Multiple sequence alignment - TraesCS6D01G111800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G111800 chr6D 100.000 6520 0 0 1 6520 78307668 78301149 0.000000e+00 12041.0
1 TraesCS6D01G111800 chr6D 97.398 538 12 2 286 822 78330879 78330343 0.000000e+00 915.0
2 TraesCS6D01G111800 chr6D 78.610 1281 163 57 3724 4952 78762982 78764203 0.000000e+00 745.0
3 TraesCS6D01G111800 chr6D 93.971 481 21 7 346 822 328177339 328176863 0.000000e+00 721.0
4 TraesCS6D01G111800 chr6D 78.668 1111 183 37 3239 4326 78541161 78540082 0.000000e+00 689.0
5 TraesCS6D01G111800 chr6D 82.846 513 64 14 5028 5519 78539466 78538957 7.760000e-119 438.0
6 TraesCS6D01G111800 chr6D 80.108 558 62 28 4400 4917 78540051 78539503 2.870000e-98 370.0
7 TraesCS6D01G111800 chr6D 93.631 157 9 1 6365 6520 20157725 20157569 3.930000e-57 233.0
8 TraesCS6D01G111800 chr6D 91.489 94 8 0 1 94 135888806 135888899 5.310000e-26 130.0
9 TraesCS6D01G111800 chr6D 74.839 310 55 20 3872 4169 78356605 78356307 1.150000e-22 119.0
10 TraesCS6D01G111800 chr6B 94.933 3414 131 22 1123 4505 151153694 151150292 0.000000e+00 5308.0
11 TraesCS6D01G111800 chr6B 92.571 1871 105 15 4485 6344 151149806 151147959 0.000000e+00 2654.0
12 TraesCS6D01G111800 chr6B 78.842 1295 179 51 3710 4952 151382545 151383796 0.000000e+00 785.0
13 TraesCS6D01G111800 chr6B 87.849 609 56 15 222 822 349708539 349709137 0.000000e+00 699.0
14 TraesCS6D01G111800 chr6B 87.500 608 59 14 222 822 349715831 349716428 0.000000e+00 686.0
15 TraesCS6D01G111800 chr6B 78.539 1109 177 38 3239 4325 151299787 151298718 0.000000e+00 673.0
16 TraesCS6D01G111800 chr6B 96.053 304 11 1 822 1125 151154161 151153859 1.630000e-135 494.0
17 TraesCS6D01G111800 chr6B 84.491 432 58 3 5007 5429 151298129 151297698 1.010000e-112 418.0
18 TraesCS6D01G111800 chr6B 84.910 391 59 0 5007 5397 151383775 151384165 4.740000e-106 396.0
19 TraesCS6D01G111800 chr6B 80.144 554 72 25 4400 4924 151298685 151298141 4.770000e-101 379.0
20 TraesCS6D01G111800 chr6A 92.284 2307 113 24 3252 5524 93892304 93890029 0.000000e+00 3214.0
21 TraesCS6D01G111800 chr6A 90.806 2121 118 33 1123 3200 93894772 93892686 0.000000e+00 2765.0
22 TraesCS6D01G111800 chr6A 92.826 697 36 11 134 822 612389236 612388546 0.000000e+00 998.0
23 TraesCS6D01G111800 chr6A 78.073 1619 240 75 3346 4915 94199503 94197951 0.000000e+00 917.0
24 TraesCS6D01G111800 chr6A 95.738 305 9 2 823 1127 93895235 93894935 7.600000e-134 488.0
25 TraesCS6D01G111800 chr6A 83.041 513 63 13 5028 5519 94197912 94197403 1.670000e-120 444.0
26 TraesCS6D01G111800 chr6A 84.910 391 59 0 5007 5397 94239211 94239601 4.740000e-106 396.0
27 TraesCS6D01G111800 chr6A 85.096 208 29 2 1123 1329 94234048 94234254 1.840000e-50 211.0
28 TraesCS6D01G111800 chr6A 84.018 219 30 3 4107 4324 94238432 94238646 8.570000e-49 206.0
29 TraesCS6D01G111800 chr6A 91.000 100 6 1 6269 6365 93887098 93886999 1.480000e-26 132.0
30 TraesCS6D01G111800 chr1D 92.535 710 40 12 120 822 163031207 163030504 0.000000e+00 1005.0
31 TraesCS6D01G111800 chr1D 90.253 790 43 19 44 822 316988045 316987279 0.000000e+00 1002.0
32 TraesCS6D01G111800 chr1D 92.023 702 37 16 120 812 163078514 163077823 0.000000e+00 968.0
33 TraesCS6D01G111800 chr1D 93.293 164 9 2 6359 6520 34661588 34661425 2.350000e-59 241.0
34 TraesCS6D01G111800 chr1D 93.631 157 9 1 6365 6520 474806214 474806370 3.930000e-57 233.0
35 TraesCS6D01G111800 chr3A 90.264 719 51 16 120 829 458993203 458992495 0.000000e+00 922.0
36 TraesCS6D01G111800 chr3A 87.342 79 8 2 216 294 365868039 365868115 9.000000e-14 89.8
37 TraesCS6D01G111800 chr5A 89.466 712 43 16 120 822 303923294 303922606 0.000000e+00 870.0
38 TraesCS6D01G111800 chr5A 87.037 54 7 0 5098 5151 383464029 383463976 1.960000e-05 62.1
39 TraesCS6D01G111800 chr3D 92.376 564 33 9 263 823 74091749 74091193 0.000000e+00 795.0
40 TraesCS6D01G111800 chr3D 93.711 159 9 1 6363 6520 590218171 590218013 3.040000e-58 237.0
41 TraesCS6D01G111800 chr3D 93.038 158 10 1 6364 6520 552599504 552599347 5.090000e-56 230.0
42 TraesCS6D01G111800 chr2D 94.268 157 8 1 6365 6520 608262446 608262290 8.450000e-59 239.0
43 TraesCS6D01G111800 chr2D 94.262 122 6 1 1 122 275103272 275103152 1.120000e-42 185.0
44 TraesCS6D01G111800 chr7D 93.168 161 10 1 6361 6520 15165373 15165533 1.090000e-57 235.0
45 TraesCS6D01G111800 chr5D 93.671 158 9 1 6364 6520 399805108 399804951 1.090000e-57 235.0
46 TraesCS6D01G111800 chr1A 92.638 163 10 2 6359 6520 406102379 406102218 3.930000e-57 233.0
47 TraesCS6D01G111800 chr1B 92.623 122 9 0 1 122 523730136 523730257 6.720000e-40 176.0
48 TraesCS6D01G111800 chr2B 91.803 122 10 0 1 122 750662382 750662503 3.130000e-38 171.0
49 TraesCS6D01G111800 chr4B 90.741 54 5 0 5098 5151 94208670 94208617 9.070000e-09 73.1
50 TraesCS6D01G111800 chr7A 92.157 51 3 1 4945 4995 36890121 36890170 3.260000e-08 71.3
51 TraesCS6D01G111800 chr7B 97.222 36 1 0 4966 5001 720314212 720314247 1.960000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G111800 chr6D 78301149 78307668 6519 True 12041.000000 12041 100.000000 1 6520 1 chr6D.!!$R2 6519
1 TraesCS6D01G111800 chr6D 78330343 78330879 536 True 915.000000 915 97.398000 286 822 1 chr6D.!!$R3 536
2 TraesCS6D01G111800 chr6D 78762982 78764203 1221 False 745.000000 745 78.610000 3724 4952 1 chr6D.!!$F1 1228
3 TraesCS6D01G111800 chr6D 78538957 78541161 2204 True 499.000000 689 80.540667 3239 5519 3 chr6D.!!$R6 2280
4 TraesCS6D01G111800 chr6B 151147959 151154161 6202 True 2818.666667 5308 94.519000 822 6344 3 chr6B.!!$R1 5522
5 TraesCS6D01G111800 chr6B 349708539 349709137 598 False 699.000000 699 87.849000 222 822 1 chr6B.!!$F1 600
6 TraesCS6D01G111800 chr6B 349715831 349716428 597 False 686.000000 686 87.500000 222 822 1 chr6B.!!$F2 600
7 TraesCS6D01G111800 chr6B 151382545 151384165 1620 False 590.500000 785 81.876000 3710 5397 2 chr6B.!!$F3 1687
8 TraesCS6D01G111800 chr6B 151297698 151299787 2089 True 490.000000 673 81.058000 3239 5429 3 chr6B.!!$R2 2190
9 TraesCS6D01G111800 chr6A 93886999 93895235 8236 True 1649.750000 3214 92.457000 823 6365 4 chr6A.!!$R2 5542
10 TraesCS6D01G111800 chr6A 612388546 612389236 690 True 998.000000 998 92.826000 134 822 1 chr6A.!!$R1 688
11 TraesCS6D01G111800 chr6A 94197403 94199503 2100 True 680.500000 917 80.557000 3346 5519 2 chr6A.!!$R3 2173
12 TraesCS6D01G111800 chr6A 94238432 94239601 1169 False 301.000000 396 84.464000 4107 5397 2 chr6A.!!$F2 1290
13 TraesCS6D01G111800 chr1D 163030504 163031207 703 True 1005.000000 1005 92.535000 120 822 1 chr1D.!!$R2 702
14 TraesCS6D01G111800 chr1D 316987279 316988045 766 True 1002.000000 1002 90.253000 44 822 1 chr1D.!!$R4 778
15 TraesCS6D01G111800 chr1D 163077823 163078514 691 True 968.000000 968 92.023000 120 812 1 chr1D.!!$R3 692
16 TraesCS6D01G111800 chr3A 458992495 458993203 708 True 922.000000 922 90.264000 120 829 1 chr3A.!!$R1 709
17 TraesCS6D01G111800 chr5A 303922606 303923294 688 True 870.000000 870 89.466000 120 822 1 chr5A.!!$R1 702
18 TraesCS6D01G111800 chr3D 74091193 74091749 556 True 795.000000 795 92.376000 263 823 1 chr3D.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.035152 TAGGCGTAGTGGAGGTCGAA 60.035 55.000 0.00 0.0 0.00 3.71 F
372 407 0.321671 GGGGGCTTTCTCTTTTTGCC 59.678 55.000 0.00 0.0 42.56 4.52 F
1168 1374 0.460987 CGCCGATTCTTTCTCAGGCT 60.461 55.000 2.75 0.0 42.16 4.58 F
1632 1864 1.126488 CCTCCAGCTCATGCCTCTAA 58.874 55.000 0.00 0.0 40.80 2.10 F
2382 2614 2.163412 GCATATGCGGACAAAAGGTGAA 59.837 45.455 12.82 0.0 0.00 3.18 F
3671 4291 1.070134 TGCACACTGTTGTACTCCCTC 59.930 52.381 0.00 0.0 33.30 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1130 0.735978 TAACAGCTGATGGCACGTCG 60.736 55.000 23.35 0.0 44.79 5.12 R
2367 2599 0.591659 GACCTTCACCTTTTGTCCGC 59.408 55.000 0.00 0.0 0.00 5.54 R
3141 3397 2.035632 AGAGAGTAGGCGGATTCAAGG 58.964 52.381 0.00 0.0 0.00 3.61 R
3665 4285 2.310052 AGTTTTTCTGGGATGGAGGGAG 59.690 50.000 0.00 0.0 0.00 4.30 R
4270 4909 1.549037 GGTTCCCTTTGGGCATGTACA 60.549 52.381 0.00 0.0 43.94 2.90 R
5645 7135 0.330604 ACTGAAGCCAGGTGCATCAT 59.669 50.000 0.00 0.0 45.76 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.915575 CGTAGGCGTAGTGGAGGT 58.084 61.111 0.00 0.00 0.00 3.85
18 19 1.726265 CGTAGGCGTAGTGGAGGTC 59.274 63.158 0.00 0.00 0.00 3.85
19 20 1.726265 GTAGGCGTAGTGGAGGTCG 59.274 63.158 0.00 0.00 0.00 4.79
20 21 0.745845 GTAGGCGTAGTGGAGGTCGA 60.746 60.000 0.00 0.00 0.00 4.20
21 22 0.035152 TAGGCGTAGTGGAGGTCGAA 60.035 55.000 0.00 0.00 0.00 3.71
22 23 1.139095 GGCGTAGTGGAGGTCGAAG 59.861 63.158 0.00 0.00 0.00 3.79
23 24 1.139095 GCGTAGTGGAGGTCGAAGG 59.861 63.158 0.00 0.00 0.00 3.46
24 25 1.139095 CGTAGTGGAGGTCGAAGGC 59.861 63.158 0.00 0.00 0.00 4.35
25 26 1.139095 GTAGTGGAGGTCGAAGGCG 59.861 63.158 0.00 0.00 39.35 5.52
26 27 2.050350 TAGTGGAGGTCGAAGGCGG 61.050 63.158 0.00 0.00 38.28 6.13
27 28 2.488771 TAGTGGAGGTCGAAGGCGGA 62.489 60.000 0.00 0.00 38.28 5.54
28 29 3.068691 TGGAGGTCGAAGGCGGAG 61.069 66.667 0.00 0.00 38.28 4.63
88 89 2.815211 CGGTCAGGTGCGTCCATG 60.815 66.667 0.75 0.00 39.02 3.66
118 119 3.379445 GTTCGGGCGAGGTGGAGA 61.379 66.667 0.00 0.00 0.00 3.71
130 131 2.676822 TGGAGAAGGAGCGAGCGT 60.677 61.111 0.00 0.00 0.00 5.07
136 137 2.201436 GAAGGAGCGAGCGTGTGAGA 62.201 60.000 0.00 0.00 0.00 3.27
142 152 1.640210 GCGAGCGTGTGAGAGAGAGA 61.640 60.000 0.00 0.00 0.00 3.10
145 155 0.679640 AGCGTGTGAGAGAGAGAGGG 60.680 60.000 0.00 0.00 0.00 4.30
146 156 0.678366 GCGTGTGAGAGAGAGAGGGA 60.678 60.000 0.00 0.00 0.00 4.20
147 157 1.378531 CGTGTGAGAGAGAGAGGGAG 58.621 60.000 0.00 0.00 0.00 4.30
148 158 1.762708 GTGTGAGAGAGAGAGGGAGG 58.237 60.000 0.00 0.00 0.00 4.30
149 159 1.283613 GTGTGAGAGAGAGAGGGAGGA 59.716 57.143 0.00 0.00 0.00 3.71
165 175 3.633361 GGAGAAATATCTGCGGGGG 57.367 57.895 0.00 0.00 35.54 5.40
280 309 1.617947 GCGACCCAGGACAGAGGAAT 61.618 60.000 0.00 0.00 0.00 3.01
341 370 2.432300 CCGGCTCGGGTGGATTAGT 61.432 63.158 5.79 0.00 44.15 2.24
372 407 0.321671 GGGGGCTTTCTCTTTTTGCC 59.678 55.000 0.00 0.00 42.56 4.52
831 870 3.770388 TCCGGGTATTACACACATTCTCA 59.230 43.478 0.00 0.00 0.00 3.27
838 877 8.395633 GGGTATTACACACATTCTCATGTAAAC 58.604 37.037 0.00 0.00 42.14 2.01
843 882 6.452242 ACACACATTCTCATGTAAACGAGTA 58.548 36.000 0.00 0.00 42.14 2.59
962 1001 9.947669 AACTACGATACTAGATCATACAAACAC 57.052 33.333 0.00 0.00 0.00 3.32
977 1016 5.913137 ACAAACACATTTCTTTGGTCTGA 57.087 34.783 0.00 0.00 32.57 3.27
1005 1044 0.995675 CCCCTTGGATCCCCATGACT 60.996 60.000 9.90 0.00 43.12 3.41
1091 1130 7.010552 GTCCAGAATTATGTCACTGATGTGTAC 59.989 40.741 0.00 0.00 44.14 2.90
1168 1374 0.460987 CGCCGATTCTTTCTCAGGCT 60.461 55.000 2.75 0.00 42.16 4.58
1228 1434 6.875948 TTGCTACAGAAAATGCAACTCTTA 57.124 33.333 0.00 0.00 39.98 2.10
1309 1515 9.467796 CTACTGATAGTGGAGATGGTATGAATA 57.532 37.037 0.00 0.00 0.00 1.75
1397 1627 6.587608 GTCTTCATACAATTTGCAAAAGGGAG 59.412 38.462 17.19 5.59 0.00 4.30
1482 1713 7.894708 TGTTCATTTTGTATGGTCATGAACAT 58.105 30.769 28.35 28.35 46.18 2.71
1632 1864 1.126488 CCTCCAGCTCATGCCTCTAA 58.874 55.000 0.00 0.00 40.80 2.10
2137 2369 8.715998 GTCATATATCCATGCAGTCTAAAAGTG 58.284 37.037 0.00 0.00 0.00 3.16
2186 2418 2.875296 TCTCCCCACAATCCACAAAAG 58.125 47.619 0.00 0.00 0.00 2.27
2192 2424 6.736581 TCCCCACAATCCACAAAAGATATAA 58.263 36.000 0.00 0.00 0.00 0.98
2382 2614 2.163412 GCATATGCGGACAAAAGGTGAA 59.837 45.455 12.82 0.00 0.00 3.18
2429 2664 4.764823 TGTCATTTTCTAAAACGCCATCCT 59.235 37.500 0.00 0.00 0.00 3.24
2443 2678 4.080526 ACGCCATCCTTTTACTAATGGAGT 60.081 41.667 4.46 4.29 44.28 3.85
2494 2729 9.851686 TCTTCATTTATATGCAATGACTACCTT 57.148 29.630 10.29 0.00 39.78 3.50
2516 2751 6.462067 CCTTCATATTTTCCCCTCTTGAATGC 60.462 42.308 0.00 0.00 0.00 3.56
2553 2790 6.238869 GGAGCTGAAAAATCAGTTCTGAAACT 60.239 38.462 18.04 1.68 46.80 2.66
2569 2806 7.831691 TCTGAAACTTCATTATGTTTCCCAA 57.168 32.000 13.05 0.79 46.58 4.12
2571 2808 8.869109 TCTGAAACTTCATTATGTTTCCCAATT 58.131 29.630 13.05 0.00 46.58 2.32
2572 2809 9.143631 CTGAAACTTCATTATGTTTCCCAATTC 57.856 33.333 13.05 0.00 46.58 2.17
2606 2844 9.760660 GTATTCACAAGAGCTGTTACTTATTTG 57.239 33.333 0.00 0.00 35.47 2.32
2660 2898 4.141298 ACCATTCCAAATTTTCTTGGGCAA 60.141 37.500 2.68 0.00 45.16 4.52
2666 2904 4.450053 CAAATTTTCTTGGGCAACTTCCA 58.550 39.130 0.00 0.00 0.00 3.53
2723 2968 7.493971 CCTTCTGTTACATATATATGCTCCAGC 59.506 40.741 20.46 7.95 37.19 4.85
2907 3155 8.953507 AAAGAACAGCAAAAGTTTTGAAAATG 57.046 26.923 28.36 20.97 0.00 2.32
2914 3162 9.109533 CAGCAAAAGTTTTGAAAATGATATTGC 57.890 29.630 28.36 11.41 38.73 3.56
2929 3179 5.117584 TGATATTGCAAATGTTTGGCATCC 58.882 37.500 1.71 0.00 38.57 3.51
2931 3181 4.822685 ATTGCAAATGTTTGGCATCCTA 57.177 36.364 1.71 0.00 38.57 2.94
2959 3209 8.202745 AGTATCATGCTAGCTGTTTTAAACTC 57.797 34.615 17.23 1.57 0.00 3.01
3101 3357 6.787085 ACTTCAGAAGTAAACACTGTATGC 57.213 37.500 14.58 0.00 40.69 3.14
3134 3390 6.101881 TCTCATCTCTCCACTAAGAGGACATA 59.898 42.308 1.38 0.00 42.58 2.29
3141 3397 5.202004 TCCACTAAGAGGACATAGGAGAAC 58.798 45.833 0.00 0.00 0.00 3.01
3211 3467 6.238842 CCGTTTTCTCGAGATGGTTACCTATA 60.239 42.308 17.44 0.00 0.00 1.31
3542 4157 6.685657 TGCTGTCATTGCAATATTTGTTGTA 58.314 32.000 12.53 0.00 37.51 2.41
3611 4231 6.543465 CAGACAGATGGCAATAATGGTTTCTA 59.457 38.462 0.00 0.00 0.00 2.10
3665 4285 2.350772 GGAGCATTGCACACTGTTGTAC 60.351 50.000 11.91 0.00 33.30 2.90
3667 4287 2.549754 AGCATTGCACACTGTTGTACTC 59.450 45.455 11.91 0.00 33.30 2.59
3668 4288 2.350772 GCATTGCACACTGTTGTACTCC 60.351 50.000 3.15 0.00 33.30 3.85
3669 4289 1.961793 TTGCACACTGTTGTACTCCC 58.038 50.000 0.00 0.00 33.30 4.30
3671 4291 1.070134 TGCACACTGTTGTACTCCCTC 59.930 52.381 0.00 0.00 33.30 4.30
3672 4292 1.608283 GCACACTGTTGTACTCCCTCC 60.608 57.143 0.00 0.00 33.30 4.30
3673 4293 1.691976 CACACTGTTGTACTCCCTCCA 59.308 52.381 0.00 0.00 33.30 3.86
3674 4294 2.303022 CACACTGTTGTACTCCCTCCAT 59.697 50.000 0.00 0.00 33.30 3.41
3985 4614 5.743467 TGTTTGTAGTTTTATGTGTCGCAG 58.257 37.500 0.00 0.00 0.00 5.18
4002 4631 4.321745 GTCGCAGCTCAAATATTTGTGTTG 59.678 41.667 28.32 28.32 42.11 3.33
4062 4696 4.406943 GCCATCTGTTTCTCGATTTTGAC 58.593 43.478 0.00 0.00 0.00 3.18
4079 4713 4.408993 TTGACGAATGAGCATTGTCAAG 57.591 40.909 22.47 7.09 40.08 3.02
4270 4909 4.755266 ATCATCTAGCCCTTGTTTACGT 57.245 40.909 0.00 0.00 0.00 3.57
4326 4966 3.416156 AGAGGTTGTTCATCTTGGCTTC 58.584 45.455 0.00 0.00 33.05 3.86
4461 5113 8.454106 ACAGAAGAATGTTACACTTATCAATGC 58.546 33.333 0.00 0.00 0.00 3.56
4509 5668 2.305052 GTGGGTACTAAACTGAAGCCCT 59.695 50.000 0.00 0.00 35.79 5.19
4521 5680 4.331108 ACTGAAGCCCTTGAATTTCTCTC 58.669 43.478 0.00 0.00 0.00 3.20
4561 5722 5.134978 ACGTTTTAACTTCTGTTGACGTC 57.865 39.130 9.11 9.11 42.13 4.34
4641 5805 2.819608 GCTGCACAAGGTTAGGATTTCA 59.180 45.455 0.00 0.00 0.00 2.69
4717 5911 2.433604 CACAGGTCTGGAGTATCTGCAT 59.566 50.000 2.87 0.00 30.16 3.96
4885 6079 4.710865 GGTACTATGGGCTACTTAGATCCC 59.289 50.000 0.00 0.00 39.22 3.85
4948 6146 6.630444 CTTCATCAGCATTGCCTAAATAGT 57.370 37.500 4.70 0.00 0.00 2.12
5079 6294 6.042781 TGTCTACCAATTGTTCAGGTACTTCT 59.957 38.462 4.43 0.00 34.60 2.85
5160 6375 1.043116 CATCACAGGCCGTCCTCCTA 61.043 60.000 0.00 0.00 41.93 2.94
5261 6476 4.196626 CATTGTGGATGCAAGAATGGTT 57.803 40.909 10.69 0.00 0.00 3.67
5267 6482 2.391678 GATGCAAGAATGGTTGGGGAT 58.608 47.619 0.00 0.00 0.00 3.85
5276 6491 5.142639 AGAATGGTTGGGGATTATGACATG 58.857 41.667 0.00 0.00 0.00 3.21
5299 6514 0.035881 TCTGTCTGGAAAGCTGCTGG 59.964 55.000 1.35 0.00 0.00 4.85
5320 6535 4.430765 GGCGCTGCATTGCAAGCT 62.431 61.111 26.95 0.00 40.37 3.74
5351 6566 4.492160 GAGCGTCCGACGATGGCA 62.492 66.667 24.78 0.00 41.80 4.92
5423 6638 1.588597 GAGGCAAAGAAGCTTGGGC 59.411 57.895 2.10 2.91 39.06 5.36
5469 6699 2.225255 GCACTTGAGGCAGAAGAAGAAC 59.775 50.000 2.85 0.00 0.00 3.01
5524 6944 6.061022 TGGTCCTGCAATGAGATAGTTTTA 57.939 37.500 0.00 0.00 0.00 1.52
5566 6992 4.031611 GGTTAAGAGCCCCTCTTCTCTTA 58.968 47.826 10.49 7.41 46.42 2.10
5567 6993 4.470304 GGTTAAGAGCCCCTCTTCTCTTAA 59.530 45.833 16.11 16.11 46.42 1.85
5571 6997 5.787846 AGAGCCCCTCTTCTCTTAATTTT 57.212 39.130 0.00 0.00 37.60 1.82
5645 7135 6.097915 CGCTTAGATGAAGGGGAAAGTATA 57.902 41.667 0.00 0.00 42.88 1.47
5655 7145 3.983410 AGGGGAAAGTATATGATGCACCT 59.017 43.478 0.00 0.00 0.00 4.00
5679 7169 8.956426 CCTGGCTTCAGTTCATACTTTAAAATA 58.044 33.333 0.00 0.00 36.81 1.40
5714 7204 9.899226 AAATCTGAGAAAAAGTTAGCACATAAC 57.101 29.630 0.00 0.00 43.58 1.89
5715 7205 7.435068 TCTGAGAAAAAGTTAGCACATAACC 57.565 36.000 0.00 0.00 44.20 2.85
5733 7223 9.075519 CACATAACCACAACATGAATTTATGAC 57.924 33.333 16.43 0.00 33.65 3.06
5734 7224 8.250332 ACATAACCACAACATGAATTTATGACC 58.750 33.333 16.43 0.00 33.65 4.02
5737 7227 6.009589 ACCACAACATGAATTTATGACCTCA 58.990 36.000 16.43 0.00 0.00 3.86
5738 7228 6.664816 ACCACAACATGAATTTATGACCTCAT 59.335 34.615 16.43 0.00 40.22 2.90
5739 7229 6.976349 CCACAACATGAATTTATGACCTCATG 59.024 38.462 16.43 7.58 46.88 3.07
5816 7308 5.073554 TGTCATCAATATCTGTAATGGGCCT 59.926 40.000 4.53 0.00 0.00 5.19
5819 7311 7.119846 GTCATCAATATCTGTAATGGGCCTAAC 59.880 40.741 4.53 0.35 0.00 2.34
5841 7334 2.038387 AAGCCCAACTTATGTAGGCG 57.962 50.000 13.77 0.00 45.25 5.52
5873 7392 7.059945 CAGTTGTCGATTCTGTCTAATTTTTGC 59.940 37.037 0.00 0.00 0.00 3.68
5901 7420 8.815141 TCAACCTGTGTTATGAATTTTGATTG 57.185 30.769 0.00 0.00 32.09 2.67
5922 7441 2.493278 GGAAATCCTGTGACATGTTGGG 59.507 50.000 0.00 0.38 0.00 4.12
6008 7533 1.141657 GGGTGCAGCAGATATTCTCCA 59.858 52.381 19.06 0.00 0.00 3.86
6036 7562 6.317391 GTCTGCCTACTCTTCTGCAATAAAAT 59.683 38.462 0.00 0.00 32.58 1.82
6070 7602 3.565764 TGGAATCGAATCTGATGGCTT 57.434 42.857 0.00 0.00 0.00 4.35
6090 7622 5.452777 GCTTTGATTCGAAGCTAACACTTT 58.547 37.500 25.21 0.00 44.79 2.66
6117 7649 7.156876 TCTGGCATTATTCTTTTAACCACAG 57.843 36.000 0.00 0.00 0.00 3.66
6125 7657 8.524870 TTATTCTTTTAACCACAGACGTCTAC 57.475 34.615 19.57 0.00 0.00 2.59
6134 7666 3.679980 CCACAGACGTCTACTTGATTTGG 59.320 47.826 19.57 10.33 0.00 3.28
6137 7669 4.750098 ACAGACGTCTACTTGATTTGGTTG 59.250 41.667 19.57 3.89 0.00 3.77
6139 7671 4.750098 AGACGTCTACTTGATTTGGTTGTG 59.250 41.667 18.46 0.00 0.00 3.33
6159 7692 2.159099 TGGACGATGTAACAGGAGCATC 60.159 50.000 0.00 0.00 36.57 3.91
6244 7782 4.846137 GTGTAATTTGCTTCGTTGCAGTAG 59.154 41.667 5.42 0.00 44.27 2.57
6254 7792 5.163814 GCTTCGTTGCAGTAGAGAATCAAAT 60.164 40.000 0.00 0.00 37.82 2.32
6311 9774 5.880054 AACTCCAAACATTTCTCGTATGG 57.120 39.130 0.00 0.00 0.00 2.74
6314 9777 5.411669 ACTCCAAACATTTCTCGTATGGAAC 59.588 40.000 0.00 0.00 35.25 3.62
6358 9824 3.121944 GTCGTCGTCGTACTAGTTCTTCA 59.878 47.826 0.00 0.00 38.33 3.02
6365 9831 6.986231 TCGTCGTACTAGTTCTTCATATACCA 59.014 38.462 0.00 0.00 0.00 3.25
6366 9832 7.042456 TCGTCGTACTAGTTCTTCATATACCAC 60.042 40.741 0.00 0.00 0.00 4.16
6367 9833 7.042187 CGTCGTACTAGTTCTTCATATACCACT 60.042 40.741 0.00 0.00 0.00 4.00
6368 9834 9.265901 GTCGTACTAGTTCTTCATATACCACTA 57.734 37.037 0.00 0.00 0.00 2.74
6369 9835 9.836864 TCGTACTAGTTCTTCATATACCACTAA 57.163 33.333 0.00 0.00 0.00 2.24
6386 9852 9.990868 ATACCACTAATAGAAAAAGGGTCATTT 57.009 29.630 0.00 0.00 0.00 2.32
6387 9853 8.122472 ACCACTAATAGAAAAAGGGTCATTTG 57.878 34.615 0.00 0.00 0.00 2.32
6388 9854 7.728532 ACCACTAATAGAAAAAGGGTCATTTGT 59.271 33.333 0.00 0.00 0.00 2.83
6389 9855 8.244113 CCACTAATAGAAAAAGGGTCATTTGTC 58.756 37.037 0.00 0.00 0.00 3.18
6390 9856 8.244113 CACTAATAGAAAAAGGGTCATTTGTCC 58.756 37.037 0.00 0.00 28.13 4.02
6391 9857 6.605471 AATAGAAAAAGGGTCATTTGTCCC 57.395 37.500 4.88 4.88 42.66 4.46
6392 9858 2.890945 AGAAAAAGGGTCATTTGTCCCG 59.109 45.455 7.15 0.00 46.13 5.14
6393 9859 1.627864 AAAAGGGTCATTTGTCCCGG 58.372 50.000 7.15 0.00 46.13 5.73
6394 9860 0.481128 AAAGGGTCATTTGTCCCGGT 59.519 50.000 0.00 0.00 46.13 5.28
6395 9861 0.481128 AAGGGTCATTTGTCCCGGTT 59.519 50.000 0.00 0.00 46.13 4.44
6396 9862 0.037734 AGGGTCATTTGTCCCGGTTC 59.962 55.000 0.00 0.00 46.13 3.62
6397 9863 1.303091 GGGTCATTTGTCCCGGTTCG 61.303 60.000 0.00 0.00 33.91 3.95
6398 9864 0.604511 GGTCATTTGTCCCGGTTCGT 60.605 55.000 0.00 0.00 0.00 3.85
6399 9865 1.338011 GGTCATTTGTCCCGGTTCGTA 60.338 52.381 0.00 0.00 0.00 3.43
6400 9866 2.415776 GTCATTTGTCCCGGTTCGTAA 58.584 47.619 0.00 0.00 0.00 3.18
6401 9867 2.414138 GTCATTTGTCCCGGTTCGTAAG 59.586 50.000 0.00 0.00 0.00 2.34
6402 9868 1.735571 CATTTGTCCCGGTTCGTAAGG 59.264 52.381 0.00 0.00 38.47 2.69
6403 9869 0.035176 TTTGTCCCGGTTCGTAAGGG 59.965 55.000 0.00 0.00 46.40 3.95
6404 9870 2.125391 GTCCCGGTTCGTAAGGGC 60.125 66.667 0.00 0.00 44.70 5.19
6405 9871 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
6406 9872 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
6407 9873 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
6408 9874 1.449070 CCGGTTCGTAAGGGCCTTC 60.449 63.158 24.77 13.45 38.47 3.46
6409 9875 1.595357 CGGTTCGTAAGGGCCTTCT 59.405 57.895 24.77 1.49 38.47 2.85
6410 9876 0.739813 CGGTTCGTAAGGGCCTTCTG 60.740 60.000 24.77 16.49 38.47 3.02
6411 9877 0.323957 GGTTCGTAAGGGCCTTCTGT 59.676 55.000 24.77 0.11 38.47 3.41
6412 9878 1.675116 GGTTCGTAAGGGCCTTCTGTC 60.675 57.143 24.77 10.93 38.47 3.51
6413 9879 1.275573 GTTCGTAAGGGCCTTCTGTCT 59.724 52.381 24.77 0.00 38.47 3.41
6414 9880 1.183549 TCGTAAGGGCCTTCTGTCTC 58.816 55.000 24.77 6.73 38.47 3.36
6415 9881 1.187087 CGTAAGGGCCTTCTGTCTCT 58.813 55.000 24.77 0.00 0.00 3.10
6416 9882 1.134965 CGTAAGGGCCTTCTGTCTCTG 60.135 57.143 24.77 0.92 0.00 3.35
6417 9883 1.903183 GTAAGGGCCTTCTGTCTCTGT 59.097 52.381 24.77 0.00 0.00 3.41
6418 9884 1.439543 AAGGGCCTTCTGTCTCTGTT 58.560 50.000 14.48 0.00 0.00 3.16
6419 9885 1.439543 AGGGCCTTCTGTCTCTGTTT 58.560 50.000 0.00 0.00 0.00 2.83
6420 9886 1.777272 AGGGCCTTCTGTCTCTGTTTT 59.223 47.619 0.00 0.00 0.00 2.43
6421 9887 1.882623 GGGCCTTCTGTCTCTGTTTTG 59.117 52.381 0.84 0.00 0.00 2.44
6422 9888 1.882623 GGCCTTCTGTCTCTGTTTTGG 59.117 52.381 0.00 0.00 0.00 3.28
6423 9889 2.487265 GGCCTTCTGTCTCTGTTTTGGA 60.487 50.000 0.00 0.00 0.00 3.53
6424 9890 3.214328 GCCTTCTGTCTCTGTTTTGGAA 58.786 45.455 0.00 0.00 0.00 3.53
6425 9891 3.003793 GCCTTCTGTCTCTGTTTTGGAAC 59.996 47.826 0.00 0.00 36.29 3.62
6426 9892 3.565902 CCTTCTGTCTCTGTTTTGGAACC 59.434 47.826 0.00 0.00 34.80 3.62
6427 9893 2.833794 TCTGTCTCTGTTTTGGAACCG 58.166 47.619 0.00 0.00 34.80 4.44
6428 9894 1.873591 CTGTCTCTGTTTTGGAACCGG 59.126 52.381 0.00 0.00 34.80 5.28
6429 9895 1.487142 TGTCTCTGTTTTGGAACCGGA 59.513 47.619 9.46 0.00 34.80 5.14
6430 9896 1.871676 GTCTCTGTTTTGGAACCGGAC 59.128 52.381 9.46 0.76 34.80 4.79
6431 9897 1.766496 TCTCTGTTTTGGAACCGGACT 59.234 47.619 9.46 0.00 34.80 3.85
6432 9898 2.967201 TCTCTGTTTTGGAACCGGACTA 59.033 45.455 9.46 0.00 34.80 2.59
6433 9899 3.388676 TCTCTGTTTTGGAACCGGACTAA 59.611 43.478 9.46 2.96 34.80 2.24
6434 9900 4.131596 CTCTGTTTTGGAACCGGACTAAA 58.868 43.478 9.46 9.62 34.80 1.85
6435 9901 4.525024 TCTGTTTTGGAACCGGACTAAAA 58.475 39.130 9.46 15.12 34.80 1.52
6436 9902 4.577283 TCTGTTTTGGAACCGGACTAAAAG 59.423 41.667 9.46 7.83 34.80 2.27
6437 9903 3.633065 TGTTTTGGAACCGGACTAAAAGG 59.367 43.478 9.46 0.00 34.80 3.11
6438 9904 3.581265 TTTGGAACCGGACTAAAAGGT 57.419 42.857 9.46 0.00 40.50 3.50
6439 9905 2.845363 TGGAACCGGACTAAAAGGTC 57.155 50.000 9.46 0.00 37.26 3.85
6440 9906 1.001181 TGGAACCGGACTAAAAGGTCG 59.999 52.381 9.46 0.00 37.26 4.79
6441 9907 1.001293 GGAACCGGACTAAAAGGTCGT 59.999 52.381 9.46 0.00 37.26 4.34
6442 9908 2.548707 GGAACCGGACTAAAAGGTCGTT 60.549 50.000 9.46 0.00 37.26 3.85
6443 9909 3.306019 GGAACCGGACTAAAAGGTCGTTA 60.306 47.826 9.46 0.00 37.26 3.18
6444 9910 3.303881 ACCGGACTAAAAGGTCGTTAC 57.696 47.619 9.46 0.00 37.12 2.50
6445 9911 2.893489 ACCGGACTAAAAGGTCGTTACT 59.107 45.455 9.46 0.00 37.12 2.24
6446 9912 4.079253 ACCGGACTAAAAGGTCGTTACTA 58.921 43.478 9.46 0.00 37.12 1.82
6447 9913 4.522789 ACCGGACTAAAAGGTCGTTACTAA 59.477 41.667 9.46 0.00 37.12 2.24
6448 9914 5.185828 ACCGGACTAAAAGGTCGTTACTAAT 59.814 40.000 9.46 0.00 37.12 1.73
6449 9915 5.517770 CCGGACTAAAAGGTCGTTACTAATG 59.482 44.000 0.00 0.00 37.12 1.90
6450 9916 5.005107 CGGACTAAAAGGTCGTTACTAATGC 59.995 44.000 0.00 0.00 37.12 3.56
6451 9917 5.292834 GGACTAAAAGGTCGTTACTAATGCC 59.707 44.000 0.00 0.00 37.12 4.40
6452 9918 5.181009 ACTAAAAGGTCGTTACTAATGCCC 58.819 41.667 0.00 0.00 0.00 5.36
6453 9919 3.994931 AAAGGTCGTTACTAATGCCCT 57.005 42.857 0.00 0.00 0.00 5.19
6454 9920 3.994931 AAGGTCGTTACTAATGCCCTT 57.005 42.857 0.00 0.00 0.00 3.95
6455 9921 3.261981 AGGTCGTTACTAATGCCCTTG 57.738 47.619 0.00 0.00 0.00 3.61
6456 9922 2.093128 AGGTCGTTACTAATGCCCTTGG 60.093 50.000 0.00 0.00 0.00 3.61
6467 9933 3.672066 GCCCTTGGCCTTTAGTCTT 57.328 52.632 3.32 0.00 44.06 3.01
6468 9934 1.177401 GCCCTTGGCCTTTAGTCTTG 58.823 55.000 3.32 0.00 44.06 3.02
6469 9935 1.839424 CCCTTGGCCTTTAGTCTTGG 58.161 55.000 3.32 0.00 0.00 3.61
6470 9936 1.075536 CCCTTGGCCTTTAGTCTTGGT 59.924 52.381 3.32 0.00 0.00 3.67
6471 9937 2.490902 CCCTTGGCCTTTAGTCTTGGTT 60.491 50.000 3.32 0.00 0.00 3.67
6472 9938 2.820197 CCTTGGCCTTTAGTCTTGGTTC 59.180 50.000 3.32 0.00 0.00 3.62
6473 9939 3.498661 CCTTGGCCTTTAGTCTTGGTTCT 60.499 47.826 3.32 0.00 0.00 3.01
6474 9940 3.876309 TGGCCTTTAGTCTTGGTTCTT 57.124 42.857 3.32 0.00 0.00 2.52
6475 9941 4.986054 TGGCCTTTAGTCTTGGTTCTTA 57.014 40.909 3.32 0.00 0.00 2.10
6476 9942 4.648651 TGGCCTTTAGTCTTGGTTCTTAC 58.351 43.478 3.32 0.00 0.00 2.34
6477 9943 4.103469 TGGCCTTTAGTCTTGGTTCTTACA 59.897 41.667 3.32 0.00 0.00 2.41
6478 9944 4.454847 GGCCTTTAGTCTTGGTTCTTACAC 59.545 45.833 0.00 0.00 0.00 2.90
6479 9945 4.151867 GCCTTTAGTCTTGGTTCTTACACG 59.848 45.833 0.00 0.00 0.00 4.49
6480 9946 5.535333 CCTTTAGTCTTGGTTCTTACACGA 58.465 41.667 0.00 0.00 0.00 4.35
6481 9947 5.987347 CCTTTAGTCTTGGTTCTTACACGAA 59.013 40.000 0.00 0.00 0.00 3.85
6482 9948 6.145696 CCTTTAGTCTTGGTTCTTACACGAAG 59.854 42.308 0.00 0.00 34.65 3.79
6483 9949 3.391049 AGTCTTGGTTCTTACACGAAGC 58.609 45.455 0.00 0.00 40.73 3.86
6484 9950 2.155155 GTCTTGGTTCTTACACGAAGCG 59.845 50.000 0.00 0.00 42.63 4.68
6485 9951 1.459592 CTTGGTTCTTACACGAAGCGG 59.540 52.381 0.00 0.00 42.63 5.52
6486 9952 0.320073 TGGTTCTTACACGAAGCGGG 60.320 55.000 0.00 0.00 42.63 6.13
6487 9953 0.037975 GGTTCTTACACGAAGCGGGA 60.038 55.000 0.00 0.00 34.87 5.14
6488 9954 1.066136 GTTCTTACACGAAGCGGGAC 58.934 55.000 0.00 0.00 34.87 4.46
6489 9955 0.675083 TTCTTACACGAAGCGGGACA 59.325 50.000 0.00 0.00 34.87 4.02
6490 9956 0.242825 TCTTACACGAAGCGGGACAG 59.757 55.000 0.00 0.00 34.87 3.51
6491 9957 0.242825 CTTACACGAAGCGGGACAGA 59.757 55.000 0.00 0.00 32.98 3.41
6492 9958 0.892755 TTACACGAAGCGGGACAGAT 59.107 50.000 0.00 0.00 32.98 2.90
6493 9959 0.172578 TACACGAAGCGGGACAGATG 59.827 55.000 0.00 0.00 32.98 2.90
6494 9960 1.811266 CACGAAGCGGGACAGATGG 60.811 63.158 0.00 0.00 28.17 3.51
6495 9961 2.202932 CGAAGCGGGACAGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
6496 9962 2.514824 GAAGCGGGACAGATGGGC 60.515 66.667 0.00 0.00 0.00 5.36
6497 9963 4.115199 AAGCGGGACAGATGGGCC 62.115 66.667 0.00 0.00 0.00 5.80
6499 9965 4.554036 GCGGGACAGATGGGCCTC 62.554 72.222 4.53 0.00 0.00 4.70
6500 9966 3.866582 CGGGACAGATGGGCCTCC 61.867 72.222 4.53 2.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.035152 TTCGACCTCCACTACGCCTA 60.035 55.000 0.00 0.00 0.00 3.93
3 4 1.303888 TTCGACCTCCACTACGCCT 60.304 57.895 0.00 0.00 0.00 5.52
4 5 1.139095 CTTCGACCTCCACTACGCC 59.861 63.158 0.00 0.00 0.00 5.68
5 6 1.139095 CCTTCGACCTCCACTACGC 59.861 63.158 0.00 0.00 0.00 4.42
6 7 1.139095 GCCTTCGACCTCCACTACG 59.861 63.158 0.00 0.00 0.00 3.51
7 8 1.139095 CGCCTTCGACCTCCACTAC 59.861 63.158 0.00 0.00 38.10 2.73
8 9 2.050350 CCGCCTTCGACCTCCACTA 61.050 63.158 0.00 0.00 38.10 2.74
9 10 3.382832 CCGCCTTCGACCTCCACT 61.383 66.667 0.00 0.00 38.10 4.00
10 11 3.358076 CTCCGCCTTCGACCTCCAC 62.358 68.421 0.00 0.00 38.10 4.02
11 12 3.068691 CTCCGCCTTCGACCTCCA 61.069 66.667 0.00 0.00 38.10 3.86
12 13 4.516195 GCTCCGCCTTCGACCTCC 62.516 72.222 0.00 0.00 38.10 4.30
13 14 3.418744 GAGCTCCGCCTTCGACCTC 62.419 68.421 0.87 0.00 38.10 3.85
14 15 3.453679 GAGCTCCGCCTTCGACCT 61.454 66.667 0.87 0.00 38.10 3.85
15 16 4.516195 GGAGCTCCGCCTTCGACC 62.516 72.222 19.06 0.00 38.10 4.79
16 17 4.516195 GGGAGCTCCGCCTTCGAC 62.516 72.222 26.36 6.14 38.10 4.20
34 35 4.509737 GTCGCCTAGGACCGCACC 62.510 72.222 14.75 0.00 0.00 5.01
35 36 4.849329 CGTCGCCTAGGACCGCAC 62.849 72.222 14.75 7.06 33.30 5.34
40 41 3.525545 GACCCCGTCGCCTAGGAC 61.526 72.222 14.75 0.99 0.00 3.85
71 72 2.815211 CATGGACGCACCTGACCG 60.815 66.667 1.15 0.00 39.86 4.79
74 75 4.758251 CGCCATGGACGCACCTGA 62.758 66.667 18.40 0.00 39.86 3.86
76 77 4.760047 GTCGCCATGGACGCACCT 62.760 66.667 18.40 0.00 39.86 4.00
100 101 4.796231 CTCCACCTCGCCCGAACG 62.796 72.222 0.00 0.00 0.00 3.95
101 102 2.837371 CTTCTCCACCTCGCCCGAAC 62.837 65.000 0.00 0.00 0.00 3.95
102 103 2.602267 TTCTCCACCTCGCCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
103 104 3.068691 CTTCTCCACCTCGCCCGA 61.069 66.667 0.00 0.00 0.00 5.14
104 105 4.148825 CCTTCTCCACCTCGCCCG 62.149 72.222 0.00 0.00 0.00 6.13
105 106 2.683933 TCCTTCTCCACCTCGCCC 60.684 66.667 0.00 0.00 0.00 6.13
106 107 2.896443 CTCCTTCTCCACCTCGCC 59.104 66.667 0.00 0.00 0.00 5.54
107 108 2.185608 GCTCCTTCTCCACCTCGC 59.814 66.667 0.00 0.00 0.00 5.03
108 109 1.999071 CTCGCTCCTTCTCCACCTCG 61.999 65.000 0.00 0.00 0.00 4.63
109 110 1.813192 CTCGCTCCTTCTCCACCTC 59.187 63.158 0.00 0.00 0.00 3.85
110 111 2.355193 GCTCGCTCCTTCTCCACCT 61.355 63.158 0.00 0.00 0.00 4.00
111 112 2.185608 GCTCGCTCCTTCTCCACC 59.814 66.667 0.00 0.00 0.00 4.61
112 113 2.202676 CGCTCGCTCCTTCTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
113 114 2.676822 ACGCTCGCTCCTTCTCCA 60.677 61.111 0.00 0.00 0.00 3.86
114 115 2.202676 CACGCTCGCTCCTTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
118 119 2.206515 CTCTCACACGCTCGCTCCTT 62.207 60.000 0.00 0.00 0.00 3.36
130 131 1.563879 CTCCTCCCTCTCTCTCTCACA 59.436 57.143 0.00 0.00 0.00 3.58
136 137 5.644188 CAGATATTTCTCCTCCCTCTCTCT 58.356 45.833 0.00 0.00 0.00 3.10
142 152 1.974236 CCGCAGATATTTCTCCTCCCT 59.026 52.381 0.00 0.00 0.00 4.20
145 155 1.002544 CCCCCGCAGATATTTCTCCTC 59.997 57.143 0.00 0.00 0.00 3.71
146 156 1.059913 CCCCCGCAGATATTTCTCCT 58.940 55.000 0.00 0.00 0.00 3.69
147 157 3.633361 CCCCCGCAGATATTTCTCC 57.367 57.895 0.00 0.00 0.00 3.71
162 172 2.448736 GTCAGATCCCCCTCCCCC 60.449 72.222 0.00 0.00 0.00 5.40
165 175 1.834822 CCTCGTCAGATCCCCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
167 177 2.444895 GCCTCGTCAGATCCCCCT 60.445 66.667 0.00 0.00 0.00 4.79
174 184 2.438614 CCTCTCGGCCTCGTCAGA 60.439 66.667 0.00 0.00 37.69 3.27
280 309 2.643808 GGACACCCCTCCCTCCCTA 61.644 68.421 0.00 0.00 0.00 3.53
507 543 6.940430 AATCAATTCAAACTCCTCCCAAAT 57.060 33.333 0.00 0.00 0.00 2.32
831 870 5.443185 TTAGCGGCTATACTCGTTTACAT 57.557 39.130 11.04 0.00 0.00 2.29
838 877 5.087397 GTCTAACATTAGCGGCTATACTCG 58.913 45.833 11.04 0.86 0.00 4.18
962 1001 5.520376 ACCTGTTTCAGACCAAAGAAATG 57.480 39.130 0.00 0.00 36.29 2.32
1005 1044 1.753930 TCGTAAGTCGACCATAGGCA 58.246 50.000 13.01 0.50 44.01 4.75
1091 1130 0.735978 TAACAGCTGATGGCACGTCG 60.736 55.000 23.35 0.00 44.79 5.12
1168 1374 2.741145 ACTTGCCAACCCTTGTACAAA 58.259 42.857 10.03 0.00 0.00 2.83
1228 1434 2.158564 CCATGGCATTCAGGATAGGTGT 60.159 50.000 0.00 0.00 0.00 4.16
2163 2395 0.698238 TGTGGATTGTGGGGAGAAGG 59.302 55.000 0.00 0.00 0.00 3.46
2236 2468 5.065235 TGCACACTTTCTCAGAATTCATGA 58.935 37.500 8.44 7.68 0.00 3.07
2254 2486 5.652994 AGTTTAAAAGGTTTGACTGCACA 57.347 34.783 0.00 0.00 0.00 4.57
2337 2569 9.297586 TGCTAGTACTAAAGTATTTTCATGACG 57.702 33.333 3.76 0.00 40.09 4.35
2367 2599 0.591659 GACCTTCACCTTTTGTCCGC 59.408 55.000 0.00 0.00 0.00 5.54
2382 2614 7.126421 ACAGTCTCCAACATATATCTTTGACCT 59.874 37.037 5.49 0.00 0.00 3.85
2494 2729 5.517924 TGCATTCAAGAGGGGAAAATATGA 58.482 37.500 0.00 0.00 0.00 2.15
2516 2751 5.443185 TTTTCAGCTCCACTTCTTGATTG 57.557 39.130 0.00 0.00 0.00 2.67
2529 2764 6.733145 AGTTTCAGAACTGATTTTTCAGCTC 58.267 36.000 5.34 1.08 44.27 4.09
2553 2790 8.893563 AGTAAGGAATTGGGAAACATAATGAA 57.106 30.769 0.00 0.00 0.00 2.57
2564 2801 7.743116 TGTGAATACTAGTAAGGAATTGGGA 57.257 36.000 6.70 0.00 0.00 4.37
2569 2806 8.200792 CAGCTCTTGTGAATACTAGTAAGGAAT 58.799 37.037 6.70 0.00 32.50 3.01
2571 2808 6.663953 ACAGCTCTTGTGAATACTAGTAAGGA 59.336 38.462 6.70 0.00 38.99 3.36
2572 2809 6.868622 ACAGCTCTTGTGAATACTAGTAAGG 58.131 40.000 6.70 0.00 38.99 2.69
2606 2844 4.137543 AGTTGTTGTTTGACAGATCCCTC 58.862 43.478 0.00 0.00 0.00 4.30
2723 2968 5.398603 AGTGTTCTCACAAGATCCTACAG 57.601 43.478 1.36 0.00 46.01 2.74
2907 3155 5.362263 AGGATGCCAAACATTTGCAATATC 58.638 37.500 0.00 0.98 39.84 1.63
2914 3162 8.849168 TGATACTAATAGGATGCCAAACATTTG 58.151 33.333 0.00 0.00 39.84 2.32
2959 3209 6.426980 TGAAGAACACAAAGCTATAGCATG 57.573 37.500 26.07 23.76 45.16 4.06
3040 3294 8.554528 GCAATTAATACCTGATGATGGATATCG 58.445 37.037 0.00 0.00 36.04 2.92
3101 3357 8.256605 TCTTAGTGGAGAGATGAGAAATCAAAG 58.743 37.037 0.00 0.00 0.00 2.77
3141 3397 2.035632 AGAGAGTAGGCGGATTCAAGG 58.964 52.381 0.00 0.00 0.00 3.61
3665 4285 2.310052 AGTTTTTCTGGGATGGAGGGAG 59.690 50.000 0.00 0.00 0.00 4.30
3667 4287 2.907458 AGTTTTTCTGGGATGGAGGG 57.093 50.000 0.00 0.00 0.00 4.30
3668 4288 6.190587 AGAAATAGTTTTTCTGGGATGGAGG 58.809 40.000 7.66 0.00 37.37 4.30
3669 4289 6.886459 TGAGAAATAGTTTTTCTGGGATGGAG 59.114 38.462 12.58 0.00 38.73 3.86
3671 4291 6.127619 GGTGAGAAATAGTTTTTCTGGGATGG 60.128 42.308 12.58 0.00 38.73 3.51
3672 4292 6.660949 AGGTGAGAAATAGTTTTTCTGGGATG 59.339 38.462 12.58 0.00 38.73 3.51
3673 4293 6.794534 AGGTGAGAAATAGTTTTTCTGGGAT 58.205 36.000 12.58 0.00 38.73 3.85
3674 4294 6.200878 AGGTGAGAAATAGTTTTTCTGGGA 57.799 37.500 12.58 0.00 38.73 4.37
3962 4588 5.736486 TGCGACACATAAAACTACAAACA 57.264 34.783 0.00 0.00 0.00 2.83
3985 4614 7.713764 AAGGAAACAACACAAATATTTGAGC 57.286 32.000 30.18 11.32 40.55 4.26
4002 4631 5.279006 GGAGAAAAGGTGGATGAAAGGAAAC 60.279 44.000 0.00 0.00 0.00 2.78
4093 4731 5.934625 AGTAAGTGCAGTTCCATCTACAAAG 59.065 40.000 10.78 0.00 0.00 2.77
4270 4909 1.549037 GGTTCCCTTTGGGCATGTACA 60.549 52.381 0.00 0.00 43.94 2.90
4296 4935 6.310764 AGATGAACAACCTCTCAGATGATT 57.689 37.500 0.00 0.00 0.00 2.57
4461 5113 7.335422 ACTTGATTTAAGGTCTATGCAGTTCTG 59.665 37.037 0.00 0.00 40.84 3.02
4561 5722 6.766429 AGTGGTTTACTAGTAGAACCTTTGG 58.234 40.000 28.16 0.00 42.55 3.28
4717 5911 2.303163 ATGCTGGTTTACACGCGATA 57.697 45.000 15.93 1.01 0.00 2.92
4885 6079 1.414378 TGTTGTGCATGACGTACTCG 58.586 50.000 0.00 0.00 43.34 4.18
5160 6375 2.021068 CTGTCGCTGACCGGGATGAT 62.021 60.000 6.32 0.00 36.91 2.45
5229 6444 0.394762 TCCACAATGCTCTCCATGGC 60.395 55.000 6.96 0.00 33.49 4.40
5261 6476 4.474651 ACAGAGTTCATGTCATAATCCCCA 59.525 41.667 0.00 0.00 0.00 4.96
5276 6491 1.803555 GCAGCTTTCCAGACAGAGTTC 59.196 52.381 0.00 0.00 0.00 3.01
5320 6535 0.331954 ACGCTCCCTTGAGACCTCTA 59.668 55.000 0.00 0.00 41.42 2.43
5469 6699 3.632145 GCTTGTATATCCCCACCTTGTTG 59.368 47.826 0.00 0.00 0.00 3.33
5524 6944 4.848357 ACCTGCAGCACTAATGTAAGATT 58.152 39.130 8.66 0.00 0.00 2.40
5571 6997 5.591067 ACAGACGGTGGTTTTATCAGAAAAA 59.409 36.000 0.00 0.00 0.00 1.94
5587 7013 4.079970 TGAGATTTACAGAGACAGACGGT 58.920 43.478 0.00 0.00 0.00 4.83
5645 7135 0.330604 ACTGAAGCCAGGTGCATCAT 59.669 50.000 0.00 0.00 45.76 2.45
5655 7145 9.515226 AGTATTTTAAAGTATGAACTGAAGCCA 57.485 29.630 0.00 0.00 35.62 4.75
5713 7203 6.009589 TGAGGTCATAAATTCATGTTGTGGT 58.990 36.000 0.00 0.00 0.00 4.16
5714 7204 6.513806 TGAGGTCATAAATTCATGTTGTGG 57.486 37.500 0.00 0.00 0.00 4.17
5715 7205 7.764331 TCATGAGGTCATAAATTCATGTTGTG 58.236 34.615 11.66 0.00 44.44 3.33
5763 7255 9.445786 TTTGTCAATTCTGTTTTTCGAGTTATC 57.554 29.630 0.00 0.00 0.00 1.75
5816 7308 6.117488 GCCTACATAAGTTGGGCTTAAGTTA 58.883 40.000 4.02 5.31 42.35 2.24
5819 7311 3.560068 CGCCTACATAAGTTGGGCTTAAG 59.440 47.826 0.00 0.00 42.35 1.85
5841 7334 1.126846 CAGAATCGACAACTGAACGGC 59.873 52.381 8.91 0.00 34.07 5.68
5873 7392 7.874940 TCAAAATTCATAACACAGGTTGAGAG 58.125 34.615 0.00 0.00 37.88 3.20
5901 7420 2.493278 CCCAACATGTCACAGGATTTCC 59.507 50.000 0.00 0.00 0.00 3.13
5970 7495 0.987294 CCTGTCCCCAGTTGACATCT 59.013 55.000 0.00 0.00 41.58 2.90
5971 7496 0.035056 CCCTGTCCCCAGTTGACATC 60.035 60.000 0.00 0.00 41.58 3.06
5973 7498 1.385347 ACCCTGTCCCCAGTTGACA 60.385 57.895 0.00 0.00 40.28 3.58
5974 7499 1.073199 CACCCTGTCCCCAGTTGAC 59.927 63.158 0.00 0.00 36.95 3.18
5976 7501 2.282462 GCACCCTGTCCCCAGTTG 60.282 66.667 0.00 0.00 36.95 3.16
5977 7502 2.776526 TGCACCCTGTCCCCAGTT 60.777 61.111 0.00 0.00 36.95 3.16
5978 7503 3.252284 CTGCACCCTGTCCCCAGT 61.252 66.667 0.00 0.00 36.95 4.00
5979 7504 4.729918 GCTGCACCCTGTCCCCAG 62.730 72.222 0.00 0.00 38.50 4.45
5981 7506 4.729918 CTGCTGCACCCTGTCCCC 62.730 72.222 0.00 0.00 0.00 4.81
6090 7622 8.424918 TGTGGTTAAAAGAATAATGCCAGAAAA 58.575 29.630 0.00 0.00 0.00 2.29
6098 7630 8.029642 AGACGTCTGTGGTTAAAAGAATAATG 57.970 34.615 19.30 0.00 0.00 1.90
6110 7642 4.602340 AATCAAGTAGACGTCTGTGGTT 57.398 40.909 28.12 20.32 0.00 3.67
6117 7649 4.084013 CCACAACCAAATCAAGTAGACGTC 60.084 45.833 7.70 7.70 0.00 4.34
6125 7657 3.253188 ACATCGTCCACAACCAAATCAAG 59.747 43.478 0.00 0.00 0.00 3.02
6134 7666 2.993899 CTCCTGTTACATCGTCCACAAC 59.006 50.000 0.00 0.00 0.00 3.32
6137 7669 1.067142 TGCTCCTGTTACATCGTCCAC 60.067 52.381 0.00 0.00 0.00 4.02
6139 7671 2.474816 GATGCTCCTGTTACATCGTCC 58.525 52.381 0.00 0.00 31.70 4.79
6159 7692 4.804139 GCATCAGCATTTTCAGAATTCTGG 59.196 41.667 30.33 17.40 41.56 3.86
6244 7782 7.867403 TGGCAGTTTACTCAAAATTTGATTCTC 59.133 33.333 9.02 0.49 39.30 2.87
6254 7792 5.606348 ATGGTTTGGCAGTTTACTCAAAA 57.394 34.783 0.00 0.00 32.01 2.44
6311 9774 4.209590 GTCGAAAACGACGAGTATGTTC 57.790 45.455 0.00 0.00 40.37 3.18
6365 9831 7.396339 GGGACAAATGACCCTTTTTCTATTAGT 59.604 37.037 12.83 0.00 44.84 2.24
6366 9832 7.415206 CGGGACAAATGACCCTTTTTCTATTAG 60.415 40.741 16.90 0.00 45.84 1.73
6367 9833 6.376018 CGGGACAAATGACCCTTTTTCTATTA 59.624 38.462 16.90 0.00 45.84 0.98
6368 9834 5.185056 CGGGACAAATGACCCTTTTTCTATT 59.815 40.000 16.90 0.00 45.84 1.73
6369 9835 4.705023 CGGGACAAATGACCCTTTTTCTAT 59.295 41.667 16.90 0.00 45.84 1.98
6370 9836 4.076394 CGGGACAAATGACCCTTTTTCTA 58.924 43.478 16.90 0.00 45.84 2.10
6371 9837 2.890945 CGGGACAAATGACCCTTTTTCT 59.109 45.455 16.90 0.00 45.84 2.52
6372 9838 2.029380 CCGGGACAAATGACCCTTTTTC 60.029 50.000 16.90 0.00 45.84 2.29
6373 9839 1.967779 CCGGGACAAATGACCCTTTTT 59.032 47.619 16.90 0.00 45.84 1.94
6374 9840 1.133294 ACCGGGACAAATGACCCTTTT 60.133 47.619 16.90 0.90 45.84 2.27
6375 9841 0.481128 ACCGGGACAAATGACCCTTT 59.519 50.000 16.90 3.08 45.84 3.11
6376 9842 0.481128 AACCGGGACAAATGACCCTT 59.519 50.000 16.90 4.87 45.84 3.95
6377 9843 0.037734 GAACCGGGACAAATGACCCT 59.962 55.000 16.90 0.84 45.84 4.34
6378 9844 1.303091 CGAACCGGGACAAATGACCC 61.303 60.000 6.32 10.44 44.81 4.46
6379 9845 0.604511 ACGAACCGGGACAAATGACC 60.605 55.000 6.32 0.00 0.00 4.02
6380 9846 2.083167 TACGAACCGGGACAAATGAC 57.917 50.000 6.32 0.00 0.00 3.06
6381 9847 2.613474 CCTTACGAACCGGGACAAATGA 60.613 50.000 6.32 0.00 0.00 2.57
6382 9848 1.735571 CCTTACGAACCGGGACAAATG 59.264 52.381 6.32 0.00 0.00 2.32
6383 9849 1.339342 CCCTTACGAACCGGGACAAAT 60.339 52.381 6.32 0.00 40.55 2.32
6384 9850 0.035176 CCCTTACGAACCGGGACAAA 59.965 55.000 6.32 0.00 40.55 2.83
6385 9851 1.672898 CCCTTACGAACCGGGACAA 59.327 57.895 6.32 0.00 40.55 3.18
6386 9852 2.946346 GCCCTTACGAACCGGGACA 61.946 63.158 6.32 0.00 40.55 4.02
6387 9853 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
6388 9854 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
6389 9855 2.864378 GAAGGCCCTTACGAACCGGG 62.864 65.000 6.32 0.00 41.06 5.73
6390 9856 1.449070 GAAGGCCCTTACGAACCGG 60.449 63.158 0.00 0.00 0.00 5.28
6391 9857 0.739813 CAGAAGGCCCTTACGAACCG 60.740 60.000 0.00 0.00 0.00 4.44
6392 9858 0.323957 ACAGAAGGCCCTTACGAACC 59.676 55.000 0.00 0.00 0.00 3.62
6393 9859 1.275573 AGACAGAAGGCCCTTACGAAC 59.724 52.381 0.00 0.00 0.00 3.95
6394 9860 1.549170 GAGACAGAAGGCCCTTACGAA 59.451 52.381 0.00 0.00 0.00 3.85
6395 9861 1.183549 GAGACAGAAGGCCCTTACGA 58.816 55.000 0.00 0.00 0.00 3.43
6396 9862 1.134965 CAGAGACAGAAGGCCCTTACG 60.135 57.143 0.00 0.00 0.00 3.18
6397 9863 1.903183 ACAGAGACAGAAGGCCCTTAC 59.097 52.381 0.00 0.00 0.00 2.34
6398 9864 2.327325 ACAGAGACAGAAGGCCCTTA 57.673 50.000 0.00 0.00 0.00 2.69
6399 9865 1.439543 AACAGAGACAGAAGGCCCTT 58.560 50.000 0.00 0.00 0.00 3.95
6400 9866 1.439543 AAACAGAGACAGAAGGCCCT 58.560 50.000 0.00 0.00 0.00 5.19
6401 9867 1.882623 CAAAACAGAGACAGAAGGCCC 59.117 52.381 0.00 0.00 0.00 5.80
6402 9868 1.882623 CCAAAACAGAGACAGAAGGCC 59.117 52.381 0.00 0.00 0.00 5.19
6403 9869 2.851195 TCCAAAACAGAGACAGAAGGC 58.149 47.619 0.00 0.00 0.00 4.35
6404 9870 3.565902 GGTTCCAAAACAGAGACAGAAGG 59.434 47.826 0.00 0.00 37.10 3.46
6405 9871 3.248602 CGGTTCCAAAACAGAGACAGAAG 59.751 47.826 0.00 0.00 37.10 2.85
6406 9872 3.202906 CGGTTCCAAAACAGAGACAGAA 58.797 45.455 0.00 0.00 37.10 3.02
6407 9873 2.484770 CCGGTTCCAAAACAGAGACAGA 60.485 50.000 0.00 0.00 37.10 3.41
6408 9874 1.873591 CCGGTTCCAAAACAGAGACAG 59.126 52.381 0.00 0.00 37.10 3.51
6409 9875 1.487142 TCCGGTTCCAAAACAGAGACA 59.513 47.619 0.00 0.00 37.10 3.41
6410 9876 1.871676 GTCCGGTTCCAAAACAGAGAC 59.128 52.381 0.00 0.00 37.10 3.36
6411 9877 1.766496 AGTCCGGTTCCAAAACAGAGA 59.234 47.619 0.00 0.00 37.10 3.10
6412 9878 2.256117 AGTCCGGTTCCAAAACAGAG 57.744 50.000 0.00 0.00 37.10 3.35
6413 9879 3.842007 TTAGTCCGGTTCCAAAACAGA 57.158 42.857 0.00 0.00 37.10 3.41
6414 9880 4.261447 CCTTTTAGTCCGGTTCCAAAACAG 60.261 45.833 0.00 0.00 37.10 3.16
6415 9881 3.633065 CCTTTTAGTCCGGTTCCAAAACA 59.367 43.478 0.00 0.00 37.10 2.83
6416 9882 3.633525 ACCTTTTAGTCCGGTTCCAAAAC 59.366 43.478 0.00 0.00 34.46 2.43
6417 9883 3.884693 GACCTTTTAGTCCGGTTCCAAAA 59.115 43.478 0.00 3.72 0.00 2.44
6418 9884 3.479489 GACCTTTTAGTCCGGTTCCAAA 58.521 45.455 0.00 0.00 0.00 3.28
6419 9885 2.548493 CGACCTTTTAGTCCGGTTCCAA 60.548 50.000 0.00 0.00 32.91 3.53
6420 9886 1.001181 CGACCTTTTAGTCCGGTTCCA 59.999 52.381 0.00 0.00 32.91 3.53
6421 9887 1.001293 ACGACCTTTTAGTCCGGTTCC 59.999 52.381 0.00 0.00 32.91 3.62
6422 9888 2.445565 ACGACCTTTTAGTCCGGTTC 57.554 50.000 0.00 0.00 32.91 3.62
6423 9889 2.916702 AACGACCTTTTAGTCCGGTT 57.083 45.000 0.00 0.00 32.91 4.44
6424 9890 2.893489 AGTAACGACCTTTTAGTCCGGT 59.107 45.455 0.00 0.00 32.91 5.28
6425 9891 3.582714 AGTAACGACCTTTTAGTCCGG 57.417 47.619 0.00 0.00 32.91 5.14
6426 9892 5.005107 GCATTAGTAACGACCTTTTAGTCCG 59.995 44.000 0.00 0.00 32.91 4.79
6427 9893 5.292834 GGCATTAGTAACGACCTTTTAGTCC 59.707 44.000 0.00 0.00 32.91 3.85
6428 9894 5.292834 GGGCATTAGTAACGACCTTTTAGTC 59.707 44.000 0.00 0.00 0.00 2.59
6429 9895 5.046087 AGGGCATTAGTAACGACCTTTTAGT 60.046 40.000 0.00 0.00 0.00 2.24
6430 9896 5.425630 AGGGCATTAGTAACGACCTTTTAG 58.574 41.667 0.00 0.00 0.00 1.85
6431 9897 5.425196 AGGGCATTAGTAACGACCTTTTA 57.575 39.130 0.00 0.00 0.00 1.52
6432 9898 4.296621 AGGGCATTAGTAACGACCTTTT 57.703 40.909 0.00 0.00 0.00 2.27
6433 9899 3.994931 AGGGCATTAGTAACGACCTTT 57.005 42.857 0.00 0.00 0.00 3.11
6434 9900 3.606687 CAAGGGCATTAGTAACGACCTT 58.393 45.455 10.39 10.39 37.33 3.50
6435 9901 2.093128 CCAAGGGCATTAGTAACGACCT 60.093 50.000 0.00 0.00 0.00 3.85
6436 9902 2.285977 CCAAGGGCATTAGTAACGACC 58.714 52.381 0.00 0.00 0.00 4.79
6450 9916 1.075536 ACCAAGACTAAAGGCCAAGGG 59.924 52.381 5.01 0.00 0.00 3.95
6451 9917 2.586648 ACCAAGACTAAAGGCCAAGG 57.413 50.000 5.01 0.00 0.00 3.61
6452 9918 3.756117 AGAACCAAGACTAAAGGCCAAG 58.244 45.455 5.01 1.14 0.00 3.61
6453 9919 3.876309 AGAACCAAGACTAAAGGCCAA 57.124 42.857 5.01 0.00 0.00 4.52
6454 9920 3.876309 AAGAACCAAGACTAAAGGCCA 57.124 42.857 5.01 0.00 0.00 5.36
6455 9921 4.454847 GTGTAAGAACCAAGACTAAAGGCC 59.545 45.833 0.00 0.00 0.00 5.19
6456 9922 4.151867 CGTGTAAGAACCAAGACTAAAGGC 59.848 45.833 0.00 0.00 0.00 4.35
6457 9923 5.535333 TCGTGTAAGAACCAAGACTAAAGG 58.465 41.667 0.00 0.00 0.00 3.11
6458 9924 6.346678 GCTTCGTGTAAGAACCAAGACTAAAG 60.347 42.308 0.00 0.00 37.38 1.85
6459 9925 5.464389 GCTTCGTGTAAGAACCAAGACTAAA 59.536 40.000 0.00 0.00 37.38 1.85
6460 9926 4.986659 GCTTCGTGTAAGAACCAAGACTAA 59.013 41.667 0.00 0.00 37.38 2.24
6461 9927 4.553323 GCTTCGTGTAAGAACCAAGACTA 58.447 43.478 0.00 0.00 37.38 2.59
6462 9928 3.391049 GCTTCGTGTAAGAACCAAGACT 58.609 45.455 0.00 0.00 37.38 3.24
6463 9929 2.155155 CGCTTCGTGTAAGAACCAAGAC 59.845 50.000 0.00 0.00 37.38 3.01
6464 9930 2.400399 CGCTTCGTGTAAGAACCAAGA 58.600 47.619 0.00 0.00 37.38 3.02
6465 9931 1.459592 CCGCTTCGTGTAAGAACCAAG 59.540 52.381 0.00 0.00 37.38 3.61
6466 9932 1.504359 CCGCTTCGTGTAAGAACCAA 58.496 50.000 0.00 0.00 37.38 3.67
6467 9933 0.320073 CCCGCTTCGTGTAAGAACCA 60.320 55.000 0.00 0.00 37.38 3.67
6468 9934 0.037975 TCCCGCTTCGTGTAAGAACC 60.038 55.000 0.00 0.00 37.38 3.62
6469 9935 1.066136 GTCCCGCTTCGTGTAAGAAC 58.934 55.000 0.00 0.00 37.38 3.01
6470 9936 0.675083 TGTCCCGCTTCGTGTAAGAA 59.325 50.000 0.00 0.00 37.38 2.52
6471 9937 0.242825 CTGTCCCGCTTCGTGTAAGA 59.757 55.000 0.00 0.00 37.38 2.10
6472 9938 0.242825 TCTGTCCCGCTTCGTGTAAG 59.757 55.000 0.00 0.00 38.32 2.34
6473 9939 0.892755 ATCTGTCCCGCTTCGTGTAA 59.107 50.000 0.00 0.00 0.00 2.41
6474 9940 0.172578 CATCTGTCCCGCTTCGTGTA 59.827 55.000 0.00 0.00 0.00 2.90
6475 9941 1.079819 CATCTGTCCCGCTTCGTGT 60.080 57.895 0.00 0.00 0.00 4.49
6476 9942 1.811266 CCATCTGTCCCGCTTCGTG 60.811 63.158 0.00 0.00 0.00 4.35
6477 9943 2.579201 CCATCTGTCCCGCTTCGT 59.421 61.111 0.00 0.00 0.00 3.85
6478 9944 2.202932 CCCATCTGTCCCGCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
6479 9945 2.514824 GCCCATCTGTCCCGCTTC 60.515 66.667 0.00 0.00 0.00 3.86
6480 9946 4.115199 GGCCCATCTGTCCCGCTT 62.115 66.667 0.00 0.00 0.00 4.68
6482 9948 4.554036 GAGGCCCATCTGTCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
6483 9949 3.866582 GGAGGCCCATCTGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
6484 9950 2.692368 TGGAGGCCCATCTGTCCC 60.692 66.667 0.00 0.00 37.58 4.46
6485 9951 2.592308 GTGGAGGCCCATCTGTCC 59.408 66.667 0.00 0.00 45.68 4.02
6486 9952 2.187946 CGTGGAGGCCCATCTGTC 59.812 66.667 0.00 0.00 45.68 3.51
6487 9953 2.607750 ACGTGGAGGCCCATCTGT 60.608 61.111 0.00 0.00 45.68 3.41
6488 9954 2.124983 CACGTGGAGGCCCATCTG 60.125 66.667 7.95 0.00 45.68 2.90
6489 9955 3.402681 CCACGTGGAGGCCCATCT 61.403 66.667 31.31 0.00 45.68 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.