
930 976 2.367202 GGCCTGATCCCACTTCCGA 61.367 63.158 0.00 0.00 0.00 4.55
931 977 1.153349 GCCTGATCCCACTTCCGAC 60.153 63.158 0.00 0.00 0.00 4.79
1059 1109 3.306989 GGATTCGGCATCAGGATCACATA 60.307 47.826 0.00 0.00 32.79 2.29
1134 1184 0.530870 GGCCGAAGAGATTTCCTCCG 60.531 60.000 0.00 0.00 42.97 4.63
1206 1256 2.497770 CCACCTTACCTACGGCGG 59.502 66.667 13.24 0.00 0.00 6.13
1210 1260 0.817654 ACCTTACCTACGGCGGTAAC 59.182 55.000 13.24 0.00 42.88 2.50
1239 1289 6.120507 AGTATGCTCTTCTGAAAAGGAAGT 57.879 37.500 0.00 0.00 40.50 3.01
1436 1486 0.175302 CTCAGGCTGACGCAGAGATT 59.825 55.000 14.43 0.00 40.28 2.40
1473 1523 4.031061 CTCAGGCTGAGGCAGAGA 57.969 61.111 32.31 8.84 40.71 3.10
1474 1524 2.518772 CTCAGGCTGAGGCAGAGAT 58.481 57.895 32.31 0.00 40.71 2.75
1475 1525 0.831966 CTCAGGCTGAGGCAGAGATT 59.168 55.000 32.31 0.00 40.71 2.40
1476 1526 2.037901 CTCAGGCTGAGGCAGAGATTA 58.962 52.381 32.31 0.23 40.71 1.75
1477 1527 2.433604 CTCAGGCTGAGGCAGAGATTAA 59.566 50.000 32.31 0.02 40.71 1.40
1478 1528 2.433604 TCAGGCTGAGGCAGAGATTAAG 59.566 50.000 14.43 0.00 40.87 1.85
1479 1529 1.767681 AGGCTGAGGCAGAGATTAAGG 59.232 52.381 9.23 0.00 40.87 2.69
1480 1530 1.765314 GGCTGAGGCAGAGATTAAGGA 59.235 52.381 0.00 0.00 40.87 3.36
1481 1531 2.224257 GGCTGAGGCAGAGATTAAGGAG 60.224 54.545 0.00 0.00 40.87 3.69
1482 1532 2.806382 GCTGAGGCAGAGATTAAGGAGC 60.806 54.545 0.00 0.00 38.54 4.70
1483 1533 2.433604 CTGAGGCAGAGATTAAGGAGCA 59.566 50.000 0.00 0.00 32.44 4.26
1484 1534 3.044156 TGAGGCAGAGATTAAGGAGCAT 58.956 45.455 0.00 0.00 0.00 3.79
1485 1535 3.181457 TGAGGCAGAGATTAAGGAGCATG 60.181 47.826 0.00 0.00 0.00 4.06
1486 1536 2.776536 AGGCAGAGATTAAGGAGCATGT 59.223 45.455 0.00 0.00 0.00 3.21
1487 1537 3.201708 AGGCAGAGATTAAGGAGCATGTT 59.798 43.478 0.00 0.00 0.00 2.71
1488 1538 3.950395 GGCAGAGATTAAGGAGCATGTTT 59.050 43.478 0.00 0.00 0.00 2.83
1489 1539 4.036144 GGCAGAGATTAAGGAGCATGTTTC 59.964 45.833 0.00 0.00 0.00 2.78
1490 1540 4.880696 GCAGAGATTAAGGAGCATGTTTCT 59.119 41.667 0.00 0.00 0.00 2.52
1491 1541 5.220815 GCAGAGATTAAGGAGCATGTTTCTG 60.221 44.000 0.00 0.00 33.36 3.02
1492 1542 6.111382 CAGAGATTAAGGAGCATGTTTCTGA 58.889 40.000 0.00 0.00 32.25 3.27
1493 1543 6.258287 CAGAGATTAAGGAGCATGTTTCTGAG 59.742 42.308 0.00 0.00 32.25 3.35
1494 1544 4.880696 AGATTAAGGAGCATGTTTCTGAGC 59.119 41.667 0.00 0.00 0.00 4.26
1495 1545 1.831580 AAGGAGCATGTTTCTGAGCC 58.168 50.000 0.00 0.00 0.00 4.70
1496 1546 0.990374 AGGAGCATGTTTCTGAGCCT 59.010 50.000 0.00 0.00 0.00 4.58
1497 1547 1.065564 AGGAGCATGTTTCTGAGCCTC 60.066 52.381 0.00 0.00 0.00 4.70
1498 1548 1.339438 GGAGCATGTTTCTGAGCCTCA 60.339 52.381 0.00 0.00 0.00 3.86
1499 1549 2.008329 GAGCATGTTTCTGAGCCTCAG 58.992 52.381 15.79 15.79 45.59 3.35
1500 1550 1.093159 GCATGTTTCTGAGCCTCAGG 58.907 55.000 21.14 5.53 44.39 3.86
1510 1560 4.166888 GCCTCAGGCTGATGCGGA 62.167 66.667 25.31 0.04 46.69 5.54
1511 1561 2.108566 CCTCAGGCTGATGCGGAG 59.891 66.667 19.11 4.86 40.82 4.63
1512 1562 2.429767 CCTCAGGCTGATGCGGAGA 61.430 63.158 19.11 0.00 41.05 3.71
1513 1563 1.747145 CTCAGGCTGATGCGGAGAT 59.253 57.895 19.11 0.00 41.05 2.75
1514 1564 0.106335 CTCAGGCTGATGCGGAGATT 59.894 55.000 19.11 0.00 41.05 2.40
1515 1565 0.179065 TCAGGCTGATGCGGAGATTG 60.179 55.000 14.43 0.00 40.82 2.67
1516 1566 0.179065 CAGGCTGATGCGGAGATTGA 60.179 55.000 9.42 0.00 40.82 2.57
1517 1567 0.106335 AGGCTGATGCGGAGATTGAG 59.894 55.000 0.00 0.00 40.82 3.02
1518 1568 0.883814 GGCTGATGCGGAGATTGAGG 60.884 60.000 0.00 0.00 40.82 3.86
1519 1569 0.105593 GCTGATGCGGAGATTGAGGA 59.894 55.000 0.00 0.00 0.00 3.71
1520 1570 1.873069 GCTGATGCGGAGATTGAGGAG 60.873 57.143 0.00 0.00 0.00 3.69
1521 1571 0.105593 TGATGCGGAGATTGAGGAGC 59.894 55.000 0.00 0.00 0.00 4.70
1522 1572 0.602372 GATGCGGAGATTGAGGAGCC 60.602 60.000 0.00 0.00 0.00 4.70
1523 1573 1.053264 ATGCGGAGATTGAGGAGCCT 61.053 55.000 0.00 0.00 0.00 4.58
1524 1574 1.227497 GCGGAGATTGAGGAGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
1525 1575 1.965754 GCGGAGATTGAGGAGCCTGT 61.966 60.000 0.00 0.00 0.00 4.00
1526 1576 0.539051 CGGAGATTGAGGAGCCTGTT 59.461 55.000 0.00 0.00 0.00 3.16
1527 1577 1.065854 CGGAGATTGAGGAGCCTGTTT 60.066 52.381 0.00 0.00 0.00 2.83
1528 1578 2.637947 GGAGATTGAGGAGCCTGTTTC 58.362 52.381 0.00 0.00 0.00 2.78
1529 1579 2.238395 GGAGATTGAGGAGCCTGTTTCT 59.762 50.000 0.00 0.00 0.00 2.52
1530 1580 3.269178 GAGATTGAGGAGCCTGTTTCTG 58.731 50.000 0.00 0.00 0.00 3.02
1531 1581 2.909006 AGATTGAGGAGCCTGTTTCTGA 59.091 45.455 0.00 0.00 0.00 3.27
1532 1582 2.847327 TTGAGGAGCCTGTTTCTGAG 57.153 50.000 0.00 0.00 0.00 3.35
1533 1583 0.322975 TGAGGAGCCTGTTTCTGAGC 59.677 55.000 0.00 0.00 0.00 4.26
1534 1584 0.392327 GAGGAGCCTGTTTCTGAGCC 60.392 60.000 0.00 0.00 0.00 4.70
1535 1585 0.839853 AGGAGCCTGTTTCTGAGCCT 60.840 55.000 0.00 0.00 0.00 4.58
1536 1586 0.392327 GGAGCCTGTTTCTGAGCCTC 60.392 60.000 0.00 0.00 0.00 4.70
1537 1587 0.322975 GAGCCTGTTTCTGAGCCTCA 59.677 55.000 0.00 0.00 0.00 3.86
1538 1588 0.324285 AGCCTGTTTCTGAGCCTCAG 59.676 55.000 15.79 15.79 45.59 3.35
1539 1589 0.676151 GCCTGTTTCTGAGCCTCAGG 60.676 60.000 21.14 6.47 44.39 3.86
1551 1601 4.031061 CTCAGGCTGAGGCAGAGA 57.969 61.111 32.31 8.84 40.71 3.10
1552 1602 2.518772 CTCAGGCTGAGGCAGAGAT 58.481 57.895 32.31 0.00 40.71 2.75
1553 1603 0.831966 CTCAGGCTGAGGCAGAGATT 59.168 55.000 32.31 0.00 40.71 2.40
1554 1604 2.037901 CTCAGGCTGAGGCAGAGATTA 58.962 52.381 32.31 0.23 40.71 1.75
1555 1605 2.433604 CTCAGGCTGAGGCAGAGATTAA 59.566 50.000 32.31 0.02 40.71 1.40
1556 1606 2.433604 TCAGGCTGAGGCAGAGATTAAG 59.566 50.000 14.43 0.00 40.87 1.85
1557 1607 2.433604 CAGGCTGAGGCAGAGATTAAGA 59.566 50.000 9.42 0.00 40.87 2.10
1558 1608 3.110705 AGGCTGAGGCAGAGATTAAGAA 58.889 45.455 9.23 0.00 40.87 2.52
1559 1609 3.134442 AGGCTGAGGCAGAGATTAAGAAG 59.866 47.826 9.23 0.00 40.87 2.85
1560 1610 2.871633 GCTGAGGCAGAGATTAAGAAGC 59.128 50.000 0.00 0.00 38.54 3.86
1561 1611 3.465871 CTGAGGCAGAGATTAAGAAGCC 58.534 50.000 0.00 0.00 42.31 4.35
1564 1614 3.274095 GGCAGAGATTAAGAAGCCTGT 57.726 47.619 0.00 0.00 39.02 4.00
1565 1615 3.615155 GGCAGAGATTAAGAAGCCTGTT 58.385 45.455 0.00 0.00 39.02 3.16
1566 1616 4.013050 GGCAGAGATTAAGAAGCCTGTTT 58.987 43.478 0.00 0.00 39.02 2.83
1567 1617 4.095632 GGCAGAGATTAAGAAGCCTGTTTC 59.904 45.833 0.00 0.00 39.02 2.78
1568 1618 4.940654 GCAGAGATTAAGAAGCCTGTTTCT 59.059 41.667 0.00 0.00 39.03 2.52
1678 1737 6.990341 TGCCGATTATGATTATCAAGATGG 57.010 37.500 0.00 0.00 0.00 3.51
1680 1739 6.942005 TGCCGATTATGATTATCAAGATGGTT 59.058 34.615 0.00 0.00 0.00 3.67
1721 1786 5.999205 ATGATGAGGATGAGGATGACTAC 57.001 43.478 0.00 0.00 0.00 2.73
1736 1801 6.945435 AGGATGACTACGAGTCTGAATATGAT 59.055 38.462 13.65 0.58 45.27 2.45
1743 1808 8.801299 ACTACGAGTCTGAATATGATGATGATT 58.199 33.333 0.00 0.00 0.00 2.57
1955 2023 3.716601 CAAGGTTCGGCTGTTGAAAAAT 58.283 40.909 0.00 0.00 0.00 1.82
2011 2079 1.609061 CCACGACATCCACAAGCTTCT 60.609 52.381 0.00 0.00 0.00 2.85
2019 2087 0.947244 CCACAAGCTTCTGTCCACAC 59.053 55.000 0.00 0.00 0.00 3.82
2022 2099 3.466836 CACAAGCTTCTGTCCACACTAA 58.533 45.455 0.00 0.00 0.00 2.24
2033 2110 1.003839 CACACTAAGCCCCGCTGAA 60.004 57.895 0.00 0.00 39.62 3.02
2153 2230 3.076785 AGGATCTGATCGAGAAGGGGTAT 59.923 47.826 11.28 0.00 33.12 2.73
2173 2250 0.319641 GCCGAGGTTGACGAAGACTT 60.320 55.000 0.00 0.00 0.00 3.01
2673 3389 7.658525 TTGGGCATATGTAAAACTCATGATT 57.341 32.000 4.29 0.00 0.00 2.57
3026 3845 4.993029 TGGTACTTCAACAACTTTTGGG 57.007 40.909 0.00 0.00 34.12 4.12
3180 3999 2.584391 GGGCGGTCCTGTTGACTCT 61.584 63.158 0.00 0.00 43.89 3.24
3224 4043 0.655733 AGTGTTGCGTGGTTTCTTCG 59.344 50.000 0.00 0.00 0.00 3.79
3327 4146 1.747745 GCTAAAATCGGCGTGGGGT 60.748 57.895 6.85 0.00 0.00 4.95
3342 4161 2.430367 GGTGAGCGGGTTTCCAGT 59.570 61.111 0.00 0.00 0.00 4.00
3358 4177 4.593864 GTCGCTCGCCCCAGGATC 62.594 72.222 0.00 0.00 0.00 3.36
3384 4203 1.337354 CCAGGCGCGGGTTTTTATTTT 60.337 47.619 8.83 0.00 0.00 1.82
3385 4204 1.724082 CAGGCGCGGGTTTTTATTTTG 59.276 47.619 8.83 0.00 0.00 2.44
3511 4339 0.431233 CGAAGAAGTCGCTGAACACG 59.569 55.000 0.00 0.00 44.14 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.349859 TCCTATAAAAGATGTTGGAGTACCCAT 59.650 37.037 4.19 0.00 46.10 4.00
41 42 6.674861 TCCTATAAAAGATGTTGGAGTACCCA 59.325 38.462 0.00 0.00 44.93 4.51
62 63 3.056607 GCAACCACTAACCGTTACTCCTA 60.057 47.826 0.00 0.00 0.00 2.94
80 81 3.006537 TGACAGTAACTCTACCAGGCAAC 59.993 47.826 0.00 0.00 0.00 4.17
85 86 4.096682 GCCTAGTGACAGTAACTCTACCAG 59.903 50.000 0.00 0.00 0.00 4.00
104 105 8.602472 AATAAAACCCAAGAATAATGTGCCTA 57.398 30.769 0.00 0.00 0.00 3.93
120 121 5.494632 AATCGATCCGACAAATAAAACCC 57.505 39.130 0.00 0.00 39.18 4.11
149 150 5.010617 TCCTTAGAAACCAAAATCCAACAGC 59.989 40.000 0.00 0.00 0.00 4.40
178 179 9.491675 TTTCATCAAAAGATGCACACAAATATT 57.508 25.926 0.00 0.00 32.87 1.28
231 232 6.378710 TGTTGTGAGACTATTAGAGATCGG 57.621 41.667 0.00 0.00 0.00 4.18
271 272 0.475906 GCCAGCCTCCTTCCATGTAT 59.524 55.000 0.00 0.00 0.00 2.29
301 302 4.213482 GCCGTTCTCAATCTTGTGTAGTTT 59.787 41.667 0.00 0.00 0.00 2.66
302 303 3.746492 GCCGTTCTCAATCTTGTGTAGTT 59.254 43.478 0.00 0.00 0.00 2.24
303 304 3.244078 TGCCGTTCTCAATCTTGTGTAGT 60.244 43.478 0.00 0.00 0.00 2.73
304 305 3.325870 TGCCGTTCTCAATCTTGTGTAG 58.674 45.455 0.00 0.00 0.00 2.74
305 306 3.394674 TGCCGTTCTCAATCTTGTGTA 57.605 42.857 0.00 0.00 0.00 2.90
306 307 2.254546 TGCCGTTCTCAATCTTGTGT 57.745 45.000 0.00 0.00 0.00 3.72
307 308 3.837213 AATGCCGTTCTCAATCTTGTG 57.163 42.857 0.00 0.00 0.00 3.33
308 309 4.549458 CAAAATGCCGTTCTCAATCTTGT 58.451 39.130 0.00 0.00 0.00 3.16
309 310 3.922240 CCAAAATGCCGTTCTCAATCTTG 59.078 43.478 0.00 0.00 0.00 3.02
310 311 3.826157 TCCAAAATGCCGTTCTCAATCTT 59.174 39.130 0.00 0.00 0.00 2.40
311 312 3.420893 TCCAAAATGCCGTTCTCAATCT 58.579 40.909 0.00 0.00 0.00 2.40
312 313 3.762779 CTCCAAAATGCCGTTCTCAATC 58.237 45.455 0.00 0.00 0.00 2.67
313 314 2.094545 GCTCCAAAATGCCGTTCTCAAT 60.095 45.455 0.00 0.00 0.00 2.57
326 327 0.677731 CATGAGGCCGAGCTCCAAAA 60.678 55.000 8.47 0.00 0.00 2.44
367 368 9.587772 TTTGAAACCAAAAGTATGAATTTCGAA 57.412 25.926 0.00 0.00 32.28 3.71
453 455 9.956640 AGATCATATCTCAAGGTATTTCATTCC 57.043 33.333 0.00 0.00 33.42 3.01
462 464 6.484364 TTGCACAGATCATATCTCAAGGTA 57.516 37.500 0.00 0.00 37.58 3.08
464 466 6.688637 TTTTGCACAGATCATATCTCAAGG 57.311 37.500 0.00 0.00 37.58 3.61
473 475 8.441312 AAATTTGTTCTTTTTGCACAGATCAT 57.559 26.923 0.00 0.00 0.00 2.45
501 503 9.566432 ACATGATATTATTCCTCTCAAAAGTCC 57.434 33.333 0.00 0.00 0.00 3.85
513 515 9.066892 TGGCTCTTTAACACATGATATTATTCC 57.933 33.333 0.00 0.00 0.00 3.01
516 518 8.978874 TGTGGCTCTTTAACACATGATATTAT 57.021 30.769 0.00 0.00 39.92 1.28
541 543 5.806654 AGGTTGTGCAAAAGGACAAATAT 57.193 34.783 4.16 0.00 0.00 1.28
542 544 5.127845 TGAAGGTTGTGCAAAAGGACAAATA 59.872 36.000 4.16 0.00 0.00 1.40
550 552 5.500610 CGTTGAAATGAAGGTTGTGCAAAAG 60.501 40.000 0.00 0.00 0.00 2.27
577 580 7.389330 ACATGTGTGTAAATATTCAGGACGAAA 59.611 33.333 0.00 0.00 35.22 3.46
717 720 7.570691 GCAATCTTCTGAGAAATTTGCTTTTGG 60.571 37.037 23.57 0.52 40.10 3.28
718 721 7.042321 TGCAATCTTCTGAGAAATTTGCTTTTG 60.042 33.333 27.44 12.36 42.12 2.44
724 727 7.088272 TGTGATGCAATCTTCTGAGAAATTTG 58.912 34.615 10.68 10.68 45.81 2.32
732 735 5.819379 GGAACTATGTGATGCAATCTTCTGA 59.181 40.000 0.00 0.00 45.81 3.27
746 749 4.156455 ACCTAAGCCATGGAACTATGTG 57.844 45.455 18.40 0.00 0.00 3.21
748 751 4.780815 TCAACCTAAGCCATGGAACTATG 58.219 43.478 18.40 5.02 0.00 2.23
928 974 1.712977 CTACCTCCCGTCGGAAGTCG 61.713 65.000 14.39 0.00 37.86 4.18
929 975 1.382692 CCTACCTCCCGTCGGAAGTC 61.383 65.000 14.39 0.00 37.86 3.01
930 976 1.379576 CCTACCTCCCGTCGGAAGT 60.380 63.158 14.39 9.36 37.86 3.01
931 977 2.125961 CCCTACCTCCCGTCGGAAG 61.126 68.421 14.39 0.00 37.86 3.46
1134 1184 3.267860 CTTCTGCTGCGCGGGATC 61.268 66.667 19.75 1.29 35.34 3.36
1206 1256 2.882793 GAGCATACTCGCGGGTTAC 58.117 57.895 20.90 7.37 36.85 2.50
1239 1289 0.043183 TCCTGATCTGCCTCCTTGGA 59.957 55.000 0.00 0.00 38.35 3.53
1436 1486 0.322975 GCTCAGAAACAGGCTCCTCA 59.677 55.000 0.00 0.00 0.00 3.86
1468 1518 6.111382 TCAGAAACATGCTCCTTAATCTCTG 58.889 40.000 0.00 0.00 0.00 3.35
1469 1519 6.305272 TCAGAAACATGCTCCTTAATCTCT 57.695 37.500 0.00 0.00 0.00 3.10
1470 1520 5.007528 GCTCAGAAACATGCTCCTTAATCTC 59.992 44.000 0.00 0.00 0.00 2.75
1471 1521 4.880696 GCTCAGAAACATGCTCCTTAATCT 59.119 41.667 0.00 0.00 0.00 2.40
1472 1522 4.036144 GGCTCAGAAACATGCTCCTTAATC 59.964 45.833 0.00 0.00 0.00 1.75
1473 1523 3.950395 GGCTCAGAAACATGCTCCTTAAT 59.050 43.478 0.00 0.00 0.00 1.40
1474 1524 3.009473 AGGCTCAGAAACATGCTCCTTAA 59.991 43.478 0.00 0.00 0.00 1.85
1475 1525 2.573462 AGGCTCAGAAACATGCTCCTTA 59.427 45.455 0.00 0.00 0.00 2.69
1476 1526 1.353694 AGGCTCAGAAACATGCTCCTT 59.646 47.619 0.00 0.00 0.00 3.36
1477 1527 0.990374 AGGCTCAGAAACATGCTCCT 59.010 50.000 0.00 0.00 0.00 3.69
1478 1528 1.339438 TGAGGCTCAGAAACATGCTCC 60.339 52.381 14.43 0.00 0.00 4.70
1479 1529 2.105006 TGAGGCTCAGAAACATGCTC 57.895 50.000 14.43 0.00 0.00 4.26
1494 1544 1.756408 ATCTCCGCATCAGCCTGAGG 61.756 60.000 1.15 1.15 36.99 3.86
1495 1545 0.106335 AATCTCCGCATCAGCCTGAG 59.894 55.000 0.00 0.00 37.44 3.35
1496 1546 0.179065 CAATCTCCGCATCAGCCTGA 60.179 55.000 0.00 0.00 37.52 3.86
1497 1547 0.179065 TCAATCTCCGCATCAGCCTG 60.179 55.000 0.00 0.00 37.52 4.85
1498 1548 0.106335 CTCAATCTCCGCATCAGCCT 59.894 55.000 0.00 0.00 37.52 4.58
1499 1549 0.883814 CCTCAATCTCCGCATCAGCC 60.884 60.000 0.00 0.00 37.52 4.85
1500 1550 0.105593 TCCTCAATCTCCGCATCAGC 59.894 55.000 0.00 0.00 37.42 4.26
1501 1551 1.873069 GCTCCTCAATCTCCGCATCAG 60.873 57.143 0.00 0.00 0.00 2.90
1502 1552 0.105593 GCTCCTCAATCTCCGCATCA 59.894 55.000 0.00 0.00 0.00 3.07
1503 1553 0.602372 GGCTCCTCAATCTCCGCATC 60.602 60.000 0.00 0.00 0.00 3.91
1504 1554 1.053264 AGGCTCCTCAATCTCCGCAT 61.053 55.000 0.00 0.00 0.00 4.73
1505 1555 1.687146 AGGCTCCTCAATCTCCGCA 60.687 57.895 0.00 0.00 0.00 5.69
1506 1556 1.227497 CAGGCTCCTCAATCTCCGC 60.227 63.158 0.00 0.00 0.00 5.54
1507 1557 0.539051 AACAGGCTCCTCAATCTCCG 59.461 55.000 0.00 0.00 0.00 4.63
1508 1558 2.238395 AGAAACAGGCTCCTCAATCTCC 59.762 50.000 0.00 0.00 0.00 3.71
1509 1559 3.055530 TCAGAAACAGGCTCCTCAATCTC 60.056 47.826 0.00 0.00 0.00 2.75
1510 1560 2.909006 TCAGAAACAGGCTCCTCAATCT 59.091 45.455 0.00 0.00 0.00 2.40
1511 1561 3.269178 CTCAGAAACAGGCTCCTCAATC 58.731 50.000 0.00 0.00 0.00 2.67
1512 1562 2.617532 GCTCAGAAACAGGCTCCTCAAT 60.618 50.000 0.00 0.00 0.00 2.57
1513 1563 1.271054 GCTCAGAAACAGGCTCCTCAA 60.271 52.381 0.00 0.00 0.00 3.02
1514 1564 0.322975 GCTCAGAAACAGGCTCCTCA 59.677 55.000 0.00 0.00 0.00 3.86
1515 1565 0.392327 GGCTCAGAAACAGGCTCCTC 60.392 60.000 0.00 0.00 33.64 3.71
1516 1566 0.839853 AGGCTCAGAAACAGGCTCCT 60.840 55.000 0.00 0.00 43.01 3.69
1517 1567 1.682257 AGGCTCAGAAACAGGCTCC 59.318 57.895 0.00 0.00 43.01 4.70
1534 1584 0.831966 AATCTCTGCCTCAGCCTGAG 59.168 55.000 14.99 14.99 43.91 3.35
1535 1585 2.165357 TAATCTCTGCCTCAGCCTGA 57.835 50.000 0.00 0.00 38.69 3.86
1536 1586 2.433604 TCTTAATCTCTGCCTCAGCCTG 59.566 50.000 0.00 0.00 38.69 4.85
1537 1587 2.756907 TCTTAATCTCTGCCTCAGCCT 58.243 47.619 0.00 0.00 38.69 4.58
1538 1588 3.465871 CTTCTTAATCTCTGCCTCAGCC 58.534 50.000 0.00 0.00 38.69 4.85
1539 1589 2.871633 GCTTCTTAATCTCTGCCTCAGC 59.128 50.000 0.00 0.00 40.48 4.26
1540 1590 3.134442 AGGCTTCTTAATCTCTGCCTCAG 59.866 47.826 0.00 0.00 46.53 3.35
1541 1591 3.110705 AGGCTTCTTAATCTCTGCCTCA 58.889 45.455 0.00 0.00 46.53 3.86
1542 1592 3.118445 ACAGGCTTCTTAATCTCTGCCTC 60.118 47.826 0.00 0.00 46.53 4.70
1544 1594 3.274095 ACAGGCTTCTTAATCTCTGCC 57.726 47.619 0.00 0.00 40.54 4.85
1545 1595 4.940654 AGAAACAGGCTTCTTAATCTCTGC 59.059 41.667 0.00 0.00 31.39 4.26
1546 1596 6.169094 TCAGAAACAGGCTTCTTAATCTCTG 58.831 40.000 0.00 0.00 33.25 3.35
1547 1597 6.365970 TCAGAAACAGGCTTCTTAATCTCT 57.634 37.500 0.00 0.00 33.25 3.10
1548 1598 5.064579 GCTCAGAAACAGGCTTCTTAATCTC 59.935 44.000 0.00 0.00 33.25 2.75
1549 1599 4.940654 GCTCAGAAACAGGCTTCTTAATCT 59.059 41.667 0.00 0.00 33.25 2.40
1550 1600 4.095632 GGCTCAGAAACAGGCTTCTTAATC 59.904 45.833 0.00 0.00 33.25 1.75
1551 1601 4.013050 GGCTCAGAAACAGGCTTCTTAAT 58.987 43.478 0.00 0.00 33.25 1.40
1552 1602 3.073062 AGGCTCAGAAACAGGCTTCTTAA 59.927 43.478 0.00 0.00 44.06 1.85
1553 1603 2.639839 AGGCTCAGAAACAGGCTTCTTA 59.360 45.455 0.00 0.00 44.06 2.10
1554 1604 1.423161 AGGCTCAGAAACAGGCTTCTT 59.577 47.619 0.00 0.00 44.06 2.52
1555 1605 1.003003 GAGGCTCAGAAACAGGCTTCT 59.997 52.381 10.25 0.00 46.34 2.85
1556 1606 1.271054 TGAGGCTCAGAAACAGGCTTC 60.271 52.381 14.43 0.00 46.34 3.86
1557 1607 0.767375 TGAGGCTCAGAAACAGGCTT 59.233 50.000 14.43 0.00 46.34 4.35
1580 1630 1.680522 GCTCCTCAATCTCCGCCTCA 61.681 60.000 0.00 0.00 0.00 3.86
1625 1675 3.118112 CAGCATAAACATCCTGGTCCTCT 60.118 47.826 0.00 0.00 0.00 3.69
1678 1737 8.916654 CATCATAATAACCGTCATAGTCAGAAC 58.083 37.037 0.00 0.00 0.00 3.01
1680 1739 8.404107 TCATCATAATAACCGTCATAGTCAGA 57.596 34.615 0.00 0.00 0.00 3.27
1721 1786 9.798994 TCATAATCATCATCATATTCAGACTCG 57.201 33.333 0.00 0.00 0.00 4.18
1757 1822 8.828751 TCCCAGTCATAATCATCATCATCATAA 58.171 33.333 0.00 0.00 0.00 1.90
1880 1948 1.001503 CTGCTCCAGGACCCTCTCT 59.998 63.158 0.00 0.00 0.00 3.10
1955 2023 2.421952 GGCCAAGATCAGCCTTATGTCA 60.422 50.000 12.74 0.00 46.14 3.58
1993 2061 1.070758 ACAGAAGCTTGTGGATGTCGT 59.929 47.619 25.62 1.82 0.00 4.34
1995 2063 2.079925 GGACAGAAGCTTGTGGATGTC 58.920 52.381 25.62 18.40 37.04 3.06
2011 2079 3.065306 CGGGGCTTAGTGTGGACA 58.935 61.111 0.00 0.00 0.00 4.02
2019 2087 1.876156 GATCATTTCAGCGGGGCTTAG 59.124 52.381 0.00 0.00 36.40 2.18
2022 2099 0.034186 TTGATCATTTCAGCGGGGCT 60.034 50.000 0.00 0.00 40.77 5.19
2033 2110 3.740764 GCTCCTCGCTTCTCTTGATCATT 60.741 47.826 0.00 0.00 35.14 2.57
2153 2230 1.006571 GTCTTCGTCAACCTCGGCA 60.007 57.895 0.00 0.00 0.00 5.69
2173 2250 3.737559 ATTTGCCCCTGTTGTCATAGA 57.262 42.857 0.00 0.00 0.00 1.98
2673 3389 9.490379 AAAATAAAATTACAACCGGCAATACAA 57.510 25.926 0.00 0.00 0.00 2.41
2838 3556 7.039313 ACTCCAACCAAGTATTCAAAAGTTC 57.961 36.000 0.00 0.00 0.00 3.01
2945 3663 9.255304 GAGCAACTATAAGAACTAATCCTTCTG 57.745 37.037 0.00 0.00 0.00 3.02
3026 3845 1.604915 GAGGCCTCCCCAGAACTTC 59.395 63.158 23.19 0.00 35.39 3.01
3180 3999 2.282180 GAAGCACCAAAGGCGGGA 60.282 61.111 0.00 0.00 36.08 5.14
3272 4091 2.099446 GCGCTTAAAATCGCCGCA 59.901 55.556 0.00 0.00 45.01 5.69
3309 4128 1.747745 ACCCCACGCCGATTTTAGC 60.748 57.895 0.00 0.00 0.00 3.09
3322 4141 3.961414 GGAAACCCGCTCACCCCA 61.961 66.667 0.00 0.00 0.00 4.96
3327 4146 2.342279 CGACTGGAAACCCGCTCA 59.658 61.111 0.00 0.00 0.00 4.26
3400 4219 3.610585 CGAATTTTAGCCGAACTTTGCCA 60.611 43.478 0.00 0.00 0.00 4.92
3401 4220 2.914838 CGAATTTTAGCCGAACTTTGCC 59.085 45.455 0.00 0.00 0.00 4.52
3480 4308 5.246145 CGACTTCTTCGTCCCTTAGTTAT 57.754 43.478 0.00 0.00 43.24 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.