Multiple sequence alignment - TraesCS6D01G111700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G111700 chr6D 100.000 3290 0 0 1 3290 78273248 78269959 0.000000e+00 6076
1 TraesCS6D01G111700 chr6A 91.814 2822 164 46 1 2803 93820627 93817854 0.000000e+00 3869
2 TraesCS6D01G111700 chr6A 94.488 127 6 1 2869 2995 93817763 93817638 9.310000e-46 195
3 TraesCS6D01G111700 chr6B 92.372 2635 124 32 38 2636 151136021 151133428 0.000000e+00 3681
4 TraesCS6D01G111700 chr4D 97.000 200 6 0 3062 3261 385362970 385362771 1.460000e-88 337
5 TraesCS6D01G111700 chr4B 95.122 205 10 0 3061 3265 218904623 218904419 1.140000e-84 324
6 TraesCS6D01G111700 chr3D 95.000 200 10 0 3063 3262 602049579 602049778 6.850000e-82 315
7 TraesCS6D01G111700 chrUn 93.269 208 14 0 3058 3265 24549099 24548892 1.150000e-79 307
8 TraesCS6D01G111700 chr1A 92.891 211 15 0 3053 3263 58166630 58166420 1.150000e-79 307
9 TraesCS6D01G111700 chr7B 94.030 201 12 0 3063 3263 602020487 602020287 4.120000e-79 305
10 TraesCS6D01G111700 chr5A 93.204 206 14 0 3060 3265 525259255 525259460 1.480000e-78 303
11 TraesCS6D01G111700 chr5D 93.171 205 14 0 3061 3265 439260303 439260507 5.340000e-78 302
12 TraesCS6D01G111700 chr4A 92.019 213 14 3 3055 3265 503041189 503041400 2.480000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G111700 chr6D 78269959 78273248 3289 True 6076 6076 100.000 1 3290 1 chr6D.!!$R1 3289
1 TraesCS6D01G111700 chr6A 93817638 93820627 2989 True 2032 3869 93.151 1 2995 2 chr6A.!!$R1 2994
2 TraesCS6D01G111700 chr6B 151133428 151136021 2593 True 3681 3681 92.372 38 2636 1 chr6B.!!$R1 2598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.646381 TTGTGGTGTTCGTTCGTTCG 59.354 50.0 0.0 0.0 0.00 3.95 F
1545 1565 0.389948 ATTTCCAGCAGTCGTCCGAC 60.390 55.0 11.7 11.7 44.86 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 1955 2.029918 CAGTAAACAGGGGAAGCAAAGC 60.030 50.0 0.0 0.0 0.00 3.51 R
2750 2793 0.104855 CTCGGCACTGCTATAAGGCA 59.895 55.0 0.0 0.0 40.15 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.610522 GAAGATTTGGCATGGATCCGG 59.389 52.381 7.39 0.00 0.00 5.14
27 28 2.124320 CATGGATCCGGGCCGTTT 60.124 61.111 26.32 11.77 0.00 3.60
32 33 1.673009 GATCCGGGCCGTTTTGTGA 60.673 57.895 26.32 14.10 0.00 3.58
64 65 1.464722 TTTTTCCCCCTCCCAGCAG 59.535 57.895 0.00 0.00 0.00 4.24
103 104 2.683867 AGCCGTATCTGTGACTCTGTAC 59.316 50.000 0.00 0.00 0.00 2.90
142 143 0.812412 CCCTTGTGGTGTTCGTTCGT 60.812 55.000 0.00 0.00 0.00 3.85
143 144 1.011333 CCTTGTGGTGTTCGTTCGTT 58.989 50.000 0.00 0.00 0.00 3.85
144 145 1.004292 CCTTGTGGTGTTCGTTCGTTC 60.004 52.381 0.00 0.00 0.00 3.95
145 146 0.646381 TTGTGGTGTTCGTTCGTTCG 59.354 50.000 0.00 0.00 0.00 3.95
147 148 2.239124 TGGTGTTCGTTCGTTCGGC 61.239 57.895 2.85 0.00 0.00 5.54
148 149 2.166985 GTGTTCGTTCGTTCGGCG 59.833 61.111 0.00 0.00 43.01 6.46
161 162 1.390463 GTTCGGCGAGCTTTAACAGAG 59.610 52.381 16.77 0.00 0.00 3.35
203 208 9.373603 GGGATCTTCTTAGTTACTCTTTTCTTC 57.626 37.037 0.00 0.00 0.00 2.87
212 217 1.859080 ACTCTTTTCTTCGTGCGTGTC 59.141 47.619 0.00 0.00 0.00 3.67
213 218 1.858458 CTCTTTTCTTCGTGCGTGTCA 59.142 47.619 0.00 0.00 0.00 3.58
214 219 1.591158 TCTTTTCTTCGTGCGTGTCAC 59.409 47.619 0.00 0.00 42.23 3.67
231 237 2.228822 GTCACATGGGTTAACTTGCTGG 59.771 50.000 5.42 0.00 0.00 4.85
244 250 3.801129 GCTGGCTTTCGGCTACTC 58.199 61.111 0.00 0.00 44.20 2.59
246 252 1.519455 CTGGCTTTCGGCTACTCGG 60.519 63.158 0.00 0.00 41.46 4.63
262 268 3.990092 ACTCGGCGCATAGATTTTGATA 58.010 40.909 10.83 0.00 0.00 2.15
281 287 6.507958 TGATAAATTTCTTGTGCGGAATCA 57.492 33.333 0.00 0.00 0.00 2.57
285 291 1.896220 TTCTTGTGCGGAATCAGCTT 58.104 45.000 6.95 0.00 35.28 3.74
291 297 1.129437 GTGCGGAATCAGCTTCAGTTC 59.871 52.381 6.95 0.00 35.41 3.01
326 334 3.187637 TGTGTTGATTAGTTTACTGCGCC 59.812 43.478 4.18 0.00 0.00 6.53
353 361 4.348754 TGATTCATCAGGGCATGTGATCTA 59.651 41.667 0.00 0.00 32.06 1.98
400 411 3.766151 CATGTGATGCTTCCATGTTGTC 58.234 45.455 16.32 0.00 33.06 3.18
429 440 8.256887 GGATTCTTTCCCCAATTTCTGGAACC 62.257 46.154 0.00 0.00 46.04 3.62
449 460 1.487482 GCTTGTTTTTGTCTTCCGCC 58.513 50.000 0.00 0.00 0.00 6.13
463 474 2.671619 CGCCGAATGGTGGGTTGT 60.672 61.111 0.00 0.00 42.32 3.32
493 504 6.847956 TCTCTTTGAATGTTTTGGCATTTG 57.152 33.333 0.00 0.00 38.98 2.32
518 529 7.039722 AGGGGGAATGTTTTCATAGACTTTA 57.960 36.000 0.00 0.00 39.94 1.85
542 553 2.669391 GCACACAAGTAAGATGGCTTGC 60.669 50.000 4.45 0.00 44.12 4.01
568 580 7.703298 TTTTCTTCTCTGCACATTTGAATTG 57.297 32.000 0.00 0.00 0.00 2.32
571 583 7.137490 TCTTCTCTGCACATTTGAATTGTAG 57.863 36.000 0.00 0.00 0.00 2.74
575 589 6.486320 TCTCTGCACATTTGAATTGTAGTTGA 59.514 34.615 0.00 0.00 0.00 3.18
593 607 5.140454 AGTTGATGGCCATAGTAAATTCCC 58.860 41.667 20.84 2.13 0.00 3.97
598 612 6.614906 TGATGGCCATAGTAAATTCCCAATTT 59.385 34.615 20.84 0.00 43.19 1.82
599 613 6.478512 TGGCCATAGTAAATTCCCAATTTC 57.521 37.500 0.00 0.00 41.16 2.17
609 623 9.777008 AGTAAATTCCCAATTTCCTAAATGGTA 57.223 29.630 0.00 0.00 41.16 3.25
610 624 9.811995 GTAAATTCCCAATTTCCTAAATGGTAC 57.188 33.333 0.00 0.00 41.16 3.34
611 625 7.432148 AATTCCCAATTTCCTAAATGGTACC 57.568 36.000 4.43 4.43 37.07 3.34
779 795 3.788933 AGGGAGATGATAGATGTGAGGG 58.211 50.000 0.00 0.00 0.00 4.30
780 796 2.836981 GGGAGATGATAGATGTGAGGGG 59.163 54.545 0.00 0.00 0.00 4.79
892 908 2.408271 TCTGTTGTGATGGAGATGCC 57.592 50.000 0.00 0.00 37.10 4.40
952 968 6.093219 AGACTAAGTTGACATGCTGCTTTATG 59.907 38.462 0.00 0.00 0.00 1.90
996 1012 6.515272 AGATACATTTGGTAGGCAAAGTTG 57.485 37.500 0.00 0.00 34.92 3.16
1227 1247 0.601558 TCGAGCGGTTTAAGAGTGCT 59.398 50.000 0.00 0.00 38.89 4.40
1317 1337 5.913137 TCTCTTCAAACACAAACAACCAT 57.087 34.783 0.00 0.00 0.00 3.55
1407 1427 5.474876 CCTTAACCAGAAGAAAAGATGCTGT 59.525 40.000 0.00 0.00 0.00 4.40
1545 1565 0.389948 ATTTCCAGCAGTCGTCCGAC 60.390 55.000 11.70 11.70 44.86 4.79
1605 1625 4.346418 CCTAACAGCATAGTTCTGGGAGAT 59.654 45.833 0.00 0.00 35.94 2.75
1623 1643 5.105752 GGAGATTATGTCATCGAGTATGGC 58.894 45.833 0.00 0.00 40.84 4.40
1641 1661 1.338864 GGCGATGATGATGCTGGAGAT 60.339 52.381 0.00 0.00 0.00 2.75
1935 1955 4.877823 AGTCATTACAGGTGTGTGCATATG 59.122 41.667 0.00 0.00 37.52 1.78
2022 2045 3.186702 GAGAATTACCTCTCTGGCCAC 57.813 52.381 0.00 0.00 39.08 5.01
2082 2108 3.868619 AGGTGCCACTTTAACCACTAA 57.131 42.857 0.00 0.00 36.37 2.24
2157 2183 8.126074 TGTATGCCGCATTTATAACTGTAAAAG 58.874 33.333 11.97 0.00 0.00 2.27
2194 2221 7.345914 ACCAGAAACTATAACAGATCCTAGCTT 59.654 37.037 0.00 0.00 0.00 3.74
2209 2236 5.240891 TCCTAGCTTCTCATGTTTCACTTG 58.759 41.667 0.00 0.00 0.00 3.16
2211 2238 4.090761 AGCTTCTCATGTTTCACTTGGA 57.909 40.909 0.00 0.00 0.00 3.53
2222 2249 4.101585 TGTTTCACTTGGACAGTCTCTGAT 59.898 41.667 0.00 0.00 35.18 2.90
2225 2252 3.440522 TCACTTGGACAGTCTCTGATACG 59.559 47.826 0.00 0.00 35.18 3.06
2227 2254 2.130272 TGGACAGTCTCTGATACGCT 57.870 50.000 0.00 0.00 35.18 5.07
2228 2255 1.745653 TGGACAGTCTCTGATACGCTG 59.254 52.381 0.00 0.00 35.18 5.18
2231 2258 3.377485 GGACAGTCTCTGATACGCTGTTA 59.623 47.826 0.00 0.00 40.06 2.41
2236 2263 6.531948 ACAGTCTCTGATACGCTGTTATTTTC 59.468 38.462 3.70 0.00 37.12 2.29
2237 2264 5.744345 AGTCTCTGATACGCTGTTATTTTCG 59.256 40.000 0.00 0.00 0.00 3.46
2241 2268 6.530567 TCTGATACGCTGTTATTTTCGTTTG 58.469 36.000 0.00 0.00 36.50 2.93
2242 2269 6.366604 TCTGATACGCTGTTATTTTCGTTTGA 59.633 34.615 0.00 0.00 36.50 2.69
2243 2270 7.064134 TCTGATACGCTGTTATTTTCGTTTGAT 59.936 33.333 0.00 0.00 36.50 2.57
2244 2271 7.177407 TGATACGCTGTTATTTTCGTTTGATC 58.823 34.615 0.00 0.00 36.50 2.92
2245 2272 5.351233 ACGCTGTTATTTTCGTTTGATCA 57.649 34.783 0.00 0.00 0.00 2.92
2347 2384 2.589157 CCACCTCCACCGCCTGTTA 61.589 63.158 0.00 0.00 0.00 2.41
2419 2460 2.509916 GATAGCAGCAGCAGGCCT 59.490 61.111 0.00 0.00 46.50 5.19
2441 2482 3.000727 CCGTTATTGTTCACAGGTCTCC 58.999 50.000 0.00 0.00 0.00 3.71
2497 2538 8.315220 ACTTAGCCTTTACTACCTTATAGCAA 57.685 34.615 0.00 0.00 0.00 3.91
2498 2539 8.765517 ACTTAGCCTTTACTACCTTATAGCAAA 58.234 33.333 0.00 0.00 0.00 3.68
2499 2540 9.780186 CTTAGCCTTTACTACCTTATAGCAAAT 57.220 33.333 0.00 0.00 0.00 2.32
2502 2543 8.711170 AGCCTTTACTACCTTATAGCAAATGTA 58.289 33.333 0.00 0.00 0.00 2.29
2638 2681 3.815401 CCTGTAGAAAGAAGGTTGTGTGG 59.185 47.826 0.00 0.00 0.00 4.17
2639 2682 4.444306 CCTGTAGAAAGAAGGTTGTGTGGA 60.444 45.833 0.00 0.00 0.00 4.02
2640 2683 5.105567 TGTAGAAAGAAGGTTGTGTGGAA 57.894 39.130 0.00 0.00 0.00 3.53
2641 2684 5.690865 TGTAGAAAGAAGGTTGTGTGGAAT 58.309 37.500 0.00 0.00 0.00 3.01
2645 2688 1.963515 AGAAGGTTGTGTGGAATTGCC 59.036 47.619 0.00 0.00 37.10 4.52
2650 2693 1.175983 TTGTGTGGAATTGCCGGGTC 61.176 55.000 2.18 0.00 40.66 4.46
2655 2698 1.303317 GGAATTGCCGGGTCTGTGT 60.303 57.895 2.18 0.00 0.00 3.72
2662 2705 3.349006 CGGGTCTGTGTGCTGTGC 61.349 66.667 0.00 0.00 0.00 4.57
2663 2706 2.111878 GGGTCTGTGTGCTGTGCT 59.888 61.111 0.00 0.00 0.00 4.40
2664 2707 1.526917 GGGTCTGTGTGCTGTGCTT 60.527 57.895 0.00 0.00 0.00 3.91
2666 2709 0.029834 GGTCTGTGTGCTGTGCTTTG 59.970 55.000 0.00 0.00 0.00 2.77
2667 2710 0.029834 GTCTGTGTGCTGTGCTTTGG 59.970 55.000 0.00 0.00 0.00 3.28
2668 2711 0.394216 TCTGTGTGCTGTGCTTTGGT 60.394 50.000 0.00 0.00 0.00 3.67
2669 2712 1.134250 TCTGTGTGCTGTGCTTTGGTA 60.134 47.619 0.00 0.00 0.00 3.25
2670 2713 1.881973 CTGTGTGCTGTGCTTTGGTAT 59.118 47.619 0.00 0.00 0.00 2.73
2671 2714 1.879380 TGTGTGCTGTGCTTTGGTATC 59.121 47.619 0.00 0.00 0.00 2.24
2672 2715 1.879380 GTGTGCTGTGCTTTGGTATCA 59.121 47.619 0.00 0.00 0.00 2.15
2673 2716 2.095567 GTGTGCTGTGCTTTGGTATCAG 60.096 50.000 0.00 0.00 0.00 2.90
2674 2717 2.224499 TGTGCTGTGCTTTGGTATCAGA 60.224 45.455 0.00 0.00 0.00 3.27
2675 2718 2.813754 GTGCTGTGCTTTGGTATCAGAA 59.186 45.455 0.00 0.00 0.00 3.02
2687 2730 7.630242 TTTGGTATCAGAATCCTTCATTGTC 57.370 36.000 0.00 0.00 0.00 3.18
2692 2735 4.445453 TCAGAATCCTTCATTGTCCATCG 58.555 43.478 0.00 0.00 0.00 3.84
2701 2744 1.315257 ATTGTCCATCGGCAACAGGC 61.315 55.000 0.00 0.00 43.74 4.85
2717 2760 3.425422 GCCTTGCCATCATCCGTC 58.575 61.111 0.00 0.00 0.00 4.79
2739 2782 7.495934 CCGTCTCAGGTTCTTCATGTAAATATT 59.504 37.037 0.00 0.00 0.00 1.28
2740 2783 8.543774 CGTCTCAGGTTCTTCATGTAAATATTC 58.456 37.037 0.00 0.00 0.00 1.75
2742 2785 9.605275 TCTCAGGTTCTTCATGTAAATATTCAG 57.395 33.333 0.00 0.00 0.00 3.02
2746 2789 8.680903 AGGTTCTTCATGTAAATATTCAGCTTG 58.319 33.333 0.00 0.00 0.00 4.01
2747 2790 7.917505 GGTTCTTCATGTAAATATTCAGCTTGG 59.082 37.037 0.00 0.00 0.00 3.61
2768 2811 2.207580 TGCCTTATAGCAGTGCCGA 58.792 52.632 12.58 0.00 38.00 5.54
2803 2846 4.104143 CGGAACCGCCTGTATGTC 57.896 61.111 0.00 0.00 0.00 3.06
2804 2847 1.216977 CGGAACCGCCTGTATGTCA 59.783 57.895 0.00 0.00 0.00 3.58
2805 2848 0.390603 CGGAACCGCCTGTATGTCAA 60.391 55.000 0.00 0.00 0.00 3.18
2806 2849 1.816074 GGAACCGCCTGTATGTCAAA 58.184 50.000 0.00 0.00 0.00 2.69
2807 2850 2.156098 GGAACCGCCTGTATGTCAAAA 58.844 47.619 0.00 0.00 0.00 2.44
2808 2851 2.554893 GGAACCGCCTGTATGTCAAAAA 59.445 45.455 0.00 0.00 0.00 1.94
2809 2852 3.561503 GAACCGCCTGTATGTCAAAAAC 58.438 45.455 0.00 0.00 0.00 2.43
2814 2857 4.806247 CCGCCTGTATGTCAAAAACAAAAA 59.194 37.500 0.00 0.00 42.37 1.94
2828 2871 2.975799 AAAAAGAAGGCCGCGCGA 60.976 55.556 34.63 0.00 0.00 5.87
2865 2945 4.637483 AACTGTTCCATTGGATATTGCG 57.363 40.909 6.15 0.00 0.00 4.85
2866 2946 3.620488 ACTGTTCCATTGGATATTGCGT 58.380 40.909 6.15 0.00 0.00 5.24
2867 2947 4.016444 ACTGTTCCATTGGATATTGCGTT 58.984 39.130 6.15 0.00 0.00 4.84
2868 2948 4.462483 ACTGTTCCATTGGATATTGCGTTT 59.538 37.500 6.15 0.00 0.00 3.60
2869 2949 5.047377 ACTGTTCCATTGGATATTGCGTTTT 60.047 36.000 6.15 0.00 0.00 2.43
2870 2950 5.788450 TGTTCCATTGGATATTGCGTTTTT 58.212 33.333 6.15 0.00 0.00 1.94
2871 2951 5.866633 TGTTCCATTGGATATTGCGTTTTTC 59.133 36.000 6.15 0.00 0.00 2.29
2891 2971 6.451064 TTTCTCTGTGAAAAGGAAGGTTTC 57.549 37.500 2.65 0.00 41.23 2.78
2897 2977 3.951680 GTGAAAAGGAAGGTTTCTGTGGA 59.048 43.478 0.00 0.00 36.22 4.02
2898 2978 3.951680 TGAAAAGGAAGGTTTCTGTGGAC 59.048 43.478 0.00 0.00 36.22 4.02
2921 3001 2.633657 GTTGTGTGCTGTGCTCCG 59.366 61.111 0.00 0.00 0.00 4.63
2929 3009 3.730761 CTGTGCTCCGCTTGTGCC 61.731 66.667 0.00 0.00 35.36 5.01
2995 3075 3.253921 TCTGAATGAATGCCACTTGTGTG 59.746 43.478 0.00 0.00 43.45 3.82
2996 3076 2.288334 TGAATGAATGCCACTTGTGTGC 60.288 45.455 0.00 4.10 42.54 4.57
2997 3077 0.604578 ATGAATGCCACTTGTGTGCC 59.395 50.000 10.19 0.00 42.54 5.01
2998 3078 1.081242 GAATGCCACTTGTGTGCCG 60.081 57.895 10.19 0.00 42.54 5.69
2999 3079 1.795170 GAATGCCACTTGTGTGCCGT 61.795 55.000 10.19 1.38 42.54 5.68
3000 3080 1.795170 AATGCCACTTGTGTGCCGTC 61.795 55.000 10.19 0.00 42.54 4.79
3001 3081 2.591715 GCCACTTGTGTGCCGTCT 60.592 61.111 0.00 0.00 42.54 4.18
3002 3082 1.301401 GCCACTTGTGTGCCGTCTA 60.301 57.895 0.00 0.00 42.54 2.59
3003 3083 1.566018 GCCACTTGTGTGCCGTCTAC 61.566 60.000 0.00 0.00 42.54 2.59
3004 3084 0.033504 CCACTTGTGTGCCGTCTACT 59.966 55.000 0.00 0.00 42.54 2.57
3005 3085 1.419374 CACTTGTGTGCCGTCTACTC 58.581 55.000 0.00 0.00 37.38 2.59
3006 3086 0.317479 ACTTGTGTGCCGTCTACTCC 59.683 55.000 0.00 0.00 0.00 3.85
3007 3087 0.389948 CTTGTGTGCCGTCTACTCCC 60.390 60.000 0.00 0.00 0.00 4.30
3008 3088 0.830444 TTGTGTGCCGTCTACTCCCT 60.830 55.000 0.00 0.00 0.00 4.20
3009 3089 1.248785 TGTGTGCCGTCTACTCCCTC 61.249 60.000 0.00 0.00 0.00 4.30
3010 3090 1.681327 TGTGCCGTCTACTCCCTCC 60.681 63.158 0.00 0.00 0.00 4.30
3011 3091 2.439701 TGCCGTCTACTCCCTCCG 60.440 66.667 0.00 0.00 0.00 4.63
3012 3092 2.439883 GCCGTCTACTCCCTCCGT 60.440 66.667 0.00 0.00 0.00 4.69
3013 3093 2.479750 GCCGTCTACTCCCTCCGTC 61.480 68.421 0.00 0.00 0.00 4.79
3014 3094 1.823041 CCGTCTACTCCCTCCGTCC 60.823 68.421 0.00 0.00 0.00 4.79
3015 3095 1.823041 CGTCTACTCCCTCCGTCCC 60.823 68.421 0.00 0.00 0.00 4.46
3016 3096 1.305623 GTCTACTCCCTCCGTCCCA 59.694 63.158 0.00 0.00 0.00 4.37
3017 3097 0.106116 GTCTACTCCCTCCGTCCCAT 60.106 60.000 0.00 0.00 0.00 4.00
3018 3098 1.144503 GTCTACTCCCTCCGTCCCATA 59.855 57.143 0.00 0.00 0.00 2.74
3019 3099 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3020 3100 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3021 3101 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3022 3102 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3023 3103 1.070758 CTCCCTCCGTCCCATAATGTG 59.929 57.143 0.00 0.00 0.00 3.21
3024 3104 0.837272 CCCTCCGTCCCATAATGTGT 59.163 55.000 0.00 0.00 0.00 3.72
3025 3105 1.202651 CCCTCCGTCCCATAATGTGTC 60.203 57.143 0.00 0.00 0.00 3.67
3026 3106 1.484653 CCTCCGTCCCATAATGTGTCA 59.515 52.381 0.00 0.00 0.00 3.58
3027 3107 2.093181 CCTCCGTCCCATAATGTGTCAA 60.093 50.000 0.00 0.00 0.00 3.18
3028 3108 3.605634 CTCCGTCCCATAATGTGTCAAA 58.394 45.455 0.00 0.00 0.00 2.69
3029 3109 4.006989 CTCCGTCCCATAATGTGTCAAAA 58.993 43.478 0.00 0.00 0.00 2.44
3030 3110 4.399219 TCCGTCCCATAATGTGTCAAAAA 58.601 39.130 0.00 0.00 0.00 1.94
3063 3143 3.709834 TGGCACAGAGGGAGTATGA 57.290 52.632 0.00 0.00 0.00 2.15
3064 3144 1.489481 TGGCACAGAGGGAGTATGAG 58.511 55.000 0.00 0.00 0.00 2.90
3065 3145 0.105778 GGCACAGAGGGAGTATGAGC 59.894 60.000 0.00 0.00 33.63 4.26
3066 3146 0.826715 GCACAGAGGGAGTATGAGCA 59.173 55.000 0.00 0.00 34.45 4.26
3067 3147 1.415659 GCACAGAGGGAGTATGAGCAT 59.584 52.381 0.00 0.00 34.45 3.79
3068 3148 2.630098 GCACAGAGGGAGTATGAGCATA 59.370 50.000 0.00 0.00 34.45 3.14
3069 3149 3.070159 GCACAGAGGGAGTATGAGCATAA 59.930 47.826 0.00 0.00 34.45 1.90
3070 3150 4.262808 GCACAGAGGGAGTATGAGCATAAT 60.263 45.833 0.00 0.00 34.45 1.28
3071 3151 5.744300 GCACAGAGGGAGTATGAGCATAATT 60.744 44.000 0.00 0.00 34.45 1.40
3072 3152 5.699915 CACAGAGGGAGTATGAGCATAATTG 59.300 44.000 0.00 0.00 0.00 2.32
3073 3153 5.221803 ACAGAGGGAGTATGAGCATAATTGG 60.222 44.000 0.00 0.00 0.00 3.16
3074 3154 4.910304 AGAGGGAGTATGAGCATAATTGGT 59.090 41.667 0.00 0.00 35.95 3.67
3075 3155 5.370880 AGAGGGAGTATGAGCATAATTGGTT 59.629 40.000 0.00 0.00 32.62 3.67
3076 3156 6.018433 AGGGAGTATGAGCATAATTGGTTT 57.982 37.500 0.00 0.00 32.62 3.27
3077 3157 5.829924 AGGGAGTATGAGCATAATTGGTTTG 59.170 40.000 0.00 0.00 32.62 2.93
3078 3158 5.507985 GGGAGTATGAGCATAATTGGTTTGC 60.508 44.000 0.00 0.00 32.62 3.68
3080 3160 6.140303 AGTATGAGCATAATTGGTTTGCTG 57.860 37.500 10.49 0.00 46.21 4.41
3081 3161 3.235157 TGAGCATAATTGGTTTGCTGC 57.765 42.857 10.49 0.00 46.21 5.25
3082 3162 2.094078 TGAGCATAATTGGTTTGCTGCC 60.094 45.455 10.49 1.18 46.21 4.85
3083 3163 1.901159 AGCATAATTGGTTTGCTGCCA 59.099 42.857 0.00 0.00 44.63 4.92
3084 3164 3.617045 GAGCATAATTGGTTTGCTGCCAA 60.617 43.478 10.49 9.04 46.21 4.52
3127 3207 4.681835 GCATTGTGCCAAATATTTGCAA 57.318 36.364 20.67 18.48 37.42 4.08
3128 3208 4.405196 GCATTGTGCCAAATATTTGCAAC 58.595 39.130 20.67 19.05 37.42 4.17
3129 3209 4.154556 GCATTGTGCCAAATATTTGCAACT 59.845 37.500 20.67 0.00 37.42 3.16
3130 3210 5.350914 GCATTGTGCCAAATATTTGCAACTA 59.649 36.000 20.67 16.54 37.42 2.24
3131 3211 6.672836 GCATTGTGCCAAATATTTGCAACTAC 60.673 38.462 20.67 14.05 37.42 2.73
3132 3212 5.720371 TGTGCCAAATATTTGCAACTACT 57.280 34.783 20.67 0.00 36.86 2.57
3133 3213 6.095432 TGTGCCAAATATTTGCAACTACTT 57.905 33.333 20.67 0.00 36.86 2.24
3134 3214 5.925397 TGTGCCAAATATTTGCAACTACTTG 59.075 36.000 20.67 10.12 36.86 3.16
3135 3215 5.348451 GTGCCAAATATTTGCAACTACTTGG 59.652 40.000 24.64 24.64 36.86 3.61
3136 3216 5.011533 TGCCAAATATTTGCAACTACTTGGT 59.988 36.000 27.36 1.07 36.86 3.67
3137 3217 5.931724 GCCAAATATTTGCAACTACTTGGTT 59.068 36.000 27.36 6.40 36.86 3.67
3138 3218 6.128580 GCCAAATATTTGCAACTACTTGGTTG 60.129 38.462 27.36 14.33 46.41 3.77
3139 3219 7.151308 CCAAATATTTGCAACTACTTGGTTGA 58.849 34.615 22.10 0.00 45.64 3.18
3140 3220 7.116233 CCAAATATTTGCAACTACTTGGTTGAC 59.884 37.037 22.10 2.23 45.64 3.18
3141 3221 7.524717 AATATTTGCAACTACTTGGTTGACT 57.475 32.000 9.45 0.00 46.55 3.41
3142 3222 8.630054 AATATTTGCAACTACTTGGTTGACTA 57.370 30.769 9.45 0.00 46.55 2.59
3143 3223 5.744666 TTTGCAACTACTTGGTTGACTAC 57.255 39.130 9.45 0.00 46.55 2.73
3144 3224 3.386486 TGCAACTACTTGGTTGACTACG 58.614 45.455 9.45 0.00 46.55 3.51
3145 3225 3.068448 TGCAACTACTTGGTTGACTACGA 59.932 43.478 9.45 0.00 46.55 3.43
3146 3226 3.673809 GCAACTACTTGGTTGACTACGAG 59.326 47.826 9.45 0.00 46.55 4.18
3147 3227 4.795308 GCAACTACTTGGTTGACTACGAGT 60.795 45.833 9.45 0.00 46.55 4.18
3148 3228 5.287226 CAACTACTTGGTTGACTACGAGTT 58.713 41.667 0.00 0.00 46.55 3.01
3149 3229 4.868067 ACTACTTGGTTGACTACGAGTTG 58.132 43.478 0.00 0.00 0.00 3.16
3150 3230 3.814005 ACTTGGTTGACTACGAGTTGT 57.186 42.857 0.00 0.00 0.00 3.32
3151 3231 4.133013 ACTTGGTTGACTACGAGTTGTT 57.867 40.909 0.00 0.00 0.00 2.83
3152 3232 4.510571 ACTTGGTTGACTACGAGTTGTTT 58.489 39.130 0.00 0.00 0.00 2.83
3153 3233 4.939439 ACTTGGTTGACTACGAGTTGTTTT 59.061 37.500 0.00 0.00 0.00 2.43
3154 3234 4.868450 TGGTTGACTACGAGTTGTTTTG 57.132 40.909 0.00 0.00 0.00 2.44
3155 3235 3.064271 TGGTTGACTACGAGTTGTTTTGC 59.936 43.478 0.00 0.00 0.00 3.68
3156 3236 3.547413 GGTTGACTACGAGTTGTTTTGCC 60.547 47.826 0.00 0.00 0.00 4.52
3157 3237 3.188159 TGACTACGAGTTGTTTTGCCT 57.812 42.857 0.00 0.00 0.00 4.75
3158 3238 4.325028 TGACTACGAGTTGTTTTGCCTA 57.675 40.909 0.00 0.00 0.00 3.93
3159 3239 4.890088 TGACTACGAGTTGTTTTGCCTAT 58.110 39.130 0.00 0.00 0.00 2.57
3160 3240 4.927425 TGACTACGAGTTGTTTTGCCTATC 59.073 41.667 0.00 0.00 0.00 2.08
3161 3241 5.148651 ACTACGAGTTGTTTTGCCTATCT 57.851 39.130 0.00 0.00 0.00 1.98
3162 3242 5.169295 ACTACGAGTTGTTTTGCCTATCTC 58.831 41.667 0.00 0.00 0.00 2.75
3163 3243 4.002906 ACGAGTTGTTTTGCCTATCTCA 57.997 40.909 0.00 0.00 0.00 3.27
3164 3244 3.746492 ACGAGTTGTTTTGCCTATCTCAC 59.254 43.478 0.00 0.00 0.00 3.51
3165 3245 3.745975 CGAGTTGTTTTGCCTATCTCACA 59.254 43.478 0.00 0.00 0.00 3.58
3166 3246 4.393062 CGAGTTGTTTTGCCTATCTCACAT 59.607 41.667 0.00 0.00 0.00 3.21
3167 3247 5.580691 CGAGTTGTTTTGCCTATCTCACATA 59.419 40.000 0.00 0.00 0.00 2.29
3168 3248 6.092122 CGAGTTGTTTTGCCTATCTCACATAA 59.908 38.462 0.00 0.00 0.00 1.90
3169 3249 7.360861 CGAGTTGTTTTGCCTATCTCACATAAA 60.361 37.037 0.00 0.00 0.00 1.40
3170 3250 7.820648 AGTTGTTTTGCCTATCTCACATAAAG 58.179 34.615 0.00 0.00 0.00 1.85
3171 3251 7.448469 AGTTGTTTTGCCTATCTCACATAAAGT 59.552 33.333 0.00 0.00 0.00 2.66
3172 3252 7.759489 TGTTTTGCCTATCTCACATAAAGTT 57.241 32.000 0.00 0.00 0.00 2.66
3173 3253 7.592938 TGTTTTGCCTATCTCACATAAAGTTG 58.407 34.615 0.00 0.00 0.00 3.16
3174 3254 5.818136 TTGCCTATCTCACATAAAGTTGC 57.182 39.130 0.00 0.00 0.00 4.17
3175 3255 4.199310 TGCCTATCTCACATAAAGTTGCC 58.801 43.478 0.00 0.00 0.00 4.52
3176 3256 4.199310 GCCTATCTCACATAAAGTTGCCA 58.801 43.478 0.00 0.00 0.00 4.92
3177 3257 4.640201 GCCTATCTCACATAAAGTTGCCAA 59.360 41.667 0.00 0.00 0.00 4.52
3178 3258 5.300286 GCCTATCTCACATAAAGTTGCCAAT 59.700 40.000 0.00 0.00 0.00 3.16
3179 3259 6.486657 GCCTATCTCACATAAAGTTGCCAATA 59.513 38.462 0.00 0.00 0.00 1.90
3180 3260 7.308229 GCCTATCTCACATAAAGTTGCCAATAG 60.308 40.741 0.00 0.00 0.00 1.73
3181 3261 7.716998 CCTATCTCACATAAAGTTGCCAATAGT 59.283 37.037 0.00 0.00 0.00 2.12
3182 3262 7.944729 ATCTCACATAAAGTTGCCAATAGTT 57.055 32.000 0.00 0.00 0.00 2.24
3183 3263 7.144722 TCTCACATAAAGTTGCCAATAGTTG 57.855 36.000 0.00 0.00 0.00 3.16
3199 3279 7.985476 CCAATAGTTGGTAAGTCTTGGTATTG 58.015 38.462 0.54 0.00 45.93 1.90
3200 3280 7.415206 CCAATAGTTGGTAAGTCTTGGTATTGC 60.415 40.741 0.54 0.00 45.93 3.56
3201 3281 5.242795 AGTTGGTAAGTCTTGGTATTGCT 57.757 39.130 0.00 0.00 0.00 3.91
3202 3282 6.368779 AGTTGGTAAGTCTTGGTATTGCTA 57.631 37.500 0.00 0.00 0.00 3.49
3203 3283 6.775708 AGTTGGTAAGTCTTGGTATTGCTAA 58.224 36.000 0.00 0.00 0.00 3.09
3204 3284 7.402862 AGTTGGTAAGTCTTGGTATTGCTAAT 58.597 34.615 0.00 0.00 0.00 1.73
3205 3285 7.888546 AGTTGGTAAGTCTTGGTATTGCTAATT 59.111 33.333 0.00 0.00 0.00 1.40
3206 3286 8.520351 GTTGGTAAGTCTTGGTATTGCTAATTT 58.480 33.333 0.00 0.00 0.00 1.82
3207 3287 8.644374 TGGTAAGTCTTGGTATTGCTAATTTT 57.356 30.769 0.00 0.00 0.00 1.82
3208 3288 9.084533 TGGTAAGTCTTGGTATTGCTAATTTTT 57.915 29.630 0.00 0.00 0.00 1.94
3221 3301 5.545588 TGCTAATTTTTAGCAATGCCAACA 58.454 33.333 17.16 0.00 46.29 3.33
3222 3302 6.171921 TGCTAATTTTTAGCAATGCCAACAT 58.828 32.000 17.16 0.00 46.29 2.71
3224 3304 7.174599 TGCTAATTTTTAGCAATGCCAACATTT 59.825 29.630 17.16 0.00 44.83 2.32
3225 3305 7.482428 GCTAATTTTTAGCAATGCCAACATTTG 59.518 33.333 13.03 3.17 44.21 2.32
3263 3343 6.884280 GGTAGCAAACCAATTATGCTCTAT 57.116 37.500 2.36 0.00 46.98 1.98
3264 3344 7.979444 GGTAGCAAACCAATTATGCTCTATA 57.021 36.000 2.36 0.00 46.98 1.31
3265 3345 7.807680 GGTAGCAAACCAATTATGCTCTATAC 58.192 38.462 2.36 0.00 46.98 1.47
3266 3346 6.545504 AGCAAACCAATTATGCTCTATACG 57.454 37.500 0.00 0.00 46.98 3.06
3267 3347 6.288294 AGCAAACCAATTATGCTCTATACGA 58.712 36.000 0.00 0.00 46.98 3.43
3268 3348 6.202954 AGCAAACCAATTATGCTCTATACGAC 59.797 38.462 0.00 0.00 46.98 4.34
3269 3349 6.202954 GCAAACCAATTATGCTCTATACGACT 59.797 38.462 0.00 0.00 37.12 4.18
3270 3350 7.567571 CAAACCAATTATGCTCTATACGACTG 58.432 38.462 0.00 0.00 0.00 3.51
3271 3351 5.230942 ACCAATTATGCTCTATACGACTGC 58.769 41.667 0.00 0.00 0.00 4.40
3272 3352 4.324669 CCAATTATGCTCTATACGACTGCG 59.675 45.833 0.00 0.00 44.79 5.18
3273 3353 5.154222 CAATTATGCTCTATACGACTGCGA 58.846 41.667 0.00 0.00 41.64 5.10
3274 3354 5.568685 ATTATGCTCTATACGACTGCGAT 57.431 39.130 0.00 0.00 41.64 4.58
3275 3355 3.924918 ATGCTCTATACGACTGCGATT 57.075 42.857 0.00 0.00 41.64 3.34
3276 3356 3.710326 TGCTCTATACGACTGCGATTT 57.290 42.857 0.00 0.00 41.64 2.17
3277 3357 3.372060 TGCTCTATACGACTGCGATTTG 58.628 45.455 0.00 0.00 41.64 2.32
3278 3358 2.154007 GCTCTATACGACTGCGATTTGC 59.846 50.000 0.00 0.00 46.70 3.68
3287 3367 4.520846 GCGATTTGCGTGCGGGAG 62.521 66.667 0.00 0.00 43.41 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.180782 CGTACAAAAATCACAAAACGGCC 59.819 43.478 0.00 0.00 0.00 6.13
25 26 7.668525 AAAAACCCGTACAAAAATCACAAAA 57.331 28.000 0.00 0.00 0.00 2.44
51 52 0.407918 TAAAAACTGCTGGGAGGGGG 59.592 55.000 0.00 0.00 0.00 5.40
103 104 3.939592 GGGGGAGAACAAGAAATAACTCG 59.060 47.826 0.00 0.00 0.00 4.18
119 120 1.302511 CGAACACCACAAGGGGGAG 60.303 63.158 0.00 0.00 46.16 4.30
120 121 1.637724 AACGAACACCACAAGGGGGA 61.638 55.000 0.00 0.00 46.16 4.81
142 143 1.710013 CTCTGTTAAAGCTCGCCGAA 58.290 50.000 0.00 0.00 0.00 4.30
143 144 0.736325 GCTCTGTTAAAGCTCGCCGA 60.736 55.000 0.00 0.00 36.80 5.54
144 145 1.710339 GCTCTGTTAAAGCTCGCCG 59.290 57.895 0.00 0.00 36.80 6.46
150 151 6.025749 ACCCAAAATTAGCTCTGTTAAAGC 57.974 37.500 0.00 0.00 40.14 3.51
151 152 9.626045 CTAAACCCAAAATTAGCTCTGTTAAAG 57.374 33.333 0.00 0.00 0.00 1.85
161 162 6.607600 AGAAGATCCCTAAACCCAAAATTAGC 59.392 38.462 0.00 0.00 0.00 3.09
212 217 1.067635 GCCAGCAAGTTAACCCATGTG 60.068 52.381 0.88 1.84 0.00 3.21
213 218 1.203050 AGCCAGCAAGTTAACCCATGT 60.203 47.619 0.88 0.00 0.00 3.21
214 219 1.549203 AGCCAGCAAGTTAACCCATG 58.451 50.000 0.88 0.69 0.00 3.66
231 237 3.255379 CGCCGAGTAGCCGAAAGC 61.255 66.667 0.00 0.00 44.25 3.51
242 248 4.990543 TTATCAAAATCTATGCGCCGAG 57.009 40.909 4.18 1.28 0.00 4.63
244 250 6.857964 AGAAATTTATCAAAATCTATGCGCCG 59.142 34.615 4.18 0.00 34.12 6.46
246 252 9.023967 ACAAGAAATTTATCAAAATCTATGCGC 57.976 29.630 0.00 0.00 34.12 6.09
262 268 3.256631 AGCTGATTCCGCACAAGAAATTT 59.743 39.130 2.83 0.00 0.00 1.82
353 361 7.227314 GCCCTGATTTCTTTTTCTTTTTCACAT 59.773 33.333 0.00 0.00 0.00 3.21
429 440 1.120437 GCGGAAGACAAAAACAAGCG 58.880 50.000 0.00 0.00 0.00 4.68
449 460 0.536233 TGACCACAACCCACCATTCG 60.536 55.000 0.00 0.00 0.00 3.34
493 504 5.117406 AGTCTATGAAAACATTCCCCCTC 57.883 43.478 0.00 0.00 0.00 4.30
518 529 4.494091 AGCCATCTTACTTGTGTGCTAT 57.506 40.909 0.00 0.00 0.00 2.97
542 553 7.941795 ATTCAAATGTGCAGAGAAGAAAAAG 57.058 32.000 0.00 0.00 0.00 2.27
549 560 6.882610 ACTACAATTCAAATGTGCAGAGAA 57.117 33.333 0.00 0.00 32.27 2.87
568 580 6.206829 GGGAATTTACTATGGCCATCAACTAC 59.793 42.308 24.80 8.21 0.00 2.73
571 583 4.892934 TGGGAATTTACTATGGCCATCAAC 59.107 41.667 24.80 6.29 0.00 3.18
575 589 6.043127 GGAAATTGGGAATTTACTATGGCCAT 59.957 38.462 24.45 24.45 40.97 4.40
593 607 7.920682 GCAATAGTGGTACCATTTAGGAAATTG 59.079 37.037 19.72 18.34 41.22 2.32
598 612 5.427157 TGAGCAATAGTGGTACCATTTAGGA 59.573 40.000 19.72 0.00 36.78 2.94
599 613 5.680619 TGAGCAATAGTGGTACCATTTAGG 58.319 41.667 19.72 9.50 38.52 2.69
678 693 5.575606 GCATCACATCATTTGTCAGGAAAAG 59.424 40.000 0.00 0.00 36.00 2.27
878 894 0.461548 GACTCGGCATCTCCATCACA 59.538 55.000 0.00 0.00 34.01 3.58
892 908 3.120060 AGCAATAAAAGCAGCAAGACTCG 60.120 43.478 0.00 0.00 0.00 4.18
952 968 1.456296 TTCATGACAGCCTGCATGTC 58.544 50.000 20.74 11.24 45.88 3.06
996 1012 2.686915 CAGATTTCCTGAACCCATGCTC 59.313 50.000 0.00 0.00 45.78 4.26
1227 1247 3.645660 TTCACCGGCTGCCCATGA 61.646 61.111 14.12 13.98 0.00 3.07
1407 1427 3.674410 CGTATGAACAGCAGCTCTCTTCA 60.674 47.826 8.51 8.51 34.85 3.02
1545 1565 2.218075 CGTGCTCAAGACATCGATGATG 59.782 50.000 31.33 23.48 44.71 3.07
1605 1625 4.783764 ATCGCCATACTCGATGACATAA 57.216 40.909 0.00 0.00 44.00 1.90
1623 1643 2.994578 GTCATCTCCAGCATCATCATCG 59.005 50.000 0.00 0.00 0.00 3.84
1626 1646 4.836736 TCATAGTCATCTCCAGCATCATCA 59.163 41.667 0.00 0.00 0.00 3.07
1641 1661 3.515502 CCCTGTGGAGAACTTCATAGTCA 59.484 47.826 6.22 0.00 31.99 3.41
1935 1955 2.029918 CAGTAAACAGGGGAAGCAAAGC 60.030 50.000 0.00 0.00 0.00 3.51
2057 2080 5.144832 AGTGGTTAAAGTGGCACCTTATTT 58.855 37.500 15.27 10.72 0.00 1.40
2184 2211 5.669477 AGTGAAACATGAGAAGCTAGGATC 58.331 41.667 0.00 0.00 41.43 3.36
2194 2221 4.101585 AGACTGTCCAAGTGAAACATGAGA 59.898 41.667 0.00 0.00 37.85 3.27
2209 2236 1.746220 ACAGCGTATCAGAGACTGTCC 59.254 52.381 3.76 0.00 36.95 4.02
2211 2238 5.584253 AATAACAGCGTATCAGAGACTGT 57.416 39.130 0.00 0.00 43.14 3.55
2222 2249 6.469139 TGATCAAACGAAAATAACAGCGTA 57.531 33.333 0.00 0.00 35.74 4.42
2225 2252 7.328249 TGGATTTGATCAAACGAAAATAACAGC 59.672 33.333 22.71 0.00 32.51 4.40
2227 2254 7.812191 CCTGGATTTGATCAAACGAAAATAACA 59.188 33.333 22.71 10.08 32.51 2.41
2228 2255 7.275560 CCCTGGATTTGATCAAACGAAAATAAC 59.724 37.037 22.71 6.49 32.51 1.89
2231 2258 5.480073 TCCCTGGATTTGATCAAACGAAAAT 59.520 36.000 22.71 6.23 32.51 1.82
2236 2263 3.316308 GGATCCCTGGATTTGATCAAACG 59.684 47.826 22.71 11.31 37.27 3.60
2237 2264 3.638627 GGGATCCCTGGATTTGATCAAAC 59.361 47.826 24.69 15.55 37.27 2.93
2241 2268 3.151912 CTGGGATCCCTGGATTTGATC 57.848 52.381 31.05 0.60 34.60 2.92
2347 2384 4.711355 CAGAGAGAAGAGGAGAAGGAATGT 59.289 45.833 0.00 0.00 0.00 2.71
2419 2460 3.306502 GGAGACCTGTGAACAATAACGGA 60.307 47.826 0.00 0.00 0.00 4.69
2441 2482 8.090214 ACATGAATGAAGAACCTAAAAATGGTG 58.910 33.333 0.00 0.00 37.93 4.17
2493 2534 3.689649 GGAAACCGAGACATACATTTGCT 59.310 43.478 0.00 0.00 0.00 3.91
2494 2535 4.016113 GGAAACCGAGACATACATTTGC 57.984 45.455 0.00 0.00 0.00 3.68
2638 2681 1.875963 CACACAGACCCGGCAATTC 59.124 57.895 0.00 0.00 0.00 2.17
2639 2682 2.268076 GCACACAGACCCGGCAATT 61.268 57.895 0.00 0.00 0.00 2.32
2640 2683 2.672996 GCACACAGACCCGGCAAT 60.673 61.111 0.00 0.00 0.00 3.56
2641 2684 3.872603 AGCACACAGACCCGGCAA 61.873 61.111 0.00 0.00 0.00 4.52
2645 2688 3.349006 GCACAGCACACAGACCCG 61.349 66.667 0.00 0.00 0.00 5.28
2650 2693 1.308047 TACCAAAGCACAGCACACAG 58.692 50.000 0.00 0.00 0.00 3.66
2655 2698 2.857186 TCTGATACCAAAGCACAGCA 57.143 45.000 0.00 0.00 0.00 4.41
2674 2717 2.301346 GCCGATGGACAATGAAGGATT 58.699 47.619 0.00 0.00 0.00 3.01
2675 2718 1.212688 TGCCGATGGACAATGAAGGAT 59.787 47.619 0.00 0.00 0.00 3.24
2701 2744 0.178767 TGAGACGGATGATGGCAAGG 59.821 55.000 0.00 0.00 0.00 3.61
2705 2748 0.179000 AACCTGAGACGGATGATGGC 59.821 55.000 0.00 0.00 0.00 4.40
2711 2754 2.834549 ACATGAAGAACCTGAGACGGAT 59.165 45.455 0.00 0.00 0.00 4.18
2712 2755 2.248248 ACATGAAGAACCTGAGACGGA 58.752 47.619 0.00 0.00 0.00 4.69
2713 2756 2.751166 ACATGAAGAACCTGAGACGG 57.249 50.000 0.00 0.00 0.00 4.79
2714 2757 8.425577 AATATTTACATGAAGAACCTGAGACG 57.574 34.615 0.00 0.00 0.00 4.18
2715 2758 9.383519 TGAATATTTACATGAAGAACCTGAGAC 57.616 33.333 0.00 0.00 0.00 3.36
2716 2759 9.605275 CTGAATATTTACATGAAGAACCTGAGA 57.395 33.333 0.00 0.00 0.00 3.27
2717 2760 8.341173 GCTGAATATTTACATGAAGAACCTGAG 58.659 37.037 0.00 0.00 0.00 3.35
2742 2785 0.466189 TGCTATAAGGCAGCCCAAGC 60.466 55.000 8.22 12.56 38.29 4.01
2750 2793 0.104855 CTCGGCACTGCTATAAGGCA 59.895 55.000 0.00 0.00 40.15 4.75
2751 2794 0.105039 ACTCGGCACTGCTATAAGGC 59.895 55.000 0.00 0.00 0.00 4.35
2814 2857 0.814010 AATTATCGCGCGGCCTTCTT 60.814 50.000 31.69 13.19 0.00 2.52
2816 2859 1.082756 CAATTATCGCGCGGCCTTC 60.083 57.895 31.69 0.00 0.00 3.46
2817 2860 1.373590 AACAATTATCGCGCGGCCTT 61.374 50.000 31.69 15.37 0.00 4.35
2818 2861 0.531090 TAACAATTATCGCGCGGCCT 60.531 50.000 31.69 17.31 0.00 5.19
2819 2862 0.515564 ATAACAATTATCGCGCGGCC 59.484 50.000 31.69 0.00 0.00 6.13
2820 2863 1.193650 TCATAACAATTATCGCGCGGC 59.806 47.619 31.69 0.00 0.00 6.53
2821 2864 3.513462 TTCATAACAATTATCGCGCGG 57.487 42.857 31.69 15.29 0.00 6.46
2849 2929 6.152661 AGAGAAAAACGCAATATCCAATGGAA 59.847 34.615 5.89 0.00 34.34 3.53
2854 2934 5.471797 TCACAGAGAAAAACGCAATATCCAA 59.528 36.000 0.00 0.00 0.00 3.53
2855 2935 5.000591 TCACAGAGAAAAACGCAATATCCA 58.999 37.500 0.00 0.00 0.00 3.41
2856 2936 5.545658 TCACAGAGAAAAACGCAATATCC 57.454 39.130 0.00 0.00 0.00 2.59
2868 2948 6.095440 CAGAAACCTTCCTTTTCACAGAGAAA 59.905 38.462 0.00 0.00 44.21 2.52
2869 2949 5.590259 CAGAAACCTTCCTTTTCACAGAGAA 59.410 40.000 0.00 0.00 35.72 2.87
2870 2950 5.126067 CAGAAACCTTCCTTTTCACAGAGA 58.874 41.667 0.00 0.00 35.72 3.10
2871 2951 4.884164 ACAGAAACCTTCCTTTTCACAGAG 59.116 41.667 0.00 0.00 35.72 3.35
2891 2971 1.091537 ACACAACCAAACGTCCACAG 58.908 50.000 0.00 0.00 0.00 3.66
2897 2977 0.170116 CACAGCACACAACCAAACGT 59.830 50.000 0.00 0.00 0.00 3.99
2898 2978 1.139226 GCACAGCACACAACCAAACG 61.139 55.000 0.00 0.00 0.00 3.60
2995 3075 2.439883 ACGGAGGGAGTAGACGGC 60.440 66.667 0.00 0.00 0.00 5.68
2996 3076 1.823041 GGACGGAGGGAGTAGACGG 60.823 68.421 0.00 0.00 0.00 4.79
2997 3077 1.823041 GGGACGGAGGGAGTAGACG 60.823 68.421 0.00 0.00 0.00 4.18
2998 3078 0.106116 ATGGGACGGAGGGAGTAGAC 60.106 60.000 0.00 0.00 0.00 2.59
2999 3079 1.526315 TATGGGACGGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
3000 3080 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3001 3081 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3002 3082 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3003 3083 1.070758 CACATTATGGGACGGAGGGAG 59.929 57.143 0.00 0.00 0.00 4.30
3004 3084 1.128200 CACATTATGGGACGGAGGGA 58.872 55.000 0.00 0.00 0.00 4.20
3005 3085 0.837272 ACACATTATGGGACGGAGGG 59.163 55.000 0.00 0.00 0.00 4.30
3006 3086 1.484653 TGACACATTATGGGACGGAGG 59.515 52.381 0.00 0.00 0.00 4.30
3007 3087 2.979814 TGACACATTATGGGACGGAG 57.020 50.000 0.00 0.00 0.00 4.63
3008 3088 3.704800 TTTGACACATTATGGGACGGA 57.295 42.857 0.00 0.00 0.00 4.69
3009 3089 4.775058 TTTTTGACACATTATGGGACGG 57.225 40.909 0.00 0.00 0.00 4.79
3028 3108 6.205853 TCTGTGCCATAATGTAAGACGTTTTT 59.794 34.615 0.00 0.00 0.00 1.94
3029 3109 5.703592 TCTGTGCCATAATGTAAGACGTTTT 59.296 36.000 0.00 0.00 0.00 2.43
3030 3110 5.242434 TCTGTGCCATAATGTAAGACGTTT 58.758 37.500 0.00 0.00 0.00 3.60
3031 3111 4.827692 TCTGTGCCATAATGTAAGACGTT 58.172 39.130 0.00 0.00 0.00 3.99
3032 3112 4.433615 CTCTGTGCCATAATGTAAGACGT 58.566 43.478 0.00 0.00 0.00 4.34
3033 3113 3.804325 CCTCTGTGCCATAATGTAAGACG 59.196 47.826 0.00 0.00 0.00 4.18
3034 3114 4.130118 CCCTCTGTGCCATAATGTAAGAC 58.870 47.826 0.00 0.00 0.00 3.01
3035 3115 4.037222 TCCCTCTGTGCCATAATGTAAGA 58.963 43.478 0.00 0.00 0.00 2.10
3036 3116 4.141620 ACTCCCTCTGTGCCATAATGTAAG 60.142 45.833 0.00 0.00 0.00 2.34
3037 3117 3.780294 ACTCCCTCTGTGCCATAATGTAA 59.220 43.478 0.00 0.00 0.00 2.41
3038 3118 3.384168 ACTCCCTCTGTGCCATAATGTA 58.616 45.455 0.00 0.00 0.00 2.29
3039 3119 2.200081 ACTCCCTCTGTGCCATAATGT 58.800 47.619 0.00 0.00 0.00 2.71
3040 3120 4.040829 TCATACTCCCTCTGTGCCATAATG 59.959 45.833 0.00 0.00 0.00 1.90
3041 3121 4.234550 TCATACTCCCTCTGTGCCATAAT 58.765 43.478 0.00 0.00 0.00 1.28
3042 3122 3.643320 CTCATACTCCCTCTGTGCCATAA 59.357 47.826 0.00 0.00 0.00 1.90
3043 3123 3.234353 CTCATACTCCCTCTGTGCCATA 58.766 50.000 0.00 0.00 0.00 2.74
3044 3124 2.045524 CTCATACTCCCTCTGTGCCAT 58.954 52.381 0.00 0.00 0.00 4.40
3045 3125 1.489481 CTCATACTCCCTCTGTGCCA 58.511 55.000 0.00 0.00 0.00 4.92
3046 3126 0.105778 GCTCATACTCCCTCTGTGCC 59.894 60.000 0.00 0.00 0.00 5.01
3047 3127 0.826715 TGCTCATACTCCCTCTGTGC 59.173 55.000 0.00 0.00 0.00 4.57
3048 3128 4.944619 TTATGCTCATACTCCCTCTGTG 57.055 45.455 0.00 0.00 0.00 3.66
3049 3129 5.221803 CCAATTATGCTCATACTCCCTCTGT 60.222 44.000 0.00 0.00 0.00 3.41
3050 3130 5.221803 ACCAATTATGCTCATACTCCCTCTG 60.222 44.000 0.00 0.00 0.00 3.35
3051 3131 4.910304 ACCAATTATGCTCATACTCCCTCT 59.090 41.667 0.00 0.00 0.00 3.69
3052 3132 5.234466 ACCAATTATGCTCATACTCCCTC 57.766 43.478 0.00 0.00 0.00 4.30
3053 3133 5.653255 AACCAATTATGCTCATACTCCCT 57.347 39.130 0.00 0.00 0.00 4.20
3054 3134 5.507985 GCAAACCAATTATGCTCATACTCCC 60.508 44.000 0.00 0.00 37.12 4.30
3055 3135 5.300286 AGCAAACCAATTATGCTCATACTCC 59.700 40.000 0.00 0.00 46.98 3.85
3056 3136 6.204359 CAGCAAACCAATTATGCTCATACTC 58.796 40.000 0.00 0.00 46.98 2.59
3057 3137 5.450965 GCAGCAAACCAATTATGCTCATACT 60.451 40.000 0.00 0.00 46.98 2.12
3058 3138 4.741676 GCAGCAAACCAATTATGCTCATAC 59.258 41.667 0.00 0.00 46.98 2.39
3059 3139 4.202141 GGCAGCAAACCAATTATGCTCATA 60.202 41.667 0.00 0.00 46.98 2.15
3060 3140 3.431207 GGCAGCAAACCAATTATGCTCAT 60.431 43.478 0.00 0.00 46.98 2.90
3061 3141 2.094078 GGCAGCAAACCAATTATGCTCA 60.094 45.455 0.00 0.00 46.98 4.26
3062 3142 2.094078 TGGCAGCAAACCAATTATGCTC 60.094 45.455 0.00 0.00 46.98 4.26
3064 3144 2.383368 TGGCAGCAAACCAATTATGC 57.617 45.000 0.00 0.00 40.34 3.14
3065 3145 5.686159 TTTTTGGCAGCAAACCAATTATG 57.314 34.783 6.01 0.00 46.25 1.90
3066 3146 6.294620 CCAATTTTTGGCAGCAAACCAATTAT 60.295 34.615 6.01 1.48 46.25 1.28
3067 3147 5.009410 CCAATTTTTGGCAGCAAACCAATTA 59.991 36.000 6.01 0.00 46.25 1.40
3068 3148 4.202131 CCAATTTTTGGCAGCAAACCAATT 60.202 37.500 6.01 0.00 46.25 2.32
3069 3149 3.318557 CCAATTTTTGGCAGCAAACCAAT 59.681 39.130 6.01 0.00 46.25 3.16
3070 3150 2.686915 CCAATTTTTGGCAGCAAACCAA 59.313 40.909 0.00 1.35 45.17 3.67
3071 3151 2.295885 CCAATTTTTGGCAGCAAACCA 58.704 42.857 0.00 0.00 45.17 3.67
3109 3189 8.428410 CCAAGTAGTTGCAAATATTTGGCACAA 61.428 37.037 33.63 18.70 36.33 3.33
3110 3190 5.720371 AGTAGTTGCAAATATTTGGCACA 57.280 34.783 25.61 14.56 38.57 4.57
3111 3191 5.348451 CCAAGTAGTTGCAAATATTTGGCAC 59.652 40.000 33.63 14.76 38.57 5.01
3112 3192 5.011533 ACCAAGTAGTTGCAAATATTTGGCA 59.988 36.000 38.93 20.57 40.54 4.92
3113 3193 5.478407 ACCAAGTAGTTGCAAATATTTGGC 58.522 37.500 38.93 18.12 40.54 4.52
3114 3194 7.116233 GTCAACCAAGTAGTTGCAAATATTTGG 59.884 37.037 38.08 38.08 45.47 3.28
3115 3195 7.867403 AGTCAACCAAGTAGTTGCAAATATTTG 59.133 33.333 26.00 26.00 45.47 2.32
3116 3196 7.951591 AGTCAACCAAGTAGTTGCAAATATTT 58.048 30.769 10.15 9.31 45.47 1.40
3117 3197 7.524717 AGTCAACCAAGTAGTTGCAAATATT 57.475 32.000 10.15 2.69 45.47 1.28
3118 3198 7.148474 CGTAGTCAACCAAGTAGTTGCAAATAT 60.148 37.037 10.15 0.00 45.47 1.28
3119 3199 6.146510 CGTAGTCAACCAAGTAGTTGCAAATA 59.853 38.462 0.00 0.00 45.47 1.40
3120 3200 5.049680 CGTAGTCAACCAAGTAGTTGCAAAT 60.050 40.000 4.23 4.23 45.47 2.32
3121 3201 4.271533 CGTAGTCAACCAAGTAGTTGCAAA 59.728 41.667 0.00 0.00 45.47 3.68
3122 3202 3.805422 CGTAGTCAACCAAGTAGTTGCAA 59.195 43.478 4.65 0.00 45.47 4.08
3123 3203 3.068448 TCGTAGTCAACCAAGTAGTTGCA 59.932 43.478 4.65 0.00 45.47 4.08
3124 3204 3.645884 TCGTAGTCAACCAAGTAGTTGC 58.354 45.455 4.65 0.00 45.47 4.17
3125 3205 4.868067 ACTCGTAGTCAACCAAGTAGTTG 58.132 43.478 3.09 3.09 46.90 3.16
3126 3206 5.163478 ACAACTCGTAGTCAACCAAGTAGTT 60.163 40.000 0.00 0.00 0.00 2.24
3127 3207 4.340381 ACAACTCGTAGTCAACCAAGTAGT 59.660 41.667 0.00 0.00 0.00 2.73
3128 3208 4.868067 ACAACTCGTAGTCAACCAAGTAG 58.132 43.478 0.00 0.00 0.00 2.57
3129 3209 4.924305 ACAACTCGTAGTCAACCAAGTA 57.076 40.909 0.00 0.00 0.00 2.24
3130 3210 3.814005 ACAACTCGTAGTCAACCAAGT 57.186 42.857 0.00 0.00 0.00 3.16
3131 3211 5.263185 CAAAACAACTCGTAGTCAACCAAG 58.737 41.667 0.00 0.00 0.00 3.61
3132 3212 4.437659 GCAAAACAACTCGTAGTCAACCAA 60.438 41.667 0.00 0.00 0.00 3.67
3133 3213 3.064271 GCAAAACAACTCGTAGTCAACCA 59.936 43.478 0.00 0.00 0.00 3.67
3134 3214 3.547413 GGCAAAACAACTCGTAGTCAACC 60.547 47.826 0.00 0.00 0.00 3.77
3135 3215 3.311596 AGGCAAAACAACTCGTAGTCAAC 59.688 43.478 0.00 0.00 0.00 3.18
3136 3216 3.537580 AGGCAAAACAACTCGTAGTCAA 58.462 40.909 0.00 0.00 0.00 3.18
3137 3217 3.188159 AGGCAAAACAACTCGTAGTCA 57.812 42.857 0.00 0.00 0.00 3.41
3138 3218 5.169295 AGATAGGCAAAACAACTCGTAGTC 58.831 41.667 0.00 0.00 0.00 2.59
3139 3219 5.148651 AGATAGGCAAAACAACTCGTAGT 57.851 39.130 0.00 0.00 0.00 2.73
3140 3220 5.062308 GTGAGATAGGCAAAACAACTCGTAG 59.938 44.000 0.00 0.00 0.00 3.51
3141 3221 4.927425 GTGAGATAGGCAAAACAACTCGTA 59.073 41.667 0.00 0.00 0.00 3.43
3142 3222 3.746492 GTGAGATAGGCAAAACAACTCGT 59.254 43.478 0.00 0.00 0.00 4.18
3143 3223 3.745975 TGTGAGATAGGCAAAACAACTCG 59.254 43.478 0.00 0.00 0.00 4.18
3144 3224 5.886960 ATGTGAGATAGGCAAAACAACTC 57.113 39.130 0.00 0.00 0.00 3.01
3145 3225 7.448469 ACTTTATGTGAGATAGGCAAAACAACT 59.552 33.333 0.00 0.00 0.00 3.16
3146 3226 7.593825 ACTTTATGTGAGATAGGCAAAACAAC 58.406 34.615 0.00 0.00 0.00 3.32
3147 3227 7.759489 ACTTTATGTGAGATAGGCAAAACAA 57.241 32.000 0.00 0.00 0.00 2.83
3148 3228 7.592938 CAACTTTATGTGAGATAGGCAAAACA 58.407 34.615 0.00 0.00 0.00 2.83
3149 3229 6.528072 GCAACTTTATGTGAGATAGGCAAAAC 59.472 38.462 0.00 0.00 0.00 2.43
3150 3230 6.350110 GGCAACTTTATGTGAGATAGGCAAAA 60.350 38.462 0.00 0.00 0.00 2.44
3151 3231 5.125417 GGCAACTTTATGTGAGATAGGCAAA 59.875 40.000 0.00 0.00 0.00 3.68
3152 3232 4.640201 GGCAACTTTATGTGAGATAGGCAA 59.360 41.667 0.00 0.00 0.00 4.52
3153 3233 4.199310 GGCAACTTTATGTGAGATAGGCA 58.801 43.478 0.00 0.00 0.00 4.75
3154 3234 4.199310 TGGCAACTTTATGTGAGATAGGC 58.801 43.478 0.00 0.00 37.61 3.93
3155 3235 6.949352 ATTGGCAACTTTATGTGAGATAGG 57.051 37.500 0.00 0.00 37.61 2.57
3156 3236 8.668510 ACTATTGGCAACTTTATGTGAGATAG 57.331 34.615 0.00 0.00 37.61 2.08
3157 3237 8.892723 CAACTATTGGCAACTTTATGTGAGATA 58.107 33.333 0.00 0.00 37.61 1.98
3158 3238 7.148018 CCAACTATTGGCAACTTTATGTGAGAT 60.148 37.037 0.00 0.00 45.17 2.75
3159 3239 6.150976 CCAACTATTGGCAACTTTATGTGAGA 59.849 38.462 0.00 0.00 45.17 3.27
3160 3240 6.324819 CCAACTATTGGCAACTTTATGTGAG 58.675 40.000 0.00 0.00 45.17 3.51
3161 3241 6.266168 CCAACTATTGGCAACTTTATGTGA 57.734 37.500 0.00 0.00 45.17 3.58
3175 3255 7.336931 AGCAATACCAAGACTTACCAACTATTG 59.663 37.037 0.00 0.00 0.00 1.90
3176 3256 7.402862 AGCAATACCAAGACTTACCAACTATT 58.597 34.615 0.00 0.00 0.00 1.73
3177 3257 6.958767 AGCAATACCAAGACTTACCAACTAT 58.041 36.000 0.00 0.00 0.00 2.12
3178 3258 6.368779 AGCAATACCAAGACTTACCAACTA 57.631 37.500 0.00 0.00 0.00 2.24
3179 3259 5.242795 AGCAATACCAAGACTTACCAACT 57.757 39.130 0.00 0.00 0.00 3.16
3180 3260 7.625828 ATTAGCAATACCAAGACTTACCAAC 57.374 36.000 0.00 0.00 0.00 3.77
3181 3261 8.644374 AAATTAGCAATACCAAGACTTACCAA 57.356 30.769 0.00 0.00 0.00 3.67
3182 3262 8.644374 AAAATTAGCAATACCAAGACTTACCA 57.356 30.769 0.00 0.00 0.00 3.25
3186 3266 8.802267 TGCTAAAAATTAGCAATACCAAGACTT 58.198 29.630 19.38 0.00 46.29 3.01
3187 3267 8.348285 TGCTAAAAATTAGCAATACCAAGACT 57.652 30.769 19.38 0.00 46.29 3.24
3199 3279 6.667007 ATGTTGGCATTGCTAAAAATTAGC 57.333 33.333 9.16 13.74 40.76 3.09
3200 3280 7.964011 CCAAATGTTGGCATTGCTAAAAATTAG 59.036 33.333 9.16 5.02 45.17 1.73
3201 3281 7.814642 CCAAATGTTGGCATTGCTAAAAATTA 58.185 30.769 9.16 0.00 45.17 1.40
3202 3282 6.679843 CCAAATGTTGGCATTGCTAAAAATT 58.320 32.000 9.16 9.47 45.17 1.82
3203 3283 6.256912 CCAAATGTTGGCATTGCTAAAAAT 57.743 33.333 9.16 3.97 45.17 1.82
3204 3284 5.686159 CCAAATGTTGGCATTGCTAAAAA 57.314 34.783 9.16 1.67 45.17 1.94
3217 3297 5.883503 AATATTTGGCTTGCCAAATGTTG 57.116 34.783 40.40 0.00 46.02 3.33
3218 3298 4.701171 CCAATATTTGGCTTGCCAAATGTT 59.299 37.500 40.40 37.64 45.43 2.71
3219 3299 4.263435 CCAATATTTGGCTTGCCAAATGT 58.737 39.130 40.40 35.55 46.02 2.71
3220 3300 4.886247 CCAATATTTGGCTTGCCAAATG 57.114 40.909 40.40 31.51 46.02 2.32
3240 3320 6.884280 ATAGAGCATAATTGGTTTGCTACC 57.116 37.500 6.90 2.04 46.21 3.18
3241 3321 7.384115 TCGTATAGAGCATAATTGGTTTGCTAC 59.616 37.037 6.90 2.80 46.21 3.58
3242 3322 7.384115 GTCGTATAGAGCATAATTGGTTTGCTA 59.616 37.037 6.90 0.00 46.21 3.49
3244 3324 6.202954 AGTCGTATAGAGCATAATTGGTTTGC 59.797 38.462 0.00 0.00 32.62 3.68
3245 3325 7.567571 CAGTCGTATAGAGCATAATTGGTTTG 58.432 38.462 0.00 0.00 32.62 2.93
3246 3326 6.202954 GCAGTCGTATAGAGCATAATTGGTTT 59.797 38.462 0.00 0.00 32.62 3.27
3247 3327 5.696724 GCAGTCGTATAGAGCATAATTGGTT 59.303 40.000 0.00 0.00 32.62 3.67
3248 3328 5.230942 GCAGTCGTATAGAGCATAATTGGT 58.769 41.667 0.00 0.00 35.95 3.67
3249 3329 4.324669 CGCAGTCGTATAGAGCATAATTGG 59.675 45.833 0.00 0.00 0.00 3.16
3250 3330 5.154222 TCGCAGTCGTATAGAGCATAATTG 58.846 41.667 0.00 0.00 36.96 2.32
3251 3331 5.372547 TCGCAGTCGTATAGAGCATAATT 57.627 39.130 0.00 0.00 36.96 1.40
3252 3332 5.568685 ATCGCAGTCGTATAGAGCATAAT 57.431 39.130 0.00 0.00 36.96 1.28
3253 3333 5.372547 AATCGCAGTCGTATAGAGCATAA 57.627 39.130 0.00 0.00 36.96 1.90
3254 3334 5.154222 CAAATCGCAGTCGTATAGAGCATA 58.846 41.667 0.00 0.00 36.96 3.14
3255 3335 3.924918 AATCGCAGTCGTATAGAGCAT 57.075 42.857 0.00 0.00 36.96 3.79
3256 3336 3.372060 CAAATCGCAGTCGTATAGAGCA 58.628 45.455 0.00 0.00 36.96 4.26
3257 3337 2.154007 GCAAATCGCAGTCGTATAGAGC 59.846 50.000 0.00 0.00 41.79 4.09
3258 3338 2.402049 CGCAAATCGCAGTCGTATAGAG 59.598 50.000 0.00 0.00 42.60 2.43
3259 3339 2.223409 ACGCAAATCGCAGTCGTATAGA 60.223 45.455 0.00 0.00 42.60 1.98
3260 3340 2.097877 CACGCAAATCGCAGTCGTATAG 60.098 50.000 0.00 0.00 42.60 1.31
3261 3341 1.849829 CACGCAAATCGCAGTCGTATA 59.150 47.619 0.00 0.00 42.60 1.47
3262 3342 0.645355 CACGCAAATCGCAGTCGTAT 59.355 50.000 0.00 0.00 42.60 3.06
3263 3343 1.951181 GCACGCAAATCGCAGTCGTA 61.951 55.000 0.00 0.00 42.60 3.43
3264 3344 2.853210 CACGCAAATCGCAGTCGT 59.147 55.556 0.00 0.00 42.60 4.34
3265 3345 2.571611 GCACGCAAATCGCAGTCG 60.572 61.111 0.00 0.00 42.60 4.18
3266 3346 2.571611 CGCACGCAAATCGCAGTC 60.572 61.111 0.00 0.00 42.60 3.51
3267 3347 4.088762 CCGCACGCAAATCGCAGT 62.089 61.111 0.00 0.00 42.60 4.40
3268 3348 4.817063 CCCGCACGCAAATCGCAG 62.817 66.667 0.00 0.00 42.60 5.18
3270 3350 4.520846 CTCCCGCACGCAAATCGC 62.521 66.667 0.00 0.00 43.23 4.58
3271 3351 4.520846 GCTCCCGCACGCAAATCG 62.521 66.667 0.00 0.00 45.38 3.34
3272 3352 4.520846 CGCTCCCGCACGCAAATC 62.521 66.667 0.00 0.00 35.30 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.