Multiple sequence alignment - TraesCS6D01G109700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G109700 chr6D 100.000 4010 0 0 1 4010 75378303 75374294 0.000000e+00 7406.0
1 TraesCS6D01G109700 chr6B 92.908 2933 112 33 586 3460 149060475 149057581 0.000000e+00 4176.0
2 TraesCS6D01G109700 chr6B 86.598 97 11 2 1 95 149147074 149146978 5.480000e-19 106.0
3 TraesCS6D01G109700 chr6B 92.188 64 5 0 3946 4009 149056800 149056737 1.530000e-14 91.6
4 TraesCS6D01G109700 chr6B 86.765 68 9 0 251 318 149060647 149060580 4.300000e-10 76.8
5 TraesCS6D01G109700 chr6A 94.489 2504 93 20 590 3060 91429630 91427139 0.000000e+00 3818.0
6 TraesCS6D01G109700 chr6A 94.890 724 16 11 3292 4010 91426987 91426280 0.000000e+00 1112.0
7 TraesCS6D01G109700 chr6A 96.894 161 4 1 3098 3257 91427146 91426986 6.610000e-68 268.0
8 TraesCS6D01G109700 chr7A 76.508 2039 412 53 1030 3024 617688827 617690842 0.000000e+00 1050.0
9 TraesCS6D01G109700 chr7A 89.933 149 13 2 318 464 281376497 281376349 1.470000e-44 191.0
10 TraesCS6D01G109700 chr7B 75.959 2034 429 47 1030 3024 577755968 577753956 0.000000e+00 992.0
11 TraesCS6D01G109700 chr7D 75.921 2035 425 52 1030 3021 535755407 535753395 0.000000e+00 983.0
12 TraesCS6D01G109700 chr3D 93.197 147 9 1 319 464 108284046 108284192 8.730000e-52 215.0
13 TraesCS6D01G109700 chr3D 89.933 149 13 2 318 464 355144917 355145065 1.470000e-44 191.0
14 TraesCS6D01G109700 chr3D 94.118 119 5 2 348 464 500253110 500253228 3.180000e-41 180.0
15 TraesCS6D01G109700 chr3A 89.865 148 14 1 319 465 742957074 742956927 5.290000e-44 189.0
16 TraesCS6D01G109700 chrUn 89.333 150 12 4 319 466 30085647 30085500 6.840000e-43 185.0
17 TraesCS6D01G109700 chr4B 89.262 149 13 3 319 465 602652724 602652871 2.460000e-42 183.0
18 TraesCS6D01G109700 chr1D 87.919 149 15 3 318 464 207730245 207730098 5.330000e-39 172.0
19 TraesCS6D01G109700 chr5B 86.897 145 16 3 323 465 611698719 611698862 4.150000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G109700 chr6D 75374294 75378303 4009 True 7406.000000 7406 100.000000 1 4010 1 chr6D.!!$R1 4009
1 TraesCS6D01G109700 chr6B 149056737 149060647 3910 True 1448.133333 4176 90.620333 251 4009 3 chr6B.!!$R2 3758
2 TraesCS6D01G109700 chr6A 91426280 91429630 3350 True 1732.666667 3818 95.424333 590 4010 3 chr6A.!!$R1 3420
3 TraesCS6D01G109700 chr7A 617688827 617690842 2015 False 1050.000000 1050 76.508000 1030 3024 1 chr7A.!!$F1 1994
4 TraesCS6D01G109700 chr7B 577753956 577755968 2012 True 992.000000 992 75.959000 1030 3024 1 chr7B.!!$R1 1994
5 TraesCS6D01G109700 chr7D 535753395 535755407 2012 True 983.000000 983 75.921000 1030 3021 1 chr7D.!!$R1 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.103937 CCAAGATCTGACGCTCCTCC 59.896 60.0 0.00 0.0 0.00 4.30 F
252 253 0.118346 TCCTCTGGAGCCAGGGTTAA 59.882 55.0 14.97 0.0 42.73 2.01 F
322 323 0.179034 GATGGGACTAGCAAGCAGGG 60.179 60.0 0.00 0.0 0.00 4.45 F
434 435 0.324943 CAGTATATGAAGGGGGCCGG 59.675 60.0 0.00 0.0 0.00 6.13 F
479 480 0.392998 CCTGCTAGCACGGGAACATT 60.393 55.0 14.93 0.0 38.48 2.71 F
567 591 0.861837 GCCAGTGAACGAACAGACAG 59.138 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2112 2.828868 TCCAGCAAACGCAGGAGT 59.171 55.556 0.00 0.00 39.91 3.85 R
2103 2196 3.118112 CCCTTGTCTGGCACTGAATATCT 60.118 47.826 0.00 0.00 38.22 1.98 R
2694 2787 3.026630 TCGTGGAACATCTCACTGAAC 57.973 47.619 0.00 0.00 44.52 3.18 R
2712 2805 0.388520 TGATCCACGCTGACTGTTCG 60.389 55.000 0.00 0.00 0.00 3.95 R
2751 2844 2.057922 ACAAGGTCACATGTCTCCCTT 58.942 47.619 12.36 12.36 35.95 3.95 R
3016 3115 5.233988 AGAACCGTTCTCTTGATTCTTCAG 58.766 41.667 8.03 0.00 34.07 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.953775 CCAACCCGCTCCACCACT 61.954 66.667 0.00 0.00 0.00 4.00
36 37 2.358737 CAACCCGCTCCACCACTC 60.359 66.667 0.00 0.00 0.00 3.51
37 38 2.526873 AACCCGCTCCACCACTCT 60.527 61.111 0.00 0.00 0.00 3.24
38 39 2.883828 AACCCGCTCCACCACTCTG 61.884 63.158 0.00 0.00 0.00 3.35
39 40 4.767255 CCCGCTCCACCACTCTGC 62.767 72.222 0.00 0.00 0.00 4.26
40 41 3.699894 CCGCTCCACCACTCTGCT 61.700 66.667 0.00 0.00 0.00 4.24
41 42 2.345244 CGCTCCACCACTCTGCTT 59.655 61.111 0.00 0.00 0.00 3.91
42 43 1.739562 CGCTCCACCACTCTGCTTC 60.740 63.158 0.00 0.00 0.00 3.86
43 44 1.376553 GCTCCACCACTCTGCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
44 45 1.835927 GCTCCACCACTCTGCTTCCT 61.836 60.000 0.00 0.00 0.00 3.36
45 46 0.689623 CTCCACCACTCTGCTTCCTT 59.310 55.000 0.00 0.00 0.00 3.36
46 47 0.687354 TCCACCACTCTGCTTCCTTC 59.313 55.000 0.00 0.00 0.00 3.46
47 48 0.322008 CCACCACTCTGCTTCCTTCC 60.322 60.000 0.00 0.00 0.00 3.46
48 49 0.322008 CACCACTCTGCTTCCTTCCC 60.322 60.000 0.00 0.00 0.00 3.97
49 50 1.078848 CCACTCTGCTTCCTTCCCG 60.079 63.158 0.00 0.00 0.00 5.14
50 51 1.743252 CACTCTGCTTCCTTCCCGC 60.743 63.158 0.00 0.00 0.00 6.13
51 52 2.124942 CTCTGCTTCCTTCCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
52 53 2.927856 TCTGCTTCCTTCCCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
53 54 2.034066 CTGCTTCCTTCCCGCCAA 59.966 61.111 0.00 0.00 0.00 4.52
54 55 2.034066 TGCTTCCTTCCCGCCAAG 59.966 61.111 0.00 0.00 0.00 3.61
55 56 2.351276 GCTTCCTTCCCGCCAAGA 59.649 61.111 0.00 0.00 0.00 3.02
56 57 1.077429 GCTTCCTTCCCGCCAAGAT 60.077 57.895 0.00 0.00 0.00 2.40
57 58 1.098129 GCTTCCTTCCCGCCAAGATC 61.098 60.000 0.00 0.00 0.00 2.75
58 59 0.543749 CTTCCTTCCCGCCAAGATCT 59.456 55.000 0.00 0.00 0.00 2.75
59 60 0.253044 TTCCTTCCCGCCAAGATCTG 59.747 55.000 0.00 0.00 0.00 2.90
60 61 0.617535 TCCTTCCCGCCAAGATCTGA 60.618 55.000 0.00 0.00 0.00 3.27
61 62 0.462759 CCTTCCCGCCAAGATCTGAC 60.463 60.000 0.00 0.00 0.00 3.51
62 63 0.807667 CTTCCCGCCAAGATCTGACG 60.808 60.000 0.00 0.19 0.00 4.35
63 64 2.852495 TTCCCGCCAAGATCTGACGC 62.852 60.000 0.00 0.00 0.00 5.19
64 65 2.185350 CCGCCAAGATCTGACGCT 59.815 61.111 0.00 0.00 0.00 5.07
65 66 1.880340 CCGCCAAGATCTGACGCTC 60.880 63.158 0.00 0.00 0.00 5.03
66 67 1.880340 CGCCAAGATCTGACGCTCC 60.880 63.158 0.00 0.00 0.00 4.70
67 68 1.519719 GCCAAGATCTGACGCTCCT 59.480 57.895 0.00 0.00 0.00 3.69
68 69 0.529555 GCCAAGATCTGACGCTCCTC 60.530 60.000 0.00 0.00 0.00 3.71
69 70 0.103937 CCAAGATCTGACGCTCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
70 71 0.820226 CAAGATCTGACGCTCCTCCA 59.180 55.000 0.00 0.00 0.00 3.86
71 72 0.820871 AAGATCTGACGCTCCTCCAC 59.179 55.000 0.00 0.00 0.00 4.02
72 73 1.064946 GATCTGACGCTCCTCCACG 59.935 63.158 0.00 0.00 0.00 4.94
73 74 2.945398 GATCTGACGCTCCTCCACGC 62.945 65.000 0.00 0.00 0.00 5.34
74 75 4.803426 CTGACGCTCCTCCACGCC 62.803 72.222 0.00 0.00 0.00 5.68
78 79 4.899239 CGCTCCTCCACGCCCATC 62.899 72.222 0.00 0.00 0.00 3.51
79 80 4.899239 GCTCCTCCACGCCCATCG 62.899 72.222 0.00 0.00 45.38 3.84
80 81 4.899239 CTCCTCCACGCCCATCGC 62.899 72.222 0.00 0.00 43.23 4.58
104 105 2.046314 CCGGCGAAGACCACCAAT 60.046 61.111 9.30 0.00 0.00 3.16
105 106 2.398554 CCGGCGAAGACCACCAATG 61.399 63.158 9.30 0.00 0.00 2.82
106 107 1.671054 CGGCGAAGACCACCAATGT 60.671 57.895 0.00 0.00 0.00 2.71
107 108 1.635663 CGGCGAAGACCACCAATGTC 61.636 60.000 0.00 0.00 0.00 3.06
108 109 0.321653 GGCGAAGACCACCAATGTCT 60.322 55.000 0.00 0.00 44.75 3.41
109 110 1.079503 GCGAAGACCACCAATGTCTC 58.920 55.000 0.00 0.00 42.10 3.36
110 111 1.350193 CGAAGACCACCAATGTCTCG 58.650 55.000 0.00 0.00 42.10 4.04
111 112 1.079503 GAAGACCACCAATGTCTCGC 58.920 55.000 0.00 0.00 42.10 5.03
112 113 0.670546 AAGACCACCAATGTCTCGCG 60.671 55.000 0.00 0.00 42.10 5.87
113 114 2.740714 GACCACCAATGTCTCGCGC 61.741 63.158 0.00 0.00 0.00 6.86
114 115 3.499737 CCACCAATGTCTCGCGCC 61.500 66.667 0.00 0.00 0.00 6.53
115 116 3.853330 CACCAATGTCTCGCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
118 119 4.214383 CAATGTCTCGCGCCGCTG 62.214 66.667 7.78 0.34 0.00 5.18
119 120 4.742201 AATGTCTCGCGCCGCTGT 62.742 61.111 7.78 0.00 0.00 4.40
120 121 4.742201 ATGTCTCGCGCCGCTGTT 62.742 61.111 7.78 0.00 0.00 3.16
131 132 4.374702 CGCTGTTCGCTGCACCAC 62.375 66.667 0.00 0.00 41.38 4.16
132 133 4.030452 GCTGTTCGCTGCACCACC 62.030 66.667 0.00 0.00 41.04 4.61
133 134 3.357079 CTGTTCGCTGCACCACCC 61.357 66.667 0.00 0.00 0.00 4.61
134 135 4.182433 TGTTCGCTGCACCACCCA 62.182 61.111 0.00 0.00 0.00 4.51
135 136 3.660111 GTTCGCTGCACCACCCAC 61.660 66.667 0.00 0.00 0.00 4.61
157 158 4.735132 CCGCCTCCGCACGAAAGA 62.735 66.667 0.00 0.00 34.03 2.52
158 159 3.181967 CGCCTCCGCACGAAAGAG 61.182 66.667 0.00 0.00 34.03 2.85
160 161 2.125512 CCTCCGCACGAAAGAGGG 60.126 66.667 6.08 0.00 42.98 4.30
161 162 2.815647 CTCCGCACGAAAGAGGGC 60.816 66.667 0.00 0.00 33.49 5.19
162 163 4.388499 TCCGCACGAAAGAGGGCC 62.388 66.667 0.00 0.00 33.49 5.80
165 166 3.119096 GCACGAAAGAGGGCCGTC 61.119 66.667 17.88 17.88 33.96 4.79
166 167 2.809601 CACGAAAGAGGGCCGTCG 60.810 66.667 19.29 16.68 39.37 5.12
167 168 2.987547 ACGAAAGAGGGCCGTCGA 60.988 61.111 19.29 0.00 36.98 4.20
168 169 2.202623 CGAAAGAGGGCCGTCGAG 60.203 66.667 19.29 8.64 35.54 4.04
169 170 2.697761 CGAAAGAGGGCCGTCGAGA 61.698 63.158 19.29 0.00 35.54 4.04
170 171 1.817209 GAAAGAGGGCCGTCGAGAT 59.183 57.895 19.29 7.34 0.00 2.75
171 172 0.528684 GAAAGAGGGCCGTCGAGATG 60.529 60.000 19.29 0.00 0.00 2.90
172 173 2.579684 AAAGAGGGCCGTCGAGATGC 62.580 60.000 19.29 0.00 0.00 3.91
173 174 4.933064 GAGGGCCGTCGAGATGCG 62.933 72.222 10.16 0.00 42.69 4.73
178 179 3.554692 CCGTCGAGATGCGCCAAC 61.555 66.667 4.18 0.00 40.61 3.77
179 180 3.902063 CGTCGAGATGCGCCAACG 61.902 66.667 4.18 5.97 44.07 4.10
180 181 2.506217 GTCGAGATGCGCCAACGA 60.506 61.111 4.18 8.49 43.93 3.85
181 182 2.506217 TCGAGATGCGCCAACGAC 60.506 61.111 4.18 0.00 43.93 4.34
182 183 3.902063 CGAGATGCGCCAACGACG 61.902 66.667 4.18 0.00 43.93 5.12
183 184 3.554692 GAGATGCGCCAACGACGG 61.555 66.667 4.18 0.00 43.93 4.79
191 192 4.988598 CCAACGACGGCAGTGGCT 62.989 66.667 15.48 1.59 40.87 4.75
192 193 2.048597 CAACGACGGCAGTGGCTA 60.049 61.111 15.48 0.00 40.87 3.93
193 194 2.094659 CAACGACGGCAGTGGCTAG 61.095 63.158 15.48 8.11 40.87 3.42
194 195 3.296709 AACGACGGCAGTGGCTAGG 62.297 63.158 15.48 5.71 40.87 3.02
195 196 3.449227 CGACGGCAGTGGCTAGGA 61.449 66.667 15.48 0.00 40.87 2.94
196 197 2.978824 GACGGCAGTGGCTAGGAA 59.021 61.111 15.48 0.00 40.87 3.36
197 198 1.153549 GACGGCAGTGGCTAGGAAG 60.154 63.158 15.48 0.09 40.87 3.46
198 199 1.605058 GACGGCAGTGGCTAGGAAGA 61.605 60.000 15.48 0.00 40.87 2.87
199 200 1.142748 CGGCAGTGGCTAGGAAGAG 59.857 63.158 15.48 0.00 40.87 2.85
200 201 1.153269 GGCAGTGGCTAGGAAGAGC 60.153 63.158 9.90 0.00 42.05 4.09
201 202 1.599047 GCAGTGGCTAGGAAGAGCA 59.401 57.895 0.00 0.00 44.76 4.26
202 203 0.179936 GCAGTGGCTAGGAAGAGCAT 59.820 55.000 0.00 0.00 44.76 3.79
203 204 1.414181 GCAGTGGCTAGGAAGAGCATA 59.586 52.381 0.00 0.00 44.76 3.14
204 205 2.038295 GCAGTGGCTAGGAAGAGCATAT 59.962 50.000 0.00 0.00 44.76 1.78
205 206 3.864160 GCAGTGGCTAGGAAGAGCATATC 60.864 52.174 0.00 0.00 44.76 1.63
206 207 3.323115 CAGTGGCTAGGAAGAGCATATCA 59.677 47.826 0.00 0.00 44.76 2.15
207 208 3.577848 AGTGGCTAGGAAGAGCATATCAG 59.422 47.826 0.00 0.00 44.76 2.90
208 209 2.902486 TGGCTAGGAAGAGCATATCAGG 59.098 50.000 0.00 0.00 44.76 3.86
209 210 2.235898 GGCTAGGAAGAGCATATCAGGG 59.764 54.545 0.00 0.00 44.76 4.45
210 211 2.354604 GCTAGGAAGAGCATATCAGGGC 60.355 54.545 0.00 0.00 42.36 5.19
211 212 1.811778 AGGAAGAGCATATCAGGGCA 58.188 50.000 0.00 0.00 0.00 5.36
212 213 1.419387 AGGAAGAGCATATCAGGGCAC 59.581 52.381 0.00 0.00 0.00 5.01
237 238 2.984435 TTTTAGGGTTTGGGGTCCTC 57.016 50.000 0.00 0.00 32.46 3.71
238 239 2.143231 TTTAGGGTTTGGGGTCCTCT 57.857 50.000 0.00 0.00 32.46 3.69
239 240 1.368374 TTAGGGTTTGGGGTCCTCTG 58.632 55.000 0.00 0.00 32.46 3.35
240 241 0.549169 TAGGGTTTGGGGTCCTCTGG 60.549 60.000 0.00 0.00 32.46 3.86
241 242 1.850755 GGGTTTGGGGTCCTCTGGA 60.851 63.158 0.00 0.00 0.00 3.86
242 243 1.685820 GGTTTGGGGTCCTCTGGAG 59.314 63.158 0.00 0.00 29.39 3.86
248 249 3.086600 GGTCCTCTGGAGCCAGGG 61.087 72.222 16.06 12.94 43.62 4.45
249 250 2.284995 GTCCTCTGGAGCCAGGGT 60.285 66.667 14.97 0.00 42.73 4.34
250 251 1.920835 GTCCTCTGGAGCCAGGGTT 60.921 63.158 14.97 0.00 42.73 4.11
251 252 0.617820 GTCCTCTGGAGCCAGGGTTA 60.618 60.000 14.97 0.46 42.73 2.85
252 253 0.118346 TCCTCTGGAGCCAGGGTTAA 59.882 55.000 14.97 0.00 42.73 2.01
253 254 0.991920 CCTCTGGAGCCAGGGTTAAA 59.008 55.000 14.97 0.00 42.73 1.52
254 255 1.566231 CCTCTGGAGCCAGGGTTAAAT 59.434 52.381 14.97 0.00 42.73 1.40
255 256 2.648059 CTCTGGAGCCAGGGTTAAATG 58.352 52.381 16.06 0.00 43.75 2.32
256 257 2.239654 CTCTGGAGCCAGGGTTAAATGA 59.760 50.000 16.06 0.00 43.75 2.57
290 291 8.853345 CATTCAGAATTTATTTTTGAGACACGG 58.147 33.333 0.00 0.00 0.00 4.94
298 299 0.976641 TTTGAGACACGGGAGCATCT 59.023 50.000 0.00 0.00 33.73 2.90
305 306 2.101582 GACACGGGAGCATCTAAGTGAT 59.898 50.000 0.00 0.00 37.24 3.06
315 316 4.944619 CATCTAAGTGATGGGACTAGCA 57.055 45.455 0.00 0.00 46.55 3.49
316 317 5.282055 CATCTAAGTGATGGGACTAGCAA 57.718 43.478 0.00 0.00 46.55 3.91
317 318 5.295950 CATCTAAGTGATGGGACTAGCAAG 58.704 45.833 0.00 0.00 46.55 4.01
318 319 2.409948 AAGTGATGGGACTAGCAAGC 57.590 50.000 0.00 0.00 0.00 4.01
319 320 1.279496 AGTGATGGGACTAGCAAGCA 58.721 50.000 0.00 0.00 0.00 3.91
320 321 1.209019 AGTGATGGGACTAGCAAGCAG 59.791 52.381 0.00 0.00 0.00 4.24
321 322 0.543277 TGATGGGACTAGCAAGCAGG 59.457 55.000 0.00 0.00 0.00 4.85
322 323 0.179034 GATGGGACTAGCAAGCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
323 324 1.639635 ATGGGACTAGCAAGCAGGGG 61.640 60.000 0.00 0.00 0.00 4.79
324 325 2.124529 GGACTAGCAAGCAGGGGC 60.125 66.667 0.00 0.00 41.61 5.80
334 335 4.321966 GCAGGGGCGGATCTAGGC 62.322 72.222 6.72 6.72 0.00 3.93
339 340 3.055580 GGCGGATCTAGGCCTCAG 58.944 66.667 9.68 5.64 45.93 3.35
340 341 2.578714 GGCGGATCTAGGCCTCAGG 61.579 68.421 9.68 0.27 45.93 3.86
367 368 3.528370 CTAGGTCCGGGGCGTGAG 61.528 72.222 0.00 0.00 0.00 3.51
378 379 2.044946 GCGTGAGGCCCATTTCCT 60.045 61.111 0.00 0.00 36.46 3.36
379 380 1.678970 GCGTGAGGCCCATTTCCTT 60.679 57.895 0.00 0.00 33.24 3.36
380 381 1.250840 GCGTGAGGCCCATTTCCTTT 61.251 55.000 0.00 0.00 33.24 3.11
381 382 0.527565 CGTGAGGCCCATTTCCTTTG 59.472 55.000 0.00 0.00 33.24 2.77
382 383 1.632589 GTGAGGCCCATTTCCTTTGT 58.367 50.000 0.00 0.00 33.24 2.83
383 384 1.273327 GTGAGGCCCATTTCCTTTGTG 59.727 52.381 0.00 0.00 33.24 3.33
384 385 0.897621 GAGGCCCATTTCCTTTGTGG 59.102 55.000 0.00 0.00 33.24 4.17
387 388 3.071671 CCCATTTCCTTTGTGGGCT 57.928 52.632 0.00 0.00 45.50 5.19
388 389 0.609662 CCCATTTCCTTTGTGGGCTG 59.390 55.000 0.00 0.00 45.50 4.85
389 390 1.341080 CCATTTCCTTTGTGGGCTGT 58.659 50.000 0.00 0.00 36.20 4.40
390 391 2.524306 CCATTTCCTTTGTGGGCTGTA 58.476 47.619 0.00 0.00 36.20 2.74
391 392 2.493278 CCATTTCCTTTGTGGGCTGTAG 59.507 50.000 0.00 0.00 36.20 2.74
392 393 1.616159 TTTCCTTTGTGGGCTGTAGC 58.384 50.000 0.00 0.00 41.14 3.58
393 394 0.476338 TTCCTTTGTGGGCTGTAGCA 59.524 50.000 6.18 0.00 44.36 3.49
394 395 0.476338 TCCTTTGTGGGCTGTAGCAA 59.524 50.000 6.18 0.00 44.36 3.91
395 396 1.133637 TCCTTTGTGGGCTGTAGCAAA 60.134 47.619 6.18 0.00 44.36 3.68
396 397 1.686052 CCTTTGTGGGCTGTAGCAAAA 59.314 47.619 6.18 0.74 44.36 2.44
397 398 2.102252 CCTTTGTGGGCTGTAGCAAAAA 59.898 45.455 6.18 0.42 44.36 1.94
398 399 3.244181 CCTTTGTGGGCTGTAGCAAAAAT 60.244 43.478 6.18 0.00 44.36 1.82
399 400 4.021544 CCTTTGTGGGCTGTAGCAAAAATA 60.022 41.667 6.18 0.00 44.36 1.40
400 401 4.513198 TTGTGGGCTGTAGCAAAAATAC 57.487 40.909 6.18 0.00 44.36 1.89
401 402 3.761897 TGTGGGCTGTAGCAAAAATACT 58.238 40.909 6.18 0.00 44.36 2.12
402 403 3.505680 TGTGGGCTGTAGCAAAAATACTG 59.494 43.478 6.18 0.00 44.36 2.74
403 404 3.506067 GTGGGCTGTAGCAAAAATACTGT 59.494 43.478 6.18 0.00 44.36 3.55
404 405 4.698304 GTGGGCTGTAGCAAAAATACTGTA 59.302 41.667 6.18 0.00 44.36 2.74
405 406 4.941263 TGGGCTGTAGCAAAAATACTGTAG 59.059 41.667 6.18 0.00 44.36 2.74
406 407 4.201920 GGGCTGTAGCAAAAATACTGTAGC 60.202 45.833 6.18 0.00 44.36 3.58
407 408 4.394920 GGCTGTAGCAAAAATACTGTAGCA 59.605 41.667 6.18 0.00 44.36 3.49
408 409 5.106317 GGCTGTAGCAAAAATACTGTAGCAA 60.106 40.000 6.18 0.00 44.36 3.91
409 410 6.404734 GGCTGTAGCAAAAATACTGTAGCAAT 60.405 38.462 6.18 0.00 44.36 3.56
410 411 7.029563 GCTGTAGCAAAAATACTGTAGCAATT 58.970 34.615 0.00 0.00 41.59 2.32
411 412 7.008628 GCTGTAGCAAAAATACTGTAGCAATTG 59.991 37.037 0.00 0.00 41.59 2.32
412 413 6.806249 TGTAGCAAAAATACTGTAGCAATTGC 59.194 34.615 23.05 23.05 41.52 3.56
428 429 6.246420 GCAATTGCTACAGTATATGAAGGG 57.754 41.667 23.21 0.00 38.21 3.95
429 430 5.182001 GCAATTGCTACAGTATATGAAGGGG 59.818 44.000 23.21 0.00 38.21 4.79
430 431 4.974645 TTGCTACAGTATATGAAGGGGG 57.025 45.455 0.00 0.00 0.00 5.40
431 432 2.637872 TGCTACAGTATATGAAGGGGGC 59.362 50.000 0.00 0.00 0.00 5.80
432 433 2.027100 GCTACAGTATATGAAGGGGGCC 60.027 54.545 0.00 0.00 0.00 5.80
433 434 1.056660 ACAGTATATGAAGGGGGCCG 58.943 55.000 0.00 0.00 0.00 6.13
434 435 0.324943 CAGTATATGAAGGGGGCCGG 59.675 60.000 0.00 0.00 0.00 6.13
435 436 0.840722 AGTATATGAAGGGGGCCGGG 60.841 60.000 2.18 0.00 0.00 5.73
436 437 1.540367 TATATGAAGGGGGCCGGGG 60.540 63.158 2.18 0.00 0.00 5.73
455 456 4.891037 GCTGGGCTGGGCTGGATC 62.891 72.222 0.00 0.00 0.00 3.36
456 457 4.201122 CTGGGCTGGGCTGGATCC 62.201 72.222 4.20 4.20 0.00 3.36
466 467 2.844362 CTGGATCCGCCCCTGCTA 60.844 66.667 7.39 0.00 34.97 3.49
470 471 3.816367 GATCCGCCCCTGCTAGCAC 62.816 68.421 14.93 2.78 34.43 4.40
479 480 0.392998 CCTGCTAGCACGGGAACATT 60.393 55.000 14.93 0.00 38.48 2.71
495 496 4.143094 GGAACATTCGAAGTTGTGCTAGAC 60.143 45.833 14.84 0.00 0.00 2.59
496 497 4.258702 ACATTCGAAGTTGTGCTAGACT 57.741 40.909 3.35 0.00 0.00 3.24
498 499 5.779922 ACATTCGAAGTTGTGCTAGACTTA 58.220 37.500 3.35 0.00 36.31 2.24
499 500 6.220930 ACATTCGAAGTTGTGCTAGACTTAA 58.779 36.000 3.35 0.00 36.31 1.85
500 501 6.704493 ACATTCGAAGTTGTGCTAGACTTAAA 59.296 34.615 3.35 0.00 36.31 1.52
501 502 6.520792 TTCGAAGTTGTGCTAGACTTAAAC 57.479 37.500 0.00 0.00 36.31 2.01
503 504 6.973843 TCGAAGTTGTGCTAGACTTAAACTA 58.026 36.000 0.00 0.00 36.31 2.24
504 505 7.428020 TCGAAGTTGTGCTAGACTTAAACTAA 58.572 34.615 0.00 0.00 36.31 2.24
505 506 7.922278 TCGAAGTTGTGCTAGACTTAAACTAAA 59.078 33.333 0.00 0.00 36.31 1.85
506 507 8.545420 CGAAGTTGTGCTAGACTTAAACTAAAA 58.455 33.333 0.00 0.00 36.31 1.52
559 583 4.680237 CCCTGCGCCAGTGAACGA 62.680 66.667 4.18 0.00 0.00 3.85
560 584 2.664851 CCTGCGCCAGTGAACGAA 60.665 61.111 4.18 0.00 0.00 3.85
561 585 2.551270 CTGCGCCAGTGAACGAAC 59.449 61.111 4.18 0.00 0.00 3.95
562 586 2.202946 TGCGCCAGTGAACGAACA 60.203 55.556 4.18 0.00 0.00 3.18
563 587 2.162921 CTGCGCCAGTGAACGAACAG 62.163 60.000 4.18 4.75 0.00 3.16
564 588 1.954146 GCGCCAGTGAACGAACAGA 60.954 57.895 9.36 0.00 0.00 3.41
565 589 1.853319 CGCCAGTGAACGAACAGAC 59.147 57.895 0.00 0.00 0.00 3.51
566 590 0.874175 CGCCAGTGAACGAACAGACA 60.874 55.000 0.00 0.00 0.00 3.41
567 591 0.861837 GCCAGTGAACGAACAGACAG 59.138 55.000 0.00 0.00 0.00 3.51
568 592 1.538204 GCCAGTGAACGAACAGACAGA 60.538 52.381 0.00 0.00 0.00 3.41
569 593 2.821546 CCAGTGAACGAACAGACAGAA 58.178 47.619 0.00 0.00 0.00 3.02
570 594 3.194861 CCAGTGAACGAACAGACAGAAA 58.805 45.455 0.00 0.00 0.00 2.52
571 595 3.621268 CCAGTGAACGAACAGACAGAAAA 59.379 43.478 0.00 0.00 0.00 2.29
572 596 4.094294 CCAGTGAACGAACAGACAGAAAAA 59.906 41.667 0.00 0.00 0.00 1.94
573 597 5.220854 CCAGTGAACGAACAGACAGAAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
574 598 6.018262 CCAGTGAACGAACAGACAGAAAAATA 60.018 38.462 0.00 0.00 0.00 1.40
575 599 7.406553 CAGTGAACGAACAGACAGAAAAATAA 58.593 34.615 0.00 0.00 0.00 1.40
576 600 8.070171 CAGTGAACGAACAGACAGAAAAATAAT 58.930 33.333 0.00 0.00 0.00 1.28
577 601 8.070171 AGTGAACGAACAGACAGAAAAATAATG 58.930 33.333 0.00 0.00 0.00 1.90
578 602 7.855904 GTGAACGAACAGACAGAAAAATAATGT 59.144 33.333 0.00 0.00 0.00 2.71
579 603 9.047371 TGAACGAACAGACAGAAAAATAATGTA 57.953 29.630 0.00 0.00 0.00 2.29
580 604 9.872757 GAACGAACAGACAGAAAAATAATGTAA 57.127 29.630 0.00 0.00 0.00 2.41
671 698 2.363680 GGATGCTCGAAATCTCCTCTGA 59.636 50.000 7.49 0.00 0.00 3.27
672 699 2.949451 TGCTCGAAATCTCCTCTGAC 57.051 50.000 0.00 0.00 0.00 3.51
673 700 2.171003 TGCTCGAAATCTCCTCTGACA 58.829 47.619 0.00 0.00 0.00 3.58
674 701 2.762887 TGCTCGAAATCTCCTCTGACAT 59.237 45.455 0.00 0.00 0.00 3.06
675 702 3.181482 TGCTCGAAATCTCCTCTGACATC 60.181 47.826 0.00 0.00 0.00 3.06
676 703 3.181482 GCTCGAAATCTCCTCTGACATCA 60.181 47.826 0.00 0.00 0.00 3.07
677 704 4.609947 CTCGAAATCTCCTCTGACATCAG 58.390 47.826 2.24 2.24 45.08 2.90
678 705 4.019858 TCGAAATCTCCTCTGACATCAGT 58.980 43.478 8.70 0.00 44.12 3.41
721 748 1.064906 AGCACCATCCTCCTGTCAATG 60.065 52.381 0.00 0.00 0.00 2.82
777 810 0.885196 GCATACGCCCCAAAAGTTCA 59.115 50.000 0.00 0.00 0.00 3.18
780 813 2.570415 TACGCCCCAAAAGTTCATCA 57.430 45.000 0.00 0.00 0.00 3.07
789 825 1.455822 AAAGTTCATCACCCCCTCCA 58.544 50.000 0.00 0.00 0.00 3.86
809 845 1.616159 TTTTCCTCCGCTTTCCCTTG 58.384 50.000 0.00 0.00 0.00 3.61
888 966 3.513438 GCAGCGCGAGGAGAGAGA 61.513 66.667 12.10 0.00 0.00 3.10
929 1007 2.896677 ATCCGGCCTCCAGGATCACA 62.897 60.000 0.00 0.00 43.27 3.58
987 1065 2.094442 GGTTCTTTCACCCTCTCTCTCG 60.094 54.545 0.00 0.00 0.00 4.04
988 1066 1.178276 TCTTTCACCCTCTCTCTCGC 58.822 55.000 0.00 0.00 0.00 5.03
992 1070 4.824515 ACCCTCTCTCTCGCCCCG 62.825 72.222 0.00 0.00 0.00 5.73
993 1071 4.824515 CCCTCTCTCTCGCCCCGT 62.825 72.222 0.00 0.00 0.00 5.28
994 1072 3.522731 CCTCTCTCTCGCCCCGTG 61.523 72.222 0.00 0.00 0.00 4.94
1025 1103 3.360340 GGACGTCGACGACAGGGT 61.360 66.667 41.52 20.46 43.02 4.34
1602 1683 2.127496 CTCGCGTTGCAGCAACAG 60.127 61.111 32.46 25.61 43.70 3.16
2019 2112 6.151648 CAGATGCTAAGAAAGACCCAATCAAA 59.848 38.462 0.00 0.00 0.00 2.69
2034 2127 3.168628 CAAACTCCTGCGTTTGCTG 57.831 52.632 3.82 0.00 44.77 4.41
2103 2196 2.904866 GGCGGAAAGGTGTGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
2694 2787 3.920412 GCCTTAAAACTTTCAATGCGAGG 59.080 43.478 0.00 0.00 0.00 4.63
2712 2805 3.330267 GAGGTTCAGTGAGATGTTCCAC 58.670 50.000 0.00 0.00 0.00 4.02
2751 2844 2.297698 TACCGGACAAGGACTTGAGA 57.702 50.000 18.15 0.00 42.93 3.27
3016 3115 3.674997 TCCACAGTGAAATAACTCCAGC 58.325 45.455 0.62 0.00 0.00 4.85
3090 3201 6.039270 TGAGACCAGTTTATTTTTCACCAGTG 59.961 38.462 0.00 0.00 0.00 3.66
3091 3202 6.126409 AGACCAGTTTATTTTTCACCAGTGA 58.874 36.000 0.00 0.00 37.91 3.41
3092 3203 6.039382 AGACCAGTTTATTTTTCACCAGTGAC 59.961 38.462 0.00 0.00 39.66 3.67
3094 3205 5.301805 CCAGTTTATTTTTCACCAGTGACCT 59.698 40.000 0.00 0.00 39.66 3.85
3095 3206 6.208644 CAGTTTATTTTTCACCAGTGACCTG 58.791 40.000 0.00 0.00 39.66 4.00
3096 3207 5.891551 AGTTTATTTTTCACCAGTGACCTGT 59.108 36.000 0.00 0.00 39.66 4.00
3097 3208 7.012894 CAGTTTATTTTTCACCAGTGACCTGTA 59.987 37.037 0.00 0.00 39.66 2.74
3098 3209 7.558444 AGTTTATTTTTCACCAGTGACCTGTAA 59.442 33.333 0.00 0.00 39.66 2.41
3099 3210 8.357402 GTTTATTTTTCACCAGTGACCTGTAAT 58.643 33.333 0.00 0.01 39.66 1.89
3100 3211 5.766150 TTTTTCACCAGTGACCTGTAATG 57.234 39.130 0.00 0.00 39.66 1.90
3101 3212 4.698201 TTTCACCAGTGACCTGTAATGA 57.302 40.909 0.00 0.00 39.66 2.57
3226 3366 3.641434 ATGTGAGATGCTGCCTAAGTT 57.359 42.857 0.00 0.00 0.00 2.66
3227 3367 4.760530 ATGTGAGATGCTGCCTAAGTTA 57.239 40.909 0.00 0.00 0.00 2.24
3228 3368 4.551702 TGTGAGATGCTGCCTAAGTTAA 57.448 40.909 0.00 0.00 0.00 2.01
3229 3369 4.253685 TGTGAGATGCTGCCTAAGTTAAC 58.746 43.478 0.00 0.00 0.00 2.01
3230 3370 4.020218 TGTGAGATGCTGCCTAAGTTAACT 60.020 41.667 1.12 1.12 0.00 2.24
3231 3371 4.938226 GTGAGATGCTGCCTAAGTTAACTT 59.062 41.667 23.58 23.58 39.85 2.66
3232 3372 5.064071 GTGAGATGCTGCCTAAGTTAACTTC 59.936 44.000 23.76 10.91 37.40 3.01
3233 3373 5.046304 TGAGATGCTGCCTAAGTTAACTTCT 60.046 40.000 23.76 11.74 37.40 2.85
3234 3374 5.423886 AGATGCTGCCTAAGTTAACTTCTC 58.576 41.667 23.76 14.06 37.40 2.87
3235 3375 3.939066 TGCTGCCTAAGTTAACTTCTCC 58.061 45.455 23.76 13.16 37.40 3.71
3236 3376 3.583086 TGCTGCCTAAGTTAACTTCTCCT 59.417 43.478 23.76 2.97 37.40 3.69
3237 3377 4.775780 TGCTGCCTAAGTTAACTTCTCCTA 59.224 41.667 23.76 5.89 37.40 2.94
3238 3378 5.425539 TGCTGCCTAAGTTAACTTCTCCTAT 59.574 40.000 23.76 1.45 37.40 2.57
3239 3379 6.070194 TGCTGCCTAAGTTAACTTCTCCTATT 60.070 38.462 23.76 0.68 37.40 1.73
3240 3380 6.480651 GCTGCCTAAGTTAACTTCTCCTATTC 59.519 42.308 23.76 7.09 37.40 1.75
3241 3381 6.885922 TGCCTAAGTTAACTTCTCCTATTCC 58.114 40.000 23.76 5.07 37.40 3.01
3261 3401 4.689062 TCCTACCTTCTTTCTGTGGATCT 58.311 43.478 0.00 0.00 0.00 2.75
3287 3427 6.912426 TCAGTATCTCTAGGACCATGTAGTT 58.088 40.000 0.00 0.00 0.00 2.24
3307 3447 6.442513 AGTTTTCTGTTCAGGAACTTCTTG 57.557 37.500 12.86 0.00 41.67 3.02
3516 3659 1.835483 AAGCTCGTTGTTGCGCTCAG 61.835 55.000 9.73 0.00 31.30 3.35
3517 3660 2.598632 GCTCGTTGTTGCGCTCAGT 61.599 57.895 9.73 0.00 0.00 3.41
3518 3661 1.488957 CTCGTTGTTGCGCTCAGTC 59.511 57.895 9.73 4.94 0.00 3.51
3519 3662 1.891060 CTCGTTGTTGCGCTCAGTCC 61.891 60.000 9.73 0.02 0.00 3.85
3521 3664 1.891919 GTTGTTGCGCTCAGTCCCA 60.892 57.895 9.73 0.00 0.00 4.37
3522 3665 1.073025 TTGTTGCGCTCAGTCCCAT 59.927 52.632 9.73 0.00 0.00 4.00
3523 3666 1.236616 TTGTTGCGCTCAGTCCCATG 61.237 55.000 9.73 0.00 0.00 3.66
3563 3707 0.538584 AGTGCATCGATCCTTCAGCA 59.461 50.000 0.00 0.00 0.00 4.41
3592 3736 7.463544 TCTTTTGCATGATATTGTTGTAGACG 58.536 34.615 0.00 0.00 0.00 4.18
3649 3793 2.096248 TGTTTTCGCACTTTTGTCCCT 58.904 42.857 0.00 0.00 0.00 4.20
3654 3798 1.879380 TCGCACTTTTGTCCCTGATTG 59.121 47.619 0.00 0.00 0.00 2.67
3724 3868 2.424234 GGGCTGGCTTTGATGGGTAATA 60.424 50.000 0.00 0.00 0.00 0.98
3725 3869 2.623416 GGCTGGCTTTGATGGGTAATAC 59.377 50.000 0.00 0.00 0.00 1.89
3726 3870 3.555966 GCTGGCTTTGATGGGTAATACT 58.444 45.455 0.00 0.00 0.00 2.12
3852 4438 0.392193 TCTCACCGACGACCTACTCC 60.392 60.000 0.00 0.00 0.00 3.85
3853 4439 0.392729 CTCACCGACGACCTACTCCT 60.393 60.000 0.00 0.00 0.00 3.69
3854 4440 0.904649 TCACCGACGACCTACTCCTA 59.095 55.000 0.00 0.00 0.00 2.94
3861 4447 2.865551 GACGACCTACTCCTAGTCGAAG 59.134 54.545 17.54 0.00 40.29 3.79
3894 4480 9.716507 CCGAAATTCTGGTGTTAGTAATAATTG 57.283 33.333 0.00 0.00 0.00 2.32
3997 4614 4.698304 CAGCATTTTGAATTGGATTGGCTT 59.302 37.500 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.901797 GAGTGGTGGAGCGGGTTGG 62.902 68.421 0.00 0.00 0.00 3.77
19 20 2.358737 GAGTGGTGGAGCGGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
20 21 2.526873 AGAGTGGTGGAGCGGGTT 60.527 61.111 0.00 0.00 0.00 4.11
21 22 3.314331 CAGAGTGGTGGAGCGGGT 61.314 66.667 0.00 0.00 0.00 5.28
22 23 4.767255 GCAGAGTGGTGGAGCGGG 62.767 72.222 0.00 0.00 0.00 6.13
23 24 3.245668 AAGCAGAGTGGTGGAGCGG 62.246 63.158 0.00 0.00 0.00 5.52
24 25 1.739562 GAAGCAGAGTGGTGGAGCG 60.740 63.158 0.00 0.00 0.00 5.03
25 26 1.376553 GGAAGCAGAGTGGTGGAGC 60.377 63.158 0.00 0.00 0.00 4.70
26 27 0.689623 AAGGAAGCAGAGTGGTGGAG 59.310 55.000 0.00 0.00 0.00 3.86
27 28 0.687354 GAAGGAAGCAGAGTGGTGGA 59.313 55.000 0.00 0.00 0.00 4.02
28 29 0.322008 GGAAGGAAGCAGAGTGGTGG 60.322 60.000 0.00 0.00 0.00 4.61
29 30 0.322008 GGGAAGGAAGCAGAGTGGTG 60.322 60.000 0.00 0.00 0.00 4.17
30 31 1.831652 CGGGAAGGAAGCAGAGTGGT 61.832 60.000 0.00 0.00 0.00 4.16
31 32 1.078848 CGGGAAGGAAGCAGAGTGG 60.079 63.158 0.00 0.00 0.00 4.00
32 33 1.743252 GCGGGAAGGAAGCAGAGTG 60.743 63.158 0.00 0.00 0.00 3.51
33 34 2.665603 GCGGGAAGGAAGCAGAGT 59.334 61.111 0.00 0.00 0.00 3.24
34 35 2.124942 GGCGGGAAGGAAGCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
35 36 2.469465 CTTGGCGGGAAGGAAGCAGA 62.469 60.000 0.00 0.00 0.00 4.26
36 37 2.034066 TTGGCGGGAAGGAAGCAG 59.966 61.111 0.00 0.00 0.00 4.24
37 38 1.852157 ATCTTGGCGGGAAGGAAGCA 61.852 55.000 0.00 0.00 0.00 3.91
38 39 1.077429 ATCTTGGCGGGAAGGAAGC 60.077 57.895 0.00 0.00 0.00 3.86
39 40 0.543749 AGATCTTGGCGGGAAGGAAG 59.456 55.000 0.00 0.00 0.00 3.46
40 41 0.253044 CAGATCTTGGCGGGAAGGAA 59.747 55.000 0.00 0.00 0.00 3.36
41 42 0.617535 TCAGATCTTGGCGGGAAGGA 60.618 55.000 0.00 0.00 0.00 3.36
42 43 0.462759 GTCAGATCTTGGCGGGAAGG 60.463 60.000 0.00 0.00 0.00 3.46
43 44 3.071580 GTCAGATCTTGGCGGGAAG 57.928 57.895 0.00 0.00 0.00 3.46
49 50 0.529555 GAGGAGCGTCAGATCTTGGC 60.530 60.000 0.00 0.00 32.47 4.52
50 51 0.103937 GGAGGAGCGTCAGATCTTGG 59.896 60.000 0.00 0.00 32.47 3.61
51 52 0.820226 TGGAGGAGCGTCAGATCTTG 59.180 55.000 0.00 0.00 32.47 3.02
52 53 0.820871 GTGGAGGAGCGTCAGATCTT 59.179 55.000 0.00 0.00 32.47 2.40
53 54 1.380403 CGTGGAGGAGCGTCAGATCT 61.380 60.000 0.00 0.00 32.47 2.75
54 55 1.064946 CGTGGAGGAGCGTCAGATC 59.935 63.158 0.00 0.00 0.00 2.75
55 56 3.069980 GCGTGGAGGAGCGTCAGAT 62.070 63.158 0.00 0.00 0.00 2.90
56 57 3.749064 GCGTGGAGGAGCGTCAGA 61.749 66.667 0.00 0.00 0.00 3.27
57 58 4.803426 GGCGTGGAGGAGCGTCAG 62.803 72.222 0.00 0.00 32.48 3.51
61 62 4.899239 GATGGGCGTGGAGGAGCG 62.899 72.222 0.00 0.00 0.00 5.03
62 63 4.899239 CGATGGGCGTGGAGGAGC 62.899 72.222 0.00 0.00 34.64 4.70
63 64 4.899239 GCGATGGGCGTGGAGGAG 62.899 72.222 0.00 0.00 43.41 3.69
89 90 0.321653 AGACATTGGTGGTCTTCGCC 60.322 55.000 0.00 0.00 42.77 5.54
90 91 1.079503 GAGACATTGGTGGTCTTCGC 58.920 55.000 0.00 0.00 45.21 4.70
91 92 1.350193 CGAGACATTGGTGGTCTTCG 58.650 55.000 0.00 0.00 45.21 3.79
92 93 1.079503 GCGAGACATTGGTGGTCTTC 58.920 55.000 0.00 0.00 45.21 2.87
93 94 0.670546 CGCGAGACATTGGTGGTCTT 60.671 55.000 0.00 0.00 45.21 3.01
95 96 2.740714 GCGCGAGACATTGGTGGTC 61.741 63.158 12.10 0.00 35.50 4.02
96 97 2.742372 GCGCGAGACATTGGTGGT 60.742 61.111 12.10 0.00 0.00 4.16
97 98 3.499737 GGCGCGAGACATTGGTGG 61.500 66.667 12.10 0.00 40.66 4.61
98 99 3.853330 CGGCGCGAGACATTGGTG 61.853 66.667 12.10 0.00 41.50 4.17
101 102 4.214383 CAGCGGCGCGAGACATTG 62.214 66.667 27.59 13.63 41.50 2.82
102 103 4.742201 ACAGCGGCGCGAGACATT 62.742 61.111 27.59 3.49 41.50 2.71
103 104 4.742201 AACAGCGGCGCGAGACAT 62.742 61.111 27.59 4.38 41.50 3.06
116 117 3.357079 GGGTGGTGCAGCGAACAG 61.357 66.667 11.91 0.00 32.08 3.16
117 118 4.182433 TGGGTGGTGCAGCGAACA 62.182 61.111 11.91 6.77 32.08 3.18
118 119 3.660111 GTGGGTGGTGCAGCGAAC 61.660 66.667 11.91 4.54 32.08 3.95
140 141 4.735132 TCTTTCGTGCGGAGGCGG 62.735 66.667 0.00 0.00 44.10 6.13
141 142 3.181967 CTCTTTCGTGCGGAGGCG 61.182 66.667 0.00 0.00 44.10 5.52
142 143 2.815647 CCTCTTTCGTGCGGAGGC 60.816 66.667 0.00 0.00 39.87 4.70
143 144 2.125512 CCCTCTTTCGTGCGGAGG 60.126 66.667 7.94 7.94 44.36 4.30
144 145 2.815647 GCCCTCTTTCGTGCGGAG 60.816 66.667 0.00 0.00 0.00 4.63
145 146 4.388499 GGCCCTCTTTCGTGCGGA 62.388 66.667 0.00 0.00 0.00 5.54
148 149 3.119096 GACGGCCCTCTTTCGTGC 61.119 66.667 0.00 0.00 37.25 5.34
149 150 2.809601 CGACGGCCCTCTTTCGTG 60.810 66.667 0.00 0.00 37.25 4.35
150 151 2.987547 TCGACGGCCCTCTTTCGT 60.988 61.111 0.00 0.00 39.99 3.85
151 152 2.005960 ATCTCGACGGCCCTCTTTCG 62.006 60.000 0.00 0.00 0.00 3.46
152 153 0.528684 CATCTCGACGGCCCTCTTTC 60.529 60.000 0.00 0.00 0.00 2.62
153 154 1.517832 CATCTCGACGGCCCTCTTT 59.482 57.895 0.00 0.00 0.00 2.52
154 155 3.082579 GCATCTCGACGGCCCTCTT 62.083 63.158 0.00 0.00 0.00 2.85
155 156 3.532155 GCATCTCGACGGCCCTCT 61.532 66.667 0.00 0.00 0.00 3.69
156 157 4.933064 CGCATCTCGACGGCCCTC 62.933 72.222 0.00 0.00 41.67 4.30
164 165 2.506217 GTCGTTGGCGCATCTCGA 60.506 61.111 10.83 10.88 41.67 4.04
165 166 3.902063 CGTCGTTGGCGCATCTCG 61.902 66.667 10.83 8.48 42.12 4.04
166 167 3.554692 CCGTCGTTGGCGCATCTC 61.555 66.667 10.83 0.00 38.14 2.75
174 175 3.583276 TAGCCACTGCCGTCGTTGG 62.583 63.158 0.00 0.00 38.69 3.77
175 176 2.048597 TAGCCACTGCCGTCGTTG 60.049 61.111 0.00 0.00 38.69 4.10
176 177 2.261671 CTAGCCACTGCCGTCGTT 59.738 61.111 0.00 0.00 38.69 3.85
177 178 3.760035 CCTAGCCACTGCCGTCGT 61.760 66.667 0.00 0.00 38.69 4.34
178 179 2.890847 CTTCCTAGCCACTGCCGTCG 62.891 65.000 0.00 0.00 38.69 5.12
179 180 1.153549 CTTCCTAGCCACTGCCGTC 60.154 63.158 0.00 0.00 38.69 4.79
180 181 1.608717 CTCTTCCTAGCCACTGCCGT 61.609 60.000 0.00 0.00 38.69 5.68
181 182 1.142748 CTCTTCCTAGCCACTGCCG 59.857 63.158 0.00 0.00 38.69 5.69
182 183 1.153269 GCTCTTCCTAGCCACTGCC 60.153 63.158 0.00 0.00 38.69 4.85
183 184 0.179936 ATGCTCTTCCTAGCCACTGC 59.820 55.000 0.00 0.00 42.05 4.40
184 185 3.323115 TGATATGCTCTTCCTAGCCACTG 59.677 47.826 0.00 0.00 42.05 3.66
185 186 3.577848 CTGATATGCTCTTCCTAGCCACT 59.422 47.826 0.00 0.00 42.05 4.00
186 187 3.306641 CCTGATATGCTCTTCCTAGCCAC 60.307 52.174 0.00 0.00 42.05 5.01
187 188 2.902486 CCTGATATGCTCTTCCTAGCCA 59.098 50.000 0.00 0.00 42.05 4.75
188 189 2.235898 CCCTGATATGCTCTTCCTAGCC 59.764 54.545 0.00 0.00 42.05 3.93
189 190 2.354604 GCCCTGATATGCTCTTCCTAGC 60.355 54.545 0.00 0.00 43.08 3.42
190 191 2.902486 TGCCCTGATATGCTCTTCCTAG 59.098 50.000 0.00 0.00 0.00 3.02
191 192 2.634940 GTGCCCTGATATGCTCTTCCTA 59.365 50.000 0.00 0.00 0.00 2.94
192 193 1.419387 GTGCCCTGATATGCTCTTCCT 59.581 52.381 0.00 0.00 0.00 3.36
193 194 1.544314 GGTGCCCTGATATGCTCTTCC 60.544 57.143 0.00 0.00 0.00 3.46
194 195 1.419387 AGGTGCCCTGATATGCTCTTC 59.581 52.381 0.00 0.00 29.57 2.87
195 196 1.419387 GAGGTGCCCTGATATGCTCTT 59.581 52.381 0.00 0.00 31.76 2.85
196 197 1.055040 GAGGTGCCCTGATATGCTCT 58.945 55.000 0.00 0.00 31.76 4.09
197 198 1.055040 AGAGGTGCCCTGATATGCTC 58.945 55.000 0.00 0.00 31.76 4.26
198 199 1.516110 AAGAGGTGCCCTGATATGCT 58.484 50.000 0.00 0.00 31.76 3.79
199 200 2.355010 AAAGAGGTGCCCTGATATGC 57.645 50.000 0.00 0.00 31.76 3.14
217 218 2.792967 AGAGGACCCCAAACCCTAAAAA 59.207 45.455 0.00 0.00 0.00 1.94
218 219 2.109304 CAGAGGACCCCAAACCCTAAAA 59.891 50.000 0.00 0.00 0.00 1.52
219 220 1.708551 CAGAGGACCCCAAACCCTAAA 59.291 52.381 0.00 0.00 0.00 1.85
220 221 1.368374 CAGAGGACCCCAAACCCTAA 58.632 55.000 0.00 0.00 0.00 2.69
221 222 0.549169 CCAGAGGACCCCAAACCCTA 60.549 60.000 0.00 0.00 0.00 3.53
222 223 1.852626 CCAGAGGACCCCAAACCCT 60.853 63.158 0.00 0.00 0.00 4.34
223 224 1.850755 TCCAGAGGACCCCAAACCC 60.851 63.158 0.00 0.00 0.00 4.11
224 225 1.685820 CTCCAGAGGACCCCAAACC 59.314 63.158 0.00 0.00 0.00 3.27
225 226 1.002011 GCTCCAGAGGACCCCAAAC 60.002 63.158 0.00 0.00 0.00 2.93
226 227 2.231380 GGCTCCAGAGGACCCCAAA 61.231 63.158 0.00 0.00 0.00 3.28
227 228 2.610859 GGCTCCAGAGGACCCCAA 60.611 66.667 0.00 0.00 0.00 4.12
228 229 3.931631 CTGGCTCCAGAGGACCCCA 62.932 68.421 10.33 0.00 46.30 4.96
229 230 3.086600 CTGGCTCCAGAGGACCCC 61.087 72.222 10.33 0.00 46.30 4.95
230 231 3.086600 CCTGGCTCCAGAGGACCC 61.087 72.222 17.08 0.00 46.30 4.46
231 232 3.086600 CCCTGGCTCCAGAGGACC 61.087 72.222 17.08 0.00 46.30 4.46
232 233 0.617820 TAACCCTGGCTCCAGAGGAC 60.618 60.000 22.13 0.00 46.30 3.85
233 234 0.118346 TTAACCCTGGCTCCAGAGGA 59.882 55.000 22.13 5.89 46.30 3.71
234 235 0.991920 TTTAACCCTGGCTCCAGAGG 59.008 55.000 17.08 16.91 46.30 3.69
235 236 2.239654 TCATTTAACCCTGGCTCCAGAG 59.760 50.000 17.08 6.69 46.30 3.35
236 237 2.274542 TCATTTAACCCTGGCTCCAGA 58.725 47.619 17.08 0.00 46.30 3.86
237 238 2.806945 TCATTTAACCCTGGCTCCAG 57.193 50.000 8.93 8.93 43.26 3.86
238 239 3.756082 AATCATTTAACCCTGGCTCCA 57.244 42.857 0.00 0.00 0.00 3.86
239 240 4.023291 TCAAATCATTTAACCCTGGCTCC 58.977 43.478 0.00 0.00 0.00 4.70
240 241 5.659440 TTCAAATCATTTAACCCTGGCTC 57.341 39.130 0.00 0.00 0.00 4.70
241 242 5.306678 TGTTTCAAATCATTTAACCCTGGCT 59.693 36.000 0.00 0.00 0.00 4.75
242 243 5.546526 TGTTTCAAATCATTTAACCCTGGC 58.453 37.500 0.00 0.00 0.00 4.85
243 244 7.877097 TGAATGTTTCAAATCATTTAACCCTGG 59.123 33.333 1.69 0.00 36.59 4.45
244 245 8.830201 TGAATGTTTCAAATCATTTAACCCTG 57.170 30.769 1.69 0.00 36.59 4.45
245 246 8.869109 TCTGAATGTTTCAAATCATTTAACCCT 58.131 29.630 1.69 0.00 39.58 4.34
246 247 9.487790 TTCTGAATGTTTCAAATCATTTAACCC 57.512 29.630 1.69 0.00 39.58 4.11
298 299 2.837591 TGCTTGCTAGTCCCATCACTTA 59.162 45.455 0.00 0.00 0.00 2.24
305 306 2.300967 CCCCTGCTTGCTAGTCCCA 61.301 63.158 0.00 0.00 0.00 4.37
306 307 2.592308 CCCCTGCTTGCTAGTCCC 59.408 66.667 0.00 0.00 0.00 4.46
310 311 3.112205 ATCCGCCCCTGCTTGCTAG 62.112 63.158 0.00 0.00 34.43 3.42
312 313 4.496336 GATCCGCCCCTGCTTGCT 62.496 66.667 0.00 0.00 34.43 3.91
313 314 3.106986 TAGATCCGCCCCTGCTTGC 62.107 63.158 0.00 0.00 34.43 4.01
314 315 1.070445 CTAGATCCGCCCCTGCTTG 59.930 63.158 0.00 0.00 34.43 4.01
315 316 2.143419 CCTAGATCCGCCCCTGCTT 61.143 63.158 0.00 0.00 34.43 3.91
316 317 2.525381 CCTAGATCCGCCCCTGCT 60.525 66.667 0.00 0.00 34.43 4.24
317 318 4.321966 GCCTAGATCCGCCCCTGC 62.322 72.222 0.00 0.00 0.00 4.85
318 319 3.631046 GGCCTAGATCCGCCCCTG 61.631 72.222 0.00 0.00 39.39 4.45
322 323 2.578714 CCTGAGGCCTAGATCCGCC 61.579 68.421 4.42 7.79 46.09 6.13
323 324 3.055580 CCTGAGGCCTAGATCCGC 58.944 66.667 4.42 0.00 0.00 5.54
324 325 3.055580 GCCTGAGGCCTAGATCCG 58.944 66.667 13.77 0.00 44.06 4.18
350 351 3.528370 CTCACGCCCCGGACCTAG 61.528 72.222 0.73 0.00 0.00 3.02
361 362 1.250840 AAAGGAAATGGGCCTCACGC 61.251 55.000 4.53 0.00 33.76 5.34
362 363 0.527565 CAAAGGAAATGGGCCTCACG 59.472 55.000 4.53 0.00 33.76 4.35
363 364 1.273327 CACAAAGGAAATGGGCCTCAC 59.727 52.381 4.53 0.00 33.76 3.51
364 365 1.631405 CACAAAGGAAATGGGCCTCA 58.369 50.000 4.53 0.00 33.76 3.86
365 366 0.897621 CCACAAAGGAAATGGGCCTC 59.102 55.000 4.53 0.00 41.22 4.70
366 367 0.545071 CCCACAAAGGAAATGGGCCT 60.545 55.000 4.53 0.00 46.52 5.19
367 368 1.982430 CCCACAAAGGAAATGGGCC 59.018 57.895 0.00 0.00 46.52 5.80
370 371 1.341080 ACAGCCCACAAAGGAAATGG 58.659 50.000 0.00 0.00 41.22 3.16
371 372 2.094545 GCTACAGCCCACAAAGGAAATG 60.095 50.000 0.00 0.00 41.22 2.32
372 373 2.171003 GCTACAGCCCACAAAGGAAAT 58.829 47.619 0.00 0.00 41.22 2.17
373 374 1.133637 TGCTACAGCCCACAAAGGAAA 60.134 47.619 0.00 0.00 41.18 3.13
374 375 0.476338 TGCTACAGCCCACAAAGGAA 59.524 50.000 0.00 0.00 41.18 3.36
375 376 0.476338 TTGCTACAGCCCACAAAGGA 59.524 50.000 0.00 0.00 41.18 3.36
376 377 1.327303 TTTGCTACAGCCCACAAAGG 58.673 50.000 0.00 0.00 41.18 3.11
377 378 3.451141 TTTTTGCTACAGCCCACAAAG 57.549 42.857 0.00 0.00 41.18 2.77
378 379 4.586841 AGTATTTTTGCTACAGCCCACAAA 59.413 37.500 0.00 0.00 41.18 2.83
379 380 4.022416 CAGTATTTTTGCTACAGCCCACAA 60.022 41.667 0.00 0.00 41.18 3.33
380 381 3.505680 CAGTATTTTTGCTACAGCCCACA 59.494 43.478 0.00 0.00 41.18 4.17
381 382 3.506067 ACAGTATTTTTGCTACAGCCCAC 59.494 43.478 0.00 0.00 41.18 4.61
382 383 3.761897 ACAGTATTTTTGCTACAGCCCA 58.238 40.909 0.00 0.00 41.18 5.36
383 384 4.201920 GCTACAGTATTTTTGCTACAGCCC 60.202 45.833 0.00 0.00 41.18 5.19
384 385 4.394920 TGCTACAGTATTTTTGCTACAGCC 59.605 41.667 0.00 0.00 41.18 4.85
385 386 5.545658 TGCTACAGTATTTTTGCTACAGC 57.454 39.130 0.00 0.00 42.50 4.40
386 387 7.008628 GCAATTGCTACAGTATTTTTGCTACAG 59.991 37.037 23.21 0.00 36.27 2.74
387 388 6.806249 GCAATTGCTACAGTATTTTTGCTACA 59.194 34.615 23.21 0.00 36.27 2.74
388 389 7.209595 GCAATTGCTACAGTATTTTTGCTAC 57.790 36.000 23.21 0.00 36.27 3.58
405 406 5.182001 CCCCTTCATATACTGTAGCAATTGC 59.818 44.000 23.05 23.05 42.49 3.56
406 407 5.707298 CCCCCTTCATATACTGTAGCAATTG 59.293 44.000 0.00 0.00 0.00 2.32
407 408 5.749032 GCCCCCTTCATATACTGTAGCAATT 60.749 44.000 0.00 0.00 0.00 2.32
408 409 4.263506 GCCCCCTTCATATACTGTAGCAAT 60.264 45.833 0.00 0.00 0.00 3.56
409 410 3.072476 GCCCCCTTCATATACTGTAGCAA 59.928 47.826 0.00 0.00 0.00 3.91
410 411 2.637872 GCCCCCTTCATATACTGTAGCA 59.362 50.000 0.00 0.00 0.00 3.49
411 412 2.027100 GGCCCCCTTCATATACTGTAGC 60.027 54.545 0.00 0.00 0.00 3.58
412 413 2.233922 CGGCCCCCTTCATATACTGTAG 59.766 54.545 0.00 0.00 0.00 2.74
413 414 2.253610 CGGCCCCCTTCATATACTGTA 58.746 52.381 0.00 0.00 0.00 2.74
414 415 1.056660 CGGCCCCCTTCATATACTGT 58.943 55.000 0.00 0.00 0.00 3.55
415 416 0.324943 CCGGCCCCCTTCATATACTG 59.675 60.000 0.00 0.00 0.00 2.74
416 417 0.840722 CCCGGCCCCCTTCATATACT 60.841 60.000 0.00 0.00 0.00 2.12
417 418 1.683441 CCCGGCCCCCTTCATATAC 59.317 63.158 0.00 0.00 0.00 1.47
418 419 1.540367 CCCCGGCCCCCTTCATATA 60.540 63.158 0.00 0.00 0.00 0.86
419 420 2.858974 CCCCGGCCCCCTTCATAT 60.859 66.667 0.00 0.00 0.00 1.78
438 439 4.891037 GATCCAGCCCAGCCCAGC 62.891 72.222 0.00 0.00 0.00 4.85
439 440 4.201122 GGATCCAGCCCAGCCCAG 62.201 72.222 6.95 0.00 0.00 4.45
460 461 0.392998 AATGTTCCCGTGCTAGCAGG 60.393 55.000 26.69 26.69 0.00 4.85
461 462 1.009829 GAATGTTCCCGTGCTAGCAG 58.990 55.000 20.03 12.18 0.00 4.24
462 463 0.739462 CGAATGTTCCCGTGCTAGCA 60.739 55.000 14.93 14.93 0.00 3.49
463 464 0.459585 TCGAATGTTCCCGTGCTAGC 60.460 55.000 8.10 8.10 0.00 3.42
464 465 1.927174 CTTCGAATGTTCCCGTGCTAG 59.073 52.381 0.00 0.00 0.00 3.42
465 466 1.274167 ACTTCGAATGTTCCCGTGCTA 59.726 47.619 0.00 0.00 0.00 3.49
466 467 0.034896 ACTTCGAATGTTCCCGTGCT 59.965 50.000 0.00 0.00 0.00 4.40
470 471 1.399727 GCACAACTTCGAATGTTCCCG 60.400 52.381 0.00 0.00 0.00 5.14
479 480 5.839621 AGTTTAAGTCTAGCACAACTTCGA 58.160 37.500 0.00 0.00 37.02 3.71
508 509 9.093970 GCTAAACCAGTAAAGAAACATGTTTTT 57.906 29.630 24.02 16.40 31.78 1.94
520 544 3.747193 CACATGCGCTAAACCAGTAAAG 58.253 45.455 9.73 0.00 0.00 1.85
522 546 1.466950 GCACATGCGCTAAACCAGTAA 59.533 47.619 9.73 0.00 0.00 2.24
549 573 2.509052 TCTGTCTGTTCGTTCACTGG 57.491 50.000 0.00 0.00 0.00 4.00
553 577 7.925993 ACATTATTTTTCTGTCTGTTCGTTCA 58.074 30.769 0.00 0.00 0.00 3.18
588 612 8.899771 CGGGGTTTACATTATTTTTCTATCTGT 58.100 33.333 0.00 0.00 0.00 3.41
610 637 4.394712 AACGAGCTGAAGCCGGGG 62.395 66.667 2.18 0.00 43.38 5.73
611 638 3.121030 CAACGAGCTGAAGCCGGG 61.121 66.667 2.18 0.00 43.38 5.73
613 640 2.720758 CGTCAACGAGCTGAAGCCG 61.721 63.158 0.00 10.36 43.38 5.52
671 698 4.637276 TCGTTTTGGTGATGTACTGATGT 58.363 39.130 0.00 0.00 0.00 3.06
672 699 5.605564 TTCGTTTTGGTGATGTACTGATG 57.394 39.130 0.00 0.00 0.00 3.07
673 700 6.435428 GTTTTCGTTTTGGTGATGTACTGAT 58.565 36.000 0.00 0.00 0.00 2.90
674 701 5.502706 CGTTTTCGTTTTGGTGATGTACTGA 60.503 40.000 0.00 0.00 38.65 3.41
675 702 4.668837 CGTTTTCGTTTTGGTGATGTACTG 59.331 41.667 0.00 0.00 38.65 2.74
676 703 4.787245 GCGTTTTCGTTTTGGTGATGTACT 60.787 41.667 0.00 0.00 46.03 2.73
677 704 3.419596 GCGTTTTCGTTTTGGTGATGTAC 59.580 43.478 0.00 0.00 46.03 2.90
678 705 3.064958 TGCGTTTTCGTTTTGGTGATGTA 59.935 39.130 0.00 0.00 46.03 2.29
721 748 1.133869 CGCGACAATTTTCGGGGTC 59.866 57.895 19.83 2.70 45.45 4.46
777 810 1.570979 GAGGAAAATGGAGGGGGTGAT 59.429 52.381 0.00 0.00 0.00 3.06
780 813 1.571773 CGGAGGAAAATGGAGGGGGT 61.572 60.000 0.00 0.00 0.00 4.95
789 825 2.171003 CAAGGGAAAGCGGAGGAAAAT 58.829 47.619 0.00 0.00 0.00 1.82
929 1007 2.586792 GGAGCGCAATGAGGGAGT 59.413 61.111 11.47 0.00 0.00 3.85
992 1070 2.969238 CCTGATCCATCGCGCCAC 60.969 66.667 0.00 0.00 0.00 5.01
993 1071 3.153781 TCCTGATCCATCGCGCCA 61.154 61.111 0.00 0.00 0.00 5.69
994 1072 2.663188 GTCCTGATCCATCGCGCC 60.663 66.667 0.00 0.00 0.00 6.53
1995 2088 5.441718 TGATTGGGTCTTTCTTAGCATCT 57.558 39.130 0.00 0.00 0.00 2.90
2019 2112 2.828868 TCCAGCAAACGCAGGAGT 59.171 55.556 0.00 0.00 39.91 3.85
2034 2127 7.121907 AGCTTATTCAAAGAATCAAAGACCTCC 59.878 37.037 6.49 0.00 0.00 4.30
2103 2196 3.118112 CCCTTGTCTGGCACTGAATATCT 60.118 47.826 0.00 0.00 38.22 1.98
2694 2787 3.026630 TCGTGGAACATCTCACTGAAC 57.973 47.619 0.00 0.00 44.52 3.18
2712 2805 0.388520 TGATCCACGCTGACTGTTCG 60.389 55.000 0.00 0.00 0.00 3.95
2751 2844 2.057922 ACAAGGTCACATGTCTCCCTT 58.942 47.619 12.36 12.36 35.95 3.95
3016 3115 5.233988 AGAACCGTTCTCTTGATTCTTCAG 58.766 41.667 8.03 0.00 34.07 3.02
3061 3172 7.776030 TGGTGAAAAATAAACTGGTCTCACTTA 59.224 33.333 0.00 0.00 33.94 2.24
3090 3201 2.092968 TCACAGGCCATCATTACAGGTC 60.093 50.000 5.01 0.00 0.00 3.85
3091 3202 1.915489 TCACAGGCCATCATTACAGGT 59.085 47.619 5.01 0.00 0.00 4.00
3092 3203 2.715749 TCACAGGCCATCATTACAGG 57.284 50.000 5.01 0.00 0.00 4.00
3094 3205 3.434024 CCTCATCACAGGCCATCATTACA 60.434 47.826 5.01 0.00 0.00 2.41
3095 3206 3.144506 CCTCATCACAGGCCATCATTAC 58.855 50.000 5.01 0.00 0.00 1.89
3096 3207 2.107031 CCCTCATCACAGGCCATCATTA 59.893 50.000 5.01 0.00 31.23 1.90
3097 3208 1.133575 CCCTCATCACAGGCCATCATT 60.134 52.381 5.01 0.00 31.23 2.57
3098 3209 0.477204 CCCTCATCACAGGCCATCAT 59.523 55.000 5.01 0.00 31.23 2.45
3099 3210 1.917495 CCCTCATCACAGGCCATCA 59.083 57.895 5.01 0.00 31.23 3.07
3100 3211 1.527844 GCCCTCATCACAGGCCATC 60.528 63.158 5.01 0.00 41.00 3.51
3101 3212 1.652187 ATGCCCTCATCACAGGCCAT 61.652 55.000 5.01 0.00 46.55 4.40
3226 3366 8.912614 AAAGAAGGTAGGAATAGGAGAAGTTA 57.087 34.615 0.00 0.00 0.00 2.24
3227 3367 7.680739 AGAAAGAAGGTAGGAATAGGAGAAGTT 59.319 37.037 0.00 0.00 0.00 2.66
3228 3368 7.125053 CAGAAAGAAGGTAGGAATAGGAGAAGT 59.875 40.741 0.00 0.00 0.00 3.01
3229 3369 7.125053 ACAGAAAGAAGGTAGGAATAGGAGAAG 59.875 40.741 0.00 0.00 0.00 2.85
3230 3370 6.960542 ACAGAAAGAAGGTAGGAATAGGAGAA 59.039 38.462 0.00 0.00 0.00 2.87
3231 3371 6.381420 CACAGAAAGAAGGTAGGAATAGGAGA 59.619 42.308 0.00 0.00 0.00 3.71
3232 3372 6.407525 CCACAGAAAGAAGGTAGGAATAGGAG 60.408 46.154 0.00 0.00 0.00 3.69
3233 3373 5.425539 CCACAGAAAGAAGGTAGGAATAGGA 59.574 44.000 0.00 0.00 0.00 2.94
3234 3374 5.425539 TCCACAGAAAGAAGGTAGGAATAGG 59.574 44.000 0.00 0.00 0.00 2.57
3235 3375 6.546428 TCCACAGAAAGAAGGTAGGAATAG 57.454 41.667 0.00 0.00 0.00 1.73
3236 3376 6.903534 AGATCCACAGAAAGAAGGTAGGAATA 59.096 38.462 0.00 0.00 0.00 1.75
3237 3377 5.728741 AGATCCACAGAAAGAAGGTAGGAAT 59.271 40.000 0.00 0.00 0.00 3.01
3238 3378 5.094387 AGATCCACAGAAAGAAGGTAGGAA 58.906 41.667 0.00 0.00 0.00 3.36
3239 3379 4.689062 AGATCCACAGAAAGAAGGTAGGA 58.311 43.478 0.00 0.00 0.00 2.94
3240 3380 6.325028 TGATAGATCCACAGAAAGAAGGTAGG 59.675 42.308 0.00 0.00 0.00 3.18
3241 3381 7.069331 ACTGATAGATCCACAGAAAGAAGGTAG 59.931 40.741 15.13 0.00 35.85 3.18
3261 3401 8.220898 ACTACATGGTCCTAGAGATACTGATA 57.779 38.462 0.00 0.00 0.00 2.15
3287 3427 4.207165 CCCAAGAAGTTCCTGAACAGAAA 58.793 43.478 12.21 0.00 43.47 2.52
3307 3447 2.160721 TAGATGTCCTCCAGTCACCC 57.839 55.000 0.00 0.00 0.00 4.61
3516 3659 4.871933 ACACAATTTCTTTCCATGGGAC 57.128 40.909 13.02 0.00 0.00 4.46
3517 3660 6.723515 TGATTACACAATTTCTTTCCATGGGA 59.276 34.615 13.02 0.00 0.00 4.37
3518 3661 6.813152 GTGATTACACAATTTCTTTCCATGGG 59.187 38.462 13.02 0.00 45.32 4.00
3519 3662 7.816945 GTGATTACACAATTTCTTTCCATGG 57.183 36.000 4.97 4.97 45.32 3.66
3563 3707 9.630098 CTACAACAATATCATGCAAAAGAAACT 57.370 29.630 0.00 0.00 0.00 2.66
3592 3736 7.167801 GCAAAGTTCCAGTCTATTCTACGATAC 59.832 40.741 0.00 0.00 0.00 2.24
3649 3793 3.410631 TTCAGCTTAACCCGACAATCA 57.589 42.857 0.00 0.00 0.00 2.57
3654 3798 1.804748 CTGGTTTCAGCTTAACCCGAC 59.195 52.381 19.81 0.00 43.55 4.79
3724 3868 6.210385 TGATCTGAGCAAGAGAAGAAACTAGT 59.790 38.462 0.00 0.00 38.67 2.57
3725 3869 6.629128 TGATCTGAGCAAGAGAAGAAACTAG 58.371 40.000 0.00 0.00 38.67 2.57
3726 3870 6.350864 CCTGATCTGAGCAAGAGAAGAAACTA 60.351 42.308 0.38 0.00 38.67 2.24
3853 4439 5.587844 AGAATTTCGGCTAGTACTTCGACTA 59.412 40.000 0.00 0.86 0.00 2.59
3854 4440 4.398673 AGAATTTCGGCTAGTACTTCGACT 59.601 41.667 0.00 0.13 0.00 4.18
3861 4447 3.858247 ACACCAGAATTTCGGCTAGTAC 58.142 45.455 7.05 0.00 0.00 2.73
3894 4480 7.399523 CCGCAGTAGATAATTTAAGTGACAAC 58.600 38.462 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.