Multiple sequence alignment - TraesCS6D01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G107000 chr6D 100.000 2468 0 0 1 2468 70633315 70635782 0.000000e+00 4558.0
1 TraesCS6D01G107000 chr6D 84.282 1037 103 33 789 1800 69933015 69932014 0.000000e+00 957.0
2 TraesCS6D01G107000 chr6D 89.333 75 7 1 2031 2105 69931441 69931368 2.610000e-15 93.5
3 TraesCS6D01G107000 chr6D 97.222 36 1 0 1981 2016 70635247 70635282 7.370000e-06 62.1
4 TraesCS6D01G107000 chr6D 97.222 36 1 0 1933 1968 70635295 70635330 7.370000e-06 62.1
5 TraesCS6D01G107000 chr6D 97.222 36 1 0 2056 2091 70635295 70635330 7.370000e-06 62.1
6 TraesCS6D01G107000 chr6D 97.222 36 1 0 1981 2016 70635370 70635405 7.370000e-06 62.1
7 TraesCS6D01G107000 chr6A 91.114 2172 133 25 317 2468 87906183 87908314 0.000000e+00 2887.0
8 TraesCS6D01G107000 chr6A 85.238 1050 93 34 789 1805 87653965 87652945 0.000000e+00 1024.0
9 TraesCS6D01G107000 chr6A 85.838 692 64 16 793 1469 180625881 180625209 0.000000e+00 704.0
10 TraesCS6D01G107000 chr6A 95.000 60 3 0 2048 2107 87907794 87907853 7.270000e-16 95.3
11 TraesCS6D01G107000 chr6A 100.000 36 0 0 1981 2016 87907802 87907837 1.580000e-07 67.6
12 TraesCS6D01G107000 chr6A 97.222 36 1 0 1933 1968 87907850 87907885 7.370000e-06 62.1
13 TraesCS6D01G107000 chr6A 97.222 36 1 0 2056 2091 87907850 87907885 7.370000e-06 62.1
14 TraesCS6D01G107000 chr6B 91.848 1239 58 22 762 1984 145043398 145044609 0.000000e+00 1688.0
15 TraesCS6D01G107000 chr6B 84.652 1049 102 30 789 1805 144920954 144919933 0.000000e+00 990.0
16 TraesCS6D01G107000 chr6B 93.460 474 31 0 996 1469 237416902 237416429 0.000000e+00 704.0
17 TraesCS6D01G107000 chr6B 82.025 395 45 17 2015 2398 145044517 145044896 1.840000e-81 313.0
18 TraesCS6D01G107000 chr6B 79.654 231 23 12 558 766 145043140 145043368 7.110000e-31 145.0
19 TraesCS6D01G107000 chr6B 100.000 36 0 0 1981 2016 145044558 145044593 1.580000e-07 67.6
20 TraesCS6D01G107000 chr6B 96.970 33 0 1 2074 2105 237415953 237415921 1.000000e-03 54.7
21 TraesCS6D01G107000 chr2B 91.978 536 36 6 992 1520 756674451 756673916 0.000000e+00 745.0
22 TraesCS6D01G107000 chr7A 90.546 476 45 0 994 1469 100063789 100064264 4.480000e-177 630.0
23 TraesCS6D01G107000 chrUn 97.682 302 5 2 1 301 375915291 375914991 3.640000e-143 518.0
24 TraesCS6D01G107000 chrUn 97.351 302 6 2 1 301 209390797 209390497 1.690000e-141 512.0
25 TraesCS6D01G107000 chr7D 97.674 301 4 3 1 299 118941348 118941647 4.710000e-142 514.0
26 TraesCS6D01G107000 chr7D 97.351 302 8 0 1 302 430680580 430680279 4.710000e-142 514.0
27 TraesCS6D01G107000 chr7D 97.667 300 6 1 1 299 618000566 618000267 4.710000e-142 514.0
28 TraesCS6D01G107000 chr2D 96.764 309 8 2 1 308 572448525 572448218 4.710000e-142 514.0
29 TraesCS6D01G107000 chr5D 97.351 302 6 1 1 300 184163417 184163718 1.690000e-141 512.0
30 TraesCS6D01G107000 chr5D 97.342 301 5 2 1 300 194196942 194197240 2.190000e-140 508.0
31 TraesCS6D01G107000 chr3D 96.440 309 10 1 1 308 330433987 330433679 2.190000e-140 508.0
32 TraesCS6D01G107000 chr3D 87.395 119 15 0 376 494 518543729 518543611 1.190000e-28 137.0
33 TraesCS6D01G107000 chr4D 81.313 198 32 5 300 494 497354288 497354483 3.290000e-34 156.0
34 TraesCS6D01G107000 chr3A 81.212 165 21 4 317 479 495258585 495258429 9.270000e-25 124.0
35 TraesCS6D01G107000 chr5B 81.457 151 27 1 372 521 406885079 406884929 3.330000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G107000 chr6D 70633315 70635782 2467 False 961.28 4558 97.77760 1 2468 5 chr6D.!!$F1 2467
1 TraesCS6D01G107000 chr6D 69931368 69933015 1647 True 525.25 957 86.80750 789 2105 2 chr6D.!!$R1 1316
2 TraesCS6D01G107000 chr6A 87652945 87653965 1020 True 1024.00 1024 85.23800 789 1805 1 chr6A.!!$R1 1016
3 TraesCS6D01G107000 chr6A 180625209 180625881 672 True 704.00 704 85.83800 793 1469 1 chr6A.!!$R2 676
4 TraesCS6D01G107000 chr6A 87906183 87908314 2131 False 634.82 2887 96.11160 317 2468 5 chr6A.!!$F1 2151
5 TraesCS6D01G107000 chr6B 144919933 144920954 1021 True 990.00 990 84.65200 789 1805 1 chr6B.!!$R1 1016
6 TraesCS6D01G107000 chr6B 145043140 145044896 1756 False 553.40 1688 88.38175 558 2398 4 chr6B.!!$F1 1840
7 TraesCS6D01G107000 chr6B 237415921 237416902 981 True 379.35 704 95.21500 996 2105 2 chr6B.!!$R2 1109
8 TraesCS6D01G107000 chr2B 756673916 756674451 535 True 745.00 745 91.97800 992 1520 1 chr2B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.037232 GGTGACTTGACGGAAGAGGG 60.037 60.0 3.67 0.0 35.42 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2121 0.09715 GAAATTCAGAACGAGCGGGC 59.903 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.265589 TTTCCTTTCCCACGAGTTCC 57.734 50.000 0.00 0.00 0.00 3.62
23 24 1.430992 TTCCTTTCCCACGAGTTCCT 58.569 50.000 0.00 0.00 0.00 3.36
24 25 0.685097 TCCTTTCCCACGAGTTCCTG 59.315 55.000 0.00 0.00 0.00 3.86
25 26 0.321653 CCTTTCCCACGAGTTCCTGG 60.322 60.000 0.00 0.00 0.00 4.45
26 27 0.685097 CTTTCCCACGAGTTCCTGGA 59.315 55.000 0.00 0.00 0.00 3.86
27 28 1.071699 CTTTCCCACGAGTTCCTGGAA 59.928 52.381 4.68 4.68 33.44 3.53
28 29 1.358152 TTCCCACGAGTTCCTGGAAT 58.642 50.000 13.07 1.78 30.40 3.01
29 30 0.613260 TCCCACGAGTTCCTGGAATG 59.387 55.000 13.07 6.60 0.00 2.67
30 31 0.324943 CCCACGAGTTCCTGGAATGT 59.675 55.000 13.07 9.03 0.00 2.71
31 32 1.676014 CCCACGAGTTCCTGGAATGTC 60.676 57.143 13.07 11.41 0.00 3.06
32 33 1.676014 CCACGAGTTCCTGGAATGTCC 60.676 57.143 13.07 0.00 36.96 4.02
33 34 1.001974 CACGAGTTCCTGGAATGTCCA 59.998 52.381 13.07 0.00 45.98 4.02
42 43 1.393603 TGGAATGTCCAAACAACGCA 58.606 45.000 0.00 0.00 45.00 5.24
43 44 1.751351 TGGAATGTCCAAACAACGCAA 59.249 42.857 0.00 0.00 45.00 4.85
44 45 2.166459 TGGAATGTCCAAACAACGCAAA 59.834 40.909 0.00 0.00 45.00 3.68
45 46 3.190874 GGAATGTCCAAACAACGCAAAA 58.809 40.909 0.00 0.00 39.30 2.44
46 47 3.619038 GGAATGTCCAAACAACGCAAAAA 59.381 39.130 0.00 0.00 39.30 1.94
47 48 4.493382 GGAATGTCCAAACAACGCAAAAAC 60.493 41.667 0.00 0.00 39.30 2.43
48 49 3.305398 TGTCCAAACAACGCAAAAACT 57.695 38.095 0.00 0.00 30.70 2.66
49 50 3.654414 TGTCCAAACAACGCAAAAACTT 58.346 36.364 0.00 0.00 30.70 2.66
50 51 3.430218 TGTCCAAACAACGCAAAAACTTG 59.570 39.130 0.00 0.00 30.70 3.16
51 52 2.413453 TCCAAACAACGCAAAAACTTGC 59.587 40.909 0.00 0.00 44.09 4.01
59 60 2.008752 GCAAAAACTTGCACACACCT 57.991 45.000 5.01 0.00 46.60 4.00
60 61 2.345876 GCAAAAACTTGCACACACCTT 58.654 42.857 5.01 0.00 46.60 3.50
61 62 2.094099 GCAAAAACTTGCACACACCTTG 59.906 45.455 5.01 0.00 46.60 3.61
62 63 2.008752 AAAACTTGCACACACCTTGC 57.991 45.000 0.00 0.00 40.63 4.01
63 64 0.179140 AAACTTGCACACACCTTGCG 60.179 50.000 0.00 0.00 43.34 4.85
64 65 2.353839 CTTGCACACACCTTGCGC 60.354 61.111 0.00 0.00 43.34 6.09
65 66 3.829272 CTTGCACACACCTTGCGCC 62.829 63.158 4.18 0.00 43.34 6.53
68 69 2.906897 CACACACCTTGCGCCCTT 60.907 61.111 4.18 0.00 0.00 3.95
69 70 1.599518 CACACACCTTGCGCCCTTA 60.600 57.895 4.18 0.00 0.00 2.69
70 71 1.149627 ACACACCTTGCGCCCTTAA 59.850 52.632 4.18 0.00 0.00 1.85
71 72 0.889186 ACACACCTTGCGCCCTTAAG 60.889 55.000 4.18 0.75 0.00 1.85
72 73 0.889186 CACACCTTGCGCCCTTAAGT 60.889 55.000 4.18 0.00 0.00 2.24
73 74 0.688487 ACACCTTGCGCCCTTAAGTA 59.312 50.000 4.18 0.00 0.00 2.24
74 75 1.280998 ACACCTTGCGCCCTTAAGTAT 59.719 47.619 4.18 0.00 0.00 2.12
75 76 1.940613 CACCTTGCGCCCTTAAGTATC 59.059 52.381 4.18 0.00 0.00 2.24
76 77 1.838077 ACCTTGCGCCCTTAAGTATCT 59.162 47.619 4.18 0.00 0.00 1.98
77 78 2.238898 ACCTTGCGCCCTTAAGTATCTT 59.761 45.455 4.18 0.00 0.00 2.40
78 79 2.872858 CCTTGCGCCCTTAAGTATCTTC 59.127 50.000 4.18 0.00 0.00 2.87
79 80 2.218953 TGCGCCCTTAAGTATCTTCG 57.781 50.000 4.18 0.00 0.00 3.79
80 81 1.752498 TGCGCCCTTAAGTATCTTCGA 59.248 47.619 4.18 0.00 0.00 3.71
81 82 2.364324 TGCGCCCTTAAGTATCTTCGAT 59.636 45.455 4.18 0.00 0.00 3.59
82 83 2.987821 GCGCCCTTAAGTATCTTCGATC 59.012 50.000 0.00 0.00 0.00 3.69
83 84 3.576648 CGCCCTTAAGTATCTTCGATCC 58.423 50.000 0.97 0.00 0.00 3.36
84 85 3.614390 CGCCCTTAAGTATCTTCGATCCC 60.614 52.174 0.97 0.00 0.00 3.85
85 86 3.323979 GCCCTTAAGTATCTTCGATCCCA 59.676 47.826 0.97 0.00 0.00 4.37
86 87 4.799917 GCCCTTAAGTATCTTCGATCCCAC 60.800 50.000 0.97 0.00 0.00 4.61
87 88 4.344102 CCCTTAAGTATCTTCGATCCCACA 59.656 45.833 0.97 0.00 0.00 4.17
88 89 5.163343 CCCTTAAGTATCTTCGATCCCACAA 60.163 44.000 0.97 0.00 0.00 3.33
89 90 6.346096 CCTTAAGTATCTTCGATCCCACAAA 58.654 40.000 0.97 0.00 0.00 2.83
90 91 6.821665 CCTTAAGTATCTTCGATCCCACAAAA 59.178 38.462 0.97 0.00 0.00 2.44
91 92 7.499232 CCTTAAGTATCTTCGATCCCACAAAAT 59.501 37.037 0.97 0.00 0.00 1.82
92 93 8.801882 TTAAGTATCTTCGATCCCACAAAATT 57.198 30.769 0.00 0.00 0.00 1.82
93 94 7.703058 AAGTATCTTCGATCCCACAAAATTT 57.297 32.000 0.00 0.00 0.00 1.82
94 95 7.321745 AGTATCTTCGATCCCACAAAATTTC 57.678 36.000 0.00 0.00 0.00 2.17
95 96 6.884295 AGTATCTTCGATCCCACAAAATTTCA 59.116 34.615 0.00 0.00 0.00 2.69
96 97 5.627499 TCTTCGATCCCACAAAATTTCAG 57.373 39.130 0.00 0.00 0.00 3.02
97 98 5.312895 TCTTCGATCCCACAAAATTTCAGA 58.687 37.500 0.00 0.00 0.00 3.27
98 99 5.945784 TCTTCGATCCCACAAAATTTCAGAT 59.054 36.000 0.00 0.00 0.00 2.90
99 100 6.434028 TCTTCGATCCCACAAAATTTCAGATT 59.566 34.615 0.00 0.00 0.00 2.40
100 101 6.588719 TCGATCCCACAAAATTTCAGATTT 57.411 33.333 0.00 0.00 0.00 2.17
101 102 6.991938 TCGATCCCACAAAATTTCAGATTTT 58.008 32.000 0.00 0.00 0.00 1.82
102 103 7.441017 TCGATCCCACAAAATTTCAGATTTTT 58.559 30.769 0.00 0.00 0.00 1.94
142 143 6.658188 TTTTTCGAATTTACTGTTCCCCAT 57.342 33.333 0.00 0.00 0.00 4.00
143 144 5.637006 TTTCGAATTTACTGTTCCCCATG 57.363 39.130 0.00 0.00 0.00 3.66
144 145 4.295141 TCGAATTTACTGTTCCCCATGT 57.705 40.909 0.00 0.00 0.00 3.21
145 146 4.658063 TCGAATTTACTGTTCCCCATGTT 58.342 39.130 0.00 0.00 0.00 2.71
146 147 5.806818 TCGAATTTACTGTTCCCCATGTTA 58.193 37.500 0.00 0.00 0.00 2.41
147 148 5.644636 TCGAATTTACTGTTCCCCATGTTAC 59.355 40.000 0.00 0.00 0.00 2.50
148 149 5.646360 CGAATTTACTGTTCCCCATGTTACT 59.354 40.000 0.00 0.00 0.00 2.24
149 150 6.819649 CGAATTTACTGTTCCCCATGTTACTA 59.180 38.462 0.00 0.00 0.00 1.82
150 151 7.497909 CGAATTTACTGTTCCCCATGTTACTAT 59.502 37.037 0.00 0.00 0.00 2.12
151 152 9.185680 GAATTTACTGTTCCCCATGTTACTATT 57.814 33.333 0.00 0.00 0.00 1.73
152 153 8.747538 ATTTACTGTTCCCCATGTTACTATTC 57.252 34.615 0.00 0.00 0.00 1.75
153 154 5.772393 ACTGTTCCCCATGTTACTATTCA 57.228 39.130 0.00 0.00 0.00 2.57
154 155 5.497474 ACTGTTCCCCATGTTACTATTCAC 58.503 41.667 0.00 0.00 0.00 3.18
155 156 4.850680 TGTTCCCCATGTTACTATTCACC 58.149 43.478 0.00 0.00 0.00 4.02
156 157 4.289934 TGTTCCCCATGTTACTATTCACCA 59.710 41.667 0.00 0.00 0.00 4.17
157 158 4.771114 TCCCCATGTTACTATTCACCAG 57.229 45.455 0.00 0.00 0.00 4.00
158 159 4.367166 TCCCCATGTTACTATTCACCAGA 58.633 43.478 0.00 0.00 0.00 3.86
159 160 4.163458 TCCCCATGTTACTATTCACCAGAC 59.837 45.833 0.00 0.00 0.00 3.51
160 161 4.080582 CCCCATGTTACTATTCACCAGACA 60.081 45.833 0.00 0.00 0.00 3.41
161 162 5.118990 CCCATGTTACTATTCACCAGACAG 58.881 45.833 0.00 0.00 0.00 3.51
162 163 5.338381 CCCATGTTACTATTCACCAGACAGT 60.338 44.000 0.00 0.00 0.00 3.55
163 164 5.812642 CCATGTTACTATTCACCAGACAGTC 59.187 44.000 0.00 0.00 0.00 3.51
164 165 6.398095 CATGTTACTATTCACCAGACAGTCA 58.602 40.000 2.66 0.00 0.00 3.41
165 166 6.413783 TGTTACTATTCACCAGACAGTCAA 57.586 37.500 2.66 0.00 0.00 3.18
166 167 6.822442 TGTTACTATTCACCAGACAGTCAAA 58.178 36.000 2.66 0.00 0.00 2.69
167 168 6.704493 TGTTACTATTCACCAGACAGTCAAAC 59.296 38.462 2.66 0.00 0.00 2.93
168 169 4.642429 ACTATTCACCAGACAGTCAAACC 58.358 43.478 2.66 0.00 0.00 3.27
169 170 2.341846 TTCACCAGACAGTCAAACCC 57.658 50.000 2.66 0.00 0.00 4.11
170 171 0.472471 TCACCAGACAGTCAAACCCC 59.528 55.000 2.66 0.00 0.00 4.95
171 172 0.474184 CACCAGACAGTCAAACCCCT 59.526 55.000 2.66 0.00 0.00 4.79
172 173 1.133792 CACCAGACAGTCAAACCCCTT 60.134 52.381 2.66 0.00 0.00 3.95
173 174 1.569072 ACCAGACAGTCAAACCCCTTT 59.431 47.619 2.66 0.00 0.00 3.11
174 175 1.956477 CCAGACAGTCAAACCCCTTTG 59.044 52.381 2.66 0.00 38.56 2.77
175 176 2.422803 CCAGACAGTCAAACCCCTTTGA 60.423 50.000 2.66 0.00 42.93 2.69
179 180 4.911901 TCAAACCCCTTTGACCGG 57.088 55.556 0.00 0.00 40.76 5.28
180 181 2.232622 TCAAACCCCTTTGACCGGA 58.767 52.632 9.46 0.00 40.76 5.14
181 182 0.179012 TCAAACCCCTTTGACCGGAC 60.179 55.000 9.46 1.07 40.76 4.79
182 183 1.228033 AAACCCCTTTGACCGGACG 60.228 57.895 9.46 0.00 0.00 4.79
183 184 2.685804 AAACCCCTTTGACCGGACGG 62.686 60.000 9.46 9.56 42.03 4.79
185 186 4.323477 CCCTTTGACCGGACGGCA 62.323 66.667 9.46 7.20 39.32 5.69
186 187 2.281208 CCTTTGACCGGACGGCAA 60.281 61.111 9.46 12.75 39.32 4.52
187 188 2.325082 CCTTTGACCGGACGGCAAG 61.325 63.158 9.46 10.27 39.32 4.01
188 189 2.281208 TTTGACCGGACGGCAAGG 60.281 61.111 9.46 0.00 39.32 3.61
189 190 3.835790 TTTGACCGGACGGCAAGGG 62.836 63.158 9.46 0.00 39.32 3.95
194 195 3.061848 CGGACGGCAAGGGCATTT 61.062 61.111 0.00 0.00 43.71 2.32
195 196 2.885113 GGACGGCAAGGGCATTTC 59.115 61.111 0.00 0.00 43.71 2.17
196 197 1.678970 GGACGGCAAGGGCATTTCT 60.679 57.895 0.00 0.00 43.71 2.52
197 198 1.508088 GACGGCAAGGGCATTTCTG 59.492 57.895 0.00 0.00 43.71 3.02
198 199 1.228552 ACGGCAAGGGCATTTCTGT 60.229 52.632 0.00 0.00 43.71 3.41
199 200 0.037590 ACGGCAAGGGCATTTCTGTA 59.962 50.000 0.00 0.00 43.71 2.74
200 201 1.173043 CGGCAAGGGCATTTCTGTAA 58.827 50.000 0.00 0.00 43.71 2.41
201 202 1.133025 CGGCAAGGGCATTTCTGTAAG 59.867 52.381 0.00 0.00 43.71 2.34
202 203 1.478105 GGCAAGGGCATTTCTGTAAGG 59.522 52.381 0.00 0.00 43.71 2.69
203 204 2.171003 GCAAGGGCATTTCTGTAAGGT 58.829 47.619 0.00 0.00 40.72 3.50
204 205 2.094545 GCAAGGGCATTTCTGTAAGGTG 60.095 50.000 0.00 0.00 40.72 4.00
205 206 3.420893 CAAGGGCATTTCTGTAAGGTGA 58.579 45.455 0.00 0.00 0.00 4.02
206 207 3.073274 AGGGCATTTCTGTAAGGTGAC 57.927 47.619 0.00 0.00 0.00 3.67
219 220 0.969894 AGGTGACTTGACGGAAGAGG 59.030 55.000 3.67 0.00 37.44 3.69
220 221 0.037232 GGTGACTTGACGGAAGAGGG 60.037 60.000 3.67 0.00 35.42 4.30
221 222 0.037232 GTGACTTGACGGAAGAGGGG 60.037 60.000 3.67 0.00 35.42 4.79
222 223 0.471211 TGACTTGACGGAAGAGGGGT 60.471 55.000 3.67 0.00 35.42 4.95
223 224 1.203087 TGACTTGACGGAAGAGGGGTA 60.203 52.381 3.67 0.00 35.42 3.69
224 225 2.108970 GACTTGACGGAAGAGGGGTAT 58.891 52.381 3.67 0.00 35.42 2.73
225 226 2.500504 GACTTGACGGAAGAGGGGTATT 59.499 50.000 3.67 0.00 35.42 1.89
226 227 2.910977 ACTTGACGGAAGAGGGGTATTT 59.089 45.455 3.67 0.00 35.42 1.40
227 228 3.329814 ACTTGACGGAAGAGGGGTATTTT 59.670 43.478 3.67 0.00 35.42 1.82
228 229 4.202535 ACTTGACGGAAGAGGGGTATTTTT 60.203 41.667 3.67 0.00 35.42 1.94
229 230 3.681593 TGACGGAAGAGGGGTATTTTTG 58.318 45.455 0.00 0.00 0.00 2.44
230 231 3.328343 TGACGGAAGAGGGGTATTTTTGA 59.672 43.478 0.00 0.00 0.00 2.69
231 232 3.939592 GACGGAAGAGGGGTATTTTTGAG 59.060 47.826 0.00 0.00 0.00 3.02
232 233 2.683362 CGGAAGAGGGGTATTTTTGAGC 59.317 50.000 0.00 0.00 0.00 4.26
233 234 3.697166 GGAAGAGGGGTATTTTTGAGCA 58.303 45.455 0.00 0.00 0.00 4.26
234 235 4.281657 GGAAGAGGGGTATTTTTGAGCAT 58.718 43.478 0.00 0.00 0.00 3.79
235 236 5.445964 GGAAGAGGGGTATTTTTGAGCATA 58.554 41.667 0.00 0.00 0.00 3.14
236 237 5.299531 GGAAGAGGGGTATTTTTGAGCATAC 59.700 44.000 0.00 0.00 0.00 2.39
237 238 4.793201 AGAGGGGTATTTTTGAGCATACC 58.207 43.478 0.97 0.97 43.04 2.73
238 239 4.478686 AGAGGGGTATTTTTGAGCATACCT 59.521 41.667 8.17 0.00 43.24 3.08
239 240 4.536765 AGGGGTATTTTTGAGCATACCTG 58.463 43.478 8.17 0.00 43.24 4.00
240 241 4.229582 AGGGGTATTTTTGAGCATACCTGA 59.770 41.667 8.17 0.00 43.24 3.86
241 242 4.953579 GGGGTATTTTTGAGCATACCTGAA 59.046 41.667 8.17 0.00 43.24 3.02
242 243 5.420739 GGGGTATTTTTGAGCATACCTGAAA 59.579 40.000 8.17 0.00 43.24 2.69
243 244 6.071051 GGGGTATTTTTGAGCATACCTGAAAA 60.071 38.462 8.17 0.00 43.24 2.29
244 245 7.364673 GGGGTATTTTTGAGCATACCTGAAAAT 60.365 37.037 8.17 0.00 43.24 1.82
245 246 8.040727 GGGTATTTTTGAGCATACCTGAAAATT 58.959 33.333 8.17 0.00 43.24 1.82
249 250 6.773976 TTTGAGCATACCTGAAAATTAGGG 57.226 37.500 0.00 0.00 39.71 3.53
250 251 4.792068 TGAGCATACCTGAAAATTAGGGG 58.208 43.478 0.00 0.00 39.71 4.79
251 252 3.566351 AGCATACCTGAAAATTAGGGGC 58.434 45.455 0.00 0.00 39.71 5.80
252 253 3.052944 AGCATACCTGAAAATTAGGGGCA 60.053 43.478 0.00 0.00 39.71 5.36
253 254 3.704061 GCATACCTGAAAATTAGGGGCAA 59.296 43.478 0.00 0.00 39.71 4.52
254 255 4.161377 GCATACCTGAAAATTAGGGGCAAA 59.839 41.667 0.00 0.00 39.71 3.68
255 256 5.163311 GCATACCTGAAAATTAGGGGCAAAT 60.163 40.000 0.00 0.00 39.71 2.32
256 257 4.824479 ACCTGAAAATTAGGGGCAAATG 57.176 40.909 0.00 0.00 39.71 2.32
257 258 3.055167 ACCTGAAAATTAGGGGCAAATGC 60.055 43.478 0.00 0.00 39.71 3.56
274 275 2.839098 CCAGGTGGTGGCTCAAGT 59.161 61.111 0.00 0.00 40.39 3.16
275 276 1.151450 CCAGGTGGTGGCTCAAGTT 59.849 57.895 0.00 0.00 40.39 2.66
276 277 0.400213 CCAGGTGGTGGCTCAAGTTA 59.600 55.000 0.00 0.00 40.39 2.24
277 278 1.611673 CCAGGTGGTGGCTCAAGTTAG 60.612 57.143 0.00 0.00 40.39 2.34
278 279 0.693049 AGGTGGTGGCTCAAGTTAGG 59.307 55.000 0.00 0.00 0.00 2.69
279 280 0.690762 GGTGGTGGCTCAAGTTAGGA 59.309 55.000 0.00 0.00 0.00 2.94
280 281 1.339151 GGTGGTGGCTCAAGTTAGGAG 60.339 57.143 0.00 0.00 35.47 3.69
281 282 0.984230 TGGTGGCTCAAGTTAGGAGG 59.016 55.000 0.00 0.00 32.96 4.30
282 283 1.276622 GGTGGCTCAAGTTAGGAGGA 58.723 55.000 0.00 0.00 32.96 3.71
283 284 1.840635 GGTGGCTCAAGTTAGGAGGAT 59.159 52.381 0.00 0.00 32.96 3.24
284 285 3.039011 GGTGGCTCAAGTTAGGAGGATA 58.961 50.000 0.00 0.00 32.96 2.59
285 286 3.454812 GGTGGCTCAAGTTAGGAGGATAA 59.545 47.826 0.00 0.00 32.96 1.75
286 287 4.080526 GGTGGCTCAAGTTAGGAGGATAAA 60.081 45.833 0.00 0.00 32.96 1.40
287 288 5.398012 GGTGGCTCAAGTTAGGAGGATAAAT 60.398 44.000 0.00 0.00 32.96 1.40
288 289 5.529060 GTGGCTCAAGTTAGGAGGATAAATG 59.471 44.000 0.00 0.00 32.96 2.32
289 290 5.066593 GGCTCAAGTTAGGAGGATAAATGG 58.933 45.833 0.00 0.00 32.96 3.16
290 291 5.163195 GGCTCAAGTTAGGAGGATAAATGGA 60.163 44.000 0.00 0.00 32.96 3.41
291 292 6.357367 GCTCAAGTTAGGAGGATAAATGGAA 58.643 40.000 0.00 0.00 32.96 3.53
292 293 7.001073 GCTCAAGTTAGGAGGATAAATGGAAT 58.999 38.462 0.00 0.00 32.96 3.01
293 294 7.503902 GCTCAAGTTAGGAGGATAAATGGAATT 59.496 37.037 0.00 0.00 33.19 2.17
294 295 8.752005 TCAAGTTAGGAGGATAAATGGAATTG 57.248 34.615 0.00 0.00 36.10 2.32
295 296 8.336235 TCAAGTTAGGAGGATAAATGGAATTGT 58.664 33.333 0.00 0.00 36.10 2.71
296 297 8.624776 CAAGTTAGGAGGATAAATGGAATTGTC 58.375 37.037 0.00 0.00 36.10 3.18
297 298 7.290813 AGTTAGGAGGATAAATGGAATTGTCC 58.709 38.462 0.00 0.00 45.21 4.02
298 299 5.066913 AGGAGGATAAATGGAATTGTCCC 57.933 43.478 0.00 0.00 44.23 4.46
299 300 4.733988 AGGAGGATAAATGGAATTGTCCCT 59.266 41.667 0.00 0.00 44.23 4.20
300 301 5.917087 AGGAGGATAAATGGAATTGTCCCTA 59.083 40.000 0.00 0.00 44.23 3.53
301 302 6.568040 AGGAGGATAAATGGAATTGTCCCTAT 59.432 38.462 0.00 0.00 44.23 2.57
302 303 7.744068 AGGAGGATAAATGGAATTGTCCCTATA 59.256 37.037 0.00 0.00 44.23 1.31
303 304 7.829706 GGAGGATAAATGGAATTGTCCCTATAC 59.170 40.741 0.00 0.00 44.23 1.47
304 305 8.287904 AGGATAAATGGAATTGTCCCTATACA 57.712 34.615 0.00 0.00 44.23 2.29
305 306 8.164070 AGGATAAATGGAATTGTCCCTATACAC 58.836 37.037 0.00 0.00 44.23 2.90
306 307 7.942341 GGATAAATGGAATTGTCCCTATACACA 59.058 37.037 0.00 0.00 44.23 3.72
307 308 9.349713 GATAAATGGAATTGTCCCTATACACAA 57.650 33.333 0.00 0.00 44.23 3.33
308 309 9.881773 ATAAATGGAATTGTCCCTATACACAAT 57.118 29.630 0.00 0.00 44.23 2.71
309 310 7.823745 AATGGAATTGTCCCTATACACAATC 57.176 36.000 0.00 0.00 44.23 2.67
310 311 6.320434 TGGAATTGTCCCTATACACAATCA 57.680 37.500 0.00 0.00 44.23 2.57
311 312 6.119536 TGGAATTGTCCCTATACACAATCAC 58.880 40.000 0.00 0.00 44.23 3.06
312 313 5.236478 GGAATTGTCCCTATACACAATCACG 59.764 44.000 0.00 0.00 41.42 4.35
313 314 5.607939 ATTGTCCCTATACACAATCACGA 57.392 39.130 0.00 0.00 38.59 4.35
314 315 5.408880 TTGTCCCTATACACAATCACGAA 57.591 39.130 0.00 0.00 0.00 3.85
315 316 5.006153 TGTCCCTATACACAATCACGAAG 57.994 43.478 0.00 0.00 0.00 3.79
324 325 7.993821 ATACACAATCACGAAGAAGATGTAG 57.006 36.000 0.00 0.00 0.00 2.74
364 365 8.582930 CGTTCATCGTAAATAAAAACATGCAAT 58.417 29.630 0.00 0.00 34.52 3.56
368 369 7.956508 TCGTAAATAAAAACATGCAATACGG 57.043 32.000 0.00 0.00 35.58 4.02
384 385 2.169832 ACGGAAGTCATGTGGAACTG 57.830 50.000 0.00 0.00 44.19 3.16
386 387 1.877680 CGGAAGTCATGTGGAACTGCA 60.878 52.381 0.00 0.00 38.04 4.41
394 395 3.754850 TCATGTGGAACTGCAAGATGAAG 59.245 43.478 0.00 0.00 38.04 3.02
395 396 1.881973 TGTGGAACTGCAAGATGAAGC 59.118 47.619 0.00 0.00 38.04 3.86
400 401 4.637534 TGGAACTGCAAGATGAAGCTATTC 59.362 41.667 0.00 0.00 37.43 1.75
401 402 4.637534 GGAACTGCAAGATGAAGCTATTCA 59.362 41.667 0.00 0.00 43.47 2.57
416 417 7.970061 TGAAGCTATTCATCAAAGGAAATTTCG 59.030 33.333 11.95 0.00 40.54 3.46
422 423 5.685841 TCATCAAAGGAAATTTCGAACGAC 58.314 37.500 11.95 0.00 0.00 4.34
437 438 3.179265 GACCGACCGTGCGTGATG 61.179 66.667 0.00 0.00 0.00 3.07
450 451 4.382457 CGTGCGTGATGAATTTGACAAAAT 59.618 37.500 4.41 0.00 37.61 1.82
468 469 5.856455 ACAAAATTCGTTCAAAATAGCTCCG 59.144 36.000 0.00 0.00 0.00 4.63
489 490 4.378616 CCGAACATGAACACGAAATTGAAC 59.621 41.667 0.00 0.00 0.00 3.18
494 495 7.164226 ACATGAACACGAAATTGAACATTTG 57.836 32.000 0.00 0.00 0.00 2.32
503 504 7.263826 CACGAAATTGAACATTTGCAATTAACG 59.736 33.333 16.37 16.37 42.17 3.18
505 506 8.000991 CGAAATTGAACATTTGCAATTAACGAA 58.999 29.630 14.36 0.00 42.17 3.85
506 507 8.986039 AAATTGAACATTTGCAATTAACGAAC 57.014 26.923 0.00 0.00 42.17 3.95
507 508 7.945033 ATTGAACATTTGCAATTAACGAACT 57.055 28.000 0.00 0.00 31.02 3.01
508 509 9.469807 AATTGAACATTTGCAATTAACGAACTA 57.530 25.926 0.00 0.00 41.46 2.24
509 510 7.845617 TGAACATTTGCAATTAACGAACTAC 57.154 32.000 0.00 0.00 0.00 2.73
510 511 7.418408 TGAACATTTGCAATTAACGAACTACA 58.582 30.769 0.00 0.00 0.00 2.74
511 512 7.915923 TGAACATTTGCAATTAACGAACTACAA 59.084 29.630 0.00 0.00 0.00 2.41
512 513 8.635877 AACATTTGCAATTAACGAACTACAAA 57.364 26.923 0.00 0.00 0.00 2.83
513 514 8.056710 ACATTTGCAATTAACGAACTACAAAC 57.943 30.769 0.00 0.00 0.00 2.93
514 515 7.168469 ACATTTGCAATTAACGAACTACAAACC 59.832 33.333 0.00 0.00 0.00 3.27
515 516 4.774586 TGCAATTAACGAACTACAAACCG 58.225 39.130 0.00 0.00 0.00 4.44
516 517 4.510711 TGCAATTAACGAACTACAAACCGA 59.489 37.500 0.00 0.00 0.00 4.69
517 518 5.179742 TGCAATTAACGAACTACAAACCGAT 59.820 36.000 0.00 0.00 0.00 4.18
518 519 6.081693 GCAATTAACGAACTACAAACCGATT 58.918 36.000 0.00 0.00 0.00 3.34
519 520 6.032042 GCAATTAACGAACTACAAACCGATTG 59.968 38.462 0.00 0.00 44.95 2.67
520 521 3.531262 AACGAACTACAAACCGATTGC 57.469 42.857 0.00 0.00 43.13 3.56
521 522 2.762745 ACGAACTACAAACCGATTGCT 58.237 42.857 0.00 0.00 43.13 3.91
522 523 2.735134 ACGAACTACAAACCGATTGCTC 59.265 45.455 0.00 0.00 43.13 4.26
523 524 2.222508 CGAACTACAAACCGATTGCTCG 60.223 50.000 1.43 0.00 43.13 5.03
548 549 8.604035 CGAATAATACTATAACATGGATGTGCC 58.396 37.037 0.00 0.00 41.61 5.01
550 551 9.453572 AATAATACTATAACATGGATGTGCCTG 57.546 33.333 0.00 0.00 41.61 4.85
572 601 6.156748 TGTAAGCACCATCGTGTAGATTAT 57.843 37.500 0.00 0.00 42.39 1.28
610 639 8.289939 AGTAGACGAGATTAGGTGTTAAATCA 57.710 34.615 0.00 0.00 35.07 2.57
642 671 2.949177 TGCAACCTCACATACAACCT 57.051 45.000 0.00 0.00 0.00 3.50
643 672 2.778299 TGCAACCTCACATACAACCTC 58.222 47.619 0.00 0.00 0.00 3.85
644 673 2.105649 TGCAACCTCACATACAACCTCA 59.894 45.455 0.00 0.00 0.00 3.86
645 674 2.484264 GCAACCTCACATACAACCTCAC 59.516 50.000 0.00 0.00 0.00 3.51
648 677 5.487433 CAACCTCACATACAACCTCACATA 58.513 41.667 0.00 0.00 0.00 2.29
649 678 5.086104 ACCTCACATACAACCTCACATAC 57.914 43.478 0.00 0.00 0.00 2.39
650 679 4.530553 ACCTCACATACAACCTCACATACA 59.469 41.667 0.00 0.00 0.00 2.29
652 681 5.351465 CCTCACATACAACCTCACATACAAC 59.649 44.000 0.00 0.00 0.00 3.32
653 682 5.242434 TCACATACAACCTCACATACAACC 58.758 41.667 0.00 0.00 0.00 3.77
654 683 5.000591 CACATACAACCTCACATACAACCA 58.999 41.667 0.00 0.00 0.00 3.67
658 687 3.074412 CAACCTCACATACAACCAGTCC 58.926 50.000 0.00 0.00 0.00 3.85
659 688 2.334977 ACCTCACATACAACCAGTCCA 58.665 47.619 0.00 0.00 0.00 4.02
660 689 2.038557 ACCTCACATACAACCAGTCCAC 59.961 50.000 0.00 0.00 0.00 4.02
662 691 3.513912 CCTCACATACAACCAGTCCACTA 59.486 47.826 0.00 0.00 0.00 2.74
664 713 3.057104 TCACATACAACCAGTCCACTACG 60.057 47.826 0.00 0.00 0.00 3.51
691 740 4.935352 TTGCATCACTTAAGTTTGGCTT 57.065 36.364 5.07 0.00 41.05 4.35
692 741 4.241590 TGCATCACTTAAGTTTGGCTTG 57.758 40.909 5.07 0.00 38.05 4.01
693 742 3.636300 TGCATCACTTAAGTTTGGCTTGT 59.364 39.130 5.07 0.00 38.05 3.16
724 773 4.202111 TGCCGATTCAGTCATTTCTATCGA 60.202 41.667 0.00 0.00 37.62 3.59
737 786 6.258727 TCATTTCTATCGAGTTTGGCTCAATC 59.741 38.462 0.00 0.00 44.33 2.67
772 856 9.139174 CAAACAATACAATTTCATCCTGTTACC 57.861 33.333 0.00 0.00 0.00 2.85
913 1006 4.913335 AATACTCCGCAAATCTCGTCTA 57.087 40.909 0.00 0.00 0.00 2.59
988 1083 2.027192 TCTCCACTTCCCGAATCCTTTG 60.027 50.000 0.00 0.00 0.00 2.77
1046 1155 2.603652 GGAAGGGGAAGAAGGGCGT 61.604 63.158 0.00 0.00 0.00 5.68
1272 1381 0.035458 AGGACAACAAGAAGAGCCGG 59.965 55.000 0.00 0.00 0.00 6.13
1477 1597 1.087501 GAAGGCTTAGGTTCCTTGCG 58.912 55.000 0.00 0.00 42.37 4.85
1497 1620 1.413077 GTAGTTAGGCTGTAGCTGGGG 59.587 57.143 0.00 0.00 41.70 4.96
1517 1643 1.745087 GTGTATGGATGGGTGTGCTTG 59.255 52.381 0.00 0.00 0.00 4.01
1668 1804 4.668576 TGTCGATTTGCTCAGAATTGTC 57.331 40.909 0.00 0.00 0.00 3.18
1801 1969 2.905085 TCCCGCCCCAATTTCGTATATA 59.095 45.455 0.00 0.00 0.00 0.86
1866 2065 1.745115 CTCCAATTTCGCGCCCAGA 60.745 57.895 0.00 0.00 0.00 3.86
1867 2066 1.302913 TCCAATTTCGCGCCCAGAA 60.303 52.632 0.00 0.00 0.00 3.02
1868 2067 0.891449 TCCAATTTCGCGCCCAGAAA 60.891 50.000 10.66 10.66 41.17 2.52
1869 2068 0.732538 CCAATTTCGCGCCCAGAAAC 60.733 55.000 10.50 0.00 39.96 2.78
1870 2069 0.039617 CAATTTCGCGCCCAGAAACA 60.040 50.000 10.50 0.00 39.96 2.83
1871 2070 0.240945 AATTTCGCGCCCAGAAACAG 59.759 50.000 10.50 0.00 39.96 3.16
1922 2121 4.631813 CGGGGAGACTGAAAACTCTATTTG 59.368 45.833 0.00 0.00 34.11 2.32
1960 2159 1.600916 AGTTCTGGGAGTTTGGCGC 60.601 57.895 0.00 0.00 0.00 6.53
1976 2175 1.262166 GCGCGCAACTGAAAACTGTC 61.262 55.000 29.10 0.00 0.00 3.51
2025 2588 0.174845 CGGGCAACTGGACGAGATTA 59.825 55.000 0.00 0.00 40.24 1.75
2067 2630 2.069273 CCGCTCGTTCTGAAATTCAGT 58.931 47.619 20.91 0.00 44.58 3.41
2147 2710 1.961277 CCCGCTTCAGTTTCGTGCT 60.961 57.895 0.00 0.00 0.00 4.40
2224 2795 0.885196 TGGGCGCACAACTAATTTCC 59.115 50.000 11.60 0.00 0.00 3.13
2228 2799 1.198178 GCGCACAACTAATTTCCGGAA 59.802 47.619 14.35 14.35 0.00 4.30
2268 2839 6.187682 TGGAGGAAGGAAATAATCAAAGACC 58.812 40.000 0.00 0.00 0.00 3.85
2287 2858 6.078456 AGACCTGGTGAATTCCATATTCAA 57.922 37.500 2.82 0.00 39.43 2.69
2373 2944 3.771160 GACATGTCGGAGCGGGGT 61.771 66.667 10.69 0.00 0.00 4.95
2410 2982 5.183904 GCACTATTCCTTGGTCACATTTTCT 59.816 40.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.953648 GGAACTCGTGGGAAAGGAAAAA 59.046 45.455 0.00 0.00 0.00 1.94
2 3 2.173996 AGGAACTCGTGGGAAAGGAAAA 59.826 45.455 0.00 0.00 0.00 2.29
3 4 1.772453 AGGAACTCGTGGGAAAGGAAA 59.228 47.619 0.00 0.00 0.00 3.13
4 5 1.071699 CAGGAACTCGTGGGAAAGGAA 59.928 52.381 0.00 0.00 34.60 3.36
5 6 0.685097 CAGGAACTCGTGGGAAAGGA 59.315 55.000 0.00 0.00 34.60 3.36
6 7 0.321653 CCAGGAACTCGTGGGAAAGG 60.322 60.000 10.07 0.00 45.44 3.11
7 8 3.233355 CCAGGAACTCGTGGGAAAG 57.767 57.895 10.07 0.00 45.44 2.62
13 14 1.001974 TGGACATTCCAGGAACTCGTG 59.998 52.381 3.18 1.08 42.67 4.35
14 15 1.348064 TGGACATTCCAGGAACTCGT 58.652 50.000 3.18 1.97 42.67 4.18
23 24 1.393603 TGCGTTGTTTGGACATTCCA 58.606 45.000 0.00 0.00 46.61 3.53
24 25 2.500509 TTGCGTTGTTTGGACATTCC 57.499 45.000 0.00 0.00 35.29 3.01
25 26 4.328712 AGTTTTTGCGTTGTTTGGACATTC 59.671 37.500 0.00 0.00 35.29 2.67
26 27 4.249661 AGTTTTTGCGTTGTTTGGACATT 58.750 34.783 0.00 0.00 35.29 2.71
27 28 3.855858 AGTTTTTGCGTTGTTTGGACAT 58.144 36.364 0.00 0.00 35.29 3.06
28 29 3.305398 AGTTTTTGCGTTGTTTGGACA 57.695 38.095 0.00 0.00 0.00 4.02
29 30 3.984896 CAAGTTTTTGCGTTGTTTGGAC 58.015 40.909 0.00 0.00 0.00 4.02
41 42 2.094099 GCAAGGTGTGTGCAAGTTTTTG 59.906 45.455 0.00 0.00 41.80 2.44
42 43 2.345876 GCAAGGTGTGTGCAAGTTTTT 58.654 42.857 0.00 0.00 41.80 1.94
43 44 1.735369 CGCAAGGTGTGTGCAAGTTTT 60.735 47.619 0.00 0.00 42.33 2.43
44 45 0.179140 CGCAAGGTGTGTGCAAGTTT 60.179 50.000 0.00 0.00 42.33 2.66
45 46 1.433064 CGCAAGGTGTGTGCAAGTT 59.567 52.632 0.00 0.00 42.33 2.66
46 47 3.110139 CGCAAGGTGTGTGCAAGT 58.890 55.556 0.00 0.00 42.33 3.16
51 52 1.169661 TTAAGGGCGCAAGGTGTGTG 61.170 55.000 10.83 0.00 40.96 3.82
52 53 0.889186 CTTAAGGGCGCAAGGTGTGT 60.889 55.000 10.83 0.00 38.28 3.72
53 54 0.889186 ACTTAAGGGCGCAAGGTGTG 60.889 55.000 10.83 0.00 38.28 3.82
54 55 0.688487 TACTTAAGGGCGCAAGGTGT 59.312 50.000 10.83 2.95 38.28 4.16
55 56 1.940613 GATACTTAAGGGCGCAAGGTG 59.059 52.381 10.83 0.00 38.28 4.00
56 57 1.838077 AGATACTTAAGGGCGCAAGGT 59.162 47.619 10.83 0.17 38.28 3.50
57 58 2.622064 AGATACTTAAGGGCGCAAGG 57.378 50.000 10.83 0.00 38.28 3.61
58 59 2.540101 CGAAGATACTTAAGGGCGCAAG 59.460 50.000 10.83 6.71 43.44 4.01
59 60 2.166870 TCGAAGATACTTAAGGGCGCAA 59.833 45.455 10.83 0.00 0.00 4.85
60 61 1.752498 TCGAAGATACTTAAGGGCGCA 59.248 47.619 10.83 0.00 0.00 6.09
61 62 2.503920 TCGAAGATACTTAAGGGCGC 57.496 50.000 7.53 0.00 0.00 6.53
62 63 3.576648 GGATCGAAGATACTTAAGGGCG 58.423 50.000 7.53 1.56 45.12 6.13
63 64 3.323979 TGGGATCGAAGATACTTAAGGGC 59.676 47.826 7.53 0.00 45.12 5.19
64 65 4.344102 TGTGGGATCGAAGATACTTAAGGG 59.656 45.833 7.53 0.00 45.12 3.95
65 66 5.531122 TGTGGGATCGAAGATACTTAAGG 57.469 43.478 7.53 0.00 45.12 2.69
66 67 7.843490 TTTTGTGGGATCGAAGATACTTAAG 57.157 36.000 0.00 0.00 45.12 1.85
67 68 8.801882 AATTTTGTGGGATCGAAGATACTTAA 57.198 30.769 0.00 0.00 45.12 1.85
68 69 8.801882 AAATTTTGTGGGATCGAAGATACTTA 57.198 30.769 0.00 0.00 45.12 2.24
69 70 7.393234 TGAAATTTTGTGGGATCGAAGATACTT 59.607 33.333 0.00 0.00 45.12 2.24
70 71 6.884295 TGAAATTTTGTGGGATCGAAGATACT 59.116 34.615 0.00 0.00 45.12 2.12
71 72 7.065803 TCTGAAATTTTGTGGGATCGAAGATAC 59.934 37.037 0.00 0.00 45.12 2.24
72 73 7.109501 TCTGAAATTTTGTGGGATCGAAGATA 58.890 34.615 0.00 0.00 45.12 1.98
73 74 5.945784 TCTGAAATTTTGTGGGATCGAAGAT 59.054 36.000 0.00 0.00 45.12 2.40
74 75 5.312895 TCTGAAATTTTGTGGGATCGAAGA 58.687 37.500 0.00 0.00 45.75 2.87
75 76 5.627499 TCTGAAATTTTGTGGGATCGAAG 57.373 39.130 0.00 0.00 0.00 3.79
76 77 6.588719 AATCTGAAATTTTGTGGGATCGAA 57.411 33.333 0.00 0.00 0.00 3.71
77 78 6.588719 AAATCTGAAATTTTGTGGGATCGA 57.411 33.333 0.00 0.00 0.00 3.59
78 79 7.656707 AAAAATCTGAAATTTTGTGGGATCG 57.343 32.000 0.00 0.00 32.23 3.69
119 120 6.041069 ACATGGGGAACAGTAAATTCGAAAAA 59.959 34.615 0.00 0.00 0.00 1.94
120 121 5.536916 ACATGGGGAACAGTAAATTCGAAAA 59.463 36.000 0.00 0.00 0.00 2.29
121 122 5.074115 ACATGGGGAACAGTAAATTCGAAA 58.926 37.500 0.00 0.00 0.00 3.46
122 123 4.658063 ACATGGGGAACAGTAAATTCGAA 58.342 39.130 0.00 0.00 0.00 3.71
123 124 4.295141 ACATGGGGAACAGTAAATTCGA 57.705 40.909 0.00 0.00 0.00 3.71
124 125 5.646360 AGTAACATGGGGAACAGTAAATTCG 59.354 40.000 0.00 0.00 0.00 3.34
125 126 8.747538 ATAGTAACATGGGGAACAGTAAATTC 57.252 34.615 0.00 0.00 0.00 2.17
126 127 9.185680 GAATAGTAACATGGGGAACAGTAAATT 57.814 33.333 0.00 0.00 0.00 1.82
127 128 8.333235 TGAATAGTAACATGGGGAACAGTAAAT 58.667 33.333 0.00 0.00 0.00 1.40
128 129 7.608761 GTGAATAGTAACATGGGGAACAGTAAA 59.391 37.037 0.00 0.00 0.00 2.01
129 130 7.107542 GTGAATAGTAACATGGGGAACAGTAA 58.892 38.462 0.00 0.00 0.00 2.24
130 131 6.352394 GGTGAATAGTAACATGGGGAACAGTA 60.352 42.308 0.00 0.00 0.00 2.74
131 132 5.497474 GTGAATAGTAACATGGGGAACAGT 58.503 41.667 0.00 0.00 0.00 3.55
132 133 4.881850 GGTGAATAGTAACATGGGGAACAG 59.118 45.833 0.00 0.00 0.00 3.16
133 134 4.289934 TGGTGAATAGTAACATGGGGAACA 59.710 41.667 0.00 0.00 0.00 3.18
134 135 4.850680 TGGTGAATAGTAACATGGGGAAC 58.149 43.478 0.00 0.00 0.00 3.62
135 136 4.785914 TCTGGTGAATAGTAACATGGGGAA 59.214 41.667 0.00 0.00 0.00 3.97
136 137 4.163458 GTCTGGTGAATAGTAACATGGGGA 59.837 45.833 0.00 0.00 0.00 4.81
137 138 4.080582 TGTCTGGTGAATAGTAACATGGGG 60.081 45.833 0.00 0.00 0.00 4.96
138 139 5.097742 TGTCTGGTGAATAGTAACATGGG 57.902 43.478 0.00 0.00 0.00 4.00
139 140 5.734720 ACTGTCTGGTGAATAGTAACATGG 58.265 41.667 0.00 0.00 0.00 3.66
140 141 6.398095 TGACTGTCTGGTGAATAGTAACATG 58.602 40.000 9.51 0.00 0.00 3.21
141 142 6.605471 TGACTGTCTGGTGAATAGTAACAT 57.395 37.500 9.51 0.00 0.00 2.71
142 143 6.413783 TTGACTGTCTGGTGAATAGTAACA 57.586 37.500 9.51 0.00 0.00 2.41
143 144 6.147328 GGTTTGACTGTCTGGTGAATAGTAAC 59.853 42.308 9.51 0.00 0.00 2.50
144 145 6.228258 GGTTTGACTGTCTGGTGAATAGTAA 58.772 40.000 9.51 0.00 0.00 2.24
145 146 5.279809 GGGTTTGACTGTCTGGTGAATAGTA 60.280 44.000 9.51 0.00 0.00 1.82
146 147 4.505039 GGGTTTGACTGTCTGGTGAATAGT 60.505 45.833 9.51 0.00 0.00 2.12
147 148 4.003648 GGGTTTGACTGTCTGGTGAATAG 58.996 47.826 9.51 0.00 0.00 1.73
148 149 3.244770 GGGGTTTGACTGTCTGGTGAATA 60.245 47.826 9.51 0.00 0.00 1.75
149 150 2.489073 GGGGTTTGACTGTCTGGTGAAT 60.489 50.000 9.51 0.00 0.00 2.57
150 151 1.133915 GGGGTTTGACTGTCTGGTGAA 60.134 52.381 9.51 0.00 0.00 3.18
151 152 0.472471 GGGGTTTGACTGTCTGGTGA 59.528 55.000 9.51 0.00 0.00 4.02
152 153 0.474184 AGGGGTTTGACTGTCTGGTG 59.526 55.000 9.51 0.00 0.00 4.17
153 154 1.222567 AAGGGGTTTGACTGTCTGGT 58.777 50.000 9.51 0.00 0.00 4.00
154 155 1.956477 CAAAGGGGTTTGACTGTCTGG 59.044 52.381 9.51 0.00 33.95 3.86
155 156 2.930950 TCAAAGGGGTTTGACTGTCTG 58.069 47.619 9.51 0.00 36.15 3.51
162 163 0.179012 GTCCGGTCAAAGGGGTTTGA 60.179 55.000 0.00 0.00 38.49 2.69
163 164 1.512156 CGTCCGGTCAAAGGGGTTTG 61.512 60.000 0.00 0.00 0.00 2.93
164 165 1.228033 CGTCCGGTCAAAGGGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
165 166 2.428622 CGTCCGGTCAAAGGGGTT 59.571 61.111 0.00 0.00 0.00 4.11
166 167 3.633116 CCGTCCGGTCAAAGGGGT 61.633 66.667 0.00 0.00 0.00 4.95
168 169 3.835790 TTGCCGTCCGGTCAAAGGG 62.836 63.158 7.66 0.00 37.65 3.95
169 170 2.281208 TTGCCGTCCGGTCAAAGG 60.281 61.111 7.66 0.00 37.65 3.11
170 171 2.325082 CCTTGCCGTCCGGTCAAAG 61.325 63.158 7.66 8.81 37.65 2.77
171 172 2.281208 CCTTGCCGTCCGGTCAAA 60.281 61.111 7.66 0.00 37.65 2.69
172 173 4.323477 CCCTTGCCGTCCGGTCAA 62.323 66.667 7.66 10.68 37.65 3.18
177 178 3.051392 GAAATGCCCTTGCCGTCCG 62.051 63.158 0.00 0.00 36.33 4.79
178 179 1.678970 AGAAATGCCCTTGCCGTCC 60.679 57.895 0.00 0.00 36.33 4.79
179 180 1.244019 ACAGAAATGCCCTTGCCGTC 61.244 55.000 0.00 0.00 36.33 4.79
180 181 0.037590 TACAGAAATGCCCTTGCCGT 59.962 50.000 0.00 0.00 36.33 5.68
181 182 1.133025 CTTACAGAAATGCCCTTGCCG 59.867 52.381 0.00 0.00 36.33 5.69
182 183 1.478105 CCTTACAGAAATGCCCTTGCC 59.522 52.381 0.00 0.00 36.33 4.52
183 184 2.094545 CACCTTACAGAAATGCCCTTGC 60.095 50.000 0.00 0.00 38.26 4.01
184 185 3.191371 GTCACCTTACAGAAATGCCCTTG 59.809 47.826 0.00 0.00 0.00 3.61
185 186 3.074538 AGTCACCTTACAGAAATGCCCTT 59.925 43.478 0.00 0.00 0.00 3.95
186 187 2.644798 AGTCACCTTACAGAAATGCCCT 59.355 45.455 0.00 0.00 0.00 5.19
187 188 3.073274 AGTCACCTTACAGAAATGCCC 57.927 47.619 0.00 0.00 0.00 5.36
188 189 4.072131 TCAAGTCACCTTACAGAAATGCC 58.928 43.478 0.00 0.00 0.00 4.40
189 190 4.377431 CGTCAAGTCACCTTACAGAAATGC 60.377 45.833 0.00 0.00 0.00 3.56
190 191 4.152402 CCGTCAAGTCACCTTACAGAAATG 59.848 45.833 0.00 0.00 0.00 2.32
191 192 4.039973 TCCGTCAAGTCACCTTACAGAAAT 59.960 41.667 0.00 0.00 0.00 2.17
192 193 3.385433 TCCGTCAAGTCACCTTACAGAAA 59.615 43.478 0.00 0.00 0.00 2.52
193 194 2.960384 TCCGTCAAGTCACCTTACAGAA 59.040 45.455 0.00 0.00 0.00 3.02
194 195 2.589720 TCCGTCAAGTCACCTTACAGA 58.410 47.619 0.00 0.00 0.00 3.41
195 196 3.005472 TCTTCCGTCAAGTCACCTTACAG 59.995 47.826 0.00 0.00 33.27 2.74
196 197 2.960384 TCTTCCGTCAAGTCACCTTACA 59.040 45.455 0.00 0.00 33.27 2.41
197 198 3.576648 CTCTTCCGTCAAGTCACCTTAC 58.423 50.000 0.00 0.00 33.27 2.34
198 199 2.561419 CCTCTTCCGTCAAGTCACCTTA 59.439 50.000 0.00 0.00 33.27 2.69
199 200 1.344763 CCTCTTCCGTCAAGTCACCTT 59.655 52.381 0.00 0.00 33.27 3.50
200 201 0.969894 CCTCTTCCGTCAAGTCACCT 59.030 55.000 0.00 0.00 33.27 4.00
201 202 0.037232 CCCTCTTCCGTCAAGTCACC 60.037 60.000 0.00 0.00 33.27 4.02
202 203 0.037232 CCCCTCTTCCGTCAAGTCAC 60.037 60.000 0.00 0.00 33.27 3.67
203 204 0.471211 ACCCCTCTTCCGTCAAGTCA 60.471 55.000 0.00 0.00 33.27 3.41
204 205 1.553706 TACCCCTCTTCCGTCAAGTC 58.446 55.000 0.00 0.00 33.27 3.01
205 206 2.249309 ATACCCCTCTTCCGTCAAGT 57.751 50.000 0.00 0.00 33.27 3.16
206 207 3.629142 AAATACCCCTCTTCCGTCAAG 57.371 47.619 0.00 0.00 0.00 3.02
207 208 4.076394 CAAAAATACCCCTCTTCCGTCAA 58.924 43.478 0.00 0.00 0.00 3.18
208 209 3.328343 TCAAAAATACCCCTCTTCCGTCA 59.672 43.478 0.00 0.00 0.00 4.35
209 210 3.939592 CTCAAAAATACCCCTCTTCCGTC 59.060 47.826 0.00 0.00 0.00 4.79
210 211 3.872630 GCTCAAAAATACCCCTCTTCCGT 60.873 47.826 0.00 0.00 0.00 4.69
211 212 2.683362 GCTCAAAAATACCCCTCTTCCG 59.317 50.000 0.00 0.00 0.00 4.30
212 213 3.697166 TGCTCAAAAATACCCCTCTTCC 58.303 45.455 0.00 0.00 0.00 3.46
213 214 5.299531 GGTATGCTCAAAAATACCCCTCTTC 59.700 44.000 1.15 0.00 41.65 2.87
214 215 5.044105 AGGTATGCTCAAAAATACCCCTCTT 60.044 40.000 7.97 0.00 46.47 2.85
215 216 4.478686 AGGTATGCTCAAAAATACCCCTCT 59.521 41.667 7.97 0.00 46.47 3.69
216 217 4.580580 CAGGTATGCTCAAAAATACCCCTC 59.419 45.833 7.97 0.00 46.47 4.30
217 218 4.229582 TCAGGTATGCTCAAAAATACCCCT 59.770 41.667 7.97 0.00 46.47 4.79
218 219 4.532834 TCAGGTATGCTCAAAAATACCCC 58.467 43.478 7.97 0.00 46.47 4.95
219 220 6.524101 TTTCAGGTATGCTCAAAAATACCC 57.476 37.500 7.97 0.00 46.47 3.69
223 224 8.260114 CCCTAATTTTCAGGTATGCTCAAAAAT 58.740 33.333 0.00 0.00 0.00 1.82
224 225 7.310361 CCCCTAATTTTCAGGTATGCTCAAAAA 60.310 37.037 0.00 0.00 0.00 1.94
225 226 6.154363 CCCCTAATTTTCAGGTATGCTCAAAA 59.846 38.462 0.00 0.00 0.00 2.44
226 227 5.656416 CCCCTAATTTTCAGGTATGCTCAAA 59.344 40.000 0.00 0.00 0.00 2.69
227 228 5.200483 CCCCTAATTTTCAGGTATGCTCAA 58.800 41.667 0.00 0.00 0.00 3.02
228 229 4.792068 CCCCTAATTTTCAGGTATGCTCA 58.208 43.478 0.00 0.00 0.00 4.26
229 230 3.570125 GCCCCTAATTTTCAGGTATGCTC 59.430 47.826 0.00 0.00 0.00 4.26
230 231 3.052944 TGCCCCTAATTTTCAGGTATGCT 60.053 43.478 0.00 0.00 0.00 3.79
231 232 3.295973 TGCCCCTAATTTTCAGGTATGC 58.704 45.455 0.00 0.00 0.00 3.14
232 233 5.930837 TTTGCCCCTAATTTTCAGGTATG 57.069 39.130 0.00 0.00 0.00 2.39
233 234 5.163311 GCATTTGCCCCTAATTTTCAGGTAT 60.163 40.000 0.00 0.00 34.31 2.73
234 235 4.161377 GCATTTGCCCCTAATTTTCAGGTA 59.839 41.667 0.00 0.00 34.31 3.08
235 236 3.055167 GCATTTGCCCCTAATTTTCAGGT 60.055 43.478 0.00 0.00 34.31 4.00
236 237 3.534554 GCATTTGCCCCTAATTTTCAGG 58.465 45.455 0.00 0.00 34.31 3.86
250 251 2.658422 CCACCACCTGGCATTTGC 59.342 61.111 0.00 0.00 39.32 3.68
257 258 0.400213 TAACTTGAGCCACCACCTGG 59.600 55.000 0.00 0.00 44.08 4.45
258 259 1.611673 CCTAACTTGAGCCACCACCTG 60.612 57.143 0.00 0.00 0.00 4.00
259 260 0.693049 CCTAACTTGAGCCACCACCT 59.307 55.000 0.00 0.00 0.00 4.00
260 261 0.690762 TCCTAACTTGAGCCACCACC 59.309 55.000 0.00 0.00 0.00 4.61
261 262 1.339151 CCTCCTAACTTGAGCCACCAC 60.339 57.143 0.00 0.00 0.00 4.16
262 263 0.984230 CCTCCTAACTTGAGCCACCA 59.016 55.000 0.00 0.00 0.00 4.17
263 264 1.276622 TCCTCCTAACTTGAGCCACC 58.723 55.000 0.00 0.00 0.00 4.61
264 265 4.755266 TTATCCTCCTAACTTGAGCCAC 57.245 45.455 0.00 0.00 0.00 5.01
265 266 5.397899 CCATTTATCCTCCTAACTTGAGCCA 60.398 44.000 0.00 0.00 0.00 4.75
266 267 5.066593 CCATTTATCCTCCTAACTTGAGCC 58.933 45.833 0.00 0.00 0.00 4.70
267 268 5.930135 TCCATTTATCCTCCTAACTTGAGC 58.070 41.667 0.00 0.00 0.00 4.26
268 269 8.844244 CAATTCCATTTATCCTCCTAACTTGAG 58.156 37.037 0.00 0.00 0.00 3.02
269 270 8.336235 ACAATTCCATTTATCCTCCTAACTTGA 58.664 33.333 0.00 0.00 0.00 3.02
270 271 8.525290 ACAATTCCATTTATCCTCCTAACTTG 57.475 34.615 0.00 0.00 0.00 3.16
271 272 7.780271 GGACAATTCCATTTATCCTCCTAACTT 59.220 37.037 0.00 0.00 42.30 2.66
272 273 7.290813 GGACAATTCCATTTATCCTCCTAACT 58.709 38.462 0.00 0.00 42.30 2.24
273 274 6.490381 GGGACAATTCCATTTATCCTCCTAAC 59.510 42.308 0.00 0.00 44.98 2.34
274 275 6.392842 AGGGACAATTCCATTTATCCTCCTAA 59.607 38.462 0.00 0.00 44.98 2.69
275 276 5.917087 AGGGACAATTCCATTTATCCTCCTA 59.083 40.000 0.00 0.00 44.98 2.94
276 277 4.733988 AGGGACAATTCCATTTATCCTCCT 59.266 41.667 0.00 0.00 44.98 3.69
277 278 5.066913 AGGGACAATTCCATTTATCCTCC 57.933 43.478 0.00 0.00 44.98 4.30
278 279 8.383175 TGTATAGGGACAATTCCATTTATCCTC 58.617 37.037 0.00 0.00 44.98 3.71
279 280 8.164070 GTGTATAGGGACAATTCCATTTATCCT 58.836 37.037 0.00 0.00 44.98 3.24
280 281 7.942341 TGTGTATAGGGACAATTCCATTTATCC 59.058 37.037 0.00 0.00 44.98 2.59
281 282 8.918202 TGTGTATAGGGACAATTCCATTTATC 57.082 34.615 0.00 0.00 44.98 1.75
282 283 9.881773 ATTGTGTATAGGGACAATTCCATTTAT 57.118 29.630 0.00 0.00 44.98 1.40
283 284 9.349713 GATTGTGTATAGGGACAATTCCATTTA 57.650 33.333 0.00 0.00 44.98 1.40
284 285 7.838696 TGATTGTGTATAGGGACAATTCCATTT 59.161 33.333 0.00 0.00 44.98 2.32
285 286 7.285401 GTGATTGTGTATAGGGACAATTCCATT 59.715 37.037 0.00 0.00 44.98 3.16
286 287 6.772716 GTGATTGTGTATAGGGACAATTCCAT 59.227 38.462 0.00 0.00 44.98 3.41
287 288 6.119536 GTGATTGTGTATAGGGACAATTCCA 58.880 40.000 0.00 0.00 44.98 3.53
288 289 5.236478 CGTGATTGTGTATAGGGACAATTCC 59.764 44.000 0.00 0.00 41.74 3.01
289 290 6.046593 TCGTGATTGTGTATAGGGACAATTC 58.953 40.000 0.00 0.00 41.74 2.17
290 291 5.984725 TCGTGATTGTGTATAGGGACAATT 58.015 37.500 0.00 0.00 41.74 2.32
291 292 5.607939 TCGTGATTGTGTATAGGGACAAT 57.392 39.130 0.00 0.00 43.82 2.71
292 293 5.186215 TCTTCGTGATTGTGTATAGGGACAA 59.814 40.000 0.00 0.00 36.54 3.18
293 294 4.707934 TCTTCGTGATTGTGTATAGGGACA 59.292 41.667 0.00 0.00 0.00 4.02
294 295 5.258456 TCTTCGTGATTGTGTATAGGGAC 57.742 43.478 0.00 0.00 0.00 4.46
295 296 5.655090 TCTTCTTCGTGATTGTGTATAGGGA 59.345 40.000 0.00 0.00 0.00 4.20
296 297 5.902681 TCTTCTTCGTGATTGTGTATAGGG 58.097 41.667 0.00 0.00 0.00 3.53
297 298 6.980978 ACATCTTCTTCGTGATTGTGTATAGG 59.019 38.462 0.00 0.00 0.00 2.57
298 299 7.993821 ACATCTTCTTCGTGATTGTGTATAG 57.006 36.000 0.00 0.00 0.00 1.31
299 300 8.899771 TCTACATCTTCTTCGTGATTGTGTATA 58.100 33.333 0.00 0.00 0.00 1.47
300 301 7.772166 TCTACATCTTCTTCGTGATTGTGTAT 58.228 34.615 0.00 0.00 0.00 2.29
301 302 7.153217 TCTACATCTTCTTCGTGATTGTGTA 57.847 36.000 0.00 0.00 0.00 2.90
302 303 6.025749 TCTACATCTTCTTCGTGATTGTGT 57.974 37.500 0.00 0.00 0.00 3.72
303 304 7.531280 AATCTACATCTTCTTCGTGATTGTG 57.469 36.000 0.00 0.00 0.00 3.33
304 305 9.088512 GTAAATCTACATCTTCTTCGTGATTGT 57.911 33.333 0.00 0.00 0.00 2.71
305 306 9.307121 AGTAAATCTACATCTTCTTCGTGATTG 57.693 33.333 0.00 0.00 0.00 2.67
306 307 9.522804 GAGTAAATCTACATCTTCTTCGTGATT 57.477 33.333 0.00 0.00 0.00 2.57
307 308 7.858382 CGAGTAAATCTACATCTTCTTCGTGAT 59.142 37.037 0.00 0.00 0.00 3.06
308 309 7.148289 ACGAGTAAATCTACATCTTCTTCGTGA 60.148 37.037 0.00 0.00 31.63 4.35
309 310 6.967767 ACGAGTAAATCTACATCTTCTTCGTG 59.032 38.462 0.00 0.00 31.63 4.35
310 311 7.066043 AGACGAGTAAATCTACATCTTCTTCGT 59.934 37.037 0.00 0.00 33.96 3.85
311 312 7.411274 AGACGAGTAAATCTACATCTTCTTCG 58.589 38.462 0.00 0.00 0.00 3.79
312 313 9.654417 GTAGACGAGTAAATCTACATCTTCTTC 57.346 37.037 6.55 0.00 44.50 2.87
313 314 8.336806 CGTAGACGAGTAAATCTACATCTTCTT 58.663 37.037 10.96 0.00 45.09 2.52
314 315 7.495279 ACGTAGACGAGTAAATCTACATCTTCT 59.505 37.037 9.41 0.00 45.09 2.85
315 316 7.629130 ACGTAGACGAGTAAATCTACATCTTC 58.371 38.462 9.41 0.00 45.09 2.87
324 325 5.770430 CGATGAACGTAGACGAGTAAATC 57.230 43.478 9.41 4.06 43.02 2.17
347 348 9.562583 GACTTCCGTATTGCATGTTTTTATTTA 57.437 29.630 0.00 0.00 0.00 1.40
364 365 2.611971 GCAGTTCCACATGACTTCCGTA 60.612 50.000 0.00 0.00 0.00 4.02
368 369 3.141398 TCTTGCAGTTCCACATGACTTC 58.859 45.455 0.00 0.00 0.00 3.01
394 395 7.044706 CGTTCGAAATTTCCTTTGATGAATAGC 60.045 37.037 12.54 0.00 0.00 2.97
395 396 8.175069 TCGTTCGAAATTTCCTTTGATGAATAG 58.825 33.333 12.54 7.05 0.00 1.73
400 401 4.851558 GGTCGTTCGAAATTTCCTTTGATG 59.148 41.667 12.54 0.00 0.00 3.07
401 402 4.378046 CGGTCGTTCGAAATTTCCTTTGAT 60.378 41.667 12.54 0.00 0.00 2.57
416 417 4.988486 ACGCACGGTCGGTCGTTC 62.988 66.667 1.49 0.00 41.86 3.95
422 423 1.358725 AATTCATCACGCACGGTCGG 61.359 55.000 3.77 0.00 0.00 4.79
450 451 4.059511 TGTTCGGAGCTATTTTGAACGAA 58.940 39.130 0.00 0.00 41.29 3.85
453 454 5.545658 TCATGTTCGGAGCTATTTTGAAC 57.454 39.130 0.00 0.00 39.40 3.18
455 456 5.000591 TGTTCATGTTCGGAGCTATTTTGA 58.999 37.500 0.00 0.00 0.00 2.69
468 469 6.991485 ATGTTCAATTTCGTGTTCATGTTC 57.009 33.333 0.00 0.00 0.00 3.18
489 490 7.498225 GGTTTGTAGTTCGTTAATTGCAAATG 58.502 34.615 1.71 0.00 38.48 2.32
494 495 5.021120 TCGGTTTGTAGTTCGTTAATTGC 57.979 39.130 0.00 0.00 0.00 3.56
503 504 2.991190 TCGAGCAATCGGTTTGTAGTTC 59.009 45.455 0.00 0.00 37.65 3.01
505 506 2.736144 TCGAGCAATCGGTTTGTAGT 57.264 45.000 0.00 0.00 37.65 2.73
506 507 5.712217 TTATTCGAGCAATCGGTTTGTAG 57.288 39.130 0.00 0.00 37.65 2.74
507 508 6.982141 AGTATTATTCGAGCAATCGGTTTGTA 59.018 34.615 0.00 0.00 37.65 2.41
508 509 5.815740 AGTATTATTCGAGCAATCGGTTTGT 59.184 36.000 0.00 0.00 37.65 2.83
509 510 6.287107 AGTATTATTCGAGCAATCGGTTTG 57.713 37.500 0.00 0.00 38.43 2.93
510 511 9.701098 TTATAGTATTATTCGAGCAATCGGTTT 57.299 29.630 0.00 0.00 0.00 3.27
511 512 9.136952 GTTATAGTATTATTCGAGCAATCGGTT 57.863 33.333 0.00 0.00 0.00 4.44
512 513 8.301720 TGTTATAGTATTATTCGAGCAATCGGT 58.698 33.333 0.00 0.00 0.00 4.69
513 514 8.683550 TGTTATAGTATTATTCGAGCAATCGG 57.316 34.615 0.00 0.00 0.00 4.18
518 519 9.586435 CATCCATGTTATAGTATTATTCGAGCA 57.414 33.333 0.00 0.00 0.00 4.26
519 520 9.587772 ACATCCATGTTATAGTATTATTCGAGC 57.412 33.333 0.00 0.00 37.90 5.03
521 522 9.366216 GCACATCCATGTTATAGTATTATTCGA 57.634 33.333 0.00 0.00 39.39 3.71
522 523 8.604035 GGCACATCCATGTTATAGTATTATTCG 58.396 37.037 0.00 0.00 39.39 3.34
523 524 9.672673 AGGCACATCCATGTTATAGTATTATTC 57.327 33.333 0.00 0.00 39.39 1.75
524 525 9.453572 CAGGCACATCCATGTTATAGTATTATT 57.546 33.333 0.00 0.00 39.39 1.40
525 526 8.605947 ACAGGCACATCCATGTTATAGTATTAT 58.394 33.333 0.00 0.00 39.39 1.28
526 527 7.973402 ACAGGCACATCCATGTTATAGTATTA 58.027 34.615 0.00 0.00 39.39 0.98
527 528 6.841601 ACAGGCACATCCATGTTATAGTATT 58.158 36.000 0.00 0.00 39.39 1.89
528 529 6.439636 ACAGGCACATCCATGTTATAGTAT 57.560 37.500 0.00 0.00 39.39 2.12
529 530 5.887214 ACAGGCACATCCATGTTATAGTA 57.113 39.130 0.00 0.00 39.39 1.82
530 531 4.778213 ACAGGCACATCCATGTTATAGT 57.222 40.909 0.00 0.00 39.39 2.12
531 532 5.180117 GCTTACAGGCACATCCATGTTATAG 59.820 44.000 0.00 0.00 39.39 1.31
532 533 5.063204 GCTTACAGGCACATCCATGTTATA 58.937 41.667 0.00 0.00 39.39 0.98
533 534 3.885297 GCTTACAGGCACATCCATGTTAT 59.115 43.478 0.00 0.00 39.39 1.89
534 535 3.278574 GCTTACAGGCACATCCATGTTA 58.721 45.455 0.00 0.00 39.39 2.41
572 601 8.668510 AATCTCGTCTACTTATTAGTTCCGTA 57.331 34.615 0.00 0.00 35.78 4.02
588 617 8.718734 GTTTTGATTTAACACCTAATCTCGTCT 58.281 33.333 0.00 0.00 33.08 4.18
610 639 1.830477 AGGTTGCATGTGGTGTGTTTT 59.170 42.857 0.00 0.00 0.00 2.43
642 671 3.057104 CGTAGTGGACTGGTTGTATGTGA 60.057 47.826 0.00 0.00 0.00 3.58
643 672 3.250744 CGTAGTGGACTGGTTGTATGTG 58.749 50.000 0.00 0.00 0.00 3.21
644 673 2.895404 ACGTAGTGGACTGGTTGTATGT 59.105 45.455 0.00 0.00 42.51 2.29
645 674 3.587797 ACGTAGTGGACTGGTTGTATG 57.412 47.619 0.00 0.00 42.51 2.39
648 677 2.994186 AAACGTAGTGGACTGGTTGT 57.006 45.000 0.00 0.00 45.00 3.32
677 726 6.589907 CAGTTTTCAACAAGCCAAACTTAAGT 59.410 34.615 1.12 1.12 37.36 2.24
681 730 3.684305 GCAGTTTTCAACAAGCCAAACTT 59.316 39.130 0.00 0.00 37.36 2.66
691 740 2.948979 ACTGAATCGGCAGTTTTCAACA 59.051 40.909 0.00 0.00 46.42 3.33
692 741 3.626028 ACTGAATCGGCAGTTTTCAAC 57.374 42.857 0.00 0.00 46.42 3.18
724 773 2.362077 GTTGTGTGGATTGAGCCAAACT 59.638 45.455 9.77 0.00 44.87 2.66
737 786 6.536582 TGAAATTGTATTGTTTGGTTGTGTGG 59.463 34.615 0.00 0.00 0.00 4.17
772 856 1.052287 GCCAACAAAAACAGCGATCG 58.948 50.000 11.69 11.69 0.00 3.69
913 1006 3.216292 GTGCGTTGGTGGCCAAGT 61.216 61.111 7.24 0.00 44.82 3.16
1272 1381 3.171388 AGGTGGCGGGGGATGATC 61.171 66.667 0.00 0.00 0.00 2.92
1365 1477 1.074072 CACCGGGTTGATGTTGGGA 59.926 57.895 6.32 0.00 0.00 4.37
1477 1597 1.413077 CCCCAGCTACAGCCTAACTAC 59.587 57.143 0.00 0.00 43.38 2.73
1497 1620 1.745087 CAAGCACACCCATCCATACAC 59.255 52.381 0.00 0.00 0.00 2.90
1668 1804 4.713824 AATCCAAAGCACATGAGTGATG 57.286 40.909 0.00 0.00 45.00 3.07
1866 2065 8.352752 GAAATTTTCGTCCAATCTTTCTGTTT 57.647 30.769 0.00 0.00 0.00 2.83
1867 2066 7.930513 GAAATTTTCGTCCAATCTTTCTGTT 57.069 32.000 0.00 0.00 0.00 3.16
1922 2121 0.097150 GAAATTCAGAACGAGCGGGC 59.903 55.000 0.00 0.00 0.00 6.13
1960 2159 2.213499 AGGAGACAGTTTTCAGTTGCG 58.787 47.619 0.00 0.00 0.00 4.85
2021 2584 2.076863 CTCCCCGCCAAATCGATAATC 58.923 52.381 0.00 0.00 0.00 1.75
2025 2588 0.474184 AATCTCCCCGCCAAATCGAT 59.526 50.000 0.00 0.00 0.00 3.59
2067 2630 2.434331 CCCGCCAAACTCCCAGAA 59.566 61.111 0.00 0.00 0.00 3.02
2147 2710 1.820519 GCAAAAGGATGTGCCAGATGA 59.179 47.619 0.00 0.00 40.02 2.92
2217 2788 5.961398 TCCAACTATCCTTCCGGAAATTA 57.039 39.130 19.39 6.80 44.02 1.40
2224 2795 4.283467 TCCATGTATCCAACTATCCTTCCG 59.717 45.833 0.00 0.00 0.00 4.30
2228 2799 5.093236 TCCTCCATGTATCCAACTATCCT 57.907 43.478 0.00 0.00 0.00 3.24
2253 2824 7.976175 GGAATTCACCAGGTCTTTGATTATTTC 59.024 37.037 7.93 0.00 0.00 2.17
2268 2839 4.790766 GCGCTTGAATATGGAATTCACCAG 60.791 45.833 7.93 0.00 43.49 4.00
2287 2858 1.004277 CGTGAGTTTCTTCGAGCGCT 61.004 55.000 11.27 11.27 0.00 5.92
2376 2948 3.370840 AGGAATAGTGCTTCAATGGCA 57.629 42.857 0.00 0.00 37.36 4.92
2410 2982 1.327690 ATCTCCGCCCTCGCTTAACA 61.328 55.000 0.00 0.00 0.00 2.41
2444 3016 4.993705 TTTACCTGAGTTTGTCCTCCAT 57.006 40.909 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.