Multiple sequence alignment - TraesCS6D01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G111400 chr6D 100.000 5949 0 0 1 5949 78019395 78025343 0.000000e+00 10986
1 TraesCS6D01G111400 chr6B 91.719 2729 149 34 2733 5437 150772774 150775449 0.000000e+00 3716
2 TraesCS6D01G111400 chr6B 89.752 966 82 9 1777 2735 506729303 506730258 0.000000e+00 1219
3 TraesCS6D01G111400 chr6B 87.384 967 105 8 1777 2735 279099097 279100054 0.000000e+00 1094
4 TraesCS6D01G111400 chr6B 88.070 855 57 15 784 1623 150771557 150772381 0.000000e+00 972
5 TraesCS6D01G111400 chr6B 76.139 746 156 17 1 733 455455562 455456298 7.280000e-99 372
6 TraesCS6D01G111400 chr6B 83.051 236 25 10 1537 1772 150772558 150772778 3.640000e-47 200
7 TraesCS6D01G111400 chr6B 89.157 166 7 4 5438 5597 150775499 150775659 4.700000e-46 196
8 TraesCS6D01G111400 chr6B 93.162 117 8 0 5613 5729 150776000 150776116 7.930000e-39 172
9 TraesCS6D01G111400 chr6A 90.699 2602 144 47 2745 5297 93765142 93767694 0.000000e+00 3374
10 TraesCS6D01G111400 chr6A 88.287 905 74 19 736 1616 93763839 93764735 0.000000e+00 1055
11 TraesCS6D01G111400 chr6A 84.322 236 22 10 1537 1772 93764914 93765134 3.610000e-52 217
12 TraesCS6D01G111400 chr6A 88.701 177 17 1 5755 5931 93768463 93768636 4.670000e-51 213
13 TraesCS6D01G111400 chr5D 91.192 965 81 2 1772 2735 551841555 551840594 0.000000e+00 1308
14 TraesCS6D01G111400 chr5D 81.530 379 65 2 205 579 187962842 187962465 2.080000e-79 307
15 TraesCS6D01G111400 chr5D 87.895 190 23 0 1 190 187964233 187964044 2.160000e-54 224
16 TraesCS6D01G111400 chr2D 90.103 970 80 10 1772 2735 156559388 156560347 0.000000e+00 1245
17 TraesCS6D01G111400 chr2D 84.815 731 96 7 12 734 555159679 555160402 0.000000e+00 721
18 TraesCS6D01G111400 chr5B 87.894 983 92 21 1772 2735 160136760 160137734 0.000000e+00 1131
19 TraesCS6D01G111400 chr3A 87.967 964 105 7 1775 2734 469050581 469051537 0.000000e+00 1127
20 TraesCS6D01G111400 chr3A 83.784 740 108 7 1 733 227298275 227299009 0.000000e+00 691
21 TraesCS6D01G111400 chr1D 87.436 979 103 15 1772 2735 128521023 128520050 0.000000e+00 1109
22 TraesCS6D01G111400 chr2A 87.206 977 105 17 1772 2735 306172999 306172030 0.000000e+00 1094
23 TraesCS6D01G111400 chr2A 92.683 738 46 4 1 733 39472723 39471989 0.000000e+00 1057
24 TraesCS6D01G111400 chr4B 86.988 976 112 10 1772 2735 217842230 217843202 0.000000e+00 1085
25 TraesCS6D01G111400 chr3D 83.979 749 107 10 1 741 504354763 504355506 0.000000e+00 706
26 TraesCS6D01G111400 chr3D 81.447 760 109 13 1 733 35693443 35694197 1.430000e-165 593
27 TraesCS6D01G111400 chr1A 85.133 639 88 4 1 635 146628926 146628291 0.000000e+00 647
28 TraesCS6D01G111400 chr4A 81.732 739 126 4 1 733 468238217 468237482 5.100000e-170 608
29 TraesCS6D01G111400 chr7D 86.179 123 16 1 1 123 56464253 56464374 1.350000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G111400 chr6D 78019395 78025343 5948 False 10986.00 10986 100.00000 1 5949 1 chr6D.!!$F1 5948
1 TraesCS6D01G111400 chr6B 506729303 506730258 955 False 1219.00 1219 89.75200 1777 2735 1 chr6B.!!$F3 958
2 TraesCS6D01G111400 chr6B 279099097 279100054 957 False 1094.00 1094 87.38400 1777 2735 1 chr6B.!!$F1 958
3 TraesCS6D01G111400 chr6B 150771557 150776116 4559 False 1051.20 3716 89.03180 784 5729 5 chr6B.!!$F4 4945
4 TraesCS6D01G111400 chr6B 455455562 455456298 736 False 372.00 372 76.13900 1 733 1 chr6B.!!$F2 732
5 TraesCS6D01G111400 chr6A 93763839 93768636 4797 False 1214.75 3374 88.00225 736 5931 4 chr6A.!!$F1 5195
6 TraesCS6D01G111400 chr5D 551840594 551841555 961 True 1308.00 1308 91.19200 1772 2735 1 chr5D.!!$R1 963
7 TraesCS6D01G111400 chr5D 187962465 187964233 1768 True 265.50 307 84.71250 1 579 2 chr5D.!!$R2 578
8 TraesCS6D01G111400 chr2D 156559388 156560347 959 False 1245.00 1245 90.10300 1772 2735 1 chr2D.!!$F1 963
9 TraesCS6D01G111400 chr2D 555159679 555160402 723 False 721.00 721 84.81500 12 734 1 chr2D.!!$F2 722
10 TraesCS6D01G111400 chr5B 160136760 160137734 974 False 1131.00 1131 87.89400 1772 2735 1 chr5B.!!$F1 963
11 TraesCS6D01G111400 chr3A 469050581 469051537 956 False 1127.00 1127 87.96700 1775 2734 1 chr3A.!!$F2 959
12 TraesCS6D01G111400 chr3A 227298275 227299009 734 False 691.00 691 83.78400 1 733 1 chr3A.!!$F1 732
13 TraesCS6D01G111400 chr1D 128520050 128521023 973 True 1109.00 1109 87.43600 1772 2735 1 chr1D.!!$R1 963
14 TraesCS6D01G111400 chr2A 306172030 306172999 969 True 1094.00 1094 87.20600 1772 2735 1 chr2A.!!$R2 963
15 TraesCS6D01G111400 chr2A 39471989 39472723 734 True 1057.00 1057 92.68300 1 733 1 chr2A.!!$R1 732
16 TraesCS6D01G111400 chr4B 217842230 217843202 972 False 1085.00 1085 86.98800 1772 2735 1 chr4B.!!$F1 963
17 TraesCS6D01G111400 chr3D 504354763 504355506 743 False 706.00 706 83.97900 1 741 1 chr3D.!!$F2 740
18 TraesCS6D01G111400 chr3D 35693443 35694197 754 False 593.00 593 81.44700 1 733 1 chr3D.!!$F1 732
19 TraesCS6D01G111400 chr1A 146628291 146628926 635 True 647.00 647 85.13300 1 635 1 chr1A.!!$R1 634
20 TraesCS6D01G111400 chr4A 468237482 468238217 735 True 608.00 608 81.73200 1 733 1 chr4A.!!$R1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 1644 0.179169 GAGACGGACTCGCAACTACC 60.179 60.0 0.00 0.0 40.63 3.18 F
997 2219 0.386858 GCGTCAGCTGTAACAGTCGA 60.387 55.0 14.67 0.0 41.01 4.20 F
2221 3759 0.732880 CCTAACAGTCCACAGCGTCG 60.733 60.0 0.00 0.0 0.00 5.12 F
2745 4285 0.240145 CGCGAGTTGGTCAGTCTACA 59.760 55.0 0.00 0.0 0.00 2.74 F
4279 5842 0.039074 AGCCGTCTGAACTTCGTCTG 60.039 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 3809 1.153823 CGCCGAACTCCAGACGATT 60.154 57.895 0.00 0.0 0.00 3.34 R
2525 4065 0.692476 CACTCACCACCATCTGGGAA 59.308 55.000 0.54 0.0 45.78 3.97 R
3042 4603 1.003580 TCTCAATTCAGCCCAGGTGAC 59.996 52.381 0.00 0.0 39.84 3.67 R
4339 5903 0.307760 CACGTGGAAACAAGCACCTC 59.692 55.000 7.95 0.0 46.06 3.85 R
5386 6988 0.297820 CGCCAACGTAGATCGAAAGC 59.702 55.000 0.00 0.0 42.86 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 5.144100 TGTGGTGGTCAAATAGGAACAAAT 58.856 37.500 0.00 0.00 36.00 2.32
203 1391 1.832167 GCTGACAAGGCAACCCCAA 60.832 57.895 0.00 0.00 35.39 4.12
371 1559 1.962144 AGCGATGCTTTTGCTGCTT 59.038 47.368 0.00 0.00 43.84 3.91
396 1584 0.594284 GTAGCTATGTCCCACGCGAC 60.594 60.000 15.93 0.00 0.00 5.19
456 1644 0.179169 GAGACGGACTCGCAACTACC 60.179 60.000 0.00 0.00 40.63 3.18
523 1719 5.595885 CTGTGATCGAGGACATGAAATACT 58.404 41.667 0.00 0.00 0.00 2.12
638 1854 1.003118 TGAACCTGACCACTGTATGCC 59.997 52.381 0.00 0.00 0.00 4.40
691 1908 3.885297 CGAATGTATTTTGGGGATCTGCT 59.115 43.478 0.00 0.00 0.00 4.24
698 1915 4.148825 GGGGATCTGCTCGCACGT 62.149 66.667 0.00 0.00 38.54 4.49
699 1916 2.125512 GGGATCTGCTCGCACGTT 60.126 61.111 0.00 0.00 36.83 3.99
700 1917 1.741770 GGGATCTGCTCGCACGTTT 60.742 57.895 0.00 0.00 36.83 3.60
795 2014 1.204704 GGATGGATCGCATGATACGGA 59.795 52.381 0.00 0.00 38.38 4.69
812 2032 1.701704 GGATTCGTTGGCAAAGCAAG 58.298 50.000 8.36 0.00 0.00 4.01
830 2050 0.804989 AGGCGCAATTCCTTTCTTCG 59.195 50.000 10.83 0.00 0.00 3.79
861 2081 2.368878 GGGAAGAGGGGCCCATCT 60.369 66.667 33.25 33.25 44.07 2.90
862 2082 2.009302 GGGAAGAGGGGCCCATCTT 61.009 63.158 43.85 43.85 44.07 2.40
900 2120 1.072332 CATCACACCCGTCCAACCA 59.928 57.895 0.00 0.00 0.00 3.67
902 2122 2.124507 ATCACACCCGTCCAACCAGG 62.125 60.000 0.00 0.00 39.47 4.45
996 2218 1.344942 GGCGTCAGCTGTAACAGTCG 61.345 60.000 14.67 9.24 44.37 4.18
997 2219 0.386858 GCGTCAGCTGTAACAGTCGA 60.387 55.000 14.67 0.00 41.01 4.20
998 2220 1.328439 CGTCAGCTGTAACAGTCGAC 58.672 55.000 14.67 7.70 34.14 4.20
999 2221 1.334689 CGTCAGCTGTAACAGTCGACA 60.335 52.381 19.50 0.00 35.82 4.35
1022 2244 3.655810 GAGCAGCGGTGGAGTCAGG 62.656 68.421 17.54 0.00 0.00 3.86
1111 2334 2.605295 CCGAGGGTGGTGGTGGTA 60.605 66.667 0.00 0.00 0.00 3.25
1189 2414 2.408022 CTCCTCGACCCGTAAGCG 59.592 66.667 0.00 0.00 37.95 4.68
1194 2419 2.101770 CGACCCGTAAGCGTCTCC 59.898 66.667 0.00 0.00 42.86 3.71
1252 2477 3.119849 GCGTGTTTGATGAAATGCCTACT 60.120 43.478 0.00 0.00 0.00 2.57
1400 2633 3.518992 TTTGGGCTTGGTTTAGTAGCT 57.481 42.857 0.00 0.00 35.30 3.32
1403 2636 2.107552 TGGGCTTGGTTTAGTAGCTTGT 59.892 45.455 0.00 0.00 35.30 3.16
1488 2721 3.953712 TGGCGATGTTCTTACTTCTGA 57.046 42.857 0.00 0.00 0.00 3.27
1491 2724 5.245531 TGGCGATGTTCTTACTTCTGATTT 58.754 37.500 0.00 0.00 0.00 2.17
1512 2745 5.534207 TTTTTGTTCAGGATTGCACATCT 57.466 34.783 0.00 0.00 30.63 2.90
1513 2746 5.534207 TTTTGTTCAGGATTGCACATCTT 57.466 34.783 0.00 0.00 30.63 2.40
1515 2748 4.771590 TGTTCAGGATTGCACATCTTTC 57.228 40.909 0.00 0.00 0.00 2.62
1516 2749 4.401022 TGTTCAGGATTGCACATCTTTCT 58.599 39.130 0.00 0.00 0.00 2.52
1519 2752 3.087031 CAGGATTGCACATCTTTCTGGT 58.913 45.455 0.00 0.00 0.00 4.00
1521 2754 3.508793 AGGATTGCACATCTTTCTGGTTG 59.491 43.478 0.00 0.00 0.00 3.77
1522 2755 2.798976 TTGCACATCTTTCTGGTTGC 57.201 45.000 0.00 0.00 0.00 4.17
1523 2756 1.985473 TGCACATCTTTCTGGTTGCT 58.015 45.000 0.00 0.00 0.00 3.91
1524 2757 1.610038 TGCACATCTTTCTGGTTGCTG 59.390 47.619 0.00 0.00 0.00 4.41
1525 2758 1.881973 GCACATCTTTCTGGTTGCTGA 59.118 47.619 0.00 0.00 0.00 4.26
1526 2759 2.095364 GCACATCTTTCTGGTTGCTGAG 60.095 50.000 0.00 0.00 0.00 3.35
1527 2760 3.405831 CACATCTTTCTGGTTGCTGAGA 58.594 45.455 0.00 0.00 0.00 3.27
1528 2761 3.436015 CACATCTTTCTGGTTGCTGAGAG 59.564 47.826 0.00 0.00 0.00 3.20
1529 2762 3.326006 ACATCTTTCTGGTTGCTGAGAGA 59.674 43.478 0.00 0.00 0.00 3.10
1534 2767 4.564782 TTCTGGTTGCTGAGAGATCATT 57.435 40.909 0.00 0.00 0.00 2.57
1535 2768 5.682234 TTCTGGTTGCTGAGAGATCATTA 57.318 39.130 0.00 0.00 0.00 1.90
1546 2790 6.036953 GCTGAGAGATCATTAGTTTCCTTGTG 59.963 42.308 0.00 0.00 0.00 3.33
1559 2803 6.337356 AGTTTCCTTGTGTTTATGTTTGGTG 58.663 36.000 0.00 0.00 0.00 4.17
1561 2805 5.923733 TCCTTGTGTTTATGTTTGGTGTT 57.076 34.783 0.00 0.00 0.00 3.32
1562 2806 7.406031 TTCCTTGTGTTTATGTTTGGTGTTA 57.594 32.000 0.00 0.00 0.00 2.41
1574 3078 4.219507 TGTTTGGTGTTATTATGCAGTGGG 59.780 41.667 0.00 0.00 0.00 4.61
1599 3103 9.000486 GGGTTTATTTATGATGTAGAGCCTTAC 58.000 37.037 0.00 0.00 0.00 2.34
1624 3128 5.901276 AGGATCAAGGTGAATTATGCCAATT 59.099 36.000 0.00 0.00 0.00 2.32
1626 3130 6.183360 GGATCAAGGTGAATTATGCCAATTGA 60.183 38.462 7.12 0.00 0.00 2.57
1630 3134 6.610075 AGGTGAATTATGCCAATTGAAGTT 57.390 33.333 7.12 0.00 0.00 2.66
1632 3136 6.438425 AGGTGAATTATGCCAATTGAAGTTCT 59.562 34.615 7.12 0.00 0.00 3.01
1633 3137 6.532657 GGTGAATTATGCCAATTGAAGTTCTG 59.467 38.462 7.12 0.00 0.00 3.02
1634 3138 7.315142 GTGAATTATGCCAATTGAAGTTCTGA 58.685 34.615 7.12 0.00 0.00 3.27
1635 3139 7.814107 GTGAATTATGCCAATTGAAGTTCTGAA 59.186 33.333 7.12 0.00 0.00 3.02
1636 3140 8.366401 TGAATTATGCCAATTGAAGTTCTGAAA 58.634 29.630 7.12 0.00 0.00 2.69
1638 3142 8.712285 ATTATGCCAATTGAAGTTCTGAAATG 57.288 30.769 7.12 0.00 0.00 2.32
1639 3143 5.534207 TGCCAATTGAAGTTCTGAAATGT 57.466 34.783 7.12 0.00 0.00 2.71
1640 3144 5.291178 TGCCAATTGAAGTTCTGAAATGTG 58.709 37.500 7.12 0.00 0.00 3.21
1641 3145 4.687483 GCCAATTGAAGTTCTGAAATGTGG 59.313 41.667 7.12 7.51 0.00 4.17
1642 3146 5.232463 CCAATTGAAGTTCTGAAATGTGGG 58.768 41.667 7.12 0.00 0.00 4.61
1643 3147 5.232463 CAATTGAAGTTCTGAAATGTGGGG 58.768 41.667 0.00 0.00 0.00 4.96
1644 3148 3.874383 TGAAGTTCTGAAATGTGGGGA 57.126 42.857 4.17 0.00 0.00 4.81
1645 3149 3.754965 TGAAGTTCTGAAATGTGGGGAG 58.245 45.455 4.17 0.00 0.00 4.30
1646 3150 3.138283 TGAAGTTCTGAAATGTGGGGAGT 59.862 43.478 4.17 0.00 0.00 3.85
1647 3151 4.349636 TGAAGTTCTGAAATGTGGGGAGTA 59.650 41.667 4.17 0.00 0.00 2.59
1648 3152 4.287766 AGTTCTGAAATGTGGGGAGTAC 57.712 45.455 0.00 0.00 0.00 2.73
1649 3153 3.009143 AGTTCTGAAATGTGGGGAGTACC 59.991 47.826 0.00 0.00 39.11 3.34
1650 3154 2.626785 TCTGAAATGTGGGGAGTACCA 58.373 47.619 0.00 0.00 42.91 3.25
1671 3175 7.765695 ACCACTGATAAATTGACAGTTGAAT 57.234 32.000 13.67 0.00 41.93 2.57
1673 3177 9.295825 ACCACTGATAAATTGACAGTTGAATAA 57.704 29.630 13.67 0.00 41.93 1.40
1685 3189 6.939730 TGACAGTTGAATAAAAGATGCACCTA 59.060 34.615 0.00 0.00 0.00 3.08
1693 3197 9.237187 TGAATAAAAGATGCACCTATTTGTACA 57.763 29.630 0.00 0.00 0.00 2.90
1694 3198 9.722056 GAATAAAAGATGCACCTATTTGTACAG 57.278 33.333 0.00 0.00 0.00 2.74
1695 3199 8.807948 ATAAAAGATGCACCTATTTGTACAGT 57.192 30.769 0.00 0.00 0.00 3.55
1699 3203 6.003950 AGATGCACCTATTTGTACAGTTGTT 58.996 36.000 0.00 0.00 0.00 2.83
1744 3248 7.587037 TTTTCCTGAACTCTGAATTGACAAT 57.413 32.000 0.00 0.00 0.00 2.71
1928 3449 3.252284 CCAGGTCCAGCTGTGGGT 61.252 66.667 13.81 0.00 45.11 4.51
2000 3532 1.810030 GTGGCGGCGAGGTAAAGAG 60.810 63.158 12.98 0.00 0.00 2.85
2170 3708 2.977914 ACAAAGCATCAGTAGCACGAT 58.022 42.857 0.00 0.00 0.00 3.73
2197 3735 3.704566 AGGGATACGCTGAATCACAAGTA 59.295 43.478 0.00 0.00 37.60 2.24
2221 3759 0.732880 CCTAACAGTCCACAGCGTCG 60.733 60.000 0.00 0.00 0.00 5.12
2224 3762 1.452953 AACAGTCCACAGCGTCGAGA 61.453 55.000 0.00 0.00 0.00 4.04
2434 3974 2.440065 GCAATGCCCATCACCGGA 60.440 61.111 9.46 0.00 0.00 5.14
2525 4065 1.506028 TTTTCAGGGGGAGGCGGATT 61.506 55.000 0.00 0.00 0.00 3.01
2543 4083 1.444933 TTTCCCAGATGGTGGTGAGT 58.555 50.000 0.00 0.00 46.37 3.41
2702 4242 3.288308 CTGCCAGTCCGCGTTCTCT 62.288 63.158 4.92 0.00 0.00 3.10
2706 4246 2.992114 AGTCCGCGTTCTCTGCCT 60.992 61.111 4.92 0.00 0.00 4.75
2742 4282 3.444737 ACGCGAGTTGGTCAGTCT 58.555 55.556 15.93 0.00 46.40 3.24
2743 4283 2.637521 ACGCGAGTTGGTCAGTCTA 58.362 52.632 15.93 0.00 46.40 2.59
2744 4284 0.240411 ACGCGAGTTGGTCAGTCTAC 59.760 55.000 15.93 0.00 46.40 2.59
2745 4285 0.240145 CGCGAGTTGGTCAGTCTACA 59.760 55.000 0.00 0.00 0.00 2.74
2746 4286 1.335597 CGCGAGTTGGTCAGTCTACAA 60.336 52.381 0.00 0.00 0.00 2.41
2747 4287 2.671351 CGCGAGTTGGTCAGTCTACAAT 60.671 50.000 0.00 0.00 0.00 2.71
2748 4288 3.326747 GCGAGTTGGTCAGTCTACAATT 58.673 45.455 0.00 0.00 0.00 2.32
2749 4289 3.746492 GCGAGTTGGTCAGTCTACAATTT 59.254 43.478 0.00 0.00 0.00 1.82
2750 4290 4.143094 GCGAGTTGGTCAGTCTACAATTTC 60.143 45.833 0.00 0.00 0.00 2.17
2751 4291 4.988540 CGAGTTGGTCAGTCTACAATTTCA 59.011 41.667 0.00 0.00 0.00 2.69
2752 4292 5.639506 CGAGTTGGTCAGTCTACAATTTCAT 59.360 40.000 0.00 0.00 0.00 2.57
2753 4293 6.811665 CGAGTTGGTCAGTCTACAATTTCATA 59.188 38.462 0.00 0.00 0.00 2.15
2754 4294 7.009631 CGAGTTGGTCAGTCTACAATTTCATAG 59.990 40.741 0.00 0.00 0.00 2.23
2755 4295 7.680730 AGTTGGTCAGTCTACAATTTCATAGT 58.319 34.615 0.00 0.00 0.00 2.12
2756 4296 7.819900 AGTTGGTCAGTCTACAATTTCATAGTC 59.180 37.037 0.00 0.00 0.00 2.59
2757 4297 6.640518 TGGTCAGTCTACAATTTCATAGTCC 58.359 40.000 0.00 0.00 0.00 3.85
2758 4298 6.212589 TGGTCAGTCTACAATTTCATAGTCCA 59.787 38.462 0.00 0.00 0.00 4.02
2759 4299 6.535508 GGTCAGTCTACAATTTCATAGTCCAC 59.464 42.308 0.00 0.00 0.00 4.02
2800 4340 6.991938 AGGATCTCCTTTCTCGAAATAGATG 58.008 40.000 16.01 0.00 46.09 2.90
2806 4349 7.342284 TCTCCTTTCTCGAAATAGATGGTAACT 59.658 37.037 0.00 0.00 37.61 2.24
2835 4378 1.056660 TCTCTCAGGCCCTCGTTTTT 58.943 50.000 0.00 0.00 0.00 1.94
2865 4409 3.861840 TCTTGAATAAGACAAGCCCTCG 58.138 45.455 0.00 0.00 42.76 4.63
2882 4426 3.746492 CCCTCGGTGTTCTGTTTTCTTAG 59.254 47.826 0.00 0.00 0.00 2.18
2885 4429 2.661979 CGGTGTTCTGTTTTCTTAGCGC 60.662 50.000 0.00 0.00 0.00 5.92
2896 4440 0.459585 TCTTAGCGCGTGAACCATCC 60.460 55.000 8.43 0.00 0.00 3.51
2908 4452 5.768317 CGTGAACCATCCAAGTACAAATTT 58.232 37.500 0.00 0.00 0.00 1.82
2939 4488 9.816354 AAGCTAAAACCGCAATAATATGATTTT 57.184 25.926 0.00 0.00 0.00 1.82
2996 4548 6.869206 AGCTACTTCAGAATTGGTAGGTTA 57.131 37.500 6.85 0.00 39.08 2.85
3152 4713 7.278868 GCTACTATTGTAACATCTTCTGCAGTT 59.721 37.037 14.67 2.59 0.00 3.16
3666 5227 4.559300 GCTGATTGCCACTTTGTGTGTATT 60.559 41.667 0.00 0.00 44.81 1.89
3972 5533 3.327464 TGACCTGAATCAAGATGTGACCA 59.673 43.478 0.00 0.00 39.72 4.02
3987 5548 3.446873 TGTGACCAAAATTTGCAGAGTGT 59.553 39.130 0.00 0.00 0.00 3.55
4039 5601 8.989653 GACTGTTAGTCTGTTAGATTTAGCTT 57.010 34.615 0.00 0.00 41.88 3.74
4040 5602 8.764524 ACTGTTAGTCTGTTAGATTTAGCTTG 57.235 34.615 0.00 0.00 0.00 4.01
4076 5638 3.791887 GCCGTATGATGAGTATGTATCGC 59.208 47.826 0.00 0.00 0.00 4.58
4100 5662 2.859165 TCCTTCCATGTCGAAAAGCT 57.141 45.000 0.00 0.00 0.00 3.74
4111 5673 6.254589 CCATGTCGAAAAGCTTGTGTTTTTAA 59.745 34.615 0.00 0.00 36.87 1.52
4112 5674 7.042791 CCATGTCGAAAAGCTTGTGTTTTTAAT 60.043 33.333 0.00 0.00 36.87 1.40
4130 5692 7.739022 TTTTAATTGACGCATTTCTAGCATG 57.261 32.000 0.00 0.00 0.00 4.06
4134 5696 0.107017 ACGCATTTCTAGCATGCCCT 60.107 50.000 15.66 0.00 43.63 5.19
4143 5705 5.991933 TTCTAGCATGCCCTAGAATCTAG 57.008 43.478 19.95 10.25 44.99 2.43
4149 5711 2.466846 TGCCCTAGAATCTAGTGTGCA 58.533 47.619 15.40 16.28 0.00 4.57
4153 5715 4.684485 GCCCTAGAATCTAGTGTGCATTGT 60.684 45.833 15.40 0.00 0.00 2.71
4172 5734 7.658167 TGCATTGTGATTGTTCAATTCAAATCT 59.342 29.630 14.94 4.00 32.85 2.40
4215 5778 9.813080 GCACAAGTAAAATCTTAACTGACTTAG 57.187 33.333 0.00 0.00 0.00 2.18
4231 5794 4.158579 TGACTTAGGTGTAGATGCACTCAG 59.841 45.833 0.00 0.00 39.21 3.35
4242 5805 8.936864 GTGTAGATGCACTCAGTAAAATTAGTT 58.063 33.333 0.00 0.00 36.51 2.24
4244 5807 9.760660 GTAGATGCACTCAGTAAAATTAGTTTG 57.239 33.333 0.00 0.00 0.00 2.93
4263 5826 7.321745 AGTTTGCAATACAGTTTATCTAGCC 57.678 36.000 0.00 0.00 0.00 3.93
4272 5835 4.463186 ACAGTTTATCTAGCCGTCTGAACT 59.537 41.667 0.00 0.00 0.00 3.01
4273 5836 5.047235 ACAGTTTATCTAGCCGTCTGAACTT 60.047 40.000 0.00 0.00 0.00 2.66
4274 5837 5.517054 CAGTTTATCTAGCCGTCTGAACTTC 59.483 44.000 0.00 0.00 0.00 3.01
4275 5838 2.853731 ATCTAGCCGTCTGAACTTCG 57.146 50.000 0.00 0.00 0.00 3.79
4276 5839 1.531423 TCTAGCCGTCTGAACTTCGT 58.469 50.000 0.00 0.00 0.00 3.85
4277 5840 1.467734 TCTAGCCGTCTGAACTTCGTC 59.532 52.381 0.00 0.00 0.00 4.20
4278 5841 1.469308 CTAGCCGTCTGAACTTCGTCT 59.531 52.381 0.00 0.00 0.00 4.18
4279 5842 0.039074 AGCCGTCTGAACTTCGTCTG 60.039 55.000 0.00 0.00 0.00 3.51
4280 5843 0.039437 GCCGTCTGAACTTCGTCTGA 60.039 55.000 0.00 0.00 0.00 3.27
4281 5844 1.602165 GCCGTCTGAACTTCGTCTGAA 60.602 52.381 0.00 0.00 0.00 3.02
4282 5845 2.052157 CCGTCTGAACTTCGTCTGAAC 58.948 52.381 0.00 0.00 0.00 3.18
4283 5846 2.287668 CCGTCTGAACTTCGTCTGAACT 60.288 50.000 0.00 0.00 0.00 3.01
4284 5847 2.721603 CGTCTGAACTTCGTCTGAACTG 59.278 50.000 0.00 0.00 0.00 3.16
4285 5848 3.707793 GTCTGAACTTCGTCTGAACTGT 58.292 45.455 0.00 0.00 0.00 3.55
4293 5856 1.754803 TCGTCTGAACTGTGTGAACCT 59.245 47.619 0.00 0.00 0.00 3.50
4345 5909 5.292765 TCATCTTATTCGATTGAGAGGTGC 58.707 41.667 11.75 0.00 0.00 5.01
4355 5919 1.967319 TGAGAGGTGCTTGTTTCCAC 58.033 50.000 0.00 0.00 0.00 4.02
4376 5940 6.261158 TCCACGTGAAATAACTTGTTCATCAA 59.739 34.615 19.30 0.00 36.23 2.57
4381 5945 7.060979 CGTGAAATAACTTGTTCATCAATGTGG 59.939 37.037 0.00 0.00 36.23 4.17
4382 5946 8.081633 GTGAAATAACTTGTTCATCAATGTGGA 58.918 33.333 0.00 0.00 36.23 4.02
4388 5952 7.502120 ACTTGTTCATCAATGTGGATATAGC 57.498 36.000 0.00 0.00 35.35 2.97
4390 5954 5.852827 TGTTCATCAATGTGGATATAGCGA 58.147 37.500 0.00 0.00 0.00 4.93
4391 5955 5.696270 TGTTCATCAATGTGGATATAGCGAC 59.304 40.000 0.00 0.00 0.00 5.19
4392 5956 4.820897 TCATCAATGTGGATATAGCGACC 58.179 43.478 0.47 0.00 0.00 4.79
4393 5957 4.283212 TCATCAATGTGGATATAGCGACCA 59.717 41.667 0.47 0.00 0.00 4.02
4394 5958 4.890158 TCAATGTGGATATAGCGACCAT 57.110 40.909 0.47 0.00 36.09 3.55
4395 5959 5.227569 TCAATGTGGATATAGCGACCATT 57.772 39.130 0.47 0.00 36.09 3.16
4396 5960 6.353404 TCAATGTGGATATAGCGACCATTA 57.647 37.500 0.47 0.00 36.09 1.90
4397 5961 6.163476 TCAATGTGGATATAGCGACCATTAC 58.837 40.000 0.47 0.00 36.09 1.89
4398 5962 4.168922 TGTGGATATAGCGACCATTACG 57.831 45.455 0.47 0.00 36.09 3.18
4399 5963 3.570975 TGTGGATATAGCGACCATTACGT 59.429 43.478 0.47 0.00 36.09 3.57
4400 5964 4.038282 TGTGGATATAGCGACCATTACGTT 59.962 41.667 0.00 0.00 36.09 3.99
4404 5968 5.118203 GGATATAGCGACCATTACGTTTCAC 59.882 44.000 0.00 0.00 0.00 3.18
4419 5983 3.657625 CGTTTCACGTTTCTCCATTTTCG 59.342 43.478 0.00 0.00 36.74 3.46
4430 5994 7.486551 CGTTTCTCCATTTTCGGCATAATTTAA 59.513 33.333 0.00 0.00 0.00 1.52
4436 6000 6.237701 CCATTTTCGGCATAATTTAACCAACG 60.238 38.462 0.00 0.00 0.00 4.10
4447 6011 1.219646 TAACCAACGTCGCCAACTTC 58.780 50.000 0.00 0.00 0.00 3.01
4450 6014 1.001633 ACCAACGTCGCCAACTTCTAT 59.998 47.619 0.00 0.00 0.00 1.98
4451 6015 1.393539 CCAACGTCGCCAACTTCTATG 59.606 52.381 0.00 0.00 0.00 2.23
4452 6016 2.066262 CAACGTCGCCAACTTCTATGT 58.934 47.619 0.00 0.00 0.00 2.29
4453 6017 2.450609 ACGTCGCCAACTTCTATGTT 57.549 45.000 0.00 0.00 0.00 2.71
4454 6018 2.762745 ACGTCGCCAACTTCTATGTTT 58.237 42.857 0.00 0.00 0.00 2.83
4455 6019 2.478894 ACGTCGCCAACTTCTATGTTTG 59.521 45.455 0.00 0.00 0.00 2.93
4456 6020 2.734606 CGTCGCCAACTTCTATGTTTGA 59.265 45.455 0.00 0.00 0.00 2.69
4457 6021 3.185594 CGTCGCCAACTTCTATGTTTGAA 59.814 43.478 0.00 0.00 0.00 2.69
4458 6022 4.666655 CGTCGCCAACTTCTATGTTTGAAG 60.667 45.833 0.00 0.00 44.52 3.02
4459 6023 3.188460 TCGCCAACTTCTATGTTTGAAGC 59.812 43.478 0.00 0.00 43.23 3.86
4460 6024 3.492313 GCCAACTTCTATGTTTGAAGCG 58.508 45.455 0.00 0.00 43.23 4.68
4467 6031 5.995897 ACTTCTATGTTTGAAGCGGTAACTT 59.004 36.000 0.00 0.00 43.23 2.66
4468 6032 6.147328 ACTTCTATGTTTGAAGCGGTAACTTC 59.853 38.462 0.00 0.00 45.19 3.01
4469 6033 5.790593 TCTATGTTTGAAGCGGTAACTTCT 58.209 37.500 5.92 0.00 45.20 2.85
4488 6052 7.653767 ACTTCTTATCTTGAAAACACTACGG 57.346 36.000 0.00 0.00 0.00 4.02
4500 6064 6.203338 TGAAAACACTACGGGATTACTGAAAC 59.797 38.462 0.00 0.00 0.00 2.78
4502 6066 5.217978 ACACTACGGGATTACTGAAACAA 57.782 39.130 0.00 0.00 0.00 2.83
4505 6069 5.699458 CACTACGGGATTACTGAAACAACTT 59.301 40.000 0.00 0.00 0.00 2.66
4506 6070 6.204108 CACTACGGGATTACTGAAACAACTTT 59.796 38.462 0.00 0.00 0.00 2.66
4507 6071 6.769341 ACTACGGGATTACTGAAACAACTTTT 59.231 34.615 0.00 0.00 0.00 2.27
4666 6230 0.324460 TCTCCCTCGGAAGGAAGGAC 60.324 60.000 0.00 0.00 46.67 3.85
4669 6233 1.681327 CCTCGGAAGGAAGGACGGA 60.681 63.158 0.00 0.00 46.67 4.69
4770 6334 1.153005 GGAAGCAGATGGGCCTGAG 60.153 63.158 4.53 0.00 36.29 3.35
4796 6360 3.329386 TGAGCCGATCTTCAGACAAAAG 58.671 45.455 0.00 0.00 0.00 2.27
4844 6418 8.382875 CACATATGTGTTGTACTATGTGTTCTG 58.617 37.037 24.91 0.00 40.98 3.02
4898 6472 7.410728 GCGAATGGTGATGAACATTTTAACAAG 60.411 37.037 0.00 0.00 37.43 3.16
4936 6510 0.819582 ACATGTATGCAAAGGCCTGC 59.180 50.000 5.69 8.33 42.95 4.85
4970 6544 6.391537 GTTTTGGAGTGTGTTTTTGTTCCTA 58.608 36.000 0.00 0.00 0.00 2.94
5154 6739 2.364002 ACAATTTGGTGGTTTCTTCCCG 59.636 45.455 0.78 0.00 0.00 5.14
5203 6793 2.133281 TTCATGAGGCATCAACAGGG 57.867 50.000 4.62 0.00 39.39 4.45
5322 6922 2.043992 CACCGGTTCTATGGGGATACA 58.956 52.381 2.97 0.00 39.74 2.29
5323 6923 2.037251 CACCGGTTCTATGGGGATACAG 59.963 54.545 2.97 0.00 39.74 2.74
5329 6929 5.422331 CGGTTCTATGGGGATACAGTATCAT 59.578 44.000 20.17 9.87 36.91 2.45
5386 6988 3.908081 GCCTGCCCATCCATTGCG 61.908 66.667 0.00 0.00 0.00 4.85
5392 6994 1.064621 CCCATCCATTGCGCTTTCG 59.935 57.895 9.73 0.00 39.07 3.46
5402 7004 0.989164 TGCGCTTTCGATCTACGTTG 59.011 50.000 9.73 0.00 43.13 4.10
5438 7040 3.399330 CGTGAATTCAGGTTACAGGTGT 58.601 45.455 17.95 0.00 0.00 4.16
5439 7041 4.561938 CCGTGAATTCAGGTTACAGGTGTA 60.562 45.833 22.78 0.00 0.00 2.90
5440 7042 4.387862 CGTGAATTCAGGTTACAGGTGTAC 59.612 45.833 17.95 0.00 0.00 2.90
5442 7044 5.761234 GTGAATTCAGGTTACAGGTGTACAA 59.239 40.000 8.80 0.00 0.00 2.41
5443 7045 6.430000 GTGAATTCAGGTTACAGGTGTACAAT 59.570 38.462 8.80 0.00 0.00 2.71
5444 7046 7.001674 TGAATTCAGGTTACAGGTGTACAATT 58.998 34.615 3.38 0.00 0.00 2.32
5446 7048 8.561738 AATTCAGGTTACAGGTGTACAATTAG 57.438 34.615 0.00 0.00 0.00 1.73
5452 7112 6.534079 GGTTACAGGTGTACAATTAGCTACTG 59.466 42.308 0.00 0.00 0.00 2.74
5467 7127 2.869192 GCTACTGGCTTCTGATAAGCAC 59.131 50.000 11.47 2.51 44.71 4.40
5468 7128 3.431486 GCTACTGGCTTCTGATAAGCACT 60.431 47.826 11.47 0.00 44.71 4.40
5469 7129 2.983229 ACTGGCTTCTGATAAGCACTG 58.017 47.619 11.47 7.50 44.71 3.66
5470 7130 2.304180 ACTGGCTTCTGATAAGCACTGT 59.696 45.455 11.47 8.00 44.71 3.55
5478 7138 2.165641 CTGATAAGCACTGTCACCGGTA 59.834 50.000 6.87 0.00 0.00 4.02
5591 7324 0.036875 ACCTCCAAAGCTACTGCACC 59.963 55.000 0.00 0.00 42.74 5.01
5597 7330 0.320771 AAAGCTACTGCACCCACGAG 60.321 55.000 0.00 0.00 42.74 4.18
5598 7331 2.125512 GCTACTGCACCCACGAGG 60.126 66.667 0.00 0.00 43.78 4.63
5599 7332 2.125512 CTACTGCACCCACGAGGC 60.126 66.667 0.00 0.00 40.58 4.70
5600 7333 3.665675 CTACTGCACCCACGAGGCC 62.666 68.421 0.00 0.00 40.58 5.19
5607 7340 4.742201 CCCACGAGGCCACGACAG 62.742 72.222 29.67 16.87 37.03 3.51
5608 7341 3.991051 CCACGAGGCCACGACAGT 61.991 66.667 29.67 3.24 37.03 3.55
5609 7342 2.430921 CACGAGGCCACGACAGTC 60.431 66.667 29.67 2.27 37.03 3.51
5610 7343 2.910479 ACGAGGCCACGACAGTCA 60.910 61.111 29.67 0.00 37.03 3.41
5611 7344 2.276116 ACGAGGCCACGACAGTCAT 61.276 57.895 29.67 1.15 37.03 3.06
5702 7762 5.163332 ACCTGAAACGAAGAAAACTACTCCT 60.163 40.000 0.00 0.00 0.00 3.69
5746 7806 0.465460 AAGGACCGCAAACTCAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
5748 7808 0.109597 GGACCGCAAACTCAGCAATG 60.110 55.000 0.00 0.00 0.00 2.82
5751 7811 0.804364 CCGCAAACTCAGCAATGCTA 59.196 50.000 7.70 0.00 36.40 3.49
5752 7812 1.466360 CCGCAAACTCAGCAATGCTAC 60.466 52.381 7.70 0.00 36.40 3.58
5754 7814 2.475187 CGCAAACTCAGCAATGCTACTC 60.475 50.000 7.70 0.00 36.40 2.59
5755 7815 2.746362 GCAAACTCAGCAATGCTACTCT 59.254 45.455 7.70 0.00 36.40 3.24
5756 7816 3.190118 GCAAACTCAGCAATGCTACTCTT 59.810 43.478 7.70 0.00 36.40 2.85
5757 7817 4.320788 GCAAACTCAGCAATGCTACTCTTT 60.321 41.667 7.70 0.58 36.40 2.52
5764 8110 7.088589 TCAGCAATGCTACTCTTTAATTTCC 57.911 36.000 7.70 0.00 36.40 3.13
5765 8111 6.095440 TCAGCAATGCTACTCTTTAATTTCCC 59.905 38.462 7.70 0.00 36.40 3.97
5774 8120 3.602483 TCTTTAATTTCCCCCGAGTTCG 58.398 45.455 0.00 0.00 39.44 3.95
5777 8123 0.958876 AATTTCCCCCGAGTTCGTGC 60.959 55.000 0.48 0.00 37.74 5.34
5780 8126 3.072468 CCCCCGAGTTCGTGCCTA 61.072 66.667 0.48 0.00 37.74 3.93
5785 8131 1.203052 CCCGAGTTCGTGCCTAAGTAA 59.797 52.381 0.48 0.00 37.74 2.24
5793 8139 7.306051 CGAGTTCGTGCCTAAGTAATTAATGAG 60.306 40.741 0.00 0.00 34.11 2.90
5798 8144 6.055588 GTGCCTAAGTAATTAATGAGCCTGA 58.944 40.000 0.00 0.00 0.00 3.86
5836 8182 1.972795 GTACAACCACCACCTGTCCTA 59.027 52.381 0.00 0.00 0.00 2.94
5918 8264 6.015027 TCTTCTTCCGATTCGAATAGATCC 57.985 41.667 18.49 2.03 0.00 3.36
5927 8273 5.163612 CGATTCGAATAGATCCATCTAGCCA 60.164 44.000 11.38 0.00 42.20 4.75
5931 8277 5.359292 TCGAATAGATCCATCTAGCCATCTG 59.641 44.000 2.82 0.00 42.20 2.90
5932 8278 5.356291 AATAGATCCATCTAGCCATCTGC 57.644 43.478 2.82 0.00 42.20 4.26
5933 8279 2.617658 AGATCCATCTAGCCATCTGCA 58.382 47.619 0.00 0.00 44.83 4.41
5934 8280 2.977580 AGATCCATCTAGCCATCTGCAA 59.022 45.455 0.00 0.00 44.83 4.08
5935 8281 3.393609 AGATCCATCTAGCCATCTGCAAA 59.606 43.478 0.00 0.00 44.83 3.68
5936 8282 2.923121 TCCATCTAGCCATCTGCAAAC 58.077 47.619 0.00 0.00 44.83 2.93
5937 8283 2.239402 TCCATCTAGCCATCTGCAAACA 59.761 45.455 0.00 0.00 44.83 2.83
5938 8284 2.357009 CCATCTAGCCATCTGCAAACAC 59.643 50.000 0.00 0.00 44.83 3.32
5939 8285 1.725641 TCTAGCCATCTGCAAACACG 58.274 50.000 0.00 0.00 44.83 4.49
5940 8286 1.001974 TCTAGCCATCTGCAAACACGT 59.998 47.619 0.00 0.00 44.83 4.49
5941 8287 2.232696 TCTAGCCATCTGCAAACACGTA 59.767 45.455 0.00 0.00 44.83 3.57
5942 8288 1.890876 AGCCATCTGCAAACACGTAA 58.109 45.000 0.00 0.00 44.83 3.18
5943 8289 2.226330 AGCCATCTGCAAACACGTAAA 58.774 42.857 0.00 0.00 44.83 2.01
5944 8290 2.819608 AGCCATCTGCAAACACGTAAAT 59.180 40.909 0.00 0.00 44.83 1.40
5945 8291 3.119849 AGCCATCTGCAAACACGTAAATC 60.120 43.478 0.00 0.00 44.83 2.17
5946 8292 3.119849 GCCATCTGCAAACACGTAAATCT 60.120 43.478 0.00 0.00 40.77 2.40
5947 8293 4.406069 CCATCTGCAAACACGTAAATCTG 58.594 43.478 0.00 0.00 0.00 2.90
5948 8294 3.536158 TCTGCAAACACGTAAATCTGC 57.464 42.857 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 3.843027 AGAGGCATTTCTCCTTCTCTGAA 59.157 43.478 0.00 0.00 33.24 3.02
125 126 0.108615 CTGGTCCGTCTAGCCACTTG 60.109 60.000 0.00 0.00 0.00 3.16
203 1391 0.616111 ACCAGAGGTCGCCATCTCTT 60.616 55.000 0.00 0.00 38.19 2.85
293 1481 6.331307 AGGATGCCCTCTTTTGATCTTACTAT 59.669 38.462 0.00 0.00 38.86 2.12
371 1559 1.684983 GTGGGACATAGCTACGGCTTA 59.315 52.381 0.00 0.00 44.68 3.09
416 1604 2.826128 CAAGCTCTACCTGTACCAGACA 59.174 50.000 0.00 0.00 36.35 3.41
456 1644 3.883744 AAGTCCAACGCCTCAGCCG 62.884 63.158 0.00 0.00 34.57 5.52
523 1719 9.950496 AAAATGAGAGAACTAGAGCTTCAATTA 57.050 29.630 0.00 0.00 0.00 1.40
638 1854 1.520787 GGTACATCCGCTTCCCACG 60.521 63.158 0.00 0.00 0.00 4.94
691 1908 5.141568 GCTTTATTACTCAAAAACGTGCGA 58.858 37.500 0.00 0.00 0.00 5.10
698 1915 7.441017 AGCAACATGGCTTTATTACTCAAAAA 58.559 30.769 0.00 0.00 42.71 1.94
699 1916 6.991938 AGCAACATGGCTTTATTACTCAAAA 58.008 32.000 0.00 0.00 42.71 2.44
700 1917 6.588719 AGCAACATGGCTTTATTACTCAAA 57.411 33.333 0.00 0.00 42.71 2.69
795 2014 0.319813 GCCTTGCTTTGCCAACGAAT 60.320 50.000 0.00 0.00 0.00 3.34
802 2021 1.629345 GAATTGCGCCTTGCTTTGCC 61.629 55.000 4.18 0.00 46.63 4.52
812 2032 0.798389 GCGAAGAAAGGAATTGCGCC 60.798 55.000 4.18 0.00 37.32 6.53
845 2065 1.228510 CAAGATGGGCCCCTCTTCC 59.771 63.158 32.76 10.99 29.34 3.46
888 2108 2.204090 ATCCCTGGTTGGACGGGT 60.204 61.111 0.00 0.00 37.20 5.28
900 2120 0.833287 CATCTGAACCGTCCATCCCT 59.167 55.000 0.00 0.00 0.00 4.20
902 2122 1.154205 CGCATCTGAACCGTCCATCC 61.154 60.000 0.00 0.00 0.00 3.51
905 2125 1.080093 GTCGCATCTGAACCGTCCA 60.080 57.895 1.31 0.00 0.00 4.02
943 2165 0.394352 GAGGGATGGGATGCACGTTT 60.394 55.000 0.00 0.00 0.00 3.60
989 2211 1.000827 CTGCTCTGTCTGTCGACTGTT 60.001 52.381 17.92 0.00 40.86 3.16
996 2218 1.735920 CACCGCTGCTCTGTCTGTC 60.736 63.158 0.00 0.00 0.00 3.51
997 2219 2.341543 CACCGCTGCTCTGTCTGT 59.658 61.111 0.00 0.00 0.00 3.41
998 2220 2.433838 CCACCGCTGCTCTGTCTG 60.434 66.667 0.00 0.00 0.00 3.51
999 2221 2.601666 TCCACCGCTGCTCTGTCT 60.602 61.111 0.00 0.00 0.00 3.41
1135 2358 1.817099 CTCCATGGTCTTGGCGAGC 60.817 63.158 12.58 0.00 40.53 5.03
1252 2477 0.249120 CACCTCACCGATACTGGCAA 59.751 55.000 0.00 0.00 0.00 4.52
1400 2633 2.571653 CACTAGGATTCACCAGGGACAA 59.428 50.000 0.00 0.00 42.04 3.18
1403 2636 2.940514 TCACTAGGATTCACCAGGGA 57.059 50.000 0.00 0.00 42.04 4.20
1491 2724 5.534207 AAGATGTGCAATCCTGAACAAAA 57.466 34.783 0.00 0.00 44.64 2.44
1508 2741 3.935315 TCTCTCAGCAACCAGAAAGATG 58.065 45.455 0.00 0.00 0.00 2.90
1509 2742 4.224594 TGATCTCTCAGCAACCAGAAAGAT 59.775 41.667 0.00 0.00 0.00 2.40
1510 2743 3.580022 TGATCTCTCAGCAACCAGAAAGA 59.420 43.478 0.00 0.00 0.00 2.52
1511 2744 3.935315 TGATCTCTCAGCAACCAGAAAG 58.065 45.455 0.00 0.00 0.00 2.62
1512 2745 4.564782 ATGATCTCTCAGCAACCAGAAA 57.435 40.909 0.00 0.00 34.12 2.52
1513 2746 4.564782 AATGATCTCTCAGCAACCAGAA 57.435 40.909 0.00 0.00 34.12 3.02
1515 2748 5.021033 ACTAATGATCTCTCAGCAACCAG 57.979 43.478 0.00 0.00 34.12 4.00
1516 2749 5.426689 AACTAATGATCTCTCAGCAACCA 57.573 39.130 0.00 0.00 34.12 3.67
1519 2752 6.305272 AGGAAACTAATGATCTCTCAGCAA 57.695 37.500 0.00 0.00 40.61 3.91
1521 2754 6.036953 CACAAGGAAACTAATGATCTCTCAGC 59.963 42.308 0.00 0.00 42.68 4.26
1522 2755 7.102346 ACACAAGGAAACTAATGATCTCTCAG 58.898 38.462 0.00 0.00 42.68 3.35
1523 2756 7.009179 ACACAAGGAAACTAATGATCTCTCA 57.991 36.000 0.00 0.00 42.68 3.27
1524 2757 7.913674 AACACAAGGAAACTAATGATCTCTC 57.086 36.000 0.00 0.00 42.68 3.20
1525 2758 9.965902 ATAAACACAAGGAAACTAATGATCTCT 57.034 29.630 0.00 0.00 42.68 3.10
1526 2759 9.994432 CATAAACACAAGGAAACTAATGATCTC 57.006 33.333 0.00 0.00 42.68 2.75
1527 2760 9.520515 ACATAAACACAAGGAAACTAATGATCT 57.479 29.630 0.00 0.00 42.68 2.75
1534 2767 7.122948 ACACCAAACATAAACACAAGGAAACTA 59.877 33.333 0.00 0.00 42.68 2.24
1546 2790 8.859156 CACTGCATAATAACACCAAACATAAAC 58.141 33.333 0.00 0.00 0.00 2.01
1559 2803 9.691362 CATAAATAAACCCCACTGCATAATAAC 57.309 33.333 0.00 0.00 0.00 1.89
1561 2805 9.821240 ATCATAAATAAACCCCACTGCATAATA 57.179 29.630 0.00 0.00 0.00 0.98
1562 2806 8.587608 CATCATAAATAAACCCCACTGCATAAT 58.412 33.333 0.00 0.00 0.00 1.28
1574 3078 9.555727 TGTAAGGCTCTACATCATAAATAAACC 57.444 33.333 0.00 0.00 0.00 3.27
1599 3103 4.209538 TGGCATAATTCACCTTGATCCTG 58.790 43.478 0.00 0.00 0.00 3.86
1608 3112 6.532657 CAGAACTTCAATTGGCATAATTCACC 59.467 38.462 5.42 0.00 0.00 4.02
1624 3128 3.138283 ACTCCCCACATTTCAGAACTTCA 59.862 43.478 0.00 0.00 0.00 3.02
1626 3130 3.884037 ACTCCCCACATTTCAGAACTT 57.116 42.857 0.00 0.00 0.00 2.66
1630 3134 2.626785 TGGTACTCCCCACATTTCAGA 58.373 47.619 0.00 0.00 0.00 3.27
1639 3143 4.785914 TCAATTTATCAGTGGTACTCCCCA 59.214 41.667 0.00 0.00 0.00 4.96
1640 3144 5.123936 GTCAATTTATCAGTGGTACTCCCC 58.876 45.833 0.00 0.00 0.00 4.81
1641 3145 5.741011 TGTCAATTTATCAGTGGTACTCCC 58.259 41.667 0.00 0.00 0.00 4.30
1642 3146 6.407202 ACTGTCAATTTATCAGTGGTACTCC 58.593 40.000 6.25 0.00 40.29 3.85
1643 3147 7.602644 TCAACTGTCAATTTATCAGTGGTACTC 59.397 37.037 7.42 0.00 41.37 2.59
1644 3148 7.450074 TCAACTGTCAATTTATCAGTGGTACT 58.550 34.615 7.42 0.00 41.37 2.73
1645 3149 7.667043 TCAACTGTCAATTTATCAGTGGTAC 57.333 36.000 7.42 0.00 41.37 3.34
1646 3150 8.862325 ATTCAACTGTCAATTTATCAGTGGTA 57.138 30.769 7.42 0.00 41.37 3.25
1647 3151 7.765695 ATTCAACTGTCAATTTATCAGTGGT 57.234 32.000 7.42 0.00 41.37 4.16
1659 3163 6.265196 AGGTGCATCTTTTATTCAACTGTCAA 59.735 34.615 0.00 0.00 0.00 3.18
1671 3175 8.511321 CAACTGTACAAATAGGTGCATCTTTTA 58.489 33.333 3.93 0.00 32.92 1.52
1673 3177 6.490040 ACAACTGTACAAATAGGTGCATCTTT 59.510 34.615 3.93 0.00 35.05 2.52
1676 3180 5.880054 ACAACTGTACAAATAGGTGCATC 57.120 39.130 0.00 0.00 35.05 3.91
1681 3185 9.582648 AATCCTTAAACAACTGTACAAATAGGT 57.417 29.630 0.00 0.00 0.00 3.08
1685 3189 8.706322 AGGAATCCTTAAACAACTGTACAAAT 57.294 30.769 0.00 0.00 0.00 2.32
1693 3197 3.872630 GCCCGAGGAATCCTTAAACAACT 60.873 47.826 2.09 0.00 31.76 3.16
1694 3198 2.422479 GCCCGAGGAATCCTTAAACAAC 59.578 50.000 2.09 0.00 31.76 3.32
1695 3199 2.307686 AGCCCGAGGAATCCTTAAACAA 59.692 45.455 2.09 0.00 31.76 2.83
1699 3203 5.382664 AAAATAGCCCGAGGAATCCTTAA 57.617 39.130 2.09 0.00 31.76 1.85
1744 3248 6.811253 ATCAACCGAAAACAACAGCTATTA 57.189 33.333 0.00 0.00 0.00 0.98
1928 3449 2.817258 GTGTTGGGCTTGTTATGCTGTA 59.183 45.455 0.00 0.00 0.00 2.74
1988 3520 4.811908 GGATTAGATCCTCTTTACCTCGC 58.188 47.826 0.00 0.00 46.19 5.03
2037 3569 1.765657 GGCTCTCTGGATGGCTCCT 60.766 63.158 4.92 0.00 42.59 3.69
2170 3708 3.031013 TGATTCAGCGTATCCCTCTTCA 58.969 45.455 0.00 0.00 0.00 3.02
2197 3735 3.451178 ACGCTGTGGACTGTTAGGAATAT 59.549 43.478 0.00 0.00 0.00 1.28
2221 3759 4.326255 CCATGGGGTGCTTGTCTC 57.674 61.111 2.85 0.00 0.00 3.36
2270 3809 1.153823 CGCCGAACTCCAGACGATT 60.154 57.895 0.00 0.00 0.00 3.34
2434 3974 1.244019 GGTCCTGAAACGCAATGGCT 61.244 55.000 0.00 0.00 38.10 4.75
2472 4012 3.517140 GCAATGGATTCGCGGCCA 61.517 61.111 16.33 16.33 38.78 5.36
2525 4065 0.692476 CACTCACCACCATCTGGGAA 59.308 55.000 0.54 0.00 45.78 3.97
2616 4156 2.315781 GATGACCGCTCCAGATGGCA 62.316 60.000 0.00 0.00 34.44 4.92
2651 4191 1.559814 CATCGCGTTACATGAGCCG 59.440 57.895 5.77 0.00 0.00 5.52
2657 4197 1.660607 CTTGACTGCATCGCGTTACAT 59.339 47.619 5.77 0.00 0.00 2.29
2702 4242 1.304381 GAGACCATTTGGCCAGGCA 60.304 57.895 15.19 0.95 39.32 4.75
2706 4246 0.776810 TTCCAGAGACCATTTGGCCA 59.223 50.000 0.00 0.00 39.32 5.36
2735 4275 7.276658 CAGTGGACTATGAAATTGTAGACTGAC 59.723 40.741 0.00 0.00 40.50 3.51
2736 4276 7.178451 TCAGTGGACTATGAAATTGTAGACTGA 59.822 37.037 0.00 0.00 42.41 3.41
2737 4277 7.323420 TCAGTGGACTATGAAATTGTAGACTG 58.677 38.462 0.00 0.00 39.97 3.51
2738 4278 7.179338 ACTCAGTGGACTATGAAATTGTAGACT 59.821 37.037 0.00 0.00 30.89 3.24
2739 4279 7.324178 ACTCAGTGGACTATGAAATTGTAGAC 58.676 38.462 0.00 0.00 30.89 2.59
2740 4280 7.482169 ACTCAGTGGACTATGAAATTGTAGA 57.518 36.000 0.00 0.00 30.89 2.59
2741 4281 9.653287 TTAACTCAGTGGACTATGAAATTGTAG 57.347 33.333 0.00 0.00 30.89 2.74
2742 4282 9.431887 GTTAACTCAGTGGACTATGAAATTGTA 57.568 33.333 0.00 0.00 30.89 2.41
2743 4283 7.936847 TGTTAACTCAGTGGACTATGAAATTGT 59.063 33.333 7.22 0.00 34.23 2.71
2744 4284 8.322906 TGTTAACTCAGTGGACTATGAAATTG 57.677 34.615 7.22 0.00 0.00 2.32
2745 4285 9.167311 GATGTTAACTCAGTGGACTATGAAATT 57.833 33.333 7.22 0.00 0.00 1.82
2746 4286 7.492669 CGATGTTAACTCAGTGGACTATGAAAT 59.507 37.037 7.22 0.00 0.00 2.17
2747 4287 6.811665 CGATGTTAACTCAGTGGACTATGAAA 59.188 38.462 7.22 0.00 0.00 2.69
2748 4288 6.330278 CGATGTTAACTCAGTGGACTATGAA 58.670 40.000 7.22 0.00 0.00 2.57
2749 4289 5.678871 GCGATGTTAACTCAGTGGACTATGA 60.679 44.000 7.22 0.00 0.00 2.15
2750 4290 4.504461 GCGATGTTAACTCAGTGGACTATG 59.496 45.833 7.22 0.00 0.00 2.23
2751 4291 4.159693 TGCGATGTTAACTCAGTGGACTAT 59.840 41.667 7.22 0.00 0.00 2.12
2752 4292 3.508402 TGCGATGTTAACTCAGTGGACTA 59.492 43.478 7.22 0.00 0.00 2.59
2753 4293 2.299013 TGCGATGTTAACTCAGTGGACT 59.701 45.455 7.22 0.00 0.00 3.85
2754 4294 2.683968 TGCGATGTTAACTCAGTGGAC 58.316 47.619 7.22 0.00 0.00 4.02
2755 4295 3.394674 TTGCGATGTTAACTCAGTGGA 57.605 42.857 7.22 0.00 0.00 4.02
2756 4296 3.120199 CCTTTGCGATGTTAACTCAGTGG 60.120 47.826 7.22 3.08 0.00 4.00
2757 4297 3.745975 TCCTTTGCGATGTTAACTCAGTG 59.254 43.478 7.22 0.00 0.00 3.66
2758 4298 4.002906 TCCTTTGCGATGTTAACTCAGT 57.997 40.909 7.22 0.00 0.00 3.41
2759 4299 4.872691 AGATCCTTTGCGATGTTAACTCAG 59.127 41.667 7.22 0.00 0.00 3.35
2790 4330 9.379791 ACTTCCTTTAAGTTACCATCTATTTCG 57.620 33.333 0.00 0.00 46.61 3.46
2806 4349 2.572104 GGGCCTGAGAGACTTCCTTTAA 59.428 50.000 0.84 0.00 0.00 1.52
2835 4378 8.028938 GGCTTGTCTTATTCAAGAGCATTTAAA 58.971 33.333 9.40 0.00 41.48 1.52
2841 4384 3.009473 AGGGCTTGTCTTATTCAAGAGCA 59.991 43.478 9.40 0.00 41.48 4.26
2843 4387 3.868077 CGAGGGCTTGTCTTATTCAAGAG 59.132 47.826 9.40 0.00 41.48 2.85
2845 4389 2.939103 CCGAGGGCTTGTCTTATTCAAG 59.061 50.000 0.00 0.00 43.31 3.02
2865 4409 2.661979 CGCGCTAAGAAAACAGAACACC 60.662 50.000 5.56 0.00 0.00 4.16
2882 4426 1.017177 TACTTGGATGGTTCACGCGC 61.017 55.000 5.73 0.00 0.00 6.86
2885 4429 5.371115 AATTTGTACTTGGATGGTTCACG 57.629 39.130 0.00 0.00 0.00 4.35
2939 4488 5.450818 AAGGTATGAAGCCTTGTCCATAA 57.549 39.130 0.00 0.00 44.01 1.90
3042 4603 1.003580 TCTCAATTCAGCCCAGGTGAC 59.996 52.381 0.00 0.00 39.84 3.67
3152 4713 5.756833 CAGAACAGCATGCTCAGTGATATTA 59.243 40.000 19.68 0.00 42.53 0.98
3666 5227 2.353704 CGATGAACTCAGTGGCTTACCA 60.354 50.000 0.00 0.00 46.51 3.25
3801 5362 4.938080 AGTGCAGACTTACAGGAATATCG 58.062 43.478 0.00 0.00 0.00 2.92
4056 5618 4.724334 GTCGCGATACATACTCATCATACG 59.276 45.833 14.06 0.00 0.00 3.06
4059 5621 5.378292 AAGTCGCGATACATACTCATCAT 57.622 39.130 14.06 0.00 0.00 2.45
4093 5655 6.623353 GCGTCAATTAAAAACACAAGCTTTTC 59.377 34.615 0.00 0.00 0.00 2.29
4100 5662 7.763172 AGAAATGCGTCAATTAAAAACACAA 57.237 28.000 0.00 0.00 0.00 3.33
4111 5673 3.344904 GCATGCTAGAAATGCGTCAAT 57.655 42.857 11.37 0.00 40.91 2.57
4112 5674 2.830772 GCATGCTAGAAATGCGTCAA 57.169 45.000 11.37 0.00 40.91 3.18
4130 5692 3.760580 ATGCACACTAGATTCTAGGGC 57.239 47.619 20.60 19.77 0.00 5.19
4134 5696 7.105588 ACAATCACAATGCACACTAGATTCTA 58.894 34.615 0.00 0.00 0.00 2.10
4142 5704 4.652421 TTGAACAATCACAATGCACACT 57.348 36.364 0.00 0.00 34.61 3.55
4143 5705 5.462729 TGAATTGAACAATCACAATGCACAC 59.537 36.000 0.00 0.00 37.20 3.82
4149 5711 8.984764 CACAGATTTGAATTGAACAATCACAAT 58.015 29.630 14.89 0.00 38.18 2.71
4172 5734 9.803315 TTACTTGTGCATAATTTTGTTTACACA 57.197 25.926 0.00 0.00 35.18 3.72
4200 5763 7.124298 TGCATCTACACCTAAGTCAGTTAAGAT 59.876 37.037 0.00 0.00 0.00 2.40
4207 5770 4.158579 TGAGTGCATCTACACCTAAGTCAG 59.841 45.833 0.00 0.00 41.67 3.51
4208 5771 4.086457 TGAGTGCATCTACACCTAAGTCA 58.914 43.478 0.00 0.00 41.67 3.41
4210 5773 4.090090 ACTGAGTGCATCTACACCTAAGT 58.910 43.478 0.00 0.00 41.67 2.24
4215 5778 6.743575 AATTTTACTGAGTGCATCTACACC 57.256 37.500 0.00 0.00 41.67 4.16
4242 5805 5.424757 ACGGCTAGATAAACTGTATTGCAA 58.575 37.500 0.00 0.00 0.00 4.08
4244 5807 5.175856 CAGACGGCTAGATAAACTGTATTGC 59.824 44.000 0.00 0.00 0.00 3.56
4252 5815 4.499758 CGAAGTTCAGACGGCTAGATAAAC 59.500 45.833 3.32 0.00 0.00 2.01
4272 5835 2.167693 AGGTTCACACAGTTCAGACGAA 59.832 45.455 0.00 0.00 0.00 3.85
4273 5836 1.754803 AGGTTCACACAGTTCAGACGA 59.245 47.619 0.00 0.00 0.00 4.20
4274 5837 2.225068 AGGTTCACACAGTTCAGACG 57.775 50.000 0.00 0.00 0.00 4.18
4275 5838 4.038162 AGAGTAGGTTCACACAGTTCAGAC 59.962 45.833 0.00 0.00 0.00 3.51
4276 5839 4.215908 AGAGTAGGTTCACACAGTTCAGA 58.784 43.478 0.00 0.00 0.00 3.27
4277 5840 4.592485 AGAGTAGGTTCACACAGTTCAG 57.408 45.455 0.00 0.00 0.00 3.02
4278 5841 6.455647 CATTAGAGTAGGTTCACACAGTTCA 58.544 40.000 0.00 0.00 0.00 3.18
4279 5842 5.348997 GCATTAGAGTAGGTTCACACAGTTC 59.651 44.000 0.00 0.00 0.00 3.01
4280 5843 5.012148 AGCATTAGAGTAGGTTCACACAGTT 59.988 40.000 0.00 0.00 0.00 3.16
4281 5844 4.528596 AGCATTAGAGTAGGTTCACACAGT 59.471 41.667 0.00 0.00 0.00 3.55
4282 5845 5.078411 AGCATTAGAGTAGGTTCACACAG 57.922 43.478 0.00 0.00 0.00 3.66
4283 5846 5.237815 CAAGCATTAGAGTAGGTTCACACA 58.762 41.667 0.00 0.00 0.00 3.72
4284 5847 4.631813 CCAAGCATTAGAGTAGGTTCACAC 59.368 45.833 0.00 0.00 0.00 3.82
4285 5848 4.286032 ACCAAGCATTAGAGTAGGTTCACA 59.714 41.667 0.00 0.00 0.00 3.58
4332 5896 2.160417 GGAAACAAGCACCTCTCAATCG 59.840 50.000 0.00 0.00 0.00 3.34
4339 5903 0.307760 CACGTGGAAACAAGCACCTC 59.692 55.000 7.95 0.00 46.06 3.85
4355 5919 7.060979 CCACATTGATGAACAAGTTATTTCACG 59.939 37.037 0.00 0.00 42.02 4.35
4376 5940 4.219944 ACGTAATGGTCGCTATATCCACAT 59.780 41.667 0.00 0.00 33.91 3.21
4381 5945 6.137227 GTGAAACGTAATGGTCGCTATATC 57.863 41.667 0.00 0.00 0.00 1.63
4398 5962 3.972502 CCGAAAATGGAGAAACGTGAAAC 59.027 43.478 0.00 0.00 0.00 2.78
4399 5963 3.549221 GCCGAAAATGGAGAAACGTGAAA 60.549 43.478 0.00 0.00 0.00 2.69
4400 5964 2.031508 GCCGAAAATGGAGAAACGTGAA 60.032 45.455 0.00 0.00 0.00 3.18
4404 5968 2.919666 ATGCCGAAAATGGAGAAACG 57.080 45.000 0.00 0.00 0.00 3.60
4414 5978 5.770417 ACGTTGGTTAAATTATGCCGAAAA 58.230 33.333 0.00 0.00 0.00 2.29
4419 5983 3.103007 GCGACGTTGGTTAAATTATGCC 58.897 45.455 4.64 0.00 0.00 4.40
4430 5994 0.390124 TAGAAGTTGGCGACGTTGGT 59.610 50.000 4.64 0.00 0.00 3.67
4436 6000 4.712763 CTTCAAACATAGAAGTTGGCGAC 58.287 43.478 0.00 0.00 38.11 5.19
4447 6011 6.481954 AAGAAGTTACCGCTTCAAACATAG 57.518 37.500 8.29 0.00 45.28 2.23
4450 6014 6.228258 AGATAAGAAGTTACCGCTTCAAACA 58.772 36.000 8.29 0.00 45.28 2.83
4451 6015 6.723131 AGATAAGAAGTTACCGCTTCAAAC 57.277 37.500 8.29 0.00 45.28 2.93
4452 6016 6.932400 TCAAGATAAGAAGTTACCGCTTCAAA 59.068 34.615 8.29 0.00 45.28 2.69
4453 6017 6.460781 TCAAGATAAGAAGTTACCGCTTCAA 58.539 36.000 8.29 0.00 45.28 2.69
4454 6018 6.032956 TCAAGATAAGAAGTTACCGCTTCA 57.967 37.500 8.29 0.00 45.28 3.02
4455 6019 6.963049 TTCAAGATAAGAAGTTACCGCTTC 57.037 37.500 0.00 0.00 43.72 3.86
4456 6020 7.227910 TGTTTTCAAGATAAGAAGTTACCGCTT 59.772 33.333 0.00 0.00 0.00 4.68
4457 6021 6.708949 TGTTTTCAAGATAAGAAGTTACCGCT 59.291 34.615 0.00 0.00 0.00 5.52
4458 6022 6.795593 GTGTTTTCAAGATAAGAAGTTACCGC 59.204 38.462 0.00 0.00 0.00 5.68
4459 6023 8.084590 AGTGTTTTCAAGATAAGAAGTTACCG 57.915 34.615 0.00 0.00 0.00 4.02
4467 6031 6.349243 TCCCGTAGTGTTTTCAAGATAAGA 57.651 37.500 0.00 0.00 0.00 2.10
4468 6032 7.611213 AATCCCGTAGTGTTTTCAAGATAAG 57.389 36.000 0.00 0.00 0.00 1.73
4469 6033 8.316214 AGTAATCCCGTAGTGTTTTCAAGATAA 58.684 33.333 0.00 0.00 0.00 1.75
4507 6071 9.177608 CCTTGTTTGATTTCCTAGACATCAATA 57.822 33.333 6.92 0.00 38.15 1.90
4517 6081 5.570034 CGAGGTACCCTTGTTTGATTTCCTA 60.570 44.000 8.74 0.00 31.76 2.94
4666 6230 2.125512 GGTAGCTGTGCCAGTCCG 60.126 66.667 0.00 0.00 33.43 4.79
4669 6233 1.265454 GGTAGGGTAGCTGTGCCAGT 61.265 60.000 0.00 0.00 33.43 4.00
4770 6334 1.005340 CTGAAGATCGGCTCAAGCAC 58.995 55.000 4.13 0.00 44.36 4.40
4796 6360 3.243535 GCAGCCAGCCATAGGTTTATTTC 60.244 47.826 0.00 0.00 37.23 2.17
4833 6397 2.677199 ACTCGCACACAGAACACATAG 58.323 47.619 0.00 0.00 0.00 2.23
4844 6418 2.546368 TCACCAACAATTACTCGCACAC 59.454 45.455 0.00 0.00 0.00 3.82
4911 6485 4.080582 AGGCCTTTGCATACATGTACTACA 60.081 41.667 7.96 3.99 40.13 2.74
4912 6486 4.273480 CAGGCCTTTGCATACATGTACTAC 59.727 45.833 7.96 1.18 40.13 2.73
4913 6487 4.450976 CAGGCCTTTGCATACATGTACTA 58.549 43.478 7.96 0.00 40.13 1.82
4914 6488 3.282021 CAGGCCTTTGCATACATGTACT 58.718 45.455 7.96 0.00 40.13 2.73
4915 6489 2.223572 GCAGGCCTTTGCATACATGTAC 60.224 50.000 7.96 0.00 43.53 2.90
4916 6490 2.023673 GCAGGCCTTTGCATACATGTA 58.976 47.619 0.00 8.27 43.53 2.29
4917 6491 0.819582 GCAGGCCTTTGCATACATGT 59.180 50.000 0.00 2.69 43.53 3.21
4936 6510 1.286880 CTCCAAAACGCAGGCCAAG 59.713 57.895 5.01 0.00 0.00 3.61
4970 6544 7.255451 CCAACCAAATTACTTGTGTACATCACT 60.255 37.037 0.00 0.00 46.27 3.41
4991 6568 0.958822 ATGCAAAACGTCCTCCAACC 59.041 50.000 0.00 0.00 0.00 3.77
5027 6608 0.650512 GCACCGTCATGTTACATCCG 59.349 55.000 0.00 0.93 0.00 4.18
5154 6739 2.509561 GCGAGAGGCCGGAAAGAC 60.510 66.667 5.05 0.00 34.80 3.01
5212 6802 4.692625 CCAGAAATTCAGAACGACATGACT 59.307 41.667 0.00 0.00 0.00 3.41
5345 6945 5.282298 CCCAGGAGTTCTATCCCCATAGATA 60.282 48.000 0.00 0.00 40.66 1.98
5347 6947 3.181406 CCCAGGAGTTCTATCCCCATAGA 60.181 52.174 0.00 0.00 40.53 1.98
5348 6948 3.177228 CCCAGGAGTTCTATCCCCATAG 58.823 54.545 0.00 0.00 40.53 2.23
5349 6949 2.763515 GCCCAGGAGTTCTATCCCCATA 60.764 54.545 0.00 0.00 40.53 2.74
5350 6950 2.047742 GCCCAGGAGTTCTATCCCCAT 61.048 57.143 0.00 0.00 40.53 4.00
5351 6951 0.694444 GCCCAGGAGTTCTATCCCCA 60.694 60.000 0.00 0.00 40.53 4.96
5386 6988 0.297820 CGCCAACGTAGATCGAAAGC 59.702 55.000 0.00 0.00 42.86 3.51
5446 7048 2.869192 GTGCTTATCAGAAGCCAGTAGC 59.131 50.000 0.52 0.00 42.36 3.58
5452 7112 2.675348 GTGACAGTGCTTATCAGAAGCC 59.325 50.000 0.52 0.00 42.36 4.35
5467 7127 4.095782 CCATAAATTTGGTACCGGTGACAG 59.904 45.833 19.93 2.19 31.74 3.51
5468 7128 4.011023 CCATAAATTTGGTACCGGTGACA 58.989 43.478 19.93 13.49 31.74 3.58
5469 7129 4.263435 TCCATAAATTTGGTACCGGTGAC 58.737 43.478 19.93 10.62 38.01 3.67
5470 7130 4.019141 ACTCCATAAATTTGGTACCGGTGA 60.019 41.667 19.93 0.00 38.01 4.02
5478 7138 7.696017 ACCTACAAGTACTCCATAAATTTGGT 58.304 34.615 0.00 0.00 38.01 3.67
5537 7203 7.039313 AGACGTACAGTATTGCATGAAGATA 57.961 36.000 0.00 0.00 0.00 1.98
5591 7324 3.916392 GACTGTCGTGGCCTCGTGG 62.916 68.421 25.10 17.75 0.00 4.94
5597 7330 2.125106 GGGATGACTGTCGTGGCC 60.125 66.667 7.35 0.00 0.00 5.36
5598 7331 1.448540 CAGGGATGACTGTCGTGGC 60.449 63.158 7.35 0.00 33.81 5.01
5599 7332 4.919653 CAGGGATGACTGTCGTGG 57.080 61.111 7.35 0.00 33.81 4.94
5610 7343 3.058341 TGATCCATCCATCAACAGGGAT 58.942 45.455 0.00 0.00 44.43 3.85
5611 7344 2.490961 TGATCCATCCATCAACAGGGA 58.509 47.619 0.00 0.00 36.74 4.20
5617 7675 2.871453 CCTGCATGATCCATCCATCAA 58.129 47.619 0.00 0.00 36.36 2.57
5679 7739 5.177696 CAGGAGTAGTTTTCTTCGTTTCAGG 59.822 44.000 0.00 0.00 0.00 3.86
5702 7762 5.449862 GCGCATCAATTTGGGAATTACTACA 60.450 40.000 0.30 0.00 33.78 2.74
5746 7806 4.165372 TCGGGGGAAATTAAAGAGTAGCAT 59.835 41.667 0.00 0.00 0.00 3.79
5748 7808 4.127907 CTCGGGGGAAATTAAAGAGTAGC 58.872 47.826 0.00 0.00 0.00 3.58
5751 7811 4.586884 GAACTCGGGGGAAATTAAAGAGT 58.413 43.478 0.00 0.00 38.89 3.24
5752 7812 3.621715 CGAACTCGGGGGAAATTAAAGAG 59.378 47.826 0.00 0.00 35.37 2.85
5754 7814 3.126343 CACGAACTCGGGGGAAATTAAAG 59.874 47.826 3.88 0.00 44.95 1.85
5755 7815 3.075884 CACGAACTCGGGGGAAATTAAA 58.924 45.455 3.88 0.00 44.95 1.52
5756 7816 2.702261 CACGAACTCGGGGGAAATTAA 58.298 47.619 3.88 0.00 44.95 1.40
5757 7817 1.676615 GCACGAACTCGGGGGAAATTA 60.677 52.381 3.17 0.00 44.19 1.40
5764 8110 1.153628 CTTAGGCACGAACTCGGGG 60.154 63.158 3.17 0.00 44.19 5.73
5774 8120 6.017852 GTCAGGCTCATTAATTACTTAGGCAC 60.018 42.308 11.50 1.31 32.42 5.01
5777 8123 6.831976 AGGTCAGGCTCATTAATTACTTAGG 58.168 40.000 0.00 0.00 0.00 2.69
5780 8126 5.360591 CGAGGTCAGGCTCATTAATTACTT 58.639 41.667 0.00 0.00 0.00 2.24
5785 8131 1.417890 CCCGAGGTCAGGCTCATTAAT 59.582 52.381 0.00 0.00 0.00 1.40
5854 8200 1.300931 AGACAGCAACGCGTCATGT 60.301 52.632 14.44 17.87 35.68 3.21
5863 8209 5.008217 ACGACTAGATAGATCAGACAGCAAC 59.992 44.000 0.00 0.00 0.00 4.17
5900 8246 5.984695 AGATGGATCTATTCGAATCGGAA 57.015 39.130 15.25 0.00 34.85 4.30
5901 8247 5.066634 GCTAGATGGATCTATTCGAATCGGA 59.933 44.000 15.25 14.22 38.60 4.55
5902 8248 5.277825 GCTAGATGGATCTATTCGAATCGG 58.722 45.833 15.25 9.17 38.60 4.18
5911 8257 4.359996 TGCAGATGGCTAGATGGATCTAT 58.640 43.478 0.00 0.00 45.15 1.98
5914 8260 3.413846 TTGCAGATGGCTAGATGGATC 57.586 47.619 0.00 0.00 45.15 3.36
5918 8264 2.031314 CGTGTTTGCAGATGGCTAGATG 59.969 50.000 0.00 0.00 45.15 2.90
5927 8273 4.083581 GCAGATTTACGTGTTTGCAGAT 57.916 40.909 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.