Multiple sequence alignment - TraesCS6D01G108200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G108200 | chr6D | 100.000 | 4723 | 0 | 0 | 1 | 4723 | 72347956 | 72352678 | 0.000000e+00 | 8722.0 |
1 | TraesCS6D01G108200 | chr6D | 100.000 | 570 | 0 | 0 | 4975 | 5544 | 72352930 | 72353499 | 0.000000e+00 | 1053.0 |
2 | TraesCS6D01G108200 | chr6D | 94.872 | 546 | 26 | 2 | 5001 | 5544 | 426968641 | 426968096 | 0.000000e+00 | 852.0 |
3 | TraesCS6D01G108200 | chr6D | 98.204 | 167 | 3 | 0 | 2930 | 3096 | 203459102 | 203458936 | 5.430000e-75 | 292.0 |
4 | TraesCS6D01G108200 | chr6B | 91.944 | 1291 | 79 | 17 | 1651 | 2931 | 147011738 | 147013013 | 0.000000e+00 | 1784.0 |
5 | TraesCS6D01G108200 | chr6B | 88.451 | 1091 | 69 | 21 | 3151 | 4223 | 147013075 | 147014126 | 0.000000e+00 | 1264.0 |
6 | TraesCS6D01G108200 | chr6B | 84.977 | 639 | 36 | 22 | 858 | 1467 | 147010729 | 147011336 | 1.330000e-165 | 593.0 |
7 | TraesCS6D01G108200 | chr6B | 89.573 | 211 | 10 | 3 | 635 | 833 | 146998099 | 146998309 | 1.980000e-64 | 257.0 |
8 | TraesCS6D01G108200 | chr6B | 87.273 | 110 | 13 | 1 | 1556 | 1664 | 147011608 | 147011717 | 2.100000e-24 | 124.0 |
9 | TraesCS6D01G108200 | chr6A | 90.154 | 1300 | 85 | 21 | 1651 | 2933 | 89295658 | 89296931 | 0.000000e+00 | 1652.0 |
10 | TraesCS6D01G108200 | chr6A | 86.876 | 1402 | 104 | 27 | 311 | 1664 | 89294268 | 89295637 | 0.000000e+00 | 1496.0 |
11 | TraesCS6D01G108200 | chr6A | 91.290 | 930 | 55 | 12 | 3126 | 4055 | 89296985 | 89297888 | 0.000000e+00 | 1245.0 |
12 | TraesCS6D01G108200 | chr6A | 86.188 | 181 | 19 | 3 | 4054 | 4234 | 89299151 | 89299325 | 2.040000e-44 | 191.0 |
13 | TraesCS6D01G108200 | chr4D | 95.088 | 570 | 25 | 3 | 4976 | 5544 | 179896411 | 179896978 | 0.000000e+00 | 894.0 |
14 | TraesCS6D01G108200 | chr4D | 89.800 | 500 | 36 | 10 | 4228 | 4722 | 370672701 | 370672212 | 1.310000e-175 | 627.0 |
15 | TraesCS6D01G108200 | chr7D | 94.231 | 572 | 31 | 2 | 4975 | 5544 | 22994131 | 22994702 | 0.000000e+00 | 872.0 |
16 | TraesCS6D01G108200 | chr7D | 95.596 | 545 | 22 | 2 | 5001 | 5544 | 122820444 | 122819901 | 0.000000e+00 | 872.0 |
17 | TraesCS6D01G108200 | chr7D | 93.939 | 495 | 29 | 1 | 4230 | 4723 | 22993614 | 22994108 | 0.000000e+00 | 747.0 |
18 | TraesCS6D01G108200 | chr7D | 86.883 | 648 | 72 | 10 | 1 | 640 | 405909768 | 405910410 | 0.000000e+00 | 713.0 |
19 | TraesCS6D01G108200 | chr7D | 84.835 | 699 | 96 | 10 | 1 | 694 | 310773688 | 310774381 | 0.000000e+00 | 695.0 |
20 | TraesCS6D01G108200 | chr7D | 91.952 | 497 | 28 | 5 | 4227 | 4723 | 122820985 | 122820501 | 0.000000e+00 | 686.0 |
21 | TraesCS6D01G108200 | chr7D | 98.795 | 166 | 2 | 0 | 2931 | 3096 | 565469497 | 565469662 | 4.200000e-76 | 296.0 |
22 | TraesCS6D01G108200 | chr7D | 97.368 | 38 | 1 | 0 | 760 | 797 | 319055814 | 319055851 | 1.290000e-06 | 65.8 |
23 | TraesCS6D01G108200 | chrUn | 95.055 | 546 | 25 | 2 | 5001 | 5544 | 89953609 | 89954154 | 0.000000e+00 | 857.0 |
24 | TraesCS6D01G108200 | chr5D | 94.679 | 545 | 26 | 3 | 5002 | 5544 | 464293543 | 464294086 | 0.000000e+00 | 843.0 |
25 | TraesCS6D01G108200 | chr5D | 91.956 | 547 | 40 | 4 | 5001 | 5544 | 383625509 | 383624964 | 0.000000e+00 | 763.0 |
26 | TraesCS6D01G108200 | chr5D | 91.803 | 488 | 36 | 4 | 4238 | 4723 | 383626055 | 383625570 | 0.000000e+00 | 676.0 |
27 | TraesCS6D01G108200 | chr5D | 91.616 | 489 | 35 | 4 | 4236 | 4723 | 188343465 | 188343948 | 0.000000e+00 | 671.0 |
28 | TraesCS6D01G108200 | chr5D | 97.647 | 170 | 3 | 1 | 2928 | 3096 | 11004579 | 11004410 | 1.950000e-74 | 291.0 |
29 | TraesCS6D01G108200 | chr5D | 94.318 | 176 | 9 | 1 | 2921 | 3096 | 189021924 | 189021750 | 9.150000e-68 | 268.0 |
30 | TraesCS6D01G108200 | chr4A | 94.505 | 546 | 28 | 2 | 5001 | 5544 | 163307440 | 163306895 | 0.000000e+00 | 841.0 |
31 | TraesCS6D01G108200 | chr4A | 91.134 | 485 | 41 | 2 | 4241 | 4723 | 163307987 | 163307503 | 0.000000e+00 | 656.0 |
32 | TraesCS6D01G108200 | chr4A | 93.820 | 178 | 11 | 0 | 2919 | 3096 | 149031227 | 149031404 | 9.150000e-68 | 268.0 |
33 | TraesCS6D01G108200 | chr2B | 93.028 | 545 | 37 | 1 | 5001 | 5544 | 366597700 | 366597156 | 0.000000e+00 | 795.0 |
34 | TraesCS6D01G108200 | chr2B | 90.144 | 487 | 46 | 2 | 4238 | 4723 | 366598248 | 366597763 | 2.820000e-177 | 632.0 |
35 | TraesCS6D01G108200 | chr2D | 86.345 | 725 | 85 | 11 | 2 | 721 | 361147660 | 361146945 | 0.000000e+00 | 778.0 |
36 | TraesCS6D01G108200 | chr2D | 91.207 | 489 | 38 | 5 | 4238 | 4723 | 38173800 | 38173314 | 0.000000e+00 | 660.0 |
37 | TraesCS6D01G108200 | chr2D | 89.712 | 486 | 41 | 7 | 4239 | 4722 | 324887729 | 324887251 | 3.670000e-171 | 612.0 |
38 | TraesCS6D01G108200 | chr2D | 97.688 | 173 | 3 | 1 | 2929 | 3100 | 489387210 | 489387382 | 4.200000e-76 | 296.0 |
39 | TraesCS6D01G108200 | chr1A | 84.606 | 786 | 106 | 13 | 21 | 797 | 106204411 | 106205190 | 0.000000e+00 | 767.0 |
40 | TraesCS6D01G108200 | chr1A | 82.512 | 812 | 114 | 25 | 2 | 799 | 255675563 | 255674766 | 0.000000e+00 | 688.0 |
41 | TraesCS6D01G108200 | chr1D | 84.703 | 706 | 93 | 15 | 31 | 730 | 134689528 | 134688832 | 0.000000e+00 | 691.0 |
42 | TraesCS6D01G108200 | chr1D | 94.737 | 38 | 2 | 0 | 760 | 797 | 300303770 | 300303807 | 6.000000e-05 | 60.2 |
43 | TraesCS6D01G108200 | chr5A | 85.157 | 667 | 85 | 13 | 2 | 662 | 277524585 | 277525243 | 0.000000e+00 | 671.0 |
44 | TraesCS6D01G108200 | chr5A | 71.119 | 831 | 173 | 55 | 1 | 798 | 305457150 | 305456354 | 5.790000e-30 | 143.0 |
45 | TraesCS6D01G108200 | chr5A | 89.362 | 47 | 1 | 4 | 760 | 805 | 457685031 | 457685074 | 7.760000e-04 | 56.5 |
46 | TraesCS6D01G108200 | chr5B | 82.993 | 735 | 104 | 19 | 2 | 725 | 232614550 | 232615274 | 0.000000e+00 | 645.0 |
47 | TraesCS6D01G108200 | chr3D | 98.160 | 163 | 3 | 0 | 2934 | 3096 | 560113892 | 560113730 | 9.090000e-73 | 285.0 |
48 | TraesCS6D01G108200 | chr3D | 95.349 | 172 | 7 | 1 | 2925 | 3096 | 550509602 | 550509432 | 7.080000e-69 | 272.0 |
49 | TraesCS6D01G108200 | chr3B | 96.429 | 168 | 6 | 0 | 2929 | 3096 | 111133822 | 111133655 | 1.520000e-70 | 278.0 |
50 | TraesCS6D01G108200 | chr2A | 71.633 | 839 | 164 | 64 | 1 | 797 | 133857733 | 133858539 | 4.440000e-36 | 163.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G108200 | chr6D | 72347956 | 72353499 | 5543 | False | 4887.50 | 8722 | 100.00000 | 1 | 5544 | 2 | chr6D.!!$F1 | 5543 |
1 | TraesCS6D01G108200 | chr6D | 426968096 | 426968641 | 545 | True | 852.00 | 852 | 94.87200 | 5001 | 5544 | 1 | chr6D.!!$R2 | 543 |
2 | TraesCS6D01G108200 | chr6B | 147010729 | 147014126 | 3397 | False | 941.25 | 1784 | 88.16125 | 858 | 4223 | 4 | chr6B.!!$F2 | 3365 |
3 | TraesCS6D01G108200 | chr6A | 89294268 | 89299325 | 5057 | False | 1146.00 | 1652 | 88.62700 | 311 | 4234 | 4 | chr6A.!!$F1 | 3923 |
4 | TraesCS6D01G108200 | chr4D | 179896411 | 179896978 | 567 | False | 894.00 | 894 | 95.08800 | 4976 | 5544 | 1 | chr4D.!!$F1 | 568 |
5 | TraesCS6D01G108200 | chr7D | 22993614 | 22994702 | 1088 | False | 809.50 | 872 | 94.08500 | 4230 | 5544 | 2 | chr7D.!!$F5 | 1314 |
6 | TraesCS6D01G108200 | chr7D | 122819901 | 122820985 | 1084 | True | 779.00 | 872 | 93.77400 | 4227 | 5544 | 2 | chr7D.!!$R1 | 1317 |
7 | TraesCS6D01G108200 | chr7D | 405909768 | 405910410 | 642 | False | 713.00 | 713 | 86.88300 | 1 | 640 | 1 | chr7D.!!$F3 | 639 |
8 | TraesCS6D01G108200 | chr7D | 310773688 | 310774381 | 693 | False | 695.00 | 695 | 84.83500 | 1 | 694 | 1 | chr7D.!!$F1 | 693 |
9 | TraesCS6D01G108200 | chrUn | 89953609 | 89954154 | 545 | False | 857.00 | 857 | 95.05500 | 5001 | 5544 | 1 | chrUn.!!$F1 | 543 |
10 | TraesCS6D01G108200 | chr5D | 464293543 | 464294086 | 543 | False | 843.00 | 843 | 94.67900 | 5002 | 5544 | 1 | chr5D.!!$F2 | 542 |
11 | TraesCS6D01G108200 | chr5D | 383624964 | 383626055 | 1091 | True | 719.50 | 763 | 91.87950 | 4238 | 5544 | 2 | chr5D.!!$R3 | 1306 |
12 | TraesCS6D01G108200 | chr4A | 163306895 | 163307987 | 1092 | True | 748.50 | 841 | 92.81950 | 4241 | 5544 | 2 | chr4A.!!$R1 | 1303 |
13 | TraesCS6D01G108200 | chr2B | 366597156 | 366598248 | 1092 | True | 713.50 | 795 | 91.58600 | 4238 | 5544 | 2 | chr2B.!!$R1 | 1306 |
14 | TraesCS6D01G108200 | chr2D | 361146945 | 361147660 | 715 | True | 778.00 | 778 | 86.34500 | 2 | 721 | 1 | chr2D.!!$R3 | 719 |
15 | TraesCS6D01G108200 | chr1A | 106204411 | 106205190 | 779 | False | 767.00 | 767 | 84.60600 | 21 | 797 | 1 | chr1A.!!$F1 | 776 |
16 | TraesCS6D01G108200 | chr1A | 255674766 | 255675563 | 797 | True | 688.00 | 688 | 82.51200 | 2 | 799 | 1 | chr1A.!!$R1 | 797 |
17 | TraesCS6D01G108200 | chr1D | 134688832 | 134689528 | 696 | True | 691.00 | 691 | 84.70300 | 31 | 730 | 1 | chr1D.!!$R1 | 699 |
18 | TraesCS6D01G108200 | chr5A | 277524585 | 277525243 | 658 | False | 671.00 | 671 | 85.15700 | 2 | 662 | 1 | chr5A.!!$F1 | 660 |
19 | TraesCS6D01G108200 | chr5B | 232614550 | 232615274 | 724 | False | 645.00 | 645 | 82.99300 | 2 | 725 | 1 | chr5B.!!$F1 | 723 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
211 | 214 | 0.694105 | AAGGGGGTTTTGCTTGCCTT | 60.694 | 50.0 | 0.00 | 0.0 | 0.00 | 4.35 | F |
1318 | 1383 | 0.405585 | TGCCTTCCCTTCCCTTCTTG | 59.594 | 55.0 | 0.00 | 0.0 | 0.00 | 3.02 | F |
2830 | 3161 | 0.179073 | TGCTAAGAGATCCAAGGCGC | 60.179 | 55.0 | 0.00 | 0.0 | 0.00 | 6.53 | F |
3375 | 3739 | 0.250901 | GGAAGCCCAAAGAGCAGTGA | 60.251 | 55.0 | 0.00 | 0.0 | 0.00 | 3.41 | F |
4223 | 5873 | 0.613853 | AGTAACCGGCAGGAGCACTA | 60.614 | 55.0 | 10.86 | 0.0 | 44.61 | 2.74 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1322 | 1387 | 0.238289 | GAACACATCCAACACCAGCG | 59.762 | 55.000 | 0.0 | 0.0 | 0.00 | 5.18 | R |
3284 | 3648 | 0.250252 | TGTGCTCAAATCTGCCGTCA | 60.250 | 50.000 | 0.0 | 0.0 | 0.00 | 4.35 | R |
4234 | 5884 | 0.794473 | GGGCGTTAGTGTTTCCGAAG | 59.206 | 55.000 | 0.0 | 0.0 | 0.00 | 3.79 | R |
4345 | 5995 | 1.270412 | ACGAATTGTCCTACGTGGCAA | 60.270 | 47.619 | 0.0 | 0.0 | 37.58 | 4.52 | R |
5159 | 6830 | 3.081804 | AGAAAAATCGCCGGTTCAATCT | 58.918 | 40.909 | 1.9 | 0.0 | 0.00 | 2.40 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.592864 | TGGCAACACGGACAAGGT | 59.407 | 55.556 | 0.00 | 0.00 | 46.17 | 3.50 |
61 | 63 | 8.707796 | TCACTAACTAGCCTATACTAAGCATT | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
90 | 92 | 8.458843 | GGATAACATGTAAAGTAACAACAGCAT | 58.541 | 33.333 | 0.00 | 0.00 | 32.02 | 3.79 |
124 | 126 | 5.731591 | CAGGCTATGCATCAGAATATGAGA | 58.268 | 41.667 | 0.19 | 0.00 | 42.53 | 3.27 |
171 | 174 | 3.597255 | TGCAAGCATGAGAGAGAAAGAG | 58.403 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
191 | 194 | 4.780021 | AGAGTGGGCGATATAGGAATGATT | 59.220 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
211 | 214 | 0.694105 | AAGGGGGTTTTGCTTGCCTT | 60.694 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
234 | 238 | 1.845627 | CTCTGCTGAAAGGGGCTGGA | 61.846 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
235 | 239 | 1.210204 | TCTGCTGAAAGGGGCTGGAT | 61.210 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
277 | 281 | 1.290324 | GAGCAGCGTTGGTCTCAGA | 59.710 | 57.895 | 22.09 | 0.00 | 45.95 | 3.27 |
286 | 290 | 1.135344 | GTTGGTCTCAGAGTCTACCGC | 60.135 | 57.143 | 6.17 | 0.00 | 34.60 | 5.68 |
289 | 293 | 1.455248 | GTCTCAGAGTCTACCGCAGT | 58.545 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
403 | 409 | 1.266466 | GCTACGCTTTACAGACGGAC | 58.734 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
414 | 420 | 1.624813 | ACAGACGGACCGGGAAAATAA | 59.375 | 47.619 | 20.00 | 0.00 | 0.00 | 1.40 |
484 | 490 | 1.970640 | GGGGAAGGTTTCATGTTTGCT | 59.029 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
546 | 554 | 9.525409 | AAACAGTTCTTCTCATTTTTCTGATTG | 57.475 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
594 | 605 | 9.944663 | TCATCCGAGTTGCAATTTATTTTATAC | 57.055 | 29.630 | 0.59 | 0.00 | 0.00 | 1.47 |
705 | 721 | 1.195115 | TGTACCCAGAGAGGTGCATC | 58.805 | 55.000 | 0.00 | 0.00 | 46.11 | 3.91 |
721 | 737 | 1.879372 | GCATCTGTGGCTGACAAGTGA | 60.879 | 52.381 | 0.00 | 0.00 | 32.80 | 3.41 |
727 | 743 | 1.968540 | GGCTGACAAGTGAGGCCAC | 60.969 | 63.158 | 5.01 | 0.00 | 42.08 | 5.01 |
855 | 873 | 2.188817 | GACTAGATGGGGTCCACTGTT | 58.811 | 52.381 | 0.00 | 0.00 | 35.80 | 3.16 |
923 | 941 | 9.740710 | AATCTTAATTAGCCACTGTTCTAAGTT | 57.259 | 29.630 | 5.33 | 0.00 | 0.00 | 2.66 |
924 | 942 | 8.773404 | TCTTAATTAGCCACTGTTCTAAGTTC | 57.227 | 34.615 | 5.33 | 0.00 | 0.00 | 3.01 |
929 | 947 | 7.534723 | TTAGCCACTGTTCTAAGTTCTTCTA | 57.465 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1002 | 1042 | 7.556844 | ACAACGGAGTAAATTCTGTCTATGAT | 58.443 | 34.615 | 0.00 | 0.00 | 45.00 | 2.45 |
1192 | 1252 | 1.602605 | TTCGTCTGTGCCCGAGAGA | 60.603 | 57.895 | 0.00 | 0.00 | 34.16 | 3.10 |
1216 | 1276 | 3.603671 | CCGGGCGCTACCTACTCC | 61.604 | 72.222 | 7.64 | 0.00 | 39.10 | 3.85 |
1254 | 1317 | 2.303022 | TCCTCCTGCTTCAAGGTAACAG | 59.697 | 50.000 | 0.00 | 0.00 | 38.58 | 3.16 |
1305 | 1370 | 3.624861 | CAGTATCACACCTGATTGCCTTC | 59.375 | 47.826 | 0.00 | 0.00 | 38.21 | 3.46 |
1309 | 1374 | 0.779997 | ACACCTGATTGCCTTCCCTT | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1314 | 1379 | 1.006400 | CTGATTGCCTTCCCTTCCCTT | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
1317 | 1382 | 1.158007 | TTGCCTTCCCTTCCCTTCTT | 58.842 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1318 | 1383 | 0.405585 | TGCCTTCCCTTCCCTTCTTG | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1322 | 1387 | 2.026729 | CCTTCCCTTCCCTTCTTGTCTC | 60.027 | 54.545 | 0.00 | 0.00 | 0.00 | 3.36 |
1331 | 1396 | 1.541233 | CCTTCTTGTCTCGCTGGTGTT | 60.541 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
1350 | 1415 | 3.650647 | GGATGTGTTCCAAGCTCCA | 57.349 | 52.632 | 0.00 | 0.00 | 44.74 | 3.86 |
1387 | 1452 | 8.034058 | AGAGAAGTTTATTTCGGTGATTTCTG | 57.966 | 34.615 | 0.00 | 0.00 | 32.33 | 3.02 |
1451 | 1527 | 5.240403 | GCAATTTGATGGATAGAGGTCCTTC | 59.760 | 44.000 | 0.00 | 0.00 | 40.84 | 3.46 |
1466 | 1542 | 3.202097 | GTCCTTCTTCTCTTATGCTGCC | 58.798 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1471 | 1547 | 0.914644 | TTCTCTTATGCTGCCTGGCT | 59.085 | 50.000 | 21.03 | 1.26 | 0.00 | 4.75 |
1537 | 1614 | 5.371526 | CTGAGCAAATCCCTAGCTTAATCA | 58.628 | 41.667 | 0.00 | 0.00 | 39.02 | 2.57 |
1549 | 1626 | 7.071698 | TCCCTAGCTTAATCAGTGATGAATCTT | 59.928 | 37.037 | 11.08 | 0.00 | 0.00 | 2.40 |
1599 | 1881 | 2.036958 | TCGTGCGATTTTCCCATCAT | 57.963 | 45.000 | 0.00 | 0.00 | 0.00 | 2.45 |
1649 | 1932 | 9.443323 | TTGTTGTATTCGAAATTTATCCTCAGA | 57.557 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
1664 | 1947 | 5.310409 | TCCTCAGATTATCATTTCCCCAC | 57.690 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
1681 | 1995 | 3.609853 | CCCACTAGTAGCAAGCAAATCA | 58.390 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1698 | 2012 | 7.663827 | AGCAAATCATTTCTGAATGTTTCTCA | 58.336 | 30.769 | 0.00 | 0.00 | 42.61 | 3.27 |
1730 | 2049 | 9.996554 | ACCCAACCTTATATTTCTTTCTTTTTG | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
1736 | 2055 | 9.912634 | CCTTATATTTCTTTCTTTTTGTGCAGA | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 4.26 |
1740 | 2059 | 5.659440 | TTCTTTCTTTTTGTGCAGACCTT | 57.341 | 34.783 | 0.00 | 0.00 | 0.00 | 3.50 |
1757 | 2076 | 2.563086 | CTTCCATTTGTCGGCGTCGC | 62.563 | 60.000 | 9.22 | 9.22 | 36.13 | 5.19 |
1776 | 2095 | 0.462937 | CCACACCACTGAACCGTGAA | 60.463 | 55.000 | 0.00 | 0.00 | 37.06 | 3.18 |
1777 | 2096 | 0.937304 | CACACCACTGAACCGTGAAG | 59.063 | 55.000 | 0.00 | 0.00 | 37.06 | 3.02 |
1786 | 2105 | 3.173167 | AACCGTGAAGTCCCACCGG | 62.173 | 63.158 | 0.00 | 0.00 | 37.04 | 5.28 |
1841 | 2166 | 4.697756 | TGCGTGTACTGCCTGGCC | 62.698 | 66.667 | 17.53 | 0.00 | 0.00 | 5.36 |
2498 | 2829 | 7.977853 | GTCATTAACTCGGTTATTCTTCAGGTA | 59.022 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2499 | 2830 | 8.701895 | TCATTAACTCGGTTATTCTTCAGGTAT | 58.298 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2500 | 2831 | 9.326413 | CATTAACTCGGTTATTCTTCAGGTATT | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2501 | 2832 | 9.901172 | ATTAACTCGGTTATTCTTCAGGTATTT | 57.099 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2502 | 2833 | 9.729281 | TTAACTCGGTTATTCTTCAGGTATTTT | 57.271 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2505 | 2836 | 8.101419 | ACTCGGTTATTCTTCAGGTATTTTTCT | 58.899 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2506 | 2837 | 8.857694 | TCGGTTATTCTTCAGGTATTTTTCTT | 57.142 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2508 | 2839 | 9.908152 | CGGTTATTCTTCAGGTATTTTTCTTTT | 57.092 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
2599 | 2930 | 0.729116 | ATGATTTTCTGCCTCGCACG | 59.271 | 50.000 | 0.00 | 0.00 | 33.79 | 5.34 |
2678 | 3009 | 3.629142 | GGGGTAACTCATACTTGCAGT | 57.371 | 47.619 | 0.00 | 0.00 | 36.63 | 4.40 |
2679 | 3010 | 3.951663 | GGGGTAACTCATACTTGCAGTT | 58.048 | 45.455 | 0.00 | 0.00 | 36.63 | 3.16 |
2680 | 3011 | 5.093849 | GGGGTAACTCATACTTGCAGTTA | 57.906 | 43.478 | 0.00 | 0.00 | 36.63 | 2.24 |
2695 | 3026 | 4.101114 | TGCAGTTAGGGGTTCATTCTCTA | 58.899 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2704 | 3035 | 6.074648 | AGGGGTTCATTCTCTATCTAGTCTG | 58.925 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2767 | 3098 | 0.964358 | ACAGCTTGCCATGCCTTCTC | 60.964 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2782 | 3113 | 3.160269 | CCTTCTCTGTGGAAATTGCCTT | 58.840 | 45.455 | 3.49 | 0.00 | 0.00 | 4.35 |
2815 | 3146 | 4.191544 | GCATACCTGAAAGTGTGATGCTA | 58.808 | 43.478 | 0.00 | 0.00 | 36.22 | 3.49 |
2830 | 3161 | 0.179073 | TGCTAAGAGATCCAAGGCGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
2848 | 3179 | 3.760035 | CTCTACGCACCAGGCCGT | 61.760 | 66.667 | 10.31 | 10.31 | 40.31 | 5.68 |
2866 | 3197 | 3.364964 | GCCGTCTTTACCACATTGTTGAG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2872 | 3203 | 6.262273 | GTCTTTACCACATTGTTGAGAGGAAA | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
2936 | 3268 | 9.668497 | AGTGAAGTTTTCCTACAAATATACTCC | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2937 | 3269 | 8.890718 | GTGAAGTTTTCCTACAAATATACTCCC | 58.109 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2938 | 3270 | 8.832735 | TGAAGTTTTCCTACAAATATACTCCCT | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
2939 | 3271 | 9.327628 | GAAGTTTTCCTACAAATATACTCCCTC | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2940 | 3272 | 7.803131 | AGTTTTCCTACAAATATACTCCCTCC | 58.197 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2941 | 3273 | 7.404980 | AGTTTTCCTACAAATATACTCCCTCCA | 59.595 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
2943 | 3275 | 7.947782 | TTCCTACAAATATACTCCCTCCATT | 57.052 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2944 | 3276 | 7.554959 | TCCTACAAATATACTCCCTCCATTC | 57.445 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2945 | 3277 | 6.500751 | TCCTACAAATATACTCCCTCCATTCC | 59.499 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
2946 | 3278 | 6.502158 | CCTACAAATATACTCCCTCCATTCCT | 59.498 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
2949 | 3281 | 8.344939 | ACAAATATACTCCCTCCATTCCTAAA | 57.655 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2956 | 3288 | 9.860393 | ATACTCCCTCCATTCCTAAATATAAGT | 57.140 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2957 | 3289 | 8.208575 | ACTCCCTCCATTCCTAAATATAAGTC | 57.791 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2958 | 3290 | 8.019652 | ACTCCCTCCATTCCTAAATATAAGTCT | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2959 | 3291 | 8.814448 | TCCCTCCATTCCTAAATATAAGTCTT | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2960 | 3292 | 9.237706 | TCCCTCCATTCCTAAATATAAGTCTTT | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2961 | 3293 | 9.508642 | CCCTCCATTCCTAAATATAAGTCTTTC | 57.491 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
2979 | 3311 | 8.600449 | AGTCTTTCTAGAGATTTCAACAAGTG | 57.400 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2980 | 3312 | 8.424918 | AGTCTTTCTAGAGATTTCAACAAGTGA | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2981 | 3313 | 8.491950 | GTCTTTCTAGAGATTTCAACAAGTGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.67 |
2982 | 3314 | 8.424918 | TCTTTCTAGAGATTTCAACAAGTGACT | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 3.41 |
2983 | 3315 | 9.698309 | CTTTCTAGAGATTTCAACAAGTGACTA | 57.302 | 33.333 | 0.00 | 0.00 | 35.39 | 2.59 |
2984 | 3316 | 9.477484 | TTTCTAGAGATTTCAACAAGTGACTAC | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.73 |
2985 | 3317 | 8.178313 | TCTAGAGATTTCAACAAGTGACTACA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.74 |
2986 | 3318 | 8.807118 | TCTAGAGATTTCAACAAGTGACTACAT | 58.193 | 33.333 | 0.00 | 0.00 | 35.39 | 2.29 |
2988 | 3320 | 8.764524 | AGAGATTTCAACAAGTGACTACATAC | 57.235 | 34.615 | 0.00 | 0.00 | 35.39 | 2.39 |
2989 | 3321 | 7.542477 | AGAGATTTCAACAAGTGACTACATACG | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.06 |
2990 | 3322 | 6.590292 | AGATTTCAACAAGTGACTACATACGG | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 4.02 |
2991 | 3323 | 5.456548 | TTCAACAAGTGACTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 4.69 |
2992 | 3324 | 5.055642 | TCAACAAGTGACTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
2993 | 3325 | 4.763279 | TCAACAAGTGACTACATACGGAGA | 59.237 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
2994 | 3326 | 5.242171 | TCAACAAGTGACTACATACGGAGAA | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2995 | 3327 | 5.717078 | ACAAGTGACTACATACGGAGAAA | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2996 | 3328 | 6.092955 | ACAAGTGACTACATACGGAGAAAA | 57.907 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2997 | 3329 | 6.518493 | ACAAGTGACTACATACGGAGAAAAA | 58.482 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2998 | 3330 | 7.159372 | ACAAGTGACTACATACGGAGAAAAAT | 58.841 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2999 | 3331 | 7.117812 | ACAAGTGACTACATACGGAGAAAAATG | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
3000 | 3332 | 6.931838 | AGTGACTACATACGGAGAAAAATGA | 58.068 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3001 | 3333 | 7.383687 | AGTGACTACATACGGAGAAAAATGAA | 58.616 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3002 | 3334 | 8.041323 | AGTGACTACATACGGAGAAAAATGAAT | 58.959 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3003 | 3335 | 8.116753 | GTGACTACATACGGAGAAAAATGAATG | 58.883 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
3004 | 3336 | 8.038351 | TGACTACATACGGAGAAAAATGAATGA | 58.962 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3005 | 3337 | 8.786826 | ACTACATACGGAGAAAAATGAATGAA | 57.213 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3006 | 3338 | 9.396022 | ACTACATACGGAGAAAAATGAATGAAT | 57.604 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
3007 | 3339 | 9.869844 | CTACATACGGAGAAAAATGAATGAATC | 57.130 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3008 | 3340 | 8.511604 | ACATACGGAGAAAAATGAATGAATCT | 57.488 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
3009 | 3341 | 9.613428 | ACATACGGAGAAAAATGAATGAATCTA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
3013 | 3345 | 9.838339 | ACGGAGAAAAATGAATGAATCTATACT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
3037 | 3369 | 8.288208 | ACTCTAAAATATGTCTACGTACATCCG | 58.712 | 37.037 | 7.22 | 0.00 | 40.52 | 4.18 |
3038 | 3370 | 8.158169 | TCTAAAATATGTCTACGTACATCCGT | 57.842 | 34.615 | 7.22 | 0.00 | 44.50 | 4.69 |
3039 | 3371 | 9.271828 | TCTAAAATATGTCTACGTACATCCGTA | 57.728 | 33.333 | 7.22 | 0.00 | 42.00 | 4.02 |
3041 | 3373 | 8.738199 | AAAATATGTCTACGTACATCCGTATG | 57.262 | 34.615 | 7.22 | 0.00 | 41.95 | 2.39 |
3043 | 3375 | 5.762825 | ATGTCTACGTACATCCGTATGTT | 57.237 | 39.130 | 0.00 | 0.00 | 44.07 | 2.71 |
3044 | 3376 | 4.912214 | TGTCTACGTACATCCGTATGTTG | 58.088 | 43.478 | 0.00 | 0.00 | 44.07 | 3.33 |
3045 | 3377 | 4.395854 | TGTCTACGTACATCCGTATGTTGT | 59.604 | 41.667 | 0.00 | 1.65 | 44.07 | 3.32 |
3046 | 3378 | 5.584251 | TGTCTACGTACATCCGTATGTTGTA | 59.416 | 40.000 | 0.00 | 2.75 | 44.07 | 2.41 |
3047 | 3379 | 6.132056 | GTCTACGTACATCCGTATGTTGTAG | 58.868 | 44.000 | 18.80 | 18.80 | 44.07 | 2.74 |
3048 | 3380 | 4.970662 | ACGTACATCCGTATGTTGTAGT | 57.029 | 40.909 | 0.00 | 0.00 | 44.07 | 2.73 |
3049 | 3381 | 4.913376 | ACGTACATCCGTATGTTGTAGTC | 58.087 | 43.478 | 0.00 | 0.00 | 44.07 | 2.59 |
3050 | 3382 | 4.201950 | ACGTACATCCGTATGTTGTAGTCC | 60.202 | 45.833 | 0.00 | 0.00 | 44.07 | 3.85 |
3051 | 3383 | 4.201940 | CGTACATCCGTATGTTGTAGTCCA | 60.202 | 45.833 | 0.00 | 0.00 | 44.07 | 4.02 |
3052 | 3384 | 5.506815 | CGTACATCCGTATGTTGTAGTCCAT | 60.507 | 44.000 | 0.00 | 0.00 | 44.07 | 3.41 |
3053 | 3385 | 5.353394 | ACATCCGTATGTTGTAGTCCATT | 57.647 | 39.130 | 0.00 | 0.00 | 44.07 | 3.16 |
3054 | 3386 | 5.741011 | ACATCCGTATGTTGTAGTCCATTT | 58.259 | 37.500 | 0.00 | 0.00 | 44.07 | 2.32 |
3055 | 3387 | 5.584649 | ACATCCGTATGTTGTAGTCCATTTG | 59.415 | 40.000 | 0.00 | 0.00 | 44.07 | 2.32 |
3056 | 3388 | 5.408880 | TCCGTATGTTGTAGTCCATTTGA | 57.591 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3057 | 3389 | 5.795972 | TCCGTATGTTGTAGTCCATTTGAA | 58.204 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3058 | 3390 | 6.231951 | TCCGTATGTTGTAGTCCATTTGAAA | 58.768 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3059 | 3391 | 6.882140 | TCCGTATGTTGTAGTCCATTTGAAAT | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
3060 | 3392 | 6.966632 | CCGTATGTTGTAGTCCATTTGAAATG | 59.033 | 38.462 | 10.84 | 10.84 | 0.00 | 2.32 |
3061 | 3393 | 7.361713 | CCGTATGTTGTAGTCCATTTGAAATGT | 60.362 | 37.037 | 15.93 | 1.43 | 0.00 | 2.71 |
3062 | 3394 | 7.692291 | CGTATGTTGTAGTCCATTTGAAATGTC | 59.308 | 37.037 | 15.93 | 9.10 | 0.00 | 3.06 |
3063 | 3395 | 7.765695 | ATGTTGTAGTCCATTTGAAATGTCT | 57.234 | 32.000 | 15.93 | 14.81 | 0.00 | 3.41 |
3064 | 3396 | 8.862325 | ATGTTGTAGTCCATTTGAAATGTCTA | 57.138 | 30.769 | 15.93 | 13.97 | 0.00 | 2.59 |
3065 | 3397 | 8.684386 | TGTTGTAGTCCATTTGAAATGTCTAA | 57.316 | 30.769 | 15.93 | 4.89 | 0.00 | 2.10 |
3066 | 3398 | 9.126151 | TGTTGTAGTCCATTTGAAATGTCTAAA | 57.874 | 29.630 | 15.93 | 10.39 | 0.00 | 1.85 |
3067 | 3399 | 9.959749 | GTTGTAGTCCATTTGAAATGTCTAAAA | 57.040 | 29.630 | 15.93 | 14.59 | 0.00 | 1.52 |
3072 | 3404 | 9.136323 | AGTCCATTTGAAATGTCTAAAAAGACT | 57.864 | 29.630 | 15.93 | 14.21 | 39.41 | 3.24 |
3073 | 3405 | 9.750125 | GTCCATTTGAAATGTCTAAAAAGACTT | 57.250 | 29.630 | 15.93 | 0.00 | 39.41 | 3.01 |
3090 | 3422 | 8.959705 | AAAAGACTTATATTTAGGAACGGAGG | 57.040 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
3091 | 3423 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3092 | 3424 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3093 | 3425 | 6.494146 | AGACTTATATTTAGGAACGGAGGGAG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3094 | 3426 | 6.141790 | ACTTATATTTAGGAACGGAGGGAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3095 | 3427 | 7.300658 | ACTTATATTTAGGAACGGAGGGAGTA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3096 | 3428 | 7.232330 | ACTTATATTTAGGAACGGAGGGAGTAC | 59.768 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
3097 | 3429 | 2.905415 | TTAGGAACGGAGGGAGTACA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3098 | 3430 | 2.905415 | TAGGAACGGAGGGAGTACAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3099 | 3431 | 1.558233 | AGGAACGGAGGGAGTACAAG | 58.442 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3100 | 3432 | 1.076677 | AGGAACGGAGGGAGTACAAGA | 59.923 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
3101 | 3433 | 2.108970 | GGAACGGAGGGAGTACAAGAT | 58.891 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
3102 | 3434 | 3.053095 | AGGAACGGAGGGAGTACAAGATA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
3103 | 3435 | 3.318557 | GGAACGGAGGGAGTACAAGATAG | 59.681 | 52.174 | 0.00 | 0.00 | 0.00 | 2.08 |
3104 | 3436 | 3.666345 | ACGGAGGGAGTACAAGATAGT | 57.334 | 47.619 | 0.00 | 0.00 | 0.00 | 2.12 |
3105 | 3437 | 4.785346 | ACGGAGGGAGTACAAGATAGTA | 57.215 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
3106 | 3438 | 5.321934 | ACGGAGGGAGTACAAGATAGTAT | 57.678 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
3107 | 3439 | 6.445451 | ACGGAGGGAGTACAAGATAGTATA | 57.555 | 41.667 | 0.00 | 0.00 | 0.00 | 1.47 |
3108 | 3440 | 6.845908 | ACGGAGGGAGTACAAGATAGTATAA | 58.154 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3109 | 3441 | 6.714356 | ACGGAGGGAGTACAAGATAGTATAAC | 59.286 | 42.308 | 0.00 | 0.00 | 0.00 | 1.89 |
3110 | 3442 | 6.713903 | CGGAGGGAGTACAAGATAGTATAACA | 59.286 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
3111 | 3443 | 7.393796 | CGGAGGGAGTACAAGATAGTATAACAT | 59.606 | 40.741 | 0.00 | 0.00 | 0.00 | 2.71 |
3112 | 3444 | 9.091220 | GGAGGGAGTACAAGATAGTATAACATT | 57.909 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
3113 | 3445 | 9.915629 | GAGGGAGTACAAGATAGTATAACATTG | 57.084 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
3114 | 3446 | 8.871125 | AGGGAGTACAAGATAGTATAACATTGG | 58.129 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3115 | 3447 | 8.648693 | GGGAGTACAAGATAGTATAACATTGGT | 58.351 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
3124 | 3480 | 9.396022 | AGATAGTATAACATTGGTTGTTCTTGG | 57.604 | 33.333 | 0.00 | 0.00 | 45.55 | 3.61 |
3131 | 3487 | 6.798341 | AACATTGGTTGTTCTTGGGTGAACA | 61.798 | 40.000 | 6.05 | 6.05 | 45.55 | 3.18 |
3143 | 3499 | 4.365514 | TGGGTGAACAAGAGAAATGCTA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 3.49 |
3164 | 3520 | 4.779993 | ATAGAGGTCCTGGGTGATTTTC | 57.220 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
3174 | 3538 | 5.009210 | TCCTGGGTGATTTTCGTTTTAGTTG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3205 | 3569 | 7.395772 | TGCTTGGATTTATAACATTGGTTGAGA | 59.604 | 33.333 | 0.00 | 0.00 | 37.88 | 3.27 |
3206 | 3570 | 7.917505 | GCTTGGATTTATAACATTGGTTGAGAG | 59.082 | 37.037 | 0.00 | 0.00 | 37.88 | 3.20 |
3207 | 3571 | 8.877864 | TTGGATTTATAACATTGGTTGAGAGT | 57.122 | 30.769 | 0.00 | 0.00 | 37.88 | 3.24 |
3208 | 3572 | 8.877864 | TGGATTTATAACATTGGTTGAGAGTT | 57.122 | 30.769 | 0.00 | 0.00 | 37.88 | 3.01 |
3209 | 3573 | 8.739039 | TGGATTTATAACATTGGTTGAGAGTTG | 58.261 | 33.333 | 0.00 | 0.00 | 37.88 | 3.16 |
3210 | 3574 | 8.956426 | GGATTTATAACATTGGTTGAGAGTTGA | 58.044 | 33.333 | 0.00 | 0.00 | 37.88 | 3.18 |
3211 | 3575 | 9.994432 | GATTTATAACATTGGTTGAGAGTTGAG | 57.006 | 33.333 | 0.00 | 0.00 | 37.88 | 3.02 |
3224 | 3588 | 7.148557 | GGTTGAGAGTTGAGACTTATAGTTTGC | 60.149 | 40.741 | 0.00 | 0.00 | 35.88 | 3.68 |
3375 | 3739 | 0.250901 | GGAAGCCCAAAGAGCAGTGA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3414 | 3778 | 8.038351 | GCCTATCCTCCTCTTATTGAGTTATTC | 58.962 | 40.741 | 0.00 | 0.00 | 41.11 | 1.75 |
3434 | 3798 | 6.780457 | ATTCCCCATAAAAGTGTCATTCAG | 57.220 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
3446 | 3810 | 8.764524 | AAAGTGTCATTCAGATAGTGTACTTC | 57.235 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3447 | 3811 | 7.710676 | AGTGTCATTCAGATAGTGTACTTCT | 57.289 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3448 | 3812 | 7.767261 | AGTGTCATTCAGATAGTGTACTTCTC | 58.233 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
3449 | 3813 | 7.394641 | AGTGTCATTCAGATAGTGTACTTCTCA | 59.605 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
3450 | 3814 | 7.700234 | GTGTCATTCAGATAGTGTACTTCTCAG | 59.300 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
3451 | 3815 | 7.611855 | TGTCATTCAGATAGTGTACTTCTCAGA | 59.388 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
3452 | 3816 | 8.462811 | GTCATTCAGATAGTGTACTTCTCAGAA | 58.537 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
3453 | 3817 | 9.025041 | TCATTCAGATAGTGTACTTCTCAGAAA | 57.975 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3454 | 3818 | 9.645059 | CATTCAGATAGTGTACTTCTCAGAAAA | 57.355 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3458 | 3822 | 9.243637 | CAGATAGTGTACTTCTCAGAAAATAGC | 57.756 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
3459 | 3823 | 8.972127 | AGATAGTGTACTTCTCAGAAAATAGCA | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
3460 | 3824 | 8.934507 | ATAGTGTACTTCTCAGAAAATAGCAC | 57.065 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
3461 | 3825 | 6.998802 | AGTGTACTTCTCAGAAAATAGCACT | 58.001 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3464 | 3828 | 5.489792 | ACTTCTCAGAAAATAGCACTCCA | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
3479 | 3846 | 3.624861 | GCACTCCATCACTAACCAATCAG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
3522 | 3891 | 1.879380 | CTTGCACTGATTTTCCGTGGA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
3565 | 3934 | 4.776837 | CCTTCTCCATCACTAGCCAGATAT | 59.223 | 45.833 | 0.00 | 0.00 | 0.00 | 1.63 |
3656 | 4041 | 2.490903 | ACATTTCAGTTGATGCTGGAGC | 59.509 | 45.455 | 0.00 | 0.00 | 42.50 | 4.70 |
3726 | 4111 | 1.523154 | GCGGCAACAAGGGATCACAA | 61.523 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3784 | 4169 | 3.321497 | GCTAGGGATCGCAGATGTTAAG | 58.679 | 50.000 | 12.83 | 0.00 | 45.12 | 1.85 |
3829 | 4214 | 1.201414 | GACGAAAATGCAAACCCCGAT | 59.799 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
3898 | 4283 | 2.083774 | GTTTGGAATGAGTGGATCGCA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
4043 | 4428 | 1.072173 | AGTGCATGCTGTCACCTGTTA | 59.928 | 47.619 | 20.33 | 0.00 | 33.90 | 2.41 |
4059 | 5708 | 4.520492 | ACCTGTTAGAGCATGTTTTGGAAG | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4095 | 5744 | 6.088085 | GTGTTGAAAGAAATAGCAATCGTTGG | 59.912 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
4102 | 5751 | 4.481368 | AATAGCAATCGTTGGTGTAGGA | 57.519 | 40.909 | 11.10 | 0.00 | 42.14 | 2.94 |
4107 | 5756 | 3.364964 | GCAATCGTTGGTGTAGGACAAAG | 60.365 | 47.826 | 1.01 | 0.00 | 0.00 | 2.77 |
4136 | 5785 | 7.440198 | ACATAGGTGAGATGTATTGATGAGTG | 58.560 | 38.462 | 0.00 | 0.00 | 35.75 | 3.51 |
4223 | 5873 | 0.613853 | AGTAACCGGCAGGAGCACTA | 60.614 | 55.000 | 10.86 | 0.00 | 44.61 | 2.74 |
4225 | 5875 | 1.610554 | TAACCGGCAGGAGCACTACC | 61.611 | 60.000 | 10.86 | 0.00 | 44.61 | 3.18 |
4333 | 5983 | 3.059166 | GCACAAATCTTGGCACGAAAAT | 58.941 | 40.909 | 0.00 | 0.00 | 34.12 | 1.82 |
4335 | 5985 | 4.050553 | CACAAATCTTGGCACGAAAATGT | 58.949 | 39.130 | 0.00 | 1.16 | 34.12 | 2.71 |
4345 | 5995 | 4.872691 | TGGCACGAAAATGTTGATTTTGTT | 59.127 | 33.333 | 0.00 | 0.00 | 41.06 | 2.83 |
4377 | 6027 | 0.862490 | CAATTCGTGTGTGTGGCGTA | 59.138 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
4569 | 6222 | 1.568118 | ATTACTCCCCCAACCCACCG | 61.568 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4650 | 6303 | 4.111016 | AGTCGACGGCATTCGCGA | 62.111 | 61.111 | 3.71 | 3.71 | 43.89 | 5.87 |
5028 | 6696 | 3.284449 | GGTGGTTTCGCGGTGCTT | 61.284 | 61.111 | 6.13 | 0.00 | 0.00 | 3.91 |
5159 | 6830 | 1.299648 | CATCCGGGTTCTGCCTTGA | 59.700 | 57.895 | 0.00 | 0.00 | 37.43 | 3.02 |
5166 | 6837 | 2.795329 | GGGTTCTGCCTTGAGATTGAA | 58.205 | 47.619 | 0.00 | 0.00 | 37.43 | 2.69 |
5298 | 6970 | 8.492415 | ACCCTAGATCTAGTTATGTGCATTTA | 57.508 | 34.615 | 24.80 | 0.00 | 0.00 | 1.40 |
5496 | 7170 | 9.947669 | ACTATACTATAGACTTAGTTTGCGTTG | 57.052 | 33.333 | 6.78 | 0.00 | 34.35 | 4.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.738998 | CCATCAGTGGCCCCGCAA | 62.739 | 66.667 | 0.00 | 0.00 | 39.01 | 4.85 |
46 | 48 | 9.892130 | ATGTTATCCTAAATGCTTAGTATAGGC | 57.108 | 33.333 | 0.00 | 0.00 | 44.92 | 3.93 |
120 | 122 | 7.899178 | TTTTGCTACTTTGTTCGATATCTCA | 57.101 | 32.000 | 0.34 | 0.00 | 0.00 | 3.27 |
171 | 174 | 5.817816 | CCTTAATCATTCCTATATCGCCCAC | 59.182 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
191 | 194 | 0.189822 | AGGCAAGCAAAACCCCCTTA | 59.810 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
211 | 214 | 0.035056 | GCCCCTTTCAGCAGAGCTTA | 60.035 | 55.000 | 0.00 | 0.00 | 36.40 | 3.09 |
234 | 238 | 3.940221 | GAGTACGACTACACTCCTGACAT | 59.060 | 47.826 | 0.00 | 0.00 | 36.06 | 3.06 |
235 | 239 | 3.332919 | GAGTACGACTACACTCCTGACA | 58.667 | 50.000 | 0.00 | 0.00 | 36.06 | 3.58 |
277 | 281 | 1.178276 | CCTCTTCACTGCGGTAGACT | 58.822 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
414 | 420 | 5.675684 | AAAGCCGGGAAAATATTCACAAT | 57.324 | 34.783 | 2.18 | 0.00 | 39.01 | 2.71 |
474 | 480 | 2.813754 | GCCTCTAACACAGCAAACATGA | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
484 | 490 | 2.289631 | CCTGTCACATGCCTCTAACACA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
705 | 721 | 1.233285 | GCCTCACTTGTCAGCCACAG | 61.233 | 60.000 | 0.00 | 0.00 | 35.97 | 3.66 |
721 | 737 | 1.534959 | TGACTCAGCTCAGTGGCCT | 60.535 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
839 | 857 | 1.909302 | CACTAACAGTGGACCCCATCT | 59.091 | 52.381 | 0.00 | 0.00 | 42.35 | 2.90 |
855 | 873 | 6.022107 | TGCTAATCTAACCCCTAGACACTA | 57.978 | 41.667 | 0.00 | 0.00 | 39.52 | 2.74 |
1002 | 1042 | 6.203915 | ACATGTCGCTTTGTTTGTAATCTGTA | 59.796 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1109 | 1169 | 0.321671 | CCAGGCAAGAGTCTCGGAAA | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1254 | 1317 | 4.657436 | AGAACGATTACTGGAGACATCC | 57.343 | 45.455 | 0.00 | 0.00 | 46.87 | 3.51 |
1269 | 1332 | 6.404403 | GGTGTGATACTGATACTGAAGAACGA | 60.404 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
1305 | 1370 | 0.391793 | GCGAGACAAGAAGGGAAGGG | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1309 | 1374 | 0.832135 | ACCAGCGAGACAAGAAGGGA | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1314 | 1379 | 0.249868 | CCAACACCAGCGAGACAAGA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1317 | 1382 | 0.320683 | CATCCAACACCAGCGAGACA | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1318 | 1383 | 0.320771 | ACATCCAACACCAGCGAGAC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1322 | 1387 | 0.238289 | GAACACATCCAACACCAGCG | 59.762 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1343 | 1408 | 0.550914 | TTGTGGGACTTGTGGAGCTT | 59.449 | 50.000 | 0.00 | 0.00 | 0.00 | 3.74 |
1350 | 1415 | 3.933861 | AACTTCTCTTGTGGGACTTGT | 57.066 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1387 | 1452 | 2.351726 | CCTGCCGCAACTGTAAATAGAC | 59.648 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1451 | 1527 | 1.134159 | AGCCAGGCAGCATAAGAGAAG | 60.134 | 52.381 | 15.80 | 0.00 | 34.23 | 2.85 |
1492 | 1568 | 3.427863 | GCTGAGACAGAAATTGCAAAAGC | 59.572 | 43.478 | 1.71 | 0.00 | 32.44 | 3.51 |
1504 | 1580 | 2.354503 | GGATTTGCTCAGCTGAGACAGA | 60.355 | 50.000 | 41.20 | 31.04 | 44.74 | 3.41 |
1505 | 1581 | 2.008329 | GGATTTGCTCAGCTGAGACAG | 58.992 | 52.381 | 41.20 | 20.67 | 44.74 | 3.51 |
1537 | 1614 | 2.766263 | TCCAGCGGTAAGATTCATCACT | 59.234 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1549 | 1626 | 1.884579 | GGATATCGAGTTCCAGCGGTA | 59.115 | 52.381 | 10.70 | 0.00 | 31.99 | 4.02 |
1624 | 1906 | 9.613428 | ATCTGAGGATAAATTTCGAATACAACA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
1649 | 1932 | 6.763715 | TGCTACTAGTGGGGAAATGATAAT | 57.236 | 37.500 | 5.39 | 0.00 | 0.00 | 1.28 |
1653 | 1936 | 3.370527 | GCTTGCTACTAGTGGGGAAATGA | 60.371 | 47.826 | 5.39 | 0.00 | 0.00 | 2.57 |
1664 | 1947 | 7.312657 | TCAGAAATGATTTGCTTGCTACTAG | 57.687 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1698 | 2012 | 8.721133 | AAAGAAATATAAGGTTGGGTTGTTCT | 57.279 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
1702 | 2016 | 9.996554 | AAAAGAAAGAAATATAAGGTTGGGTTG | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 3.77 |
1730 | 2049 | 1.197721 | CGACAAATGGAAGGTCTGCAC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
1736 | 2055 | 0.953960 | GACGCCGACAAATGGAAGGT | 60.954 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1740 | 2059 | 3.115892 | GCGACGCCGACAAATGGA | 61.116 | 61.111 | 9.14 | 0.00 | 38.22 | 3.41 |
1757 | 2076 | 0.462937 | TTCACGGTTCAGTGGTGTGG | 60.463 | 55.000 | 3.62 | 0.00 | 42.10 | 4.17 |
1776 | 2095 | 4.082523 | CATCACGCCGGTGGGACT | 62.083 | 66.667 | 24.96 | 9.32 | 44.50 | 3.85 |
1777 | 2096 | 4.388499 | ACATCACGCCGGTGGGAC | 62.388 | 66.667 | 24.96 | 0.00 | 44.50 | 4.46 |
1786 | 2105 | 2.885644 | ACGCGATGGACATCACGC | 60.886 | 61.111 | 15.93 | 13.52 | 44.48 | 5.34 |
1913 | 2238 | 4.856607 | GGCTCGAACTCGCCGGAG | 62.857 | 72.222 | 5.05 | 0.00 | 46.13 | 4.63 |
2397 | 2722 | 1.392710 | AAGCACCGTATCCTCCTCCG | 61.393 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2516 | 2847 | 7.920682 | AGAATTCAGTTGGTTTGTTCATGTAAC | 59.079 | 33.333 | 8.44 | 0.00 | 38.67 | 2.50 |
2517 | 2848 | 7.920151 | CAGAATTCAGTTGGTTTGTTCATGTAA | 59.080 | 33.333 | 8.44 | 0.00 | 0.00 | 2.41 |
2518 | 2849 | 7.424803 | CAGAATTCAGTTGGTTTGTTCATGTA | 58.575 | 34.615 | 8.44 | 0.00 | 0.00 | 2.29 |
2519 | 2850 | 6.275335 | CAGAATTCAGTTGGTTTGTTCATGT | 58.725 | 36.000 | 8.44 | 0.00 | 0.00 | 3.21 |
2520 | 2851 | 5.176223 | GCAGAATTCAGTTGGTTTGTTCATG | 59.824 | 40.000 | 8.44 | 0.00 | 0.00 | 3.07 |
2523 | 2854 | 4.936891 | AGCAGAATTCAGTTGGTTTGTTC | 58.063 | 39.130 | 8.44 | 0.00 | 0.00 | 3.18 |
2529 | 2860 | 5.536161 | ACAATACAAGCAGAATTCAGTTGGT | 59.464 | 36.000 | 8.44 | 4.07 | 0.00 | 3.67 |
2599 | 2930 | 3.922171 | ATGTCTTCCAGAGGAATGTCC | 57.078 | 47.619 | 0.00 | 0.00 | 41.23 | 4.02 |
2657 | 2988 | 3.627395 | CTGCAAGTATGAGTTACCCCA | 57.373 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
2678 | 3009 | 7.726291 | CAGACTAGATAGAGAATGAACCCCTAA | 59.274 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
2679 | 3010 | 7.147105 | ACAGACTAGATAGAGAATGAACCCCTA | 60.147 | 40.741 | 0.00 | 0.00 | 0.00 | 3.53 |
2680 | 3011 | 6.074648 | CAGACTAGATAGAGAATGAACCCCT | 58.925 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2695 | 3026 | 6.407525 | GCACCCTGAAAAGATACAGACTAGAT | 60.408 | 42.308 | 0.00 | 0.00 | 36.38 | 1.98 |
2767 | 3098 | 5.822519 | TGTAGCTATAAGGCAATTTCCACAG | 59.177 | 40.000 | 0.00 | 0.00 | 34.17 | 3.66 |
2782 | 3113 | 7.154656 | CACTTTCAGGTATGCATGTAGCTATA | 58.845 | 38.462 | 10.16 | 0.00 | 45.94 | 1.31 |
2815 | 3146 | 0.980231 | AGAGGCGCCTTGGATCTCTT | 60.980 | 55.000 | 33.34 | 3.09 | 31.52 | 2.85 |
2830 | 3161 | 4.514577 | CGGCCTGGTGCGTAGAGG | 62.515 | 72.222 | 0.00 | 0.00 | 42.61 | 3.69 |
2848 | 3179 | 5.560722 | TCCTCTCAACAATGTGGTAAAGA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2883 | 3214 | 1.249407 | TTCCCGGTAAAACCATGCAC | 58.751 | 50.000 | 0.00 | 0.00 | 38.47 | 4.57 |
2884 | 3215 | 1.821753 | CATTCCCGGTAAAACCATGCA | 59.178 | 47.619 | 0.00 | 0.00 | 38.47 | 3.96 |
2885 | 3216 | 1.822371 | ACATTCCCGGTAAAACCATGC | 59.178 | 47.619 | 0.00 | 0.00 | 38.47 | 4.06 |
2886 | 3217 | 4.529109 | AAACATTCCCGGTAAAACCATG | 57.471 | 40.909 | 0.00 | 0.00 | 38.47 | 3.66 |
2890 | 3221 | 6.737118 | TCACTAAAAACATTCCCGGTAAAAC | 58.263 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2933 | 3265 | 8.442660 | AGACTTATATTTAGGAATGGAGGGAG | 57.557 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2934 | 3266 | 8.814448 | AAGACTTATATTTAGGAATGGAGGGA | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
2935 | 3267 | 9.508642 | GAAAGACTTATATTTAGGAATGGAGGG | 57.491 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2953 | 3285 | 9.050601 | CACTTGTTGAAATCTCTAGAAAGACTT | 57.949 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2954 | 3286 | 8.424918 | TCACTTGTTGAAATCTCTAGAAAGACT | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2955 | 3287 | 8.491950 | GTCACTTGTTGAAATCTCTAGAAAGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.01 |
2956 | 3288 | 8.424918 | AGTCACTTGTTGAAATCTCTAGAAAGA | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
2957 | 3289 | 8.600449 | AGTCACTTGTTGAAATCTCTAGAAAG | 57.400 | 34.615 | 0.00 | 0.00 | 35.39 | 2.62 |
2958 | 3290 | 9.477484 | GTAGTCACTTGTTGAAATCTCTAGAAA | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
2959 | 3291 | 8.638873 | TGTAGTCACTTGTTGAAATCTCTAGAA | 58.361 | 33.333 | 0.00 | 0.00 | 35.39 | 2.10 |
2960 | 3292 | 8.178313 | TGTAGTCACTTGTTGAAATCTCTAGA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
2961 | 3293 | 8.994429 | ATGTAGTCACTTGTTGAAATCTCTAG | 57.006 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
2962 | 3294 | 9.856488 | GTATGTAGTCACTTGTTGAAATCTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 35.39 | 2.43 |
2963 | 3295 | 7.542477 | CGTATGTAGTCACTTGTTGAAATCTCT | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.10 |
2964 | 3296 | 7.201444 | CCGTATGTAGTCACTTGTTGAAATCTC | 60.201 | 40.741 | 0.00 | 0.00 | 35.39 | 2.75 |
2965 | 3297 | 6.590292 | CCGTATGTAGTCACTTGTTGAAATCT | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 2.40 |
2966 | 3298 | 6.588756 | TCCGTATGTAGTCACTTGTTGAAATC | 59.411 | 38.462 | 0.00 | 0.00 | 35.39 | 2.17 |
2967 | 3299 | 6.460781 | TCCGTATGTAGTCACTTGTTGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 35.39 | 2.17 |
2968 | 3300 | 5.845103 | TCCGTATGTAGTCACTTGTTGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 35.39 | 2.69 |
2969 | 3301 | 5.242171 | TCTCCGTATGTAGTCACTTGTTGAA | 59.758 | 40.000 | 0.00 | 0.00 | 35.39 | 2.69 |
2970 | 3302 | 4.763279 | TCTCCGTATGTAGTCACTTGTTGA | 59.237 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2971 | 3303 | 5.055642 | TCTCCGTATGTAGTCACTTGTTG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
2972 | 3304 | 5.717078 | TTCTCCGTATGTAGTCACTTGTT | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2973 | 3305 | 5.717078 | TTTCTCCGTATGTAGTCACTTGT | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2974 | 3306 | 7.330946 | TCATTTTTCTCCGTATGTAGTCACTTG | 59.669 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2975 | 3307 | 7.383687 | TCATTTTTCTCCGTATGTAGTCACTT | 58.616 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2976 | 3308 | 6.931838 | TCATTTTTCTCCGTATGTAGTCACT | 58.068 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2977 | 3309 | 7.591006 | TTCATTTTTCTCCGTATGTAGTCAC | 57.409 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2978 | 3310 | 8.038351 | TCATTCATTTTTCTCCGTATGTAGTCA | 58.962 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2979 | 3311 | 8.420374 | TCATTCATTTTTCTCCGTATGTAGTC | 57.580 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2980 | 3312 | 8.786826 | TTCATTCATTTTTCTCCGTATGTAGT | 57.213 | 30.769 | 0.00 | 0.00 | 0.00 | 2.73 |
2981 | 3313 | 9.869844 | GATTCATTCATTTTTCTCCGTATGTAG | 57.130 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2982 | 3314 | 9.613428 | AGATTCATTCATTTTTCTCCGTATGTA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2983 | 3315 | 8.511604 | AGATTCATTCATTTTTCTCCGTATGT | 57.488 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2987 | 3319 | 9.838339 | AGTATAGATTCATTCATTTTTCTCCGT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
3011 | 3343 | 8.288208 | CGGATGTACGTAGACATATTTTAGAGT | 58.712 | 37.037 | 3.97 | 0.00 | 40.18 | 3.24 |
3012 | 3344 | 8.288208 | ACGGATGTACGTAGACATATTTTAGAG | 58.712 | 37.037 | 3.97 | 0.00 | 46.58 | 2.43 |
3013 | 3345 | 8.158169 | ACGGATGTACGTAGACATATTTTAGA | 57.842 | 34.615 | 3.97 | 0.00 | 46.58 | 2.10 |
3027 | 3359 | 4.201950 | GGACTACAACATACGGATGTACGT | 60.202 | 45.833 | 15.10 | 16.43 | 45.93 | 3.57 |
3028 | 3360 | 4.201940 | TGGACTACAACATACGGATGTACG | 60.202 | 45.833 | 15.10 | 11.07 | 45.93 | 3.67 |
3029 | 3361 | 5.252969 | TGGACTACAACATACGGATGTAC | 57.747 | 43.478 | 15.10 | 1.99 | 45.93 | 2.90 |
3030 | 3362 | 6.474140 | AATGGACTACAACATACGGATGTA | 57.526 | 37.500 | 15.10 | 0.00 | 45.93 | 2.29 |
3032 | 3364 | 5.815222 | TCAAATGGACTACAACATACGGATG | 59.185 | 40.000 | 5.94 | 5.94 | 39.16 | 3.51 |
3033 | 3365 | 5.984725 | TCAAATGGACTACAACATACGGAT | 58.015 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
3034 | 3366 | 5.408880 | TCAAATGGACTACAACATACGGA | 57.591 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3035 | 3367 | 6.489127 | TTTCAAATGGACTACAACATACGG | 57.511 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3036 | 3368 | 7.526608 | ACATTTCAAATGGACTACAACATACG | 58.473 | 34.615 | 14.70 | 0.00 | 0.00 | 3.06 |
3037 | 3369 | 8.730680 | AGACATTTCAAATGGACTACAACATAC | 58.269 | 33.333 | 14.70 | 0.00 | 0.00 | 2.39 |
3038 | 3370 | 8.862325 | AGACATTTCAAATGGACTACAACATA | 57.138 | 30.769 | 14.70 | 0.00 | 0.00 | 2.29 |
3039 | 3371 | 7.765695 | AGACATTTCAAATGGACTACAACAT | 57.234 | 32.000 | 14.70 | 0.00 | 0.00 | 2.71 |
3040 | 3372 | 8.684386 | TTAGACATTTCAAATGGACTACAACA | 57.316 | 30.769 | 14.70 | 1.25 | 0.00 | 3.33 |
3041 | 3373 | 9.959749 | TTTTAGACATTTCAAATGGACTACAAC | 57.040 | 29.630 | 14.70 | 0.00 | 0.00 | 3.32 |
3046 | 3378 | 9.136323 | AGTCTTTTTAGACATTTCAAATGGACT | 57.864 | 29.630 | 14.70 | 14.18 | 41.02 | 3.85 |
3047 | 3379 | 9.750125 | AAGTCTTTTTAGACATTTCAAATGGAC | 57.250 | 29.630 | 14.70 | 8.92 | 41.02 | 4.02 |
3064 | 3396 | 9.392259 | CCTCCGTTCCTAAATATAAGTCTTTTT | 57.608 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
3065 | 3397 | 7.991460 | CCCTCCGTTCCTAAATATAAGTCTTTT | 59.009 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
3066 | 3398 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3067 | 3399 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3068 | 3400 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3069 | 3401 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3070 | 3402 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3071 | 3403 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3072 | 3404 | 7.068702 | TGTACTCCCTCCGTTCCTAAATATAA | 58.931 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
3073 | 3405 | 6.613699 | TGTACTCCCTCCGTTCCTAAATATA | 58.386 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3074 | 3406 | 5.461327 | TGTACTCCCTCCGTTCCTAAATAT | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
3075 | 3407 | 4.870636 | TGTACTCCCTCCGTTCCTAAATA | 58.129 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3076 | 3408 | 3.716431 | TGTACTCCCTCCGTTCCTAAAT | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
3077 | 3409 | 3.173953 | TGTACTCCCTCCGTTCCTAAA | 57.826 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
3078 | 3410 | 2.905415 | TGTACTCCCTCCGTTCCTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3079 | 3411 | 2.309755 | TCTTGTACTCCCTCCGTTCCTA | 59.690 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3080 | 3412 | 1.076677 | TCTTGTACTCCCTCCGTTCCT | 59.923 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3081 | 3413 | 1.553706 | TCTTGTACTCCCTCCGTTCC | 58.446 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3082 | 3414 | 3.952967 | ACTATCTTGTACTCCCTCCGTTC | 59.047 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
3083 | 3415 | 3.978610 | ACTATCTTGTACTCCCTCCGTT | 58.021 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
3084 | 3416 | 3.666345 | ACTATCTTGTACTCCCTCCGT | 57.334 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
3085 | 3417 | 6.713903 | TGTTATACTATCTTGTACTCCCTCCG | 59.286 | 42.308 | 0.00 | 0.00 | 0.00 | 4.63 |
3086 | 3418 | 8.653036 | ATGTTATACTATCTTGTACTCCCTCC | 57.347 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3087 | 3419 | 9.915629 | CAATGTTATACTATCTTGTACTCCCTC | 57.084 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3088 | 3420 | 8.871125 | CCAATGTTATACTATCTTGTACTCCCT | 58.129 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
3089 | 3421 | 8.648693 | ACCAATGTTATACTATCTTGTACTCCC | 58.351 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3108 | 3440 | 3.025322 | TCACCCAAGAACAACCAATGT | 57.975 | 42.857 | 0.00 | 0.00 | 46.82 | 2.71 |
3109 | 3441 | 3.716601 | GTTCACCCAAGAACAACCAATG | 58.283 | 45.455 | 0.00 | 0.00 | 45.53 | 2.82 |
3119 | 3451 | 3.569701 | GCATTTCTCTTGTTCACCCAAGA | 59.430 | 43.478 | 3.83 | 3.83 | 46.43 | 3.02 |
3123 | 3479 | 6.349300 | TCTATAGCATTTCTCTTGTTCACCC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3124 | 3480 | 6.481644 | CCTCTATAGCATTTCTCTTGTTCACC | 59.518 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
3131 | 3487 | 5.306678 | CCAGGACCTCTATAGCATTTCTCTT | 59.693 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3143 | 3499 | 3.134804 | CGAAAATCACCCAGGACCTCTAT | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
3164 | 3520 | 4.915704 | TCCAAGCAAGAACAACTAAAACG | 58.084 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
3174 | 3538 | 8.034804 | ACCAATGTTATAAATCCAAGCAAGAAC | 58.965 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3205 | 3569 | 8.854614 | ATTTCAGCAAACTATAAGTCTCAACT | 57.145 | 30.769 | 0.00 | 0.00 | 37.32 | 3.16 |
3208 | 3572 | 9.944376 | ACTTATTTCAGCAAACTATAAGTCTCA | 57.056 | 29.630 | 0.00 | 0.00 | 37.42 | 3.27 |
3210 | 3574 | 8.669243 | GCACTTATTTCAGCAAACTATAAGTCT | 58.331 | 33.333 | 0.00 | 0.00 | 39.00 | 3.24 |
3211 | 3575 | 8.669243 | AGCACTTATTTCAGCAAACTATAAGTC | 58.331 | 33.333 | 0.00 | 0.00 | 39.00 | 3.01 |
3224 | 3588 | 4.438336 | CCACATCTGCAGCACTTATTTCAG | 60.438 | 45.833 | 9.47 | 0.00 | 0.00 | 3.02 |
3233 | 3597 | 1.747709 | ATCTTCCACATCTGCAGCAC | 58.252 | 50.000 | 9.47 | 0.00 | 0.00 | 4.40 |
3284 | 3648 | 0.250252 | TGTGCTCAAATCTGCCGTCA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3287 | 3651 | 2.283298 | ACTATGTGCTCAAATCTGCCG | 58.717 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
3414 | 3778 | 7.012704 | CACTATCTGAATGACACTTTTATGGGG | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 4.96 |
3434 | 3798 | 9.026074 | GTGCTATTTTCTGAGAAGTACACTATC | 57.974 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
3445 | 3809 | 5.188555 | AGTGATGGAGTGCTATTTTCTGAGA | 59.811 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3446 | 3810 | 5.426504 | AGTGATGGAGTGCTATTTTCTGAG | 58.573 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
3447 | 3811 | 5.426689 | AGTGATGGAGTGCTATTTTCTGA | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
3448 | 3812 | 6.037610 | GGTTAGTGATGGAGTGCTATTTTCTG | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
3449 | 3813 | 6.116126 | GGTTAGTGATGGAGTGCTATTTTCT | 58.884 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3450 | 3814 | 5.880332 | TGGTTAGTGATGGAGTGCTATTTTC | 59.120 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3451 | 3815 | 5.815581 | TGGTTAGTGATGGAGTGCTATTTT | 58.184 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
3452 | 3816 | 5.435686 | TGGTTAGTGATGGAGTGCTATTT | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3453 | 3817 | 5.435686 | TTGGTTAGTGATGGAGTGCTATT | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
3454 | 3818 | 5.130975 | TGATTGGTTAGTGATGGAGTGCTAT | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3455 | 3819 | 4.469586 | TGATTGGTTAGTGATGGAGTGCTA | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
3456 | 3820 | 3.264193 | TGATTGGTTAGTGATGGAGTGCT | 59.736 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3457 | 3821 | 3.609853 | TGATTGGTTAGTGATGGAGTGC | 58.390 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
3458 | 3822 | 4.194640 | CCTGATTGGTTAGTGATGGAGTG | 58.805 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3459 | 3823 | 3.200825 | CCCTGATTGGTTAGTGATGGAGT | 59.799 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3460 | 3824 | 3.813443 | CCCTGATTGGTTAGTGATGGAG | 58.187 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3461 | 3825 | 2.092429 | GCCCTGATTGGTTAGTGATGGA | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3464 | 3828 | 2.846206 | TCAGCCCTGATTGGTTAGTGAT | 59.154 | 45.455 | 0.00 | 0.00 | 34.14 | 3.06 |
3502 | 3871 | 1.879380 | TCCACGGAAAATCAGTGCAAG | 59.121 | 47.619 | 5.30 | 0.00 | 40.46 | 4.01 |
3522 | 3891 | 3.011032 | AGGGATGATGCTGAAAGAAGGTT | 59.989 | 43.478 | 0.00 | 0.00 | 34.07 | 3.50 |
3656 | 4041 | 1.938577 | CGCTTTCATGGTCCTCTCATG | 59.061 | 52.381 | 0.00 | 0.00 | 42.28 | 3.07 |
3726 | 4111 | 4.172512 | CCGCCTGCTGCTCCTCAT | 62.173 | 66.667 | 0.00 | 0.00 | 38.05 | 2.90 |
3898 | 4283 | 6.939163 | CGGATTCATCCTTCTCAAATATCCTT | 59.061 | 38.462 | 4.30 | 0.00 | 44.93 | 3.36 |
4038 | 4423 | 4.479619 | GCTTCCAAAACATGCTCTAACAG | 58.520 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
4043 | 4428 | 2.298163 | CAAGGCTTCCAAAACATGCTCT | 59.702 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
4059 | 5708 | 4.320608 | TCTTTCAACACCATTTCAAGGC | 57.679 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
4095 | 5744 | 8.004087 | TCACCTATGTATACTTTGTCCTACAC | 57.996 | 38.462 | 4.17 | 0.00 | 0.00 | 2.90 |
4136 | 5785 | 6.868622 | AGATCCAATGTACAGTTCTGTAGTC | 58.131 | 40.000 | 12.19 | 3.89 | 0.00 | 2.59 |
4234 | 5884 | 0.794473 | GGGCGTTAGTGTTTCCGAAG | 59.206 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4333 | 5983 | 3.238108 | ACGTGGCAAACAAAATCAACA | 57.762 | 38.095 | 0.00 | 0.00 | 0.00 | 3.33 |
4335 | 5985 | 3.632604 | TCCTACGTGGCAAACAAAATCAA | 59.367 | 39.130 | 0.00 | 0.00 | 35.26 | 2.57 |
4345 | 5995 | 1.270412 | ACGAATTGTCCTACGTGGCAA | 60.270 | 47.619 | 0.00 | 0.00 | 37.58 | 4.52 |
4377 | 6027 | 1.918293 | TGTGGGCGAACTCCCTCAT | 60.918 | 57.895 | 1.55 | 0.00 | 46.67 | 2.90 |
4393 | 6043 | 1.301479 | GGAGAGAAAACCGGCGTGT | 60.301 | 57.895 | 6.01 | 0.00 | 0.00 | 4.49 |
4569 | 6222 | 3.802948 | ATCGACTGAACTGGTATGGAC | 57.197 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
5159 | 6830 | 3.081804 | AGAAAAATCGCCGGTTCAATCT | 58.918 | 40.909 | 1.90 | 0.00 | 0.00 | 2.40 |
5166 | 6837 | 3.261981 | ACATCTAGAAAAATCGCCGGT | 57.738 | 42.857 | 1.90 | 0.00 | 0.00 | 5.28 |
5298 | 6970 | 3.954258 | GGCTGCCATTATCCTACACTTTT | 59.046 | 43.478 | 15.17 | 0.00 | 0.00 | 2.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.