Multiple sequence alignment - TraesCS6D01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G109800 chr6D 100.000 3668 0 0 996 4663 75747383 75751050 0.000000e+00 6774.0
1 TraesCS6D01G109800 chr6D 100.000 571 0 0 1 571 75746388 75746958 0.000000e+00 1055.0
2 TraesCS6D01G109800 chr6D 88.847 529 34 9 3523 4051 75861783 75862286 1.100000e-175 627.0
3 TraesCS6D01G109800 chr6A 94.735 3172 121 19 996 4134 91863509 91866667 0.000000e+00 4891.0
4 TraesCS6D01G109800 chr6A 84.888 536 47 18 30 556 91862465 91862975 1.160000e-140 510.0
5 TraesCS6D01G109800 chr6A 77.812 640 83 37 3631 4230 81304883 81304263 1.610000e-89 340.0
6 TraesCS6D01G109800 chr6A 81.918 365 35 20 3631 3980 81306137 81305789 3.550000e-71 279.0
7 TraesCS6D01G109800 chr6A 90.588 85 6 2 4438 4521 91866968 91867051 1.370000e-20 111.0
8 TraesCS6D01G109800 chr6B 93.554 3196 110 29 1003 4138 149415305 149418464 0.000000e+00 4673.0
9 TraesCS6D01G109800 chr6B 78.521 568 71 24 3282 3832 141622631 141623164 4.500000e-85 326.0
10 TraesCS6D01G109800 chr6B 87.500 80 10 0 1 80 149410703 149410782 4.970000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G109800 chr6D 75746388 75751050 4662 False 3914.500000 6774 100.000000 1 4663 2 chr6D.!!$F2 4662
1 TraesCS6D01G109800 chr6D 75861783 75862286 503 False 627.000000 627 88.847000 3523 4051 1 chr6D.!!$F1 528
2 TraesCS6D01G109800 chr6A 91862465 91867051 4586 False 1837.333333 4891 90.070333 30 4521 3 chr6A.!!$F1 4491
3 TraesCS6D01G109800 chr6A 81304263 81306137 1874 True 309.500000 340 79.865000 3631 4230 2 chr6A.!!$R1 599
4 TraesCS6D01G109800 chr6B 149415305 149418464 3159 False 4673.000000 4673 93.554000 1003 4138 1 chr6B.!!$F3 3135
5 TraesCS6D01G109800 chr6B 141622631 141623164 533 False 326.000000 326 78.521000 3282 3832 1 chr6B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 304 0.035056 CGAAATCCAGGCCAGGAAGT 60.035 55.000 22.25 11.87 41.92 3.01 F
409 443 0.236187 GGTGTACACGCAATTTCGCA 59.764 50.000 19.41 0.00 0.00 5.10 F
534 569 0.334676 CCTCACCTCACCTCTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69 F
1412 1564 1.076850 TGGGCGTCGAGTGGGTATA 60.077 57.895 0.00 0.00 0.00 1.47 F
2179 2350 1.612950 TGTTGCCTTGTGCCAGTATTG 59.387 47.619 0.00 0.00 40.16 1.90 F
3009 3204 1.334149 GGTGTTCTTGCTGTTTCTCGC 60.334 52.381 0.00 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 1459 0.476338 TCTCTCCTCATCTCCCTCGG 59.524 60.000 0.00 0.0 0.00 4.63 R
1317 1469 1.213182 ACAGCTACGGATCTCTCCTCA 59.787 52.381 0.00 0.0 39.65 3.86 R
1710 1879 2.242043 CCATGGATTTATGTCTGCCCC 58.758 52.381 5.56 0.0 0.00 5.80 R
2835 3029 4.081752 GCTTCCTCAATTCTCTGTCTCTCA 60.082 45.833 0.00 0.0 0.00 3.27 R
3628 3844 0.035458 CTTGGCGACCTCCTCACTTT 59.965 55.000 0.00 0.0 0.00 2.66 R
4352 6002 0.030369 GGATGGTACTACCGTGCGAG 59.970 60.000 4.55 0.0 42.58 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.000780 GGTTCATGATAAAGACCAAATAAGCT 57.999 34.615 8.38 0.00 0.00 3.74
26 27 8.131731 GGTTCATGATAAAGACCAAATAAGCTC 58.868 37.037 8.38 0.00 0.00 4.09
27 28 8.897752 GTTCATGATAAAGACCAAATAAGCTCT 58.102 33.333 0.00 0.00 0.00 4.09
56 57 2.223782 TGTGCAATCCAGTCAAACTTGC 60.224 45.455 0.00 0.00 41.88 4.01
60 61 3.243501 GCAATCCAGTCAAACTTGCTCAA 60.244 43.478 0.00 0.00 39.21 3.02
61 62 4.543692 CAATCCAGTCAAACTTGCTCAAG 58.456 43.478 7.99 7.99 43.79 3.02
67 68 5.450965 CCAGTCAAACTTGCTCAAGACATTT 60.451 40.000 15.74 4.20 40.79 2.32
77 78 7.445402 ACTTGCTCAAGACATTTAAGCTCTAAA 59.555 33.333 15.74 0.00 40.79 1.85
82 83 8.268850 TCAAGACATTTAAGCTCTAAACATCC 57.731 34.615 0.00 0.00 0.00 3.51
83 84 7.882791 TCAAGACATTTAAGCTCTAAACATCCA 59.117 33.333 0.00 0.00 0.00 3.41
84 85 7.617041 AGACATTTAAGCTCTAAACATCCAC 57.383 36.000 0.00 0.00 0.00 4.02
85 86 7.398024 AGACATTTAAGCTCTAAACATCCACT 58.602 34.615 0.00 0.00 0.00 4.00
86 87 7.550906 AGACATTTAAGCTCTAAACATCCACTC 59.449 37.037 0.00 0.00 0.00 3.51
87 88 7.168219 ACATTTAAGCTCTAAACATCCACTCA 58.832 34.615 0.00 0.00 0.00 3.41
89 90 8.680903 CATTTAAGCTCTAAACATCCACTCAAT 58.319 33.333 0.00 0.00 0.00 2.57
90 91 8.635765 TTTAAGCTCTAAACATCCACTCAATT 57.364 30.769 0.00 0.00 0.00 2.32
91 92 9.733556 TTTAAGCTCTAAACATCCACTCAATTA 57.266 29.630 0.00 0.00 0.00 1.40
92 93 9.733556 TTAAGCTCTAAACATCCACTCAATTAA 57.266 29.630 0.00 0.00 0.00 1.40
141 144 7.992180 ATCCGCAAAGATTAAATGAACATTC 57.008 32.000 0.45 0.00 0.00 2.67
143 146 7.028962 TCCGCAAAGATTAAATGAACATTCAG 58.971 34.615 0.23 0.00 41.08 3.02
144 147 7.028962 CCGCAAAGATTAAATGAACATTCAGA 58.971 34.615 0.23 0.00 41.08 3.27
151 154 6.983474 TTAAATGAACATTCAGATGCTCGA 57.017 33.333 0.23 0.00 41.08 4.04
155 158 3.064408 TGAACATTCAGATGCTCGATTGC 59.936 43.478 0.00 0.00 36.72 3.56
173 176 1.352156 GCAAAGGAGTACTCGCACGG 61.352 60.000 16.56 6.35 0.00 4.94
181 184 0.099968 GTACTCGCACGGTCTATGCA 59.900 55.000 0.00 0.00 43.57 3.96
193 196 0.758734 TCTATGCACCCATTCGGAGG 59.241 55.000 0.00 0.00 34.64 4.30
213 216 3.132467 AGGGAGTAGTTTCTATCAACGGC 59.868 47.826 0.00 0.00 0.00 5.68
218 250 2.877335 AGTTTCTATCAACGGCGACTC 58.123 47.619 16.62 0.00 0.00 3.36
226 258 1.338973 TCAACGGCGACTCTACTTTGT 59.661 47.619 16.62 0.00 0.00 2.83
235 267 6.196724 CGGCGACTCTACTTTGTTAAATCTAG 59.803 42.308 0.00 0.00 0.00 2.43
236 268 7.034397 GGCGACTCTACTTTGTTAAATCTAGT 58.966 38.462 0.00 0.00 0.00 2.57
237 269 8.186821 GGCGACTCTACTTTGTTAAATCTAGTA 58.813 37.037 0.00 0.00 0.00 1.82
238 270 9.008289 GCGACTCTACTTTGTTAAATCTAGTAC 57.992 37.037 0.00 0.00 0.00 2.73
239 271 9.500864 CGACTCTACTTTGTTAAATCTAGTACC 57.499 37.037 0.00 0.00 0.00 3.34
254 286 8.882415 AATCTAGTACCACAAATAATACACCG 57.118 34.615 0.00 0.00 0.00 4.94
262 294 6.094881 ACCACAAATAATACACCGAAATCCAG 59.905 38.462 0.00 0.00 0.00 3.86
267 299 0.251916 TACACCGAAATCCAGGCCAG 59.748 55.000 5.01 0.00 0.00 4.85
270 302 1.302949 CCGAAATCCAGGCCAGGAA 59.697 57.895 22.25 4.82 41.92 3.36
271 303 0.749454 CCGAAATCCAGGCCAGGAAG 60.749 60.000 22.25 12.39 41.92 3.46
272 304 0.035056 CGAAATCCAGGCCAGGAAGT 60.035 55.000 22.25 11.87 41.92 3.01
273 305 1.614317 CGAAATCCAGGCCAGGAAGTT 60.614 52.381 22.25 17.62 41.92 2.66
274 306 2.095461 GAAATCCAGGCCAGGAAGTTC 58.905 52.381 22.25 21.52 41.92 3.01
275 307 0.332972 AATCCAGGCCAGGAAGTTCC 59.667 55.000 22.25 14.54 41.92 3.62
277 309 0.772124 TCCAGGCCAGGAAGTTCCTT 60.772 55.000 22.36 4.74 46.91 3.36
278 310 0.322906 CCAGGCCAGGAAGTTCCTTC 60.323 60.000 22.36 15.75 46.91 3.46
279 311 0.401738 CAGGCCAGGAAGTTCCTTCA 59.598 55.000 22.36 0.00 46.91 3.02
280 312 1.149101 AGGCCAGGAAGTTCCTTCAA 58.851 50.000 22.36 0.00 46.91 2.69
281 313 1.202940 AGGCCAGGAAGTTCCTTCAAC 60.203 52.381 22.36 12.28 46.91 3.18
282 314 1.478654 GGCCAGGAAGTTCCTTCAACA 60.479 52.381 22.36 0.00 46.91 3.33
283 315 2.306847 GCCAGGAAGTTCCTTCAACAA 58.693 47.619 22.36 0.00 46.91 2.83
284 316 2.693074 GCCAGGAAGTTCCTTCAACAAA 59.307 45.455 22.36 0.00 46.91 2.83
285 317 3.132111 GCCAGGAAGTTCCTTCAACAAAA 59.868 43.478 22.36 0.00 46.91 2.44
286 318 4.382577 GCCAGGAAGTTCCTTCAACAAAAA 60.383 41.667 22.36 0.00 46.91 1.94
316 348 1.637553 AGGCCAGGAATGTGACAGAAT 59.362 47.619 5.01 0.00 0.00 2.40
334 366 8.236586 TGACAGAATCAATAATTTCCAGAAACG 58.763 33.333 0.00 0.00 33.02 3.60
367 399 2.415697 AATGGCACGAAAGAAAACCG 57.584 45.000 0.00 0.00 0.00 4.44
368 400 1.600023 ATGGCACGAAAGAAAACCGA 58.400 45.000 0.00 0.00 0.00 4.69
384 418 1.067142 ACCGAAAACATAGCAGAGCGA 60.067 47.619 0.00 0.00 0.00 4.93
404 438 1.071699 AGGTGAGGTGTACACGCAATT 59.928 47.619 19.41 8.93 38.90 2.32
405 439 1.877443 GGTGAGGTGTACACGCAATTT 59.123 47.619 19.41 1.18 38.90 1.82
406 440 2.095919 GGTGAGGTGTACACGCAATTTC 60.096 50.000 19.41 10.16 38.90 2.17
407 441 1.795872 TGAGGTGTACACGCAATTTCG 59.204 47.619 19.41 0.00 0.00 3.46
408 442 0.515564 AGGTGTACACGCAATTTCGC 59.484 50.000 19.41 2.66 0.00 4.70
409 443 0.236187 GGTGTACACGCAATTTCGCA 59.764 50.000 19.41 0.00 0.00 5.10
410 444 1.334239 GGTGTACACGCAATTTCGCAA 60.334 47.619 19.41 0.00 0.00 4.85
411 445 2.580589 GTGTACACGCAATTTCGCAAT 58.419 42.857 10.84 0.00 0.00 3.56
531 566 1.687493 CCCCTCACCTCACCTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
532 567 1.390125 CCCTCACCTCACCTCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
533 568 0.686112 CCCTCACCTCACCTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
534 569 0.334676 CCTCACCTCACCTCTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
535 570 1.684869 CCTCACCTCACCTCTCCTCTC 60.685 61.905 0.00 0.00 0.00 3.20
536 571 1.284785 CTCACCTCACCTCTCCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
537 572 1.283613 TCACCTCACCTCTCCTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
538 573 1.284785 CACCTCACCTCTCCTCTCTCT 59.715 57.143 0.00 0.00 0.00 3.10
539 574 1.564348 ACCTCACCTCTCCTCTCTCTC 59.436 57.143 0.00 0.00 0.00 3.20
540 575 1.846439 CCTCACCTCTCCTCTCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
541 576 2.158755 CCTCACCTCTCCTCTCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
542 577 2.774234 CTCACCTCTCCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
543 578 2.771943 TCACCTCTCCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
544 579 2.774234 CACCTCTCCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
545 580 3.041946 ACCTCTCCTCTCTCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
546 581 3.310954 ACCTCTCCTCTCTCTCTCTCTCT 60.311 52.174 0.00 0.00 0.00 3.10
547 582 3.323403 CCTCTCCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
548 583 4.222336 CTCTCCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
549 584 4.219115 TCTCCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
550 585 4.078922 TCTCCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
551 586 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
558 593 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
1236 1388 2.556287 CGCGTCCTGGTTGCTTTC 59.444 61.111 0.00 0.00 0.00 2.62
1237 1389 1.961277 CGCGTCCTGGTTGCTTTCT 60.961 57.895 0.00 0.00 0.00 2.52
1308 1460 4.838046 GCTCCGTAGCCTCTTTCC 57.162 61.111 0.00 0.00 43.40 3.13
1345 1497 2.025155 GATCCGTAGCTGTTGAGAGGA 58.975 52.381 0.00 0.00 0.00 3.71
1351 1503 3.184683 CTGTTGAGAGGAGCGCGC 61.185 66.667 26.66 26.66 0.00 6.86
1384 1536 2.435586 CTCTTGCCTCTGCCGTGG 60.436 66.667 0.00 0.00 36.33 4.94
1412 1564 1.076850 TGGGCGTCGAGTGGGTATA 60.077 57.895 0.00 0.00 0.00 1.47
1543 1704 3.889815 TCGGGTACTAAATTCTCCGAGA 58.110 45.455 0.00 0.00 41.11 4.04
1559 1720 2.036346 CCGAGAGATCACATGCCACATA 59.964 50.000 0.00 0.00 0.00 2.29
1596 1757 4.342862 CGTGAGGATCTGGGTAAATGAT 57.657 45.455 0.00 0.00 34.92 2.45
1714 1883 8.358582 AGAGATTCATTAAATAATCATGGGGC 57.641 34.615 12.90 0.00 35.07 5.80
1715 1884 7.951806 AGAGATTCATTAAATAATCATGGGGCA 59.048 33.333 12.90 0.00 35.07 5.36
1716 1885 8.130671 AGATTCATTAAATAATCATGGGGCAG 57.869 34.615 12.90 0.00 35.07 4.85
1717 1886 7.951806 AGATTCATTAAATAATCATGGGGCAGA 59.048 33.333 12.90 0.00 35.07 4.26
1718 1887 6.899393 TCATTAAATAATCATGGGGCAGAC 57.101 37.500 0.00 0.00 0.00 3.51
2157 2328 4.688511 TGTTTGGCGTATTTGATGGTAC 57.311 40.909 0.00 0.00 0.00 3.34
2179 2350 1.612950 TGTTGCCTTGTGCCAGTATTG 59.387 47.619 0.00 0.00 40.16 1.90
2374 2545 4.574013 GCTGCTATTGGTATGCCTATCATC 59.426 45.833 0.16 0.00 36.63 2.92
2375 2546 5.737860 CTGCTATTGGTATGCCTATCATCA 58.262 41.667 0.16 0.00 36.63 3.07
2376 2547 6.317663 TGCTATTGGTATGCCTATCATCAT 57.682 37.500 0.16 0.00 36.63 2.45
2377 2548 6.351711 TGCTATTGGTATGCCTATCATCATC 58.648 40.000 0.16 0.00 36.63 2.92
2378 2549 6.070078 TGCTATTGGTATGCCTATCATCATCA 60.070 38.462 0.16 0.00 36.63 3.07
2430 2623 2.277969 CAGGCAGAGTGTGATCATGAC 58.722 52.381 0.00 0.00 0.00 3.06
2835 3029 2.705658 TCACAAACCTGACCAGACAGAT 59.294 45.455 0.00 0.00 39.94 2.90
2892 3086 4.275936 GTGATGTGGGCTGGTATTGTTATC 59.724 45.833 0.00 0.00 0.00 1.75
3009 3204 1.334149 GGTGTTCTTGCTGTTTCTCGC 60.334 52.381 0.00 0.00 0.00 5.03
3222 3426 3.690460 CAAGGAAGAAATAGTGGGCACT 58.310 45.455 0.00 0.00 45.02 4.40
3227 3431 4.080526 GGAAGAAATAGTGGGCACTCCTTA 60.081 45.833 0.00 0.00 42.54 2.69
3272 3476 5.186198 AGGCTATTACACTTGGTGATTGAC 58.814 41.667 4.62 0.00 36.96 3.18
3609 3825 2.415010 CTGGAGATGGACCGAGCG 59.585 66.667 0.00 0.00 0.00 5.03
3610 3826 2.044352 TGGAGATGGACCGAGCGA 60.044 61.111 0.00 0.00 0.00 4.93
3611 3827 2.069465 CTGGAGATGGACCGAGCGAG 62.069 65.000 0.00 0.00 0.00 5.03
3612 3828 2.725008 GAGATGGACCGAGCGAGG 59.275 66.667 0.00 0.00 37.30 4.63
3613 3829 1.824329 GAGATGGACCGAGCGAGGA 60.824 63.158 7.50 0.00 34.73 3.71
3614 3830 1.791103 GAGATGGACCGAGCGAGGAG 61.791 65.000 7.50 0.00 34.73 3.69
3615 3831 2.835431 ATGGACCGAGCGAGGAGG 60.835 66.667 7.50 0.00 34.73 4.30
3616 3832 3.663815 ATGGACCGAGCGAGGAGGT 62.664 63.158 7.50 0.00 41.63 3.85
3617 3833 3.069318 GGACCGAGCGAGGAGGTT 61.069 66.667 7.50 0.00 38.57 3.50
3618 3834 2.182030 GACCGAGCGAGGAGGTTG 59.818 66.667 7.50 0.00 38.57 3.77
3619 3835 3.991536 GACCGAGCGAGGAGGTTGC 62.992 68.421 7.50 0.00 38.57 4.17
3620 3836 4.821589 CCGAGCGAGGAGGTTGCC 62.822 72.222 0.00 0.00 35.94 4.52
3621 3837 4.069232 CGAGCGAGGAGGTTGCCA 62.069 66.667 0.00 0.00 35.94 4.92
3622 3838 2.347490 GAGCGAGGAGGTTGCCAA 59.653 61.111 0.00 0.00 35.94 4.52
3623 3839 1.743252 GAGCGAGGAGGTTGCCAAG 60.743 63.158 0.00 0.00 35.94 3.61
3624 3840 2.747855 GCGAGGAGGTTGCCAAGG 60.748 66.667 0.00 0.00 0.00 3.61
3625 3841 3.068881 CGAGGAGGTTGCCAAGGA 58.931 61.111 0.00 0.00 0.00 3.36
3626 3842 1.376037 CGAGGAGGTTGCCAAGGAC 60.376 63.158 0.00 0.00 0.00 3.85
3627 3843 1.002011 GAGGAGGTTGCCAAGGACC 60.002 63.158 0.00 0.00 36.15 4.46
3628 3844 1.774217 AGGAGGTTGCCAAGGACCA 60.774 57.895 0.00 0.00 38.42 4.02
3629 3845 1.152830 GGAGGTTGCCAAGGACCAA 59.847 57.895 0.00 0.00 38.42 3.67
3709 5222 2.543641 CGCTGTTGTATCTGATGCTCA 58.456 47.619 7.26 5.86 0.00 4.26
4010 5544 4.019792 TGTGCTCATGGTGTCATACTTT 57.980 40.909 0.00 0.00 31.33 2.66
4014 5548 6.051717 GTGCTCATGGTGTCATACTTTAGAT 58.948 40.000 0.00 0.00 31.33 1.98
4023 5557 7.606456 TGGTGTCATACTTTAGATTTCAGAACC 59.394 37.037 0.00 0.00 0.00 3.62
4028 5562 4.385825 ACTTTAGATTTCAGAACCGTGCA 58.614 39.130 0.00 0.00 0.00 4.57
4031 5565 3.057969 AGATTTCAGAACCGTGCATCA 57.942 42.857 0.00 0.00 0.00 3.07
4044 5580 8.519526 AGAACCGTGCATCAATTTTATTTAAGA 58.480 29.630 0.00 0.00 0.00 2.10
4064 5609 3.836562 AGATTTCCTTGCAGAGCCAAAAT 59.163 39.130 0.00 0.00 0.00 1.82
4076 5622 7.145323 TGCAGAGCCAAAATAAACTCTTTTAC 58.855 34.615 0.00 0.00 37.40 2.01
4086 5632 9.429109 AAAATAAACTCTTTTACCCCTCTTTGA 57.571 29.630 0.00 0.00 29.77 2.69
4130 5684 4.626287 TGGAGCCAGTTATGGATTCAGAAC 60.626 45.833 3.11 3.11 45.88 3.01
4221 5866 8.148351 TGTAAGCTTCACATAAACAGTAGAACT 58.852 33.333 0.00 0.00 0.00 3.01
4243 5888 9.912634 GAACTGAATAATTGTGGATTTGAAAGA 57.087 29.630 0.00 0.00 0.00 2.52
4262 5912 4.311816 AGAAAAATATGCGCCTGGATTG 57.688 40.909 4.18 0.00 0.00 2.67
4273 5923 2.030363 CGCCTGGATTGTTTTAGTGCAA 60.030 45.455 0.00 0.00 0.00 4.08
4279 5929 8.792633 GCCTGGATTGTTTTAGTGCAATATATA 58.207 33.333 0.00 0.00 35.69 0.86
4310 5960 3.742433 ATGGATGATGAAGACGAGTCC 57.258 47.619 0.00 0.00 0.00 3.85
4316 5966 3.914312 TGATGAAGACGAGTCCTCAAAC 58.086 45.455 8.40 6.93 34.16 2.93
4338 5988 3.354948 TGGATGTTCAGCTGCTTACAT 57.645 42.857 20.84 20.84 34.14 2.29
4340 5990 4.842574 TGGATGTTCAGCTGCTTACATTA 58.157 39.130 21.34 14.12 31.76 1.90
4341 5991 5.252547 TGGATGTTCAGCTGCTTACATTAA 58.747 37.500 21.34 13.46 31.76 1.40
4342 5992 5.709631 TGGATGTTCAGCTGCTTACATTAAA 59.290 36.000 21.34 11.73 31.76 1.52
4344 5994 6.094048 GGATGTTCAGCTGCTTACATTAAAGA 59.906 38.462 21.34 4.84 31.76 2.52
4345 5995 7.201767 GGATGTTCAGCTGCTTACATTAAAGAT 60.202 37.037 21.34 8.67 31.76 2.40
4346 5996 8.737168 ATGTTCAGCTGCTTACATTAAAGATA 57.263 30.769 17.05 0.00 0.00 1.98
4348 5998 8.668353 TGTTCAGCTGCTTACATTAAAGATAAG 58.332 33.333 9.47 0.00 0.00 1.73
4355 6005 6.358762 GCTTACATTAAAGATAAGCAGCTCG 58.641 40.000 17.38 0.00 46.56 5.03
4356 6006 4.802876 ACATTAAAGATAAGCAGCTCGC 57.197 40.909 0.00 0.47 42.91 5.03
4357 6007 4.191544 ACATTAAAGATAAGCAGCTCGCA 58.808 39.130 0.00 0.00 46.13 5.10
4358 6008 4.034510 ACATTAAAGATAAGCAGCTCGCAC 59.965 41.667 0.00 0.00 46.13 5.34
4359 6009 1.002366 AAAGATAAGCAGCTCGCACG 58.998 50.000 0.00 0.00 46.13 5.34
4360 6010 0.807667 AAGATAAGCAGCTCGCACGG 60.808 55.000 0.00 0.00 46.13 4.94
4361 6011 1.519455 GATAAGCAGCTCGCACGGT 60.519 57.895 0.00 0.00 46.13 4.83
4362 6012 0.248907 GATAAGCAGCTCGCACGGTA 60.249 55.000 0.00 0.00 46.13 4.02
4363 6013 0.249073 ATAAGCAGCTCGCACGGTAG 60.249 55.000 0.00 0.00 46.13 3.18
4364 6014 1.592400 TAAGCAGCTCGCACGGTAGT 61.592 55.000 0.00 0.00 46.13 2.73
4365 6015 1.592400 AAGCAGCTCGCACGGTAGTA 61.592 55.000 0.00 0.00 46.13 1.82
4366 6016 1.872679 GCAGCTCGCACGGTAGTAC 60.873 63.158 3.64 0.00 41.79 2.73
4367 6017 1.226603 CAGCTCGCACGGTAGTACC 60.227 63.158 9.50 9.50 34.05 3.34
4368 6018 1.676635 AGCTCGCACGGTAGTACCA 60.677 57.895 19.41 0.00 38.47 3.25
4369 6019 1.035932 AGCTCGCACGGTAGTACCAT 61.036 55.000 19.41 0.01 38.47 3.55
4370 6020 0.594284 GCTCGCACGGTAGTACCATC 60.594 60.000 19.41 6.31 38.47 3.51
4371 6021 0.030369 CTCGCACGGTAGTACCATCC 59.970 60.000 19.41 5.25 38.47 3.51
4372 6022 0.680601 TCGCACGGTAGTACCATCCA 60.681 55.000 19.41 0.00 38.47 3.41
4373 6023 0.248907 CGCACGGTAGTACCATCCAG 60.249 60.000 19.41 4.98 38.47 3.86
4374 6024 0.529992 GCACGGTAGTACCATCCAGC 60.530 60.000 19.41 10.65 38.47 4.85
4375 6025 0.821517 CACGGTAGTACCATCCAGCA 59.178 55.000 19.41 0.00 38.47 4.41
4376 6026 1.206132 CACGGTAGTACCATCCAGCAA 59.794 52.381 19.41 0.00 38.47 3.91
4377 6027 2.116238 ACGGTAGTACCATCCAGCAAT 58.884 47.619 19.41 0.00 38.47 3.56
4378 6028 2.504175 ACGGTAGTACCATCCAGCAATT 59.496 45.455 19.41 0.00 38.47 2.32
4379 6029 2.872245 CGGTAGTACCATCCAGCAATTG 59.128 50.000 19.41 0.00 38.47 2.32
4380 6030 2.618709 GGTAGTACCATCCAGCAATTGC 59.381 50.000 23.05 23.05 38.42 3.56
4381 6031 4.841703 GGTAGTACCATCCAGCAATTGCG 61.842 52.174 24.02 17.96 41.60 4.85
4383 6033 7.921139 GGTAGTACCATCCAGCAATTGCGTA 62.921 48.000 24.02 15.62 41.60 4.42
4386 6036 3.588755 ACCATCCAGCAATTGCGTATGG 61.589 50.000 35.20 35.20 45.89 2.74
4392 6042 2.362169 GCAATTGCGTATGGTGGTTT 57.638 45.000 15.87 0.00 0.00 3.27
4393 6043 2.682836 GCAATTGCGTATGGTGGTTTT 58.317 42.857 15.87 0.00 0.00 2.43
4394 6044 3.839293 GCAATTGCGTATGGTGGTTTTA 58.161 40.909 15.87 0.00 0.00 1.52
4395 6045 3.610677 GCAATTGCGTATGGTGGTTTTAC 59.389 43.478 15.87 0.00 0.00 2.01
4396 6046 4.799678 CAATTGCGTATGGTGGTTTTACA 58.200 39.130 0.00 0.00 0.00 2.41
4397 6047 5.223382 CAATTGCGTATGGTGGTTTTACAA 58.777 37.500 0.00 0.00 0.00 2.41
4398 6048 5.652994 ATTGCGTATGGTGGTTTTACAAT 57.347 34.783 0.00 0.00 0.00 2.71
4399 6049 5.455056 TTGCGTATGGTGGTTTTACAATT 57.545 34.783 0.00 0.00 0.00 2.32
4400 6050 4.799678 TGCGTATGGTGGTTTTACAATTG 58.200 39.130 3.24 3.24 0.00 2.32
4401 6051 4.278669 TGCGTATGGTGGTTTTACAATTGT 59.721 37.500 16.68 16.68 0.00 2.71
4402 6052 5.472478 TGCGTATGGTGGTTTTACAATTGTA 59.528 36.000 14.35 14.35 0.00 2.41
4403 6053 6.025280 GCGTATGGTGGTTTTACAATTGTAG 58.975 40.000 17.36 3.80 0.00 2.74
4404 6054 6.128227 GCGTATGGTGGTTTTACAATTGTAGA 60.128 38.462 17.36 11.29 0.00 2.59
4405 6055 7.573469 GCGTATGGTGGTTTTACAATTGTAGAA 60.573 37.037 17.36 16.40 0.00 2.10
4406 6056 7.960738 CGTATGGTGGTTTTACAATTGTAGAAG 59.039 37.037 18.92 3.96 0.00 2.85
4407 6057 7.833285 ATGGTGGTTTTACAATTGTAGAAGT 57.167 32.000 18.92 0.00 0.00 3.01
4408 6058 7.648039 TGGTGGTTTTACAATTGTAGAAGTT 57.352 32.000 18.92 0.00 0.00 2.66
4409 6059 7.484975 TGGTGGTTTTACAATTGTAGAAGTTG 58.515 34.615 18.92 0.00 0.00 3.16
4410 6060 6.419710 GGTGGTTTTACAATTGTAGAAGTTGC 59.580 38.462 18.92 9.36 0.00 4.17
4411 6061 6.975772 GTGGTTTTACAATTGTAGAAGTTGCA 59.024 34.615 18.92 0.67 0.00 4.08
4412 6062 6.975772 TGGTTTTACAATTGTAGAAGTTGCAC 59.024 34.615 18.92 9.10 0.00 4.57
4413 6063 6.975772 GGTTTTACAATTGTAGAAGTTGCACA 59.024 34.615 18.92 0.00 0.00 4.57
4414 6064 7.651704 GGTTTTACAATTGTAGAAGTTGCACAT 59.348 33.333 18.92 0.00 0.00 3.21
4415 6065 8.479280 GTTTTACAATTGTAGAAGTTGCACATG 58.521 33.333 18.92 0.00 0.00 3.21
4416 6066 4.549458 ACAATTGTAGAAGTTGCACATGC 58.451 39.130 9.97 0.00 42.50 4.06
4417 6067 3.855689 ATTGTAGAAGTTGCACATGCC 57.144 42.857 0.49 0.00 41.18 4.40
4418 6068 2.566833 TGTAGAAGTTGCACATGCCT 57.433 45.000 0.49 0.00 41.18 4.75
4419 6069 2.862541 TGTAGAAGTTGCACATGCCTT 58.137 42.857 0.49 0.00 41.18 4.35
4420 6070 3.221771 TGTAGAAGTTGCACATGCCTTT 58.778 40.909 0.49 0.00 41.18 3.11
4421 6071 4.393834 TGTAGAAGTTGCACATGCCTTTA 58.606 39.130 0.49 0.00 41.18 1.85
4422 6072 3.923017 AGAAGTTGCACATGCCTTTAC 57.077 42.857 0.49 0.00 41.18 2.01
4423 6073 3.221771 AGAAGTTGCACATGCCTTTACA 58.778 40.909 0.49 0.00 41.18 2.41
4424 6074 3.254166 AGAAGTTGCACATGCCTTTACAG 59.746 43.478 0.49 0.00 41.18 2.74
4425 6075 2.586425 AGTTGCACATGCCTTTACAGT 58.414 42.857 0.49 0.00 41.18 3.55
4426 6076 2.294233 AGTTGCACATGCCTTTACAGTG 59.706 45.455 0.49 0.00 41.18 3.66
4427 6077 1.246649 TGCACATGCCTTTACAGTGG 58.753 50.000 0.49 0.00 41.18 4.00
4428 6078 1.247567 GCACATGCCTTTACAGTGGT 58.752 50.000 0.00 0.00 34.31 4.16
4429 6079 1.613437 GCACATGCCTTTACAGTGGTT 59.387 47.619 0.00 0.00 34.31 3.67
4430 6080 2.035832 GCACATGCCTTTACAGTGGTTT 59.964 45.455 0.00 0.00 34.31 3.27
4431 6081 3.492482 GCACATGCCTTTACAGTGGTTTT 60.492 43.478 0.00 0.00 34.31 2.43
4432 6082 4.050553 CACATGCCTTTACAGTGGTTTTG 58.949 43.478 0.00 0.00 0.00 2.44
4433 6083 2.880963 TGCCTTTACAGTGGTTTTGC 57.119 45.000 0.00 0.00 0.00 3.68
4434 6084 2.103373 TGCCTTTACAGTGGTTTTGCA 58.897 42.857 0.00 0.00 0.00 4.08
4435 6085 2.497675 TGCCTTTACAGTGGTTTTGCAA 59.502 40.909 0.00 0.00 0.00 4.08
4436 6086 3.133721 TGCCTTTACAGTGGTTTTGCAAT 59.866 39.130 0.00 0.00 0.00 3.56
4445 6095 7.245419 ACAGTGGTTTTGCAATTTTACAATC 57.755 32.000 0.00 0.00 0.00 2.67
4450 6100 9.862585 GTGGTTTTGCAATTTTACAATCTTAAG 57.137 29.630 0.00 0.00 0.00 1.85
4466 6116 9.933723 ACAATCTTAAGCAGCAATTTTAAAGAT 57.066 25.926 0.00 0.00 0.00 2.40
4468 6118 9.933723 AATCTTAAGCAGCAATTTTAAAGATGT 57.066 25.926 0.00 0.00 0.00 3.06
4469 6119 8.746922 TCTTAAGCAGCAATTTTAAAGATGTG 57.253 30.769 0.00 3.81 0.00 3.21
4482 6133 3.308438 AAGATGTGCATGCCTTTGTTC 57.692 42.857 16.68 3.78 0.00 3.18
4512 6163 7.141363 GCAAACATTAACAGTTCTCACAATCT 58.859 34.615 0.00 0.00 0.00 2.40
4517 6168 7.118390 ACATTAACAGTTCTCACAATCTAGCAC 59.882 37.037 0.00 0.00 0.00 4.40
4518 6169 4.607293 ACAGTTCTCACAATCTAGCACA 57.393 40.909 0.00 0.00 0.00 4.57
4520 6171 5.555017 ACAGTTCTCACAATCTAGCACATT 58.445 37.500 0.00 0.00 0.00 2.71
4521 6172 5.641209 ACAGTTCTCACAATCTAGCACATTC 59.359 40.000 0.00 0.00 0.00 2.67
4522 6173 5.640783 CAGTTCTCACAATCTAGCACATTCA 59.359 40.000 0.00 0.00 0.00 2.57
4523 6174 5.873712 AGTTCTCACAATCTAGCACATTCAG 59.126 40.000 0.00 0.00 0.00 3.02
4524 6175 5.411831 TCTCACAATCTAGCACATTCAGT 57.588 39.130 0.00 0.00 0.00 3.41
4540 6191 8.118893 CACATTCAGTGGTTTTACTTTCAAAG 57.881 34.615 0.00 0.00 44.69 2.77
4541 6192 7.973388 CACATTCAGTGGTTTTACTTTCAAAGA 59.027 33.333 3.49 0.00 44.69 2.52
4542 6193 8.527810 ACATTCAGTGGTTTTACTTTCAAAGAA 58.472 29.630 3.49 0.00 0.00 2.52
4543 6194 9.023967 CATTCAGTGGTTTTACTTTCAAAGAAG 57.976 33.333 3.49 0.00 0.00 2.85
4544 6195 7.696992 TCAGTGGTTTTACTTTCAAAGAAGT 57.303 32.000 3.49 0.00 42.27 3.01
4545 6196 8.795842 TCAGTGGTTTTACTTTCAAAGAAGTA 57.204 30.769 3.49 0.00 40.24 2.24
4546 6197 8.671028 TCAGTGGTTTTACTTTCAAAGAAGTAC 58.329 33.333 3.49 0.00 40.71 2.73
4547 6198 8.674607 CAGTGGTTTTACTTTCAAAGAAGTACT 58.325 33.333 3.49 0.00 40.71 2.73
4548 6199 9.239551 AGTGGTTTTACTTTCAAAGAAGTACTT 57.760 29.630 8.13 8.13 40.71 2.24
4611 6262 4.850859 TGGAACATTTAATCGCTACGTG 57.149 40.909 0.00 0.00 0.00 4.49
4612 6263 3.062909 TGGAACATTTAATCGCTACGTGC 59.937 43.478 0.00 0.00 38.57 5.34
4613 6264 3.308866 GGAACATTTAATCGCTACGTGCT 59.691 43.478 0.00 0.00 40.11 4.40
4614 6265 3.925688 ACATTTAATCGCTACGTGCTG 57.074 42.857 0.00 0.00 40.11 4.41
4615 6266 3.259064 ACATTTAATCGCTACGTGCTGT 58.741 40.909 0.00 0.00 40.11 4.40
4616 6267 3.682858 ACATTTAATCGCTACGTGCTGTT 59.317 39.130 0.00 0.78 40.11 3.16
4617 6268 4.153475 ACATTTAATCGCTACGTGCTGTTT 59.847 37.500 0.00 1.92 40.11 2.83
4618 6269 4.735662 TTTAATCGCTACGTGCTGTTTT 57.264 36.364 0.00 0.00 40.11 2.43
4619 6270 5.842619 TTTAATCGCTACGTGCTGTTTTA 57.157 34.783 0.00 0.00 40.11 1.52
4620 6271 6.411630 TTTAATCGCTACGTGCTGTTTTAT 57.588 33.333 0.00 0.00 40.11 1.40
4621 6272 7.522901 TTTAATCGCTACGTGCTGTTTTATA 57.477 32.000 0.00 0.00 40.11 0.98
4622 6273 7.703298 TTAATCGCTACGTGCTGTTTTATAT 57.297 32.000 0.00 0.00 40.11 0.86
4623 6274 5.576337 ATCGCTACGTGCTGTTTTATATG 57.424 39.130 0.00 0.00 40.11 1.78
4624 6275 3.244345 TCGCTACGTGCTGTTTTATATGC 59.756 43.478 0.00 0.00 40.11 3.14
4625 6276 3.000825 CGCTACGTGCTGTTTTATATGCA 59.999 43.478 0.00 0.00 40.11 3.96
4626 6277 4.518217 GCTACGTGCTGTTTTATATGCAG 58.482 43.478 0.00 0.00 38.95 4.41
4627 6278 4.552767 GCTACGTGCTGTTTTATATGCAGG 60.553 45.833 0.00 0.00 43.90 4.85
4628 6279 2.097466 ACGTGCTGTTTTATATGCAGGC 59.903 45.455 0.00 0.00 42.66 4.85
4629 6280 2.719798 GTGCTGTTTTATATGCAGGCG 58.280 47.619 0.00 0.00 36.03 5.52
4630 6281 2.354510 GTGCTGTTTTATATGCAGGCGA 59.645 45.455 0.00 0.00 36.03 5.54
4631 6282 3.003689 GTGCTGTTTTATATGCAGGCGAT 59.996 43.478 0.00 0.00 36.03 4.58
4632 6283 3.250762 TGCTGTTTTATATGCAGGCGATC 59.749 43.478 0.00 0.00 0.00 3.69
4633 6284 3.365364 GCTGTTTTATATGCAGGCGATCC 60.365 47.826 0.00 0.00 0.00 3.36
4634 6285 3.814625 TGTTTTATATGCAGGCGATCCA 58.185 40.909 0.00 0.00 33.74 3.41
4635 6286 4.397420 TGTTTTATATGCAGGCGATCCAT 58.603 39.130 0.00 0.00 33.74 3.41
4636 6287 4.826733 TGTTTTATATGCAGGCGATCCATT 59.173 37.500 0.00 0.00 33.74 3.16
4637 6288 5.301551 TGTTTTATATGCAGGCGATCCATTT 59.698 36.000 0.00 0.00 33.74 2.32
4638 6289 6.488344 TGTTTTATATGCAGGCGATCCATTTA 59.512 34.615 0.00 0.00 33.74 1.40
4639 6290 6.741992 TTTATATGCAGGCGATCCATTTAG 57.258 37.500 0.00 0.00 33.74 1.85
4640 6291 2.936919 ATGCAGGCGATCCATTTAGA 57.063 45.000 0.00 0.00 33.74 2.10
4641 6292 2.936919 TGCAGGCGATCCATTTAGAT 57.063 45.000 0.00 0.00 33.74 1.98
4642 6293 2.771089 TGCAGGCGATCCATTTAGATC 58.229 47.619 0.00 0.00 39.47 2.75
4643 6294 2.104622 TGCAGGCGATCCATTTAGATCA 59.895 45.455 0.00 0.00 42.40 2.92
4644 6295 3.244665 TGCAGGCGATCCATTTAGATCAT 60.245 43.478 0.00 0.00 42.40 2.45
4645 6296 3.126514 GCAGGCGATCCATTTAGATCATG 59.873 47.826 0.00 0.00 42.40 3.07
4646 6297 3.126514 CAGGCGATCCATTTAGATCATGC 59.873 47.826 0.00 0.00 42.40 4.06
4647 6298 3.076621 GGCGATCCATTTAGATCATGCA 58.923 45.455 0.00 0.00 42.40 3.96
4648 6299 3.693085 GGCGATCCATTTAGATCATGCAT 59.307 43.478 0.00 0.00 42.40 3.96
4649 6300 4.201891 GGCGATCCATTTAGATCATGCATC 60.202 45.833 0.00 0.00 42.40 3.91
4650 6301 4.393990 GCGATCCATTTAGATCATGCATCA 59.606 41.667 0.00 0.00 42.40 3.07
4651 6302 5.106436 GCGATCCATTTAGATCATGCATCAA 60.106 40.000 0.00 0.00 42.40 2.57
4652 6303 6.404403 GCGATCCATTTAGATCATGCATCAAT 60.404 38.462 0.00 0.00 42.40 2.57
4653 6304 7.201670 GCGATCCATTTAGATCATGCATCAATA 60.202 37.037 0.00 0.00 42.40 1.90
4654 6305 8.671028 CGATCCATTTAGATCATGCATCAATAA 58.329 33.333 0.00 0.00 42.40 1.40
4657 6308 9.304335 TCCATTTAGATCATGCATCAATAATGT 57.696 29.630 0.00 0.00 37.71 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.000780 AGCTTATTTGGTCTTTATCATGAACC 57.999 34.615 0.00 2.63 0.00 3.62
1 2 8.897752 AGAGCTTATTTGGTCTTTATCATGAAC 58.102 33.333 0.00 0.00 41.36 3.18
9 10 9.959721 ACATCTTTAGAGCTTATTTGGTCTTTA 57.040 29.630 1.61 0.00 43.46 1.85
10 11 8.734386 CACATCTTTAGAGCTTATTTGGTCTTT 58.266 33.333 1.61 0.00 43.46 2.52
11 12 7.885399 ACACATCTTTAGAGCTTATTTGGTCTT 59.115 33.333 1.61 0.00 43.46 3.01
12 13 7.335422 CACACATCTTTAGAGCTTATTTGGTCT 59.665 37.037 0.00 0.00 45.33 3.85
13 14 7.467623 CACACATCTTTAGAGCTTATTTGGTC 58.532 38.462 0.00 0.00 34.96 4.02
14 15 6.127897 GCACACATCTTTAGAGCTTATTTGGT 60.128 38.462 0.00 0.00 0.00 3.67
15 16 6.127925 TGCACACATCTTTAGAGCTTATTTGG 60.128 38.462 0.00 0.00 0.00 3.28
16 17 6.845302 TGCACACATCTTTAGAGCTTATTTG 58.155 36.000 0.00 0.00 0.00 2.32
17 18 7.452880 TTGCACACATCTTTAGAGCTTATTT 57.547 32.000 0.00 0.00 0.00 1.40
18 19 7.201767 GGATTGCACACATCTTTAGAGCTTATT 60.202 37.037 0.00 0.00 0.00 1.40
19 20 6.261826 GGATTGCACACATCTTTAGAGCTTAT 59.738 38.462 0.00 0.00 0.00 1.73
20 21 5.586243 GGATTGCACACATCTTTAGAGCTTA 59.414 40.000 0.00 0.00 0.00 3.09
21 22 4.397417 GGATTGCACACATCTTTAGAGCTT 59.603 41.667 0.00 0.00 0.00 3.74
22 23 3.944015 GGATTGCACACATCTTTAGAGCT 59.056 43.478 0.00 0.00 0.00 4.09
23 24 3.691118 TGGATTGCACACATCTTTAGAGC 59.309 43.478 0.00 0.00 0.00 4.09
24 25 4.940046 ACTGGATTGCACACATCTTTAGAG 59.060 41.667 0.00 0.00 0.00 2.43
25 26 4.910195 ACTGGATTGCACACATCTTTAGA 58.090 39.130 0.00 0.00 0.00 2.10
26 27 4.696877 TGACTGGATTGCACACATCTTTAG 59.303 41.667 0.00 0.00 0.00 1.85
27 28 4.650734 TGACTGGATTGCACACATCTTTA 58.349 39.130 0.00 0.00 0.00 1.85
28 29 3.489355 TGACTGGATTGCACACATCTTT 58.511 40.909 0.00 0.00 0.00 2.52
56 57 8.394121 GGATGTTTAGAGCTTAAATGTCTTGAG 58.606 37.037 0.00 0.00 0.00 3.02
60 61 7.398024 AGTGGATGTTTAGAGCTTAAATGTCT 58.602 34.615 0.00 0.00 0.00 3.41
61 62 7.334421 TGAGTGGATGTTTAGAGCTTAAATGTC 59.666 37.037 0.00 0.00 0.00 3.06
67 68 9.733556 TTTAATTGAGTGGATGTTTAGAGCTTA 57.266 29.630 0.00 0.00 0.00 3.09
77 78 5.476945 GGTTGGAGTTTAATTGAGTGGATGT 59.523 40.000 0.00 0.00 0.00 3.06
82 83 6.918022 GTCTTTGGTTGGAGTTTAATTGAGTG 59.082 38.462 0.00 0.00 0.00 3.51
83 84 6.605594 TGTCTTTGGTTGGAGTTTAATTGAGT 59.394 34.615 0.00 0.00 0.00 3.41
84 85 6.918022 GTGTCTTTGGTTGGAGTTTAATTGAG 59.082 38.462 0.00 0.00 0.00 3.02
85 86 6.378564 TGTGTCTTTGGTTGGAGTTTAATTGA 59.621 34.615 0.00 0.00 0.00 2.57
86 87 6.568869 TGTGTCTTTGGTTGGAGTTTAATTG 58.431 36.000 0.00 0.00 0.00 2.32
87 88 6.783708 TGTGTCTTTGGTTGGAGTTTAATT 57.216 33.333 0.00 0.00 0.00 1.40
89 90 6.783708 AATGTGTCTTTGGTTGGAGTTTAA 57.216 33.333 0.00 0.00 0.00 1.52
90 91 7.883391 TTAATGTGTCTTTGGTTGGAGTTTA 57.117 32.000 0.00 0.00 0.00 2.01
91 92 6.783708 TTAATGTGTCTTTGGTTGGAGTTT 57.216 33.333 0.00 0.00 0.00 2.66
92 93 6.976934 ATTAATGTGTCTTTGGTTGGAGTT 57.023 33.333 0.00 0.00 0.00 3.01
141 144 2.011947 TCCTTTGCAATCGAGCATCTG 58.988 47.619 0.00 0.00 45.19 2.90
143 146 2.012673 ACTCCTTTGCAATCGAGCATC 58.987 47.619 18.45 0.00 45.19 3.91
144 147 2.119801 ACTCCTTTGCAATCGAGCAT 57.880 45.000 18.45 3.01 45.19 3.79
151 154 2.076863 GTGCGAGTACTCCTTTGCAAT 58.923 47.619 20.29 0.00 36.83 3.56
155 158 0.038526 ACCGTGCGAGTACTCCTTTG 60.039 55.000 17.23 4.29 0.00 2.77
173 176 1.541233 CCTCCGAATGGGTGCATAGAC 60.541 57.143 0.00 0.00 37.00 2.59
181 184 0.338814 ACTACTCCCTCCGAATGGGT 59.661 55.000 7.12 0.00 44.84 4.51
193 196 3.114065 CGCCGTTGATAGAAACTACTCC 58.886 50.000 0.00 0.00 0.00 3.85
213 216 9.500864 GGTACTAGATTTAACAAAGTAGAGTCG 57.499 37.037 0.00 0.00 0.00 4.18
235 267 7.066043 TGGATTTCGGTGTATTATTTGTGGTAC 59.934 37.037 0.00 0.00 0.00 3.34
236 268 7.110810 TGGATTTCGGTGTATTATTTGTGGTA 58.889 34.615 0.00 0.00 0.00 3.25
237 269 5.946972 TGGATTTCGGTGTATTATTTGTGGT 59.053 36.000 0.00 0.00 0.00 4.16
238 270 6.443934 TGGATTTCGGTGTATTATTTGTGG 57.556 37.500 0.00 0.00 0.00 4.17
239 271 6.494842 CCTGGATTTCGGTGTATTATTTGTG 58.505 40.000 0.00 0.00 0.00 3.33
245 277 2.506231 TGGCCTGGATTTCGGTGTATTA 59.494 45.455 3.32 0.00 0.00 0.98
254 286 2.095461 GAACTTCCTGGCCTGGATTTC 58.905 52.381 29.96 27.22 35.83 2.17
293 325 1.133181 TGTCACATTCCTGGCCTGGA 61.133 55.000 26.46 26.46 0.00 3.86
294 326 0.679002 CTGTCACATTCCTGGCCTGG 60.679 60.000 22.36 22.36 0.00 4.45
295 327 0.325933 TCTGTCACATTCCTGGCCTG 59.674 55.000 3.32 2.54 0.00 4.85
296 328 1.067295 TTCTGTCACATTCCTGGCCT 58.933 50.000 3.32 0.00 0.00 5.19
297 329 2.019984 GATTCTGTCACATTCCTGGCC 58.980 52.381 0.00 0.00 0.00 5.36
298 330 2.715046 TGATTCTGTCACATTCCTGGC 58.285 47.619 0.00 0.00 0.00 4.85
299 331 7.578310 ATTATTGATTCTGTCACATTCCTGG 57.422 36.000 0.00 0.00 36.32 4.45
300 332 9.512435 GAAATTATTGATTCTGTCACATTCCTG 57.488 33.333 0.00 0.00 36.32 3.86
301 333 8.689972 GGAAATTATTGATTCTGTCACATTCCT 58.310 33.333 0.00 0.00 36.32 3.36
302 334 8.469200 TGGAAATTATTGATTCTGTCACATTCC 58.531 33.333 0.00 0.00 36.32 3.01
303 335 9.512435 CTGGAAATTATTGATTCTGTCACATTC 57.488 33.333 0.00 0.00 36.32 2.67
304 336 9.246670 TCTGGAAATTATTGATTCTGTCACATT 57.753 29.630 0.00 0.00 36.32 2.71
305 337 8.812513 TCTGGAAATTATTGATTCTGTCACAT 57.187 30.769 0.00 0.00 36.32 3.21
316 348 5.391523 CGCCTTCGTTTCTGGAAATTATTGA 60.392 40.000 0.00 0.00 32.36 2.57
334 366 3.179048 GTGCCATTATTTTGTCGCCTTC 58.821 45.455 0.00 0.00 0.00 3.46
367 399 2.349886 CACCTCGCTCTGCTATGTTTTC 59.650 50.000 0.00 0.00 0.00 2.29
368 400 2.028112 TCACCTCGCTCTGCTATGTTTT 60.028 45.455 0.00 0.00 0.00 2.43
384 418 0.685097 ATTGCGTGTACACCTCACCT 59.315 50.000 20.11 6.02 32.86 4.00
404 438 3.493699 CCGTCCCCTTCTATTATTGCGAA 60.494 47.826 0.00 0.00 0.00 4.70
405 439 2.036733 CCGTCCCCTTCTATTATTGCGA 59.963 50.000 0.00 0.00 0.00 5.10
406 440 2.036733 TCCGTCCCCTTCTATTATTGCG 59.963 50.000 0.00 0.00 0.00 4.85
407 441 3.764237 TCCGTCCCCTTCTATTATTGC 57.236 47.619 0.00 0.00 0.00 3.56
408 442 4.065789 GCTTCCGTCCCCTTCTATTATTG 58.934 47.826 0.00 0.00 0.00 1.90
409 443 3.714798 TGCTTCCGTCCCCTTCTATTATT 59.285 43.478 0.00 0.00 0.00 1.40
410 444 3.314693 TGCTTCCGTCCCCTTCTATTAT 58.685 45.455 0.00 0.00 0.00 1.28
411 445 2.698797 CTGCTTCCGTCCCCTTCTATTA 59.301 50.000 0.00 0.00 0.00 0.98
531 566 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
532 567 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
533 568 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
534 569 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
535 570 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
536 571 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
537 572 3.885901 TCGAGAGAGAGAGAGAGAGAGAG 59.114 52.174 0.00 0.00 34.84 3.20
538 573 3.632604 GTCGAGAGAGAGAGAGAGAGAGA 59.367 52.174 0.00 0.00 43.49 3.10
539 574 3.243569 GGTCGAGAGAGAGAGAGAGAGAG 60.244 56.522 0.00 0.00 43.49 3.20
540 575 2.693591 GGTCGAGAGAGAGAGAGAGAGA 59.306 54.545 0.00 0.00 43.49 3.10
541 576 2.695666 AGGTCGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 43.49 3.20
542 577 2.747177 AGGTCGAGAGAGAGAGAGAGA 58.253 52.381 0.00 0.00 43.49 3.10
543 578 3.543680 AAGGTCGAGAGAGAGAGAGAG 57.456 52.381 0.00 0.00 43.49 3.20
544 579 3.370103 GGAAAGGTCGAGAGAGAGAGAGA 60.370 52.174 0.00 0.00 43.49 3.10
545 580 2.943033 GGAAAGGTCGAGAGAGAGAGAG 59.057 54.545 0.00 0.00 43.49 3.20
546 581 2.574369 AGGAAAGGTCGAGAGAGAGAGA 59.426 50.000 0.00 0.00 43.49 3.10
547 582 2.943033 GAGGAAAGGTCGAGAGAGAGAG 59.057 54.545 0.00 0.00 43.49 3.20
548 583 2.574369 AGAGGAAAGGTCGAGAGAGAGA 59.426 50.000 0.00 0.00 43.49 3.10
549 584 2.943033 GAGAGGAAAGGTCGAGAGAGAG 59.057 54.545 0.00 0.00 43.49 3.20
550 585 2.993937 GAGAGGAAAGGTCGAGAGAGA 58.006 52.381 0.00 0.00 43.49 3.10
1236 1388 1.576421 GCGAGAAAACCAGCCACAG 59.424 57.895 0.00 0.00 0.00 3.66
1237 1389 2.250939 CGCGAGAAAACCAGCCACA 61.251 57.895 0.00 0.00 0.00 4.17
1305 1457 0.927029 TCTCCTCATCTCCCTCGGAA 59.073 55.000 0.00 0.00 0.00 4.30
1307 1459 0.476338 TCTCTCCTCATCTCCCTCGG 59.524 60.000 0.00 0.00 0.00 4.63
1308 1460 2.436417 GATCTCTCCTCATCTCCCTCG 58.564 57.143 0.00 0.00 0.00 4.63
1317 1469 1.213182 ACAGCTACGGATCTCTCCTCA 59.787 52.381 0.00 0.00 39.65 3.86
1384 1536 2.512515 GACGCCCAGACCATCAGC 60.513 66.667 0.00 0.00 0.00 4.26
1412 1564 2.584608 CCCCAGACGAATTCGCCT 59.415 61.111 27.03 19.51 44.43 5.52
1559 1720 3.764466 CGGCAGGACTTCTCGCCT 61.764 66.667 0.00 0.00 37.46 5.52
1596 1757 5.173664 CAGCAGCCAAATCAGATCGATATA 58.826 41.667 0.00 0.00 32.51 0.86
1710 1879 2.242043 CCATGGATTTATGTCTGCCCC 58.758 52.381 5.56 0.00 0.00 5.80
1713 1882 3.319972 ACATGCCATGGATTTATGTCTGC 59.680 43.478 18.40 0.00 33.60 4.26
1714 1883 5.117355 GACATGCCATGGATTTATGTCTG 57.883 43.478 27.10 11.86 42.51 3.51
1716 1885 6.294176 GGTTAGACATGCCATGGATTTATGTC 60.294 42.308 27.11 27.11 44.81 3.06
1717 1886 5.536161 GGTTAGACATGCCATGGATTTATGT 59.464 40.000 18.40 18.36 34.91 2.29
1718 1887 5.535783 TGGTTAGACATGCCATGGATTTATG 59.464 40.000 18.40 15.36 33.60 1.90
2374 2545 9.874205 ATTTTGGTCCACAATAGTTTATTGATG 57.126 29.630 13.99 9.01 46.52 3.07
2430 2623 4.997565 TGCAGAAAAGAAACACAAGGAAG 58.002 39.130 0.00 0.00 0.00 3.46
2835 3029 4.081752 GCTTCCTCAATTCTCTGTCTCTCA 60.082 45.833 0.00 0.00 0.00 3.27
3009 3204 6.251376 GCTTTAGAAGTTTATCACCAAATGCG 59.749 38.462 0.00 0.00 0.00 4.73
3156 3360 6.743110 TGCATGAAAAGTTACATTGCACTAA 58.257 32.000 0.00 0.00 31.43 2.24
3157 3361 6.324561 TGCATGAAAAGTTACATTGCACTA 57.675 33.333 0.00 0.00 31.43 2.74
3227 3431 8.230306 AGCCTTGATCATCCCTTTCTTAATAAT 58.770 33.333 0.00 0.00 0.00 1.28
3272 3476 8.059461 ACCTCCTCCTGTAAATAAATAAAAGGG 58.941 37.037 0.00 0.00 0.00 3.95
3443 3659 1.615392 GCAACAGCTTCCTGGAAATGT 59.385 47.619 17.01 17.01 43.53 2.71
3444 3660 1.067354 GGCAACAGCTTCCTGGAAATG 60.067 52.381 10.86 13.93 43.53 2.32
3477 3693 2.468831 CGCTTGCTCAGGATCTTCTAC 58.531 52.381 0.00 0.00 0.00 2.59
3593 3809 2.044352 TCGCTCGGTCCATCTCCA 60.044 61.111 0.00 0.00 0.00 3.86
3609 3825 1.002011 GGTCCTTGGCAACCTCCTC 60.002 63.158 0.00 0.00 32.54 3.71
3610 3826 1.360393 TTGGTCCTTGGCAACCTCCT 61.360 55.000 8.23 0.00 36.47 3.69
3611 3827 0.469144 TTTGGTCCTTGGCAACCTCC 60.469 55.000 8.23 5.80 36.47 4.30
3612 3828 0.961753 CTTTGGTCCTTGGCAACCTC 59.038 55.000 8.23 0.00 36.47 3.85
3613 3829 0.261696 ACTTTGGTCCTTGGCAACCT 59.738 50.000 8.23 0.00 36.47 3.50
3614 3830 0.389025 CACTTTGGTCCTTGGCAACC 59.611 55.000 0.00 0.00 36.03 3.77
3615 3831 1.338020 CTCACTTTGGTCCTTGGCAAC 59.662 52.381 0.00 0.00 0.00 4.17
3616 3832 1.691196 CTCACTTTGGTCCTTGGCAA 58.309 50.000 0.00 0.00 0.00 4.52
3617 3833 0.178992 CCTCACTTTGGTCCTTGGCA 60.179 55.000 0.00 0.00 0.00 4.92
3618 3834 0.110486 TCCTCACTTTGGTCCTTGGC 59.890 55.000 0.00 0.00 0.00 4.52
3619 3835 1.271597 CCTCCTCACTTTGGTCCTTGG 60.272 57.143 0.00 0.00 0.00 3.61
3620 3836 1.421646 ACCTCCTCACTTTGGTCCTTG 59.578 52.381 0.00 0.00 0.00 3.61
3621 3837 1.700186 GACCTCCTCACTTTGGTCCTT 59.300 52.381 0.00 0.00 42.11 3.36
3622 3838 1.353091 GACCTCCTCACTTTGGTCCT 58.647 55.000 0.00 0.00 42.11 3.85
3623 3839 0.037232 CGACCTCCTCACTTTGGTCC 60.037 60.000 0.00 0.00 44.29 4.46
3624 3840 0.670854 GCGACCTCCTCACTTTGGTC 60.671 60.000 0.00 0.00 43.86 4.02
3625 3841 1.371558 GCGACCTCCTCACTTTGGT 59.628 57.895 0.00 0.00 35.23 3.67
3626 3842 1.376037 GGCGACCTCCTCACTTTGG 60.376 63.158 0.00 0.00 0.00 3.28
3627 3843 0.250295 TTGGCGACCTCCTCACTTTG 60.250 55.000 0.00 0.00 0.00 2.77
3628 3844 0.035458 CTTGGCGACCTCCTCACTTT 59.965 55.000 0.00 0.00 0.00 2.66
3629 3845 1.674057 CTTGGCGACCTCCTCACTT 59.326 57.895 0.00 0.00 0.00 3.16
3709 5222 2.632377 CCGCCACATGACATCTACTTT 58.368 47.619 0.00 0.00 0.00 2.66
3752 5268 2.262423 ACTCAGGCCAAGTCAGTTTC 57.738 50.000 5.01 0.00 0.00 2.78
4010 5544 4.200838 TGATGCACGGTTCTGAAATCTA 57.799 40.909 0.00 0.00 0.00 1.98
4014 5548 4.582701 AAATTGATGCACGGTTCTGAAA 57.417 36.364 0.00 0.00 0.00 2.69
4044 5580 5.743636 TTATTTTGGCTCTGCAAGGAAAT 57.256 34.783 0.00 0.00 0.00 2.17
4064 5609 8.856103 CATTTCAAAGAGGGGTAAAAGAGTTTA 58.144 33.333 0.00 0.00 0.00 2.01
4076 5622 1.767759 ATCGGCATTTCAAAGAGGGG 58.232 50.000 0.00 0.00 0.00 4.79
4086 5632 4.022068 CCAAATGTGGCTATATCGGCATTT 60.022 41.667 6.77 2.23 41.72 2.32
4230 5875 6.455513 GGCGCATATTTTTCTTTCAAATCCAC 60.456 38.462 10.83 0.00 0.00 4.02
4236 5881 4.219507 TCCAGGCGCATATTTTTCTTTCAA 59.780 37.500 10.83 0.00 0.00 2.69
4243 5888 4.470334 AACAATCCAGGCGCATATTTTT 57.530 36.364 10.83 0.00 0.00 1.94
4248 5893 3.376859 CACTAAAACAATCCAGGCGCATA 59.623 43.478 10.83 0.00 0.00 3.14
4280 5930 9.777297 TCGTCTTCATCATCCATAATTGATAAA 57.223 29.630 0.00 0.00 31.50 1.40
4281 5931 9.428097 CTCGTCTTCATCATCCATAATTGATAA 57.572 33.333 0.00 0.00 31.50 1.75
4282 5932 8.588472 ACTCGTCTTCATCATCCATAATTGATA 58.412 33.333 0.00 0.00 31.50 2.15
4283 5933 7.448420 ACTCGTCTTCATCATCCATAATTGAT 58.552 34.615 0.00 0.00 32.87 2.57
4284 5934 6.820335 ACTCGTCTTCATCATCCATAATTGA 58.180 36.000 0.00 0.00 0.00 2.57
4285 5935 6.146837 GGACTCGTCTTCATCATCCATAATTG 59.853 42.308 0.00 0.00 0.00 2.32
4286 5936 6.042552 AGGACTCGTCTTCATCATCCATAATT 59.957 38.462 0.00 0.00 0.00 1.40
4287 5937 5.541868 AGGACTCGTCTTCATCATCCATAAT 59.458 40.000 0.00 0.00 0.00 1.28
4288 5938 4.895889 AGGACTCGTCTTCATCATCCATAA 59.104 41.667 0.00 0.00 0.00 1.90
4289 5939 4.474394 AGGACTCGTCTTCATCATCCATA 58.526 43.478 0.00 0.00 0.00 2.74
4290 5940 3.303938 AGGACTCGTCTTCATCATCCAT 58.696 45.455 0.00 0.00 0.00 3.41
4291 5941 2.690497 GAGGACTCGTCTTCATCATCCA 59.310 50.000 4.53 0.00 35.96 3.41
4292 5942 2.690497 TGAGGACTCGTCTTCATCATCC 59.310 50.000 7.66 0.00 40.18 3.51
4293 5943 4.377839 TTGAGGACTCGTCTTCATCATC 57.622 45.455 11.85 0.00 43.68 2.92
4294 5944 4.021104 TGTTTGAGGACTCGTCTTCATCAT 60.021 41.667 11.85 0.00 43.68 2.45
4295 5945 3.320826 TGTTTGAGGACTCGTCTTCATCA 59.679 43.478 11.85 11.23 43.68 3.07
4296 5946 3.914312 TGTTTGAGGACTCGTCTTCATC 58.086 45.455 11.85 9.28 43.68 2.92
4297 5947 4.248859 CATGTTTGAGGACTCGTCTTCAT 58.751 43.478 11.85 1.89 43.68 2.57
4316 5966 3.011818 TGTAAGCAGCTGAACATCCATG 58.988 45.455 20.43 0.00 0.00 3.66
4338 5988 2.603110 CGTGCGAGCTGCTTATCTTTAA 59.397 45.455 2.53 0.00 46.63 1.52
4340 5990 1.002366 CGTGCGAGCTGCTTATCTTT 58.998 50.000 2.53 0.00 46.63 2.52
4341 5991 0.807667 CCGTGCGAGCTGCTTATCTT 60.808 55.000 2.53 0.00 46.63 2.40
4342 5992 1.227089 CCGTGCGAGCTGCTTATCT 60.227 57.895 2.53 0.00 46.63 1.98
4344 5994 0.249073 CTACCGTGCGAGCTGCTTAT 60.249 55.000 2.53 0.00 46.63 1.73
4345 5995 1.138883 CTACCGTGCGAGCTGCTTA 59.861 57.895 2.53 0.00 46.63 3.09
4346 5996 1.592400 TACTACCGTGCGAGCTGCTT 61.592 55.000 2.53 0.00 46.63 3.91
4348 5998 1.872679 GTACTACCGTGCGAGCTGC 60.873 63.158 0.00 0.00 46.70 5.25
4349 5999 1.226603 GGTACTACCGTGCGAGCTG 60.227 63.158 0.00 0.00 0.00 4.24
4350 6000 1.035932 ATGGTACTACCGTGCGAGCT 61.036 55.000 0.00 0.00 42.58 4.09
4351 6001 0.594284 GATGGTACTACCGTGCGAGC 60.594 60.000 4.55 0.00 42.58 5.03
4352 6002 0.030369 GGATGGTACTACCGTGCGAG 59.970 60.000 4.55 0.00 42.58 5.03
4353 6003 2.109431 GGATGGTACTACCGTGCGA 58.891 57.895 4.55 0.00 42.58 5.10
4355 6005 0.529992 GCTGGATGGTACTACCGTGC 60.530 60.000 11.21 11.21 44.77 5.34
4356 6006 0.821517 TGCTGGATGGTACTACCGTG 59.178 55.000 4.55 0.00 42.58 4.94
4357 6007 1.563924 TTGCTGGATGGTACTACCGT 58.436 50.000 0.00 0.00 42.58 4.83
4358 6008 2.872245 CAATTGCTGGATGGTACTACCG 59.128 50.000 0.62 0.00 42.58 4.02
4359 6009 2.618709 GCAATTGCTGGATGGTACTACC 59.381 50.000 23.21 0.00 37.08 3.18
4360 6010 2.287915 CGCAATTGCTGGATGGTACTAC 59.712 50.000 26.86 0.00 39.32 2.73
4361 6011 2.093181 ACGCAATTGCTGGATGGTACTA 60.093 45.455 26.86 0.00 39.32 1.82
4362 6012 1.340017 ACGCAATTGCTGGATGGTACT 60.340 47.619 26.86 1.23 39.32 2.73
4363 6013 1.094785 ACGCAATTGCTGGATGGTAC 58.905 50.000 26.86 0.00 39.32 3.34
4364 6014 2.700722 TACGCAATTGCTGGATGGTA 57.299 45.000 26.86 17.12 39.32 3.25
4365 6015 1.677576 CATACGCAATTGCTGGATGGT 59.322 47.619 26.47 19.54 39.32 3.55
4366 6016 1.001048 CCATACGCAATTGCTGGATGG 60.001 52.381 32.77 32.77 43.77 3.51
4367 6017 1.677576 ACCATACGCAATTGCTGGATG 59.322 47.619 32.48 29.48 37.34 3.51
4368 6018 1.677576 CACCATACGCAATTGCTGGAT 59.322 47.619 32.48 22.96 37.34 3.41
4369 6019 1.093972 CACCATACGCAATTGCTGGA 58.906 50.000 32.48 21.96 37.34 3.86
4370 6020 0.101040 CCACCATACGCAATTGCTGG 59.899 55.000 27.06 27.06 39.12 4.85
4371 6021 0.810648 ACCACCATACGCAATTGCTG 59.189 50.000 26.86 21.40 39.32 4.41
4372 6022 1.544724 AACCACCATACGCAATTGCT 58.455 45.000 26.86 16.41 39.32 3.91
4373 6023 2.362169 AAACCACCATACGCAATTGC 57.638 45.000 20.76 20.76 37.78 3.56
4374 6024 4.799678 TGTAAAACCACCATACGCAATTG 58.200 39.130 0.00 0.00 0.00 2.32
4375 6025 5.455056 TTGTAAAACCACCATACGCAATT 57.545 34.783 0.00 0.00 0.00 2.32
4376 6026 5.652994 ATTGTAAAACCACCATACGCAAT 57.347 34.783 0.00 0.00 0.00 3.56
4377 6027 5.221263 ACAATTGTAAAACCACCATACGCAA 60.221 36.000 9.97 0.00 0.00 4.85
4378 6028 4.278669 ACAATTGTAAAACCACCATACGCA 59.721 37.500 9.97 0.00 0.00 5.24
4379 6029 4.800784 ACAATTGTAAAACCACCATACGC 58.199 39.130 9.97 0.00 0.00 4.42
4380 6030 7.367159 TCTACAATTGTAAAACCACCATACG 57.633 36.000 18.55 3.50 0.00 3.06
4381 6031 8.789762 ACTTCTACAATTGTAAAACCACCATAC 58.210 33.333 18.55 0.00 0.00 2.39
4382 6032 8.927675 ACTTCTACAATTGTAAAACCACCATA 57.072 30.769 18.55 0.00 0.00 2.74
4383 6033 7.833285 ACTTCTACAATTGTAAAACCACCAT 57.167 32.000 18.55 0.00 0.00 3.55
4384 6034 7.484975 CAACTTCTACAATTGTAAAACCACCA 58.515 34.615 18.55 0.00 0.00 4.17
4385 6035 6.419710 GCAACTTCTACAATTGTAAAACCACC 59.580 38.462 18.55 3.37 0.00 4.61
4386 6036 6.975772 TGCAACTTCTACAATTGTAAAACCAC 59.024 34.615 18.55 7.27 0.00 4.16
4387 6037 6.975772 GTGCAACTTCTACAATTGTAAAACCA 59.024 34.615 18.55 7.53 0.00 3.67
4388 6038 6.975772 TGTGCAACTTCTACAATTGTAAAACC 59.024 34.615 18.55 5.37 38.04 3.27
4389 6039 7.979115 TGTGCAACTTCTACAATTGTAAAAC 57.021 32.000 18.55 10.67 38.04 2.43
4390 6040 7.168972 GCATGTGCAACTTCTACAATTGTAAAA 59.831 33.333 18.55 11.53 41.59 1.52
4391 6041 6.640499 GCATGTGCAACTTCTACAATTGTAAA 59.360 34.615 18.55 13.89 41.59 2.01
4392 6042 6.148948 GCATGTGCAACTTCTACAATTGTAA 58.851 36.000 18.55 6.68 41.59 2.41
4393 6043 5.335583 GGCATGTGCAACTTCTACAATTGTA 60.336 40.000 17.16 17.16 44.36 2.41
4394 6044 4.549458 GCATGTGCAACTTCTACAATTGT 58.451 39.130 16.68 16.68 41.59 2.71
4395 6045 3.922240 GGCATGTGCAACTTCTACAATTG 59.078 43.478 3.24 3.24 44.36 2.32
4396 6046 3.828451 AGGCATGTGCAACTTCTACAATT 59.172 39.130 7.36 0.00 44.36 2.32
4397 6047 3.424703 AGGCATGTGCAACTTCTACAAT 58.575 40.909 7.36 0.00 44.36 2.71
4398 6048 2.862541 AGGCATGTGCAACTTCTACAA 58.137 42.857 7.36 0.00 44.36 2.41
4399 6049 2.566833 AGGCATGTGCAACTTCTACA 57.433 45.000 7.36 0.00 44.36 2.74
4400 6050 3.923017 AAAGGCATGTGCAACTTCTAC 57.077 42.857 7.36 0.00 44.36 2.59
4401 6051 4.393834 TGTAAAGGCATGTGCAACTTCTA 58.606 39.130 7.36 0.00 44.36 2.10
4402 6052 3.221771 TGTAAAGGCATGTGCAACTTCT 58.778 40.909 7.36 0.00 44.36 2.85
4403 6053 3.004734 ACTGTAAAGGCATGTGCAACTTC 59.995 43.478 7.36 0.00 44.36 3.01
4404 6054 2.958355 ACTGTAAAGGCATGTGCAACTT 59.042 40.909 7.36 0.00 44.36 2.66
4405 6055 2.294233 CACTGTAAAGGCATGTGCAACT 59.706 45.455 7.36 0.00 44.36 3.16
4406 6056 2.607771 CCACTGTAAAGGCATGTGCAAC 60.608 50.000 7.36 0.48 44.36 4.17
4407 6057 1.612950 CCACTGTAAAGGCATGTGCAA 59.387 47.619 7.36 0.00 44.36 4.08
4408 6058 1.246649 CCACTGTAAAGGCATGTGCA 58.753 50.000 7.36 0.00 44.36 4.57
4409 6059 1.247567 ACCACTGTAAAGGCATGTGC 58.752 50.000 0.00 0.00 41.14 4.57
4410 6060 4.050553 CAAAACCACTGTAAAGGCATGTG 58.949 43.478 0.00 0.00 0.00 3.21
4411 6061 3.492482 GCAAAACCACTGTAAAGGCATGT 60.492 43.478 0.00 0.00 0.00 3.21
4412 6062 3.059166 GCAAAACCACTGTAAAGGCATG 58.941 45.455 0.00 0.00 0.00 4.06
4413 6063 2.697751 TGCAAAACCACTGTAAAGGCAT 59.302 40.909 0.00 0.00 0.00 4.40
4414 6064 2.103373 TGCAAAACCACTGTAAAGGCA 58.897 42.857 0.00 0.00 0.00 4.75
4415 6065 2.880963 TGCAAAACCACTGTAAAGGC 57.119 45.000 0.00 0.00 0.00 4.35
4416 6066 6.676237 AAAATTGCAAAACCACTGTAAAGG 57.324 33.333 1.71 0.00 0.00 3.11
4417 6067 8.190888 TGTAAAATTGCAAAACCACTGTAAAG 57.809 30.769 1.71 0.00 0.00 1.85
4418 6068 8.547967 TTGTAAAATTGCAAAACCACTGTAAA 57.452 26.923 1.71 0.00 29.82 2.01
4419 6069 8.723942 ATTGTAAAATTGCAAAACCACTGTAA 57.276 26.923 1.71 0.00 36.40 2.41
4420 6070 8.200792 AGATTGTAAAATTGCAAAACCACTGTA 58.799 29.630 1.71 0.00 36.40 2.74
4421 6071 7.047271 AGATTGTAAAATTGCAAAACCACTGT 58.953 30.769 1.71 0.00 36.40 3.55
4422 6072 7.481275 AGATTGTAAAATTGCAAAACCACTG 57.519 32.000 1.71 0.00 36.40 3.66
4423 6073 9.606631 TTAAGATTGTAAAATTGCAAAACCACT 57.393 25.926 1.71 0.00 36.40 4.00
4424 6074 9.862585 CTTAAGATTGTAAAATTGCAAAACCAC 57.137 29.630 1.71 0.23 36.40 4.16
4425 6075 8.555361 GCTTAAGATTGTAAAATTGCAAAACCA 58.445 29.630 6.67 0.00 36.40 3.67
4426 6076 8.555361 TGCTTAAGATTGTAAAATTGCAAAACC 58.445 29.630 6.67 0.00 36.40 3.27
4427 6077 9.584839 CTGCTTAAGATTGTAAAATTGCAAAAC 57.415 29.630 6.67 0.24 36.40 2.43
4428 6078 8.281893 GCTGCTTAAGATTGTAAAATTGCAAAA 58.718 29.630 6.67 0.00 36.40 2.44
4429 6079 7.440556 TGCTGCTTAAGATTGTAAAATTGCAAA 59.559 29.630 6.67 0.00 36.40 3.68
4430 6080 6.927936 TGCTGCTTAAGATTGTAAAATTGCAA 59.072 30.769 6.67 0.00 37.19 4.08
4431 6081 6.453943 TGCTGCTTAAGATTGTAAAATTGCA 58.546 32.000 6.67 0.00 0.00 4.08
4432 6082 6.949578 TGCTGCTTAAGATTGTAAAATTGC 57.050 33.333 6.67 0.00 0.00 3.56
4445 6095 7.116662 TGCACATCTTTAAAATTGCTGCTTAAG 59.883 33.333 0.00 0.00 0.00 1.85
4450 6100 5.556470 CATGCACATCTTTAAAATTGCTGC 58.444 37.500 0.00 0.00 0.00 5.25
4461 6111 3.069872 TGAACAAAGGCATGCACATCTTT 59.930 39.130 21.36 16.03 0.00 2.52
4464 6114 2.029649 ACTGAACAAAGGCATGCACATC 60.030 45.455 21.36 8.88 0.00 3.06
4465 6115 1.965643 ACTGAACAAAGGCATGCACAT 59.034 42.857 21.36 1.15 0.00 3.21
4466 6116 1.401761 ACTGAACAAAGGCATGCACA 58.598 45.000 21.36 6.50 0.00 4.57
4467 6117 2.129607 CAACTGAACAAAGGCATGCAC 58.870 47.619 21.36 9.10 0.00 4.57
4468 6118 1.538634 GCAACTGAACAAAGGCATGCA 60.539 47.619 21.36 0.00 33.00 3.96
4469 6119 1.142474 GCAACTGAACAAAGGCATGC 58.858 50.000 9.90 9.90 0.00 4.06
4482 6133 6.197096 GTGAGAACTGTTAATGTTTGCAACTG 59.803 38.462 0.00 0.00 0.00 3.16
4512 6163 6.544197 TGAAAGTAAAACCACTGAATGTGCTA 59.456 34.615 0.00 0.00 44.92 3.49
4517 6168 8.925161 TTCTTTGAAAGTAAAACCACTGAATG 57.075 30.769 4.68 0.00 0.00 2.67
4518 6169 8.749354 ACTTCTTTGAAAGTAAAACCACTGAAT 58.251 29.630 4.68 0.00 37.71 2.57
4520 6171 7.696992 ACTTCTTTGAAAGTAAAACCACTGA 57.303 32.000 4.68 0.00 37.71 3.41
4521 6172 8.674607 AGTACTTCTTTGAAAGTAAAACCACTG 58.325 33.333 4.68 0.00 41.94 3.66
4522 6173 8.803397 AGTACTTCTTTGAAAGTAAAACCACT 57.197 30.769 4.68 0.00 41.94 4.00
4531 6182 9.614792 ACTTCATGTAAGTACTTCTTTGAAAGT 57.385 29.630 12.39 12.55 46.85 2.66
4580 6231 9.921637 AGCGATTAAATGTTCCATTTAGAAAAA 57.078 25.926 8.82 0.00 0.00 1.94
4582 6233 9.997482 GTAGCGATTAAATGTTCCATTTAGAAA 57.003 29.630 8.82 0.00 0.00 2.52
4583 6234 8.332464 CGTAGCGATTAAATGTTCCATTTAGAA 58.668 33.333 8.82 0.20 0.00 2.10
4584 6235 7.493320 ACGTAGCGATTAAATGTTCCATTTAGA 59.507 33.333 8.82 3.25 0.00 2.10
4585 6236 7.582679 CACGTAGCGATTAAATGTTCCATTTAG 59.417 37.037 8.82 1.60 0.00 1.85
4586 6237 7.403421 CACGTAGCGATTAAATGTTCCATTTA 58.597 34.615 5.53 5.53 0.00 1.40
4587 6238 6.255215 CACGTAGCGATTAAATGTTCCATTT 58.745 36.000 7.30 7.30 0.00 2.32
4588 6239 5.729454 GCACGTAGCGATTAAATGTTCCATT 60.729 40.000 0.00 0.00 0.00 3.16
4589 6240 4.260620 GCACGTAGCGATTAAATGTTCCAT 60.261 41.667 0.00 0.00 0.00 3.41
4590 6241 3.062909 GCACGTAGCGATTAAATGTTCCA 59.937 43.478 0.00 0.00 0.00 3.53
4591 6242 3.604392 GCACGTAGCGATTAAATGTTCC 58.396 45.455 0.00 0.00 0.00 3.62
4604 6255 4.518217 CTGCATATAAAACAGCACGTAGC 58.482 43.478 0.00 0.00 46.19 3.58
4605 6256 4.552767 GCCTGCATATAAAACAGCACGTAG 60.553 45.833 0.00 0.00 32.87 3.51
4606 6257 3.311322 GCCTGCATATAAAACAGCACGTA 59.689 43.478 0.00 0.00 32.87 3.57
4607 6258 2.097466 GCCTGCATATAAAACAGCACGT 59.903 45.455 0.00 0.00 32.87 4.49
4608 6259 2.719798 GCCTGCATATAAAACAGCACG 58.280 47.619 0.00 0.00 32.87 5.34
4609 6260 2.354510 TCGCCTGCATATAAAACAGCAC 59.645 45.455 0.00 0.00 32.87 4.40
4610 6261 2.637947 TCGCCTGCATATAAAACAGCA 58.362 42.857 0.00 0.00 35.43 4.41
4611 6262 3.365364 GGATCGCCTGCATATAAAACAGC 60.365 47.826 0.00 0.00 0.00 4.40
4612 6263 3.814842 TGGATCGCCTGCATATAAAACAG 59.185 43.478 0.00 0.00 34.31 3.16
4613 6264 3.814625 TGGATCGCCTGCATATAAAACA 58.185 40.909 0.00 0.00 34.31 2.83
4614 6265 5.376854 AATGGATCGCCTGCATATAAAAC 57.623 39.130 0.00 0.00 34.37 2.43
4615 6266 6.939730 TCTAAATGGATCGCCTGCATATAAAA 59.060 34.615 0.00 0.00 34.37 1.52
4616 6267 6.472016 TCTAAATGGATCGCCTGCATATAAA 58.528 36.000 0.00 0.00 34.37 1.40
4617 6268 6.048732 TCTAAATGGATCGCCTGCATATAA 57.951 37.500 0.00 0.00 34.37 0.98
4618 6269 5.675684 TCTAAATGGATCGCCTGCATATA 57.324 39.130 0.00 0.00 34.37 0.86
4619 6270 4.558226 TCTAAATGGATCGCCTGCATAT 57.442 40.909 0.00 0.00 34.37 1.78
4620 6271 4.020307 TGATCTAAATGGATCGCCTGCATA 60.020 41.667 0.00 0.00 43.46 3.14
4621 6272 2.936919 TCTAAATGGATCGCCTGCAT 57.063 45.000 0.00 0.00 37.55 3.96
4622 6273 2.104622 TGATCTAAATGGATCGCCTGCA 59.895 45.455 0.00 0.00 43.46 4.41
4623 6274 2.771089 TGATCTAAATGGATCGCCTGC 58.229 47.619 0.00 0.00 43.46 4.85
4624 6275 3.126514 GCATGATCTAAATGGATCGCCTG 59.873 47.826 0.00 2.30 43.46 4.85
4625 6276 3.244665 TGCATGATCTAAATGGATCGCCT 60.245 43.478 0.00 0.00 43.46 5.52
4626 6277 3.076621 TGCATGATCTAAATGGATCGCC 58.923 45.455 0.00 0.00 43.46 5.54
4627 6278 4.906423 GATGCATGATCTAAATGGATCGC 58.094 43.478 2.46 2.15 41.19 4.58
4631 6282 9.304335 ACATTATTGATGCATGATCTAAATGGA 57.696 29.630 2.46 0.00 39.47 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.