Multiple sequence alignment - TraesCS6D01G106600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G106600
chr6D
100.000
2447
0
0
1
2447
69906412
69903966
0.000000e+00
4519
1
TraesCS6D01G106600
chr6D
84.965
858
82
19
806
1638
69788557
69787722
0.000000e+00
826
2
TraesCS6D01G106600
chr6D
86.802
591
57
11
1064
1638
69824657
69824072
7.380000e-180
640
3
TraesCS6D01G106600
chr6D
84.735
642
67
15
1021
1638
69750356
69749722
4.470000e-172
614
4
TraesCS6D01G106600
chr6D
89.024
328
29
5
1312
1638
69785332
69785011
1.360000e-107
399
5
TraesCS6D01G106600
chr6D
88.415
328
31
5
1312
1638
69821690
69821369
2.950000e-104
388
6
TraesCS6D01G106600
chr6D
86.158
354
26
9
912
1247
69820767
69820419
6.430000e-96
361
7
TraesCS6D01G106600
chr6D
91.600
250
20
1
1289
1538
69725057
69724809
6.480000e-91
344
8
TraesCS6D01G106600
chr6D
83.908
348
31
11
916
1247
69725338
69725000
2.360000e-80
309
9
TraesCS6D01G106600
chr6D
82.958
311
28
10
918
1214
69785790
69785491
8.680000e-65
257
10
TraesCS6D01G106600
chr6D
92.174
115
8
1
1525
1638
69747525
69747411
7.000000e-36
161
11
TraesCS6D01G106600
chr6A
92.950
766
25
5
778
1530
87645333
87644584
0.000000e+00
1088
12
TraesCS6D01G106600
chr6A
87.172
647
29
32
1
640
583687344
583687943
0.000000e+00
686
13
TraesCS6D01G106600
chr6A
81.720
558
80
18
1901
2445
591826816
591826268
1.730000e-121
446
14
TraesCS6D01G106600
chr6B
89.897
871
42
18
788
1638
144796734
144795890
0.000000e+00
1079
15
TraesCS6D01G106600
chr6B
83.066
874
85
31
808
1638
144751689
144750836
0.000000e+00
736
16
TraesCS6D01G106600
chr6B
85.373
335
29
11
805
1122
144915708
144915377
1.810000e-86
329
17
TraesCS6D01G106600
chr6B
90.164
122
11
1
1519
1639
144729156
144729035
9.060000e-35
158
18
TraesCS6D01G106600
chr6B
90.909
77
7
0
1
77
560626636
560626712
1.200000e-18
104
19
TraesCS6D01G106600
chr5B
89.905
634
45
9
1
632
570342164
570342780
0.000000e+00
798
20
TraesCS6D01G106600
chr5A
96.092
435
10
3
1
430
34839704
34839272
0.000000e+00
702
21
TraesCS6D01G106600
chr1A
95.862
435
11
4
1
430
2990789
2990357
0.000000e+00
697
22
TraesCS6D01G106600
chr1A
84.831
178
18
7
460
633
568527019
568527191
1.160000e-38
171
23
TraesCS6D01G106600
chr1A
90.076
131
10
3
399
529
541158845
541158972
1.510000e-37
167
24
TraesCS6D01G106600
chr1A
87.143
140
13
4
494
633
19431707
19431841
1.170000e-33
154
25
TraesCS6D01G106600
chr1A
87.143
140
13
4
494
633
19434635
19434769
1.170000e-33
154
26
TraesCS6D01G106600
chr4A
94.432
449
22
2
1
448
713745524
713745970
0.000000e+00
688
27
TraesCS6D01G106600
chr7D
92.434
489
18
8
146
632
259388676
259388205
0.000000e+00
680
28
TraesCS6D01G106600
chr7D
97.977
346
7
0
1
346
528062179
528061834
3.480000e-168
601
29
TraesCS6D01G106600
chr7D
82.923
568
72
19
1893
2447
484368529
484369084
2.830000e-134
488
30
TraesCS6D01G106600
chr7D
82.832
565
73
17
1892
2447
1599801
1600350
3.660000e-133
484
31
TraesCS6D01G106600
chr7D
81.883
563
79
16
1892
2446
1604110
1604657
1.030000e-123
453
32
TraesCS6D01G106600
chr7D
92.827
237
10
7
358
591
528061854
528061622
1.080000e-88
337
33
TraesCS6D01G106600
chr5D
91.446
491
12
9
146
635
394785619
394785158
0.000000e+00
647
34
TraesCS6D01G106600
chr2B
94.444
378
19
1
1
378
657935424
657935799
4.540000e-162
580
35
TraesCS6D01G106600
chr2B
80.851
188
22
14
453
634
257920000
257919821
4.240000e-28
135
36
TraesCS6D01G106600
chr2B
93.151
73
3
2
378
448
657935831
657935903
3.330000e-19
106
37
TraesCS6D01G106600
chr3A
83.627
568
68
19
1894
2447
165339993
165340549
6.040000e-141
510
38
TraesCS6D01G106600
chr3A
84.127
189
18
9
449
633
628891700
628891520
3.230000e-39
172
39
TraesCS6D01G106600
chr7B
82.238
563
77
19
1895
2446
79070307
79070857
4.770000e-127
464
40
TraesCS6D01G106600
chr1D
82.500
560
69
18
1889
2436
475956209
475956751
4.770000e-127
464
41
TraesCS6D01G106600
chr3D
81.979
566
75
21
1895
2447
584343108
584342557
2.870000e-124
455
42
TraesCS6D01G106600
chr2A
81.105
561
87
14
1897
2447
80200551
80200000
4.830000e-117
431
43
TraesCS6D01G106600
chr2A
81.818
187
18
13
460
633
18166029
18165846
2.540000e-30
143
44
TraesCS6D01G106600
chr2D
90.647
139
7
5
503
638
553263691
553263556
1.930000e-41
180
45
TraesCS6D01G106600
chrUn
87.143
140
13
4
494
633
252251093
252250959
1.170000e-33
154
46
TraesCS6D01G106600
chrUn
87.143
140
13
4
494
633
362469830
362469964
1.170000e-33
154
47
TraesCS6D01G106600
chrUn
90.000
80
8
0
1
80
49381679
49381600
1.200000e-18
104
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G106600
chr6D
69903966
69906412
2446
True
4519.0
4519
100.0000
1
2447
1
chr6D.!!$R1
2446
1
TraesCS6D01G106600
chr6D
69785011
69788557
3546
True
494.0
826
85.6490
806
1638
3
chr6D.!!$R4
832
2
TraesCS6D01G106600
chr6D
69820419
69824657
4238
True
463.0
640
87.1250
912
1638
3
chr6D.!!$R5
726
3
TraesCS6D01G106600
chr6D
69747411
69750356
2945
True
387.5
614
88.4545
1021
1638
2
chr6D.!!$R3
617
4
TraesCS6D01G106600
chr6D
69724809
69725338
529
True
326.5
344
87.7540
916
1538
2
chr6D.!!$R2
622
5
TraesCS6D01G106600
chr6A
87644584
87645333
749
True
1088.0
1088
92.9500
778
1530
1
chr6A.!!$R1
752
6
TraesCS6D01G106600
chr6A
583687344
583687943
599
False
686.0
686
87.1720
1
640
1
chr6A.!!$F1
639
7
TraesCS6D01G106600
chr6A
591826268
591826816
548
True
446.0
446
81.7200
1901
2445
1
chr6A.!!$R2
544
8
TraesCS6D01G106600
chr6B
144795890
144796734
844
True
1079.0
1079
89.8970
788
1638
1
chr6B.!!$R3
850
9
TraesCS6D01G106600
chr6B
144750836
144751689
853
True
736.0
736
83.0660
808
1638
1
chr6B.!!$R2
830
10
TraesCS6D01G106600
chr5B
570342164
570342780
616
False
798.0
798
89.9050
1
632
1
chr5B.!!$F1
631
11
TraesCS6D01G106600
chr7D
484368529
484369084
555
False
488.0
488
82.9230
1893
2447
1
chr7D.!!$F1
554
12
TraesCS6D01G106600
chr7D
528061622
528062179
557
True
469.0
601
95.4020
1
591
2
chr7D.!!$R2
590
13
TraesCS6D01G106600
chr7D
1599801
1604657
4856
False
468.5
484
82.3575
1892
2447
2
chr7D.!!$F2
555
14
TraesCS6D01G106600
chr3A
165339993
165340549
556
False
510.0
510
83.6270
1894
2447
1
chr3A.!!$F1
553
15
TraesCS6D01G106600
chr7B
79070307
79070857
550
False
464.0
464
82.2380
1895
2446
1
chr7B.!!$F1
551
16
TraesCS6D01G106600
chr1D
475956209
475956751
542
False
464.0
464
82.5000
1889
2436
1
chr1D.!!$F1
547
17
TraesCS6D01G106600
chr3D
584342557
584343108
551
True
455.0
455
81.9790
1895
2447
1
chr3D.!!$R1
552
18
TraesCS6D01G106600
chr2A
80200000
80200551
551
True
431.0
431
81.1050
1897
2447
1
chr2A.!!$R2
550
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
471
478
0.173708
GATCGAGAGGAGCGGTGTTT
59.826
55.0
0.0
0.0
0.0
2.83
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1882
5981
0.035056
AGTTGCTCCCACATACAGGC
60.035
55.0
0.0
0.0
0.0
4.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
442
448
1.498865
GCGACGGTGCCAGGAATATG
61.499
60.000
0.00
0.00
0.00
1.78
471
478
0.173708
GATCGAGAGGAGCGGTGTTT
59.826
55.000
0.00
0.00
0.00
2.83
472
479
0.608640
ATCGAGAGGAGCGGTGTTTT
59.391
50.000
0.00
0.00
0.00
2.43
473
480
0.319555
TCGAGAGGAGCGGTGTTTTG
60.320
55.000
0.00
0.00
0.00
2.44
474
481
0.600255
CGAGAGGAGCGGTGTTTTGT
60.600
55.000
0.00
0.00
0.00
2.83
475
482
0.868406
GAGAGGAGCGGTGTTTTGTG
59.132
55.000
0.00
0.00
0.00
3.33
476
483
1.166531
AGAGGAGCGGTGTTTTGTGC
61.167
55.000
0.00
0.00
0.00
4.57
477
484
2.051345
GGAGCGGTGTTTTGTGCG
60.051
61.111
0.00
0.00
0.00
5.34
478
485
2.713154
GAGCGGTGTTTTGTGCGT
59.287
55.556
0.00
0.00
0.00
5.24
479
486
1.654137
GAGCGGTGTTTTGTGCGTG
60.654
57.895
0.00
0.00
0.00
5.34
480
487
2.653766
GCGGTGTTTTGTGCGTGG
60.654
61.111
0.00
0.00
0.00
4.94
482
489
1.585002
CGGTGTTTTGTGCGTGGTG
60.585
57.895
0.00
0.00
0.00
4.17
484
491
1.876263
GTGTTTTGTGCGTGGTGGC
60.876
57.895
0.00
0.00
0.00
5.01
521
528
4.410400
GGGGTGGGGTGCGAGAAG
62.410
72.222
0.00
0.00
0.00
2.85
522
529
4.410400
GGGTGGGGTGCGAGAAGG
62.410
72.222
0.00
0.00
0.00
3.46
523
530
4.410400
GGTGGGGTGCGAGAAGGG
62.410
72.222
0.00
0.00
0.00
3.95
525
532
4.649705
TGGGGTGCGAGAAGGGGA
62.650
66.667
0.00
0.00
0.00
4.81
528
535
4.452733
GGTGCGAGAAGGGGACGG
62.453
72.222
0.00
0.00
0.00
4.79
591
598
4.841443
AAGTGGTGGGACGAAAATAAAC
57.159
40.909
0.00
0.00
0.00
2.01
594
601
1.469703
GGTGGGACGAAAATAAACCCG
59.530
52.381
0.00
0.00
43.04
5.28
596
603
1.350351
TGGGACGAAAATAAACCCGGA
59.650
47.619
0.73
0.00
43.04
5.14
598
605
2.162208
GGGACGAAAATAAACCCGGAAC
59.838
50.000
0.73
0.00
0.00
3.62
633
641
7.721842
CCAACTGAGACATTAGGAGTAGAGATA
59.278
40.741
0.00
0.00
0.00
1.98
640
648
9.184523
AGACATTAGGAGTAGAGATATATGTGC
57.815
37.037
0.00
0.00
0.00
4.57
641
649
7.990917
ACATTAGGAGTAGAGATATATGTGCG
58.009
38.462
0.00
0.00
0.00
5.34
642
650
7.612244
ACATTAGGAGTAGAGATATATGTGCGT
59.388
37.037
0.00
0.00
0.00
5.24
643
651
5.888691
AGGAGTAGAGATATATGTGCGTG
57.111
43.478
0.00
0.00
0.00
5.34
644
652
5.317808
AGGAGTAGAGATATATGTGCGTGT
58.682
41.667
0.00
0.00
0.00
4.49
645
653
6.473758
AGGAGTAGAGATATATGTGCGTGTA
58.526
40.000
0.00
0.00
0.00
2.90
646
654
7.113437
AGGAGTAGAGATATATGTGCGTGTAT
58.887
38.462
0.00
0.00
0.00
2.29
647
655
7.281324
AGGAGTAGAGATATATGTGCGTGTATC
59.719
40.741
0.00
1.47
0.00
2.24
648
656
7.065923
GGAGTAGAGATATATGTGCGTGTATCA
59.934
40.741
9.67
0.00
0.00
2.15
649
657
7.753659
AGTAGAGATATATGTGCGTGTATCAC
58.246
38.462
9.67
4.90
35.14
3.06
650
658
6.575162
AGAGATATATGTGCGTGTATCACA
57.425
37.500
9.67
0.00
46.86
3.58
651
659
6.981722
AGAGATATATGTGCGTGTATCACAA
58.018
36.000
9.67
0.00
46.07
3.33
652
660
7.606349
AGAGATATATGTGCGTGTATCACAAT
58.394
34.615
9.67
0.00
46.07
2.71
653
661
8.739972
AGAGATATATGTGCGTGTATCACAATA
58.260
33.333
9.67
1.69
46.07
1.90
654
662
9.521503
GAGATATATGTGCGTGTATCACAATAT
57.478
33.333
9.67
5.59
46.07
1.28
706
714
9.755064
AAACATCTATATCTTTGTTTTTCGACG
57.245
29.630
0.00
0.00
38.72
5.12
707
715
7.906160
ACATCTATATCTTTGTTTTTCGACGG
58.094
34.615
0.00
0.00
0.00
4.79
708
716
6.340537
TCTATATCTTTGTTTTTCGACGGC
57.659
37.500
0.00
0.00
0.00
5.68
709
717
5.870433
TCTATATCTTTGTTTTTCGACGGCA
59.130
36.000
0.00
0.00
0.00
5.69
710
718
3.701532
ATCTTTGTTTTTCGACGGCAA
57.298
38.095
0.00
0.00
0.00
4.52
711
719
2.788030
TCTTTGTTTTTCGACGGCAAC
58.212
42.857
0.00
0.00
0.00
4.17
712
720
2.161808
TCTTTGTTTTTCGACGGCAACA
59.838
40.909
0.00
0.00
0.00
3.33
713
721
1.897641
TTGTTTTTCGACGGCAACAC
58.102
45.000
0.00
0.00
0.00
3.32
714
722
0.803117
TGTTTTTCGACGGCAACACA
59.197
45.000
0.00
0.00
0.00
3.72
715
723
1.199327
TGTTTTTCGACGGCAACACAA
59.801
42.857
0.00
0.00
0.00
3.33
716
724
1.843753
GTTTTTCGACGGCAACACAAG
59.156
47.619
0.00
0.00
0.00
3.16
717
725
0.378962
TTTTCGACGGCAACACAAGG
59.621
50.000
0.00
0.00
0.00
3.61
718
726
0.462225
TTTCGACGGCAACACAAGGA
60.462
50.000
0.00
0.00
0.00
3.36
719
727
1.155424
TTCGACGGCAACACAAGGAC
61.155
55.000
0.00
0.00
0.00
3.85
720
728
1.885388
CGACGGCAACACAAGGACA
60.885
57.895
0.00
0.00
0.00
4.02
721
729
1.227999
CGACGGCAACACAAGGACAT
61.228
55.000
0.00
0.00
0.00
3.06
722
730
0.951558
GACGGCAACACAAGGACATT
59.048
50.000
0.00
0.00
0.00
2.71
723
731
0.951558
ACGGCAACACAAGGACATTC
59.048
50.000
0.00
0.00
0.00
2.67
724
732
0.950836
CGGCAACACAAGGACATTCA
59.049
50.000
0.00
0.00
0.00
2.57
725
733
1.541147
CGGCAACACAAGGACATTCAT
59.459
47.619
0.00
0.00
0.00
2.57
726
734
2.414559
CGGCAACACAAGGACATTCATC
60.415
50.000
0.00
0.00
0.00
2.92
727
735
2.821969
GGCAACACAAGGACATTCATCT
59.178
45.455
0.00
0.00
0.00
2.90
728
736
4.009675
GGCAACACAAGGACATTCATCTA
58.990
43.478
0.00
0.00
0.00
1.98
729
737
4.095483
GGCAACACAAGGACATTCATCTAG
59.905
45.833
0.00
0.00
0.00
2.43
730
738
4.697352
GCAACACAAGGACATTCATCTAGT
59.303
41.667
0.00
0.00
0.00
2.57
731
739
5.391310
GCAACACAAGGACATTCATCTAGTG
60.391
44.000
0.00
0.00
0.00
2.74
732
740
5.745312
ACACAAGGACATTCATCTAGTGA
57.255
39.130
0.00
0.00
34.25
3.41
733
741
6.305272
ACACAAGGACATTCATCTAGTGAT
57.695
37.500
0.00
0.00
36.54
3.06
734
742
7.423844
ACACAAGGACATTCATCTAGTGATA
57.576
36.000
0.00
0.00
36.54
2.15
735
743
7.851228
ACACAAGGACATTCATCTAGTGATAA
58.149
34.615
0.00
0.00
36.54
1.75
736
744
8.321353
ACACAAGGACATTCATCTAGTGATAAA
58.679
33.333
0.00
0.00
36.54
1.40
737
745
8.607459
CACAAGGACATTCATCTAGTGATAAAC
58.393
37.037
0.00
0.00
36.54
2.01
738
746
8.321353
ACAAGGACATTCATCTAGTGATAAACA
58.679
33.333
0.00
0.00
36.54
2.83
739
747
9.166173
CAAGGACATTCATCTAGTGATAAACAA
57.834
33.333
0.00
0.00
36.54
2.83
740
748
9.739276
AAGGACATTCATCTAGTGATAAACAAA
57.261
29.630
0.00
0.00
36.54
2.83
741
749
9.167311
AGGACATTCATCTAGTGATAAACAAAC
57.833
33.333
0.00
0.00
36.54
2.93
742
750
8.946085
GGACATTCATCTAGTGATAAACAAACA
58.054
33.333
0.00
0.00
36.54
2.83
769
777
9.449719
TTTCTCATATCTATATCTACTCGTGCA
57.550
33.333
0.00
0.00
0.00
4.57
770
778
9.620259
TTCTCATATCTATATCTACTCGTGCAT
57.380
33.333
0.00
0.00
0.00
3.96
934
945
3.489355
AGAACACACAAAGCATCCATCA
58.511
40.909
0.00
0.00
0.00
3.07
1077
1108
2.296792
TGCAATGCCAAGCGTATGTAT
58.703
42.857
1.53
0.00
0.00
2.29
1127
1162
7.866393
GCTTCATTCTTCCATTCTTTCATATGG
59.134
37.037
2.13
0.00
42.18
2.74
1248
1283
2.821969
GAGACAGGTGCATGATTTTGGT
59.178
45.455
0.00
0.00
0.00
3.67
1368
1418
1.299089
GCGCAAGTGCCGAAACTTT
60.299
52.632
0.30
0.00
38.34
2.66
1506
1563
5.430886
TGATGCTTGTCATGTGCTACTTAT
58.569
37.500
0.00
0.00
35.05
1.73
1540
1609
4.727475
TGTTTGTGTATGTGTGTGTGTTG
58.273
39.130
0.00
0.00
0.00
3.33
1543
1612
4.809815
TGTGTATGTGTGTGTGTTGATG
57.190
40.909
0.00
0.00
0.00
3.07
1580
5459
7.414222
AATAACCAAAGCAGTTCATCATGAT
57.586
32.000
1.18
1.18
0.00
2.45
1606
5486
4.412199
TCCGTGGAATAAGATGATTTCCCT
59.588
41.667
0.00
0.00
38.51
4.20
1680
5561
5.485209
AAAGTCCCCTAAACACTCTACAG
57.515
43.478
0.00
0.00
0.00
2.74
1681
5562
4.399483
AGTCCCCTAAACACTCTACAGA
57.601
45.455
0.00
0.00
0.00
3.41
1702
5583
5.241506
CAGAGTTCCTGGAAAGTTTTATGCA
59.758
40.000
11.40
0.00
39.23
3.96
1704
5585
5.140454
AGTTCCTGGAAAGTTTTATGCAGT
58.860
37.500
11.40
0.00
33.64
4.40
1707
5588
6.478512
TCCTGGAAAGTTTTATGCAGTTTT
57.521
33.333
0.00
0.00
33.64
2.43
1710
5591
7.504238
TCCTGGAAAGTTTTATGCAGTTTTCTA
59.496
33.333
0.00
0.00
33.64
2.10
1711
5592
8.141268
CCTGGAAAGTTTTATGCAGTTTTCTAA
58.859
33.333
0.00
0.00
33.64
2.10
1712
5593
9.528018
CTGGAAAGTTTTATGCAGTTTTCTAAA
57.472
29.630
0.00
0.00
31.20
1.85
1781
5880
8.776470
TCTTTGTTATTTAGGACAGTAAAACCG
58.224
33.333
0.00
0.00
0.00
4.44
1782
5881
8.674263
TTTGTTATTTAGGACAGTAAAACCGA
57.326
30.769
0.00
0.00
0.00
4.69
1783
5882
7.894376
TGTTATTTAGGACAGTAAAACCGAG
57.106
36.000
0.00
0.00
0.00
4.63
1784
5883
6.369615
TGTTATTTAGGACAGTAAAACCGAGC
59.630
38.462
0.00
0.00
0.00
5.03
1785
5884
3.323751
TTAGGACAGTAAAACCGAGCC
57.676
47.619
0.00
0.00
0.00
4.70
1786
5885
1.053424
AGGACAGTAAAACCGAGCCA
58.947
50.000
0.00
0.00
0.00
4.75
1787
5886
1.154197
GGACAGTAAAACCGAGCCAC
58.846
55.000
0.00
0.00
0.00
5.01
1788
5887
1.270678
GGACAGTAAAACCGAGCCACT
60.271
52.381
0.00
0.00
0.00
4.00
1789
5888
2.490991
GACAGTAAAACCGAGCCACTT
58.509
47.619
0.00
0.00
0.00
3.16
1790
5889
2.479275
GACAGTAAAACCGAGCCACTTC
59.521
50.000
0.00
0.00
0.00
3.01
1791
5890
1.804748
CAGTAAAACCGAGCCACTTCC
59.195
52.381
0.00
0.00
0.00
3.46
1792
5891
0.794473
GTAAAACCGAGCCACTTCCG
59.206
55.000
0.00
0.00
0.00
4.30
1793
5892
0.680618
TAAAACCGAGCCACTTCCGA
59.319
50.000
0.00
0.00
0.00
4.55
1795
5894
3.591254
AACCGAGCCACTTCCGAGC
62.591
63.158
0.00
0.00
0.00
5.03
1796
5895
4.821589
CCGAGCCACTTCCGAGCC
62.822
72.222
0.00
0.00
0.00
4.70
1797
5896
4.069232
CGAGCCACTTCCGAGCCA
62.069
66.667
0.00
0.00
0.00
4.75
1798
5897
2.586792
GAGCCACTTCCGAGCCAT
59.413
61.111
0.00
0.00
0.00
4.40
1799
5898
1.522580
GAGCCACTTCCGAGCCATC
60.523
63.158
0.00
0.00
0.00
3.51
1800
5899
1.965754
GAGCCACTTCCGAGCCATCT
61.966
60.000
0.00
0.00
0.00
2.90
1801
5900
1.522580
GCCACTTCCGAGCCATCTC
60.523
63.158
0.00
0.00
35.99
2.75
1802
5901
1.900351
CCACTTCCGAGCCATCTCA
59.100
57.895
0.00
0.00
39.30
3.27
1803
5902
0.460987
CCACTTCCGAGCCATCTCAC
60.461
60.000
0.00
0.00
39.30
3.51
1804
5903
0.803768
CACTTCCGAGCCATCTCACG
60.804
60.000
0.00
0.00
39.30
4.35
1805
5904
0.965866
ACTTCCGAGCCATCTCACGA
60.966
55.000
0.00
0.00
39.30
4.35
1806
5905
0.387202
CTTCCGAGCCATCTCACGAT
59.613
55.000
0.00
0.00
39.30
3.73
1807
5906
0.824109
TTCCGAGCCATCTCACGATT
59.176
50.000
0.00
0.00
39.30
3.34
1808
5907
0.824109
TCCGAGCCATCTCACGATTT
59.176
50.000
0.00
0.00
39.30
2.17
1809
5908
0.933097
CCGAGCCATCTCACGATTTG
59.067
55.000
0.00
0.00
39.30
2.32
1810
5909
0.933097
CGAGCCATCTCACGATTTGG
59.067
55.000
0.00
0.00
39.30
3.28
1811
5910
1.303309
GAGCCATCTCACGATTTGGG
58.697
55.000
0.00
0.00
39.16
4.12
1812
5911
0.620556
AGCCATCTCACGATTTGGGT
59.379
50.000
0.00
0.00
0.00
4.51
1813
5912
1.837439
AGCCATCTCACGATTTGGGTA
59.163
47.619
0.00
0.00
0.00
3.69
1814
5913
2.238646
AGCCATCTCACGATTTGGGTAA
59.761
45.455
0.00
0.00
0.00
2.85
1815
5914
3.117888
AGCCATCTCACGATTTGGGTAAT
60.118
43.478
0.00
0.00
0.00
1.89
1816
5915
3.632145
GCCATCTCACGATTTGGGTAATT
59.368
43.478
0.00
0.00
0.00
1.40
1817
5916
4.097892
GCCATCTCACGATTTGGGTAATTT
59.902
41.667
0.00
0.00
0.00
1.82
1818
5917
5.394115
GCCATCTCACGATTTGGGTAATTTT
60.394
40.000
0.00
0.00
0.00
1.82
1819
5918
6.035843
CCATCTCACGATTTGGGTAATTTTG
58.964
40.000
0.00
0.00
0.00
2.44
1820
5919
5.637006
TCTCACGATTTGGGTAATTTTGG
57.363
39.130
0.00
0.00
0.00
3.28
1821
5920
4.082463
TCTCACGATTTGGGTAATTTTGGC
60.082
41.667
0.00
0.00
0.00
4.52
1822
5921
2.920490
CACGATTTGGGTAATTTTGGCG
59.080
45.455
0.00
0.00
0.00
5.69
1823
5922
2.094442
ACGATTTGGGTAATTTTGGCGG
60.094
45.455
0.00
0.00
0.00
6.13
1824
5923
2.094442
CGATTTGGGTAATTTTGGCGGT
60.094
45.455
0.00
0.00
0.00
5.68
1825
5924
3.517602
GATTTGGGTAATTTTGGCGGTC
58.482
45.455
0.00
0.00
0.00
4.79
1826
5925
1.996798
TTGGGTAATTTTGGCGGTCA
58.003
45.000
0.00
0.00
0.00
4.02
1827
5926
1.540267
TGGGTAATTTTGGCGGTCAG
58.460
50.000
0.00
0.00
0.00
3.51
1828
5927
1.074084
TGGGTAATTTTGGCGGTCAGA
59.926
47.619
0.00
0.00
0.00
3.27
1829
5928
2.291282
TGGGTAATTTTGGCGGTCAGAT
60.291
45.455
0.00
0.00
0.00
2.90
1830
5929
2.357952
GGGTAATTTTGGCGGTCAGATC
59.642
50.000
0.00
0.00
0.00
2.75
1831
5930
3.013921
GGTAATTTTGGCGGTCAGATCA
58.986
45.455
0.00
0.00
0.00
2.92
1832
5931
3.181500
GGTAATTTTGGCGGTCAGATCAC
60.181
47.826
0.00
0.00
0.00
3.06
1833
5932
2.198827
ATTTTGGCGGTCAGATCACA
57.801
45.000
0.00
0.00
0.00
3.58
1834
5933
1.522668
TTTTGGCGGTCAGATCACAG
58.477
50.000
0.00
0.00
0.00
3.66
1835
5934
0.321564
TTTGGCGGTCAGATCACAGG
60.322
55.000
0.00
0.00
0.00
4.00
1836
5935
1.480212
TTGGCGGTCAGATCACAGGT
61.480
55.000
0.00
0.00
0.00
4.00
1837
5936
1.296715
GGCGGTCAGATCACAGGTT
59.703
57.895
0.00
0.00
0.00
3.50
1838
5937
0.321653
GGCGGTCAGATCACAGGTTT
60.322
55.000
0.00
0.00
0.00
3.27
1839
5938
0.798776
GCGGTCAGATCACAGGTTTG
59.201
55.000
0.00
0.00
0.00
2.93
1840
5939
1.608025
GCGGTCAGATCACAGGTTTGA
60.608
52.381
0.00
0.00
0.00
2.69
1841
5940
2.341257
CGGTCAGATCACAGGTTTGAG
58.659
52.381
0.00
0.00
0.00
3.02
1842
5941
2.079925
GGTCAGATCACAGGTTTGAGC
58.920
52.381
0.00
0.00
31.76
4.26
1843
5942
2.550855
GGTCAGATCACAGGTTTGAGCA
60.551
50.000
0.00
0.00
34.19
4.26
1844
5943
3.341823
GTCAGATCACAGGTTTGAGCAT
58.658
45.455
0.00
0.00
34.19
3.79
1845
5944
3.373439
GTCAGATCACAGGTTTGAGCATC
59.627
47.826
0.00
0.00
34.19
3.91
1846
5945
2.681848
CAGATCACAGGTTTGAGCATCC
59.318
50.000
0.00
0.00
34.19
3.51
1847
5946
2.575279
AGATCACAGGTTTGAGCATCCT
59.425
45.455
0.00
0.00
34.19
3.24
1848
5947
2.479566
TCACAGGTTTGAGCATCCTC
57.520
50.000
0.00
0.00
38.62
3.71
1849
5948
1.081892
CACAGGTTTGAGCATCCTCG
58.918
55.000
0.00
0.00
41.13
4.63
1850
5949
0.036010
ACAGGTTTGAGCATCCTCGG
60.036
55.000
0.00
0.00
41.13
4.63
1851
5950
1.078143
AGGTTTGAGCATCCTCGGC
60.078
57.895
0.00
0.00
41.13
5.54
1852
5951
2.464459
GGTTTGAGCATCCTCGGCG
61.464
63.158
0.00
0.00
41.13
6.46
1853
5952
2.125147
TTTGAGCATCCTCGGCGG
60.125
61.111
7.21
0.00
41.13
6.13
1854
5953
2.954684
TTTGAGCATCCTCGGCGGT
61.955
57.895
7.21
0.00
41.13
5.68
1855
5954
2.852495
TTTGAGCATCCTCGGCGGTC
62.852
60.000
7.21
0.00
41.13
4.79
1856
5955
3.532155
GAGCATCCTCGGCGGTCT
61.532
66.667
7.21
0.00
36.08
3.85
1857
5956
3.781770
GAGCATCCTCGGCGGTCTG
62.782
68.421
7.21
0.99
36.08
3.51
1858
5957
3.838271
GCATCCTCGGCGGTCTGA
61.838
66.667
7.21
0.00
0.00
3.27
1859
5958
3.133014
CATCCTCGGCGGTCTGAT
58.867
61.111
7.21
1.16
0.00
2.90
1860
5959
1.006805
CATCCTCGGCGGTCTGATC
60.007
63.158
7.21
0.00
0.00
2.92
1861
5960
2.203771
ATCCTCGGCGGTCTGATCC
61.204
63.158
7.21
0.00
0.00
3.36
1862
5961
2.928988
ATCCTCGGCGGTCTGATCCA
62.929
60.000
7.21
0.00
0.00
3.41
1863
5962
2.502492
CCTCGGCGGTCTGATCCAT
61.502
63.158
7.21
0.00
0.00
3.41
1864
5963
1.006805
CTCGGCGGTCTGATCCATC
60.007
63.158
7.21
0.00
0.00
3.51
1865
5964
1.455773
TCGGCGGTCTGATCCATCT
60.456
57.895
7.21
0.00
0.00
2.90
1866
5965
1.043116
TCGGCGGTCTGATCCATCTT
61.043
55.000
7.21
0.00
0.00
2.40
1867
5966
0.598680
CGGCGGTCTGATCCATCTTC
60.599
60.000
0.00
0.00
0.00
2.87
1868
5967
0.465705
GGCGGTCTGATCCATCTTCA
59.534
55.000
0.00
0.00
0.00
3.02
1869
5968
1.134401
GGCGGTCTGATCCATCTTCAA
60.134
52.381
0.00
0.00
0.00
2.69
1870
5969
2.486191
GGCGGTCTGATCCATCTTCAAT
60.486
50.000
0.00
0.00
0.00
2.57
1871
5970
3.209410
GCGGTCTGATCCATCTTCAATT
58.791
45.455
0.00
0.00
0.00
2.32
1872
5971
3.629398
GCGGTCTGATCCATCTTCAATTT
59.371
43.478
0.00
0.00
0.00
1.82
1873
5972
4.497006
GCGGTCTGATCCATCTTCAATTTG
60.497
45.833
0.00
0.00
0.00
2.32
1874
5973
4.497006
CGGTCTGATCCATCTTCAATTTGC
60.497
45.833
0.00
0.00
0.00
3.68
1875
5974
4.497006
GGTCTGATCCATCTTCAATTTGCG
60.497
45.833
0.00
0.00
0.00
4.85
1876
5975
4.333649
GTCTGATCCATCTTCAATTTGCGA
59.666
41.667
0.00
0.00
0.00
5.10
1877
5976
4.943093
TCTGATCCATCTTCAATTTGCGAA
59.057
37.500
0.00
0.00
0.00
4.70
1878
5977
4.985413
TGATCCATCTTCAATTTGCGAAC
58.015
39.130
0.00
0.00
0.00
3.95
1879
5978
4.701651
TGATCCATCTTCAATTTGCGAACT
59.298
37.500
0.00
0.00
0.00
3.01
1880
5979
5.879777
TGATCCATCTTCAATTTGCGAACTA
59.120
36.000
0.00
0.00
0.00
2.24
1881
5980
5.801350
TCCATCTTCAATTTGCGAACTAG
57.199
39.130
0.00
0.00
0.00
2.57
1882
5981
4.635765
TCCATCTTCAATTTGCGAACTAGG
59.364
41.667
0.00
0.00
0.00
3.02
1883
5982
4.346129
CATCTTCAATTTGCGAACTAGGC
58.654
43.478
0.00
0.00
0.00
3.93
1884
5983
2.747446
TCTTCAATTTGCGAACTAGGCC
59.253
45.455
0.00
0.00
0.00
5.19
1885
5984
2.489938
TCAATTTGCGAACTAGGCCT
57.510
45.000
11.78
11.78
0.00
5.19
1886
5985
2.083774
TCAATTTGCGAACTAGGCCTG
58.916
47.619
17.99
8.18
0.00
4.85
1887
5986
1.812571
CAATTTGCGAACTAGGCCTGT
59.187
47.619
17.99
8.92
0.00
4.00
1888
5987
3.006940
CAATTTGCGAACTAGGCCTGTA
58.993
45.455
17.99
0.00
0.00
2.74
1889
5988
3.560636
ATTTGCGAACTAGGCCTGTAT
57.439
42.857
17.99
0.00
0.00
2.29
1890
5989
2.309528
TTGCGAACTAGGCCTGTATG
57.690
50.000
17.99
8.66
0.00
2.39
1891
5990
1.191535
TGCGAACTAGGCCTGTATGT
58.808
50.000
17.99
6.10
0.00
2.29
1921
6020
1.080434
GTTGACGAGCGCTCCTTCT
60.080
57.895
30.66
11.36
0.00
2.85
1940
6039
3.031013
TCTGGAGCCTCATAACGATCAA
58.969
45.455
0.00
0.00
0.00
2.57
2093
6254
1.897802
TCTTCCACCGGTCTTCCTTAC
59.102
52.381
2.59
0.00
0.00
2.34
2095
6256
0.906282
TCCACCGGTCTTCCTTACCC
60.906
60.000
2.59
0.00
33.10
3.69
2099
6260
1.350019
ACCGGTCTTCCTTACCCTTTG
59.650
52.381
0.00
0.00
33.10
2.77
2179
6603
0.387622
CCGCGAGAGTCACGGTTTTA
60.388
55.000
8.23
0.00
42.01
1.52
2181
6605
1.665161
CGCGAGAGTCACGGTTTTACT
60.665
52.381
11.95
0.00
0.00
2.24
2206
6717
2.030805
GTCAGAGGCACGATTTTGCTTT
60.031
45.455
0.00
0.00
42.56
3.51
2208
6719
1.541588
AGAGGCACGATTTTGCTTTCC
59.458
47.619
0.00
0.00
42.56
3.13
2218
6729
2.859165
TTTGCTTTCCCGAGAGTCAT
57.141
45.000
0.00
0.00
0.00
3.06
2220
6731
1.266178
TGCTTTCCCGAGAGTCATGA
58.734
50.000
0.00
0.00
0.00
3.07
2226
6737
1.313091
CCCGAGAGTCATGACCGTGA
61.313
60.000
22.21
0.00
0.00
4.35
2285
10909
2.765250
TTCTTCCGCGAGAGGCACAC
62.765
60.000
8.23
0.00
43.84
3.82
2399
11142
0.179067
TTTCACGAGAGGCACGGTTT
60.179
50.000
0.00
0.00
34.93
3.27
2437
11181
1.301716
GCTGTGCCTCTCGGAAACA
60.302
57.895
0.00
0.00
0.00
2.83
2438
11182
0.884704
GCTGTGCCTCTCGGAAACAA
60.885
55.000
0.00
0.00
30.80
2.83
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
6
7
3.924013
ATGTCCCCTCCGCACCTCA
62.924
63.158
0.00
0.00
0.00
3.86
326
331
2.363147
GTCGCTCCCTCTCCCAGT
60.363
66.667
0.00
0.00
0.00
4.00
439
445
1.203174
TCTCGATCCCCTGATGCCATA
60.203
52.381
0.00
0.00
0.00
2.74
442
448
1.670590
CTCTCGATCCCCTGATGCC
59.329
63.158
0.00
0.00
0.00
4.40
471
478
1.893786
AAAAAGCCACCACGCACAA
59.106
47.368
0.00
0.00
0.00
3.33
472
479
3.609703
AAAAAGCCACCACGCACA
58.390
50.000
0.00
0.00
0.00
4.57
508
515
4.649705
TCCCCTTCTCGCACCCCA
62.650
66.667
0.00
0.00
0.00
4.96
509
516
4.097361
GTCCCCTTCTCGCACCCC
62.097
72.222
0.00
0.00
0.00
4.95
510
517
4.452733
CGTCCCCTTCTCGCACCC
62.453
72.222
0.00
0.00
0.00
4.61
511
518
4.452733
CCGTCCCCTTCTCGCACC
62.453
72.222
0.00
0.00
0.00
5.01
512
519
2.444700
TTTCCGTCCCCTTCTCGCAC
62.445
60.000
0.00
0.00
0.00
5.34
513
520
1.760479
TTTTCCGTCCCCTTCTCGCA
61.760
55.000
0.00
0.00
0.00
5.10
514
521
0.604511
TTTTTCCGTCCCCTTCTCGC
60.605
55.000
0.00
0.00
0.00
5.03
515
522
3.618171
TTTTTCCGTCCCCTTCTCG
57.382
52.632
0.00
0.00
0.00
4.04
559
566
1.018910
CCACCACTTTCGTCCGTTTT
58.981
50.000
0.00
0.00
0.00
2.43
561
568
1.227734
CCCACCACTTTCGTCCGTT
60.228
57.895
0.00
0.00
0.00
4.44
562
569
2.135581
TCCCACCACTTTCGTCCGT
61.136
57.895
0.00
0.00
0.00
4.69
563
570
1.666872
GTCCCACCACTTTCGTCCG
60.667
63.158
0.00
0.00
0.00
4.79
572
579
2.229543
GGGTTTATTTTCGTCCCACCAC
59.770
50.000
0.00
0.00
38.15
4.16
594
601
1.891150
TCAGTTGGTAGTCTCCGTTCC
59.109
52.381
0.00
0.00
0.00
3.62
596
603
2.557490
GTCTCAGTTGGTAGTCTCCGTT
59.443
50.000
0.00
0.00
0.00
4.44
598
605
2.160205
TGTCTCAGTTGGTAGTCTCCG
58.840
52.381
0.00
0.00
0.00
4.63
599
606
4.810191
AATGTCTCAGTTGGTAGTCTCC
57.190
45.455
0.00
0.00
0.00
3.71
601
608
5.580998
TCCTAATGTCTCAGTTGGTAGTCT
58.419
41.667
0.00
0.00
0.00
3.24
680
688
9.755064
CGTCGAAAAACAAAGATATAGATGTTT
57.245
29.630
6.46
6.46
45.17
2.83
681
689
8.388103
CCGTCGAAAAACAAAGATATAGATGTT
58.612
33.333
0.00
0.00
37.59
2.71
682
690
7.465513
GCCGTCGAAAAACAAAGATATAGATGT
60.466
37.037
0.00
0.00
0.00
3.06
683
691
6.846283
GCCGTCGAAAAACAAAGATATAGATG
59.154
38.462
0.00
0.00
0.00
2.90
684
692
6.537301
TGCCGTCGAAAAACAAAGATATAGAT
59.463
34.615
0.00
0.00
0.00
1.98
685
693
5.870433
TGCCGTCGAAAAACAAAGATATAGA
59.130
36.000
0.00
0.00
0.00
1.98
686
694
6.102006
TGCCGTCGAAAAACAAAGATATAG
57.898
37.500
0.00
0.00
0.00
1.31
687
695
6.073167
TGTTGCCGTCGAAAAACAAAGATATA
60.073
34.615
0.00
0.00
29.96
0.86
688
696
5.151389
GTTGCCGTCGAAAAACAAAGATAT
58.849
37.500
0.00
0.00
0.00
1.63
689
697
4.035324
TGTTGCCGTCGAAAAACAAAGATA
59.965
37.500
0.00
0.00
29.96
1.98
690
698
3.181495
TGTTGCCGTCGAAAAACAAAGAT
60.181
39.130
0.00
0.00
29.96
2.40
691
699
2.161808
TGTTGCCGTCGAAAAACAAAGA
59.838
40.909
0.00
0.00
29.96
2.52
692
700
2.277834
GTGTTGCCGTCGAAAAACAAAG
59.722
45.455
8.33
0.00
34.54
2.77
693
701
2.251893
GTGTTGCCGTCGAAAAACAAA
58.748
42.857
8.33
0.00
34.54
2.83
694
702
1.199327
TGTGTTGCCGTCGAAAAACAA
59.801
42.857
8.33
0.00
34.54
2.83
695
703
0.803117
TGTGTTGCCGTCGAAAAACA
59.197
45.000
0.00
0.00
0.00
2.83
696
704
1.843753
CTTGTGTTGCCGTCGAAAAAC
59.156
47.619
0.00
0.00
0.00
2.43
697
705
1.202200
CCTTGTGTTGCCGTCGAAAAA
60.202
47.619
0.00
0.00
0.00
1.94
698
706
0.378962
CCTTGTGTTGCCGTCGAAAA
59.621
50.000
0.00
0.00
0.00
2.29
699
707
0.462225
TCCTTGTGTTGCCGTCGAAA
60.462
50.000
0.00
0.00
0.00
3.46
700
708
1.144276
TCCTTGTGTTGCCGTCGAA
59.856
52.632
0.00
0.00
0.00
3.71
701
709
1.593209
GTCCTTGTGTTGCCGTCGA
60.593
57.895
0.00
0.00
0.00
4.20
702
710
1.227999
ATGTCCTTGTGTTGCCGTCG
61.228
55.000
0.00
0.00
0.00
5.12
703
711
0.951558
AATGTCCTTGTGTTGCCGTC
59.048
50.000
0.00
0.00
0.00
4.79
704
712
0.951558
GAATGTCCTTGTGTTGCCGT
59.048
50.000
0.00
0.00
0.00
5.68
705
713
0.950836
TGAATGTCCTTGTGTTGCCG
59.049
50.000
0.00
0.00
0.00
5.69
706
714
2.821969
AGATGAATGTCCTTGTGTTGCC
59.178
45.455
0.00
0.00
0.00
4.52
707
715
4.697352
ACTAGATGAATGTCCTTGTGTTGC
59.303
41.667
0.00
0.00
0.00
4.17
708
716
5.934043
TCACTAGATGAATGTCCTTGTGTTG
59.066
40.000
0.00
0.00
35.93
3.33
709
717
6.114187
TCACTAGATGAATGTCCTTGTGTT
57.886
37.500
0.00
0.00
35.93
3.32
710
718
5.745312
TCACTAGATGAATGTCCTTGTGT
57.255
39.130
0.00
0.00
35.93
3.72
711
719
8.607459
GTTTATCACTAGATGAATGTCCTTGTG
58.393
37.037
0.00
0.00
41.93
3.33
712
720
8.321353
TGTTTATCACTAGATGAATGTCCTTGT
58.679
33.333
0.00
0.00
41.93
3.16
713
721
8.722480
TGTTTATCACTAGATGAATGTCCTTG
57.278
34.615
0.00
0.00
41.93
3.61
714
722
9.739276
TTTGTTTATCACTAGATGAATGTCCTT
57.261
29.630
0.00
0.00
41.93
3.36
715
723
9.167311
GTTTGTTTATCACTAGATGAATGTCCT
57.833
33.333
0.00
0.00
41.93
3.85
716
724
8.946085
TGTTTGTTTATCACTAGATGAATGTCC
58.054
33.333
0.00
0.00
41.93
4.02
743
751
9.449719
TGCACGAGTAGATATAGATATGAGAAA
57.550
33.333
0.00
0.00
0.00
2.52
744
752
9.620259
ATGCACGAGTAGATATAGATATGAGAA
57.380
33.333
0.00
0.00
0.00
2.87
785
793
9.518906
CACGAGTAGATATAGATATCACTACGT
57.481
37.037
5.32
15.74
41.21
3.57
786
794
8.481641
GCACGAGTAGATATAGATATCACTACG
58.518
40.741
5.32
15.34
41.21
3.51
895
905
6.151480
TGTGTTCTATGATGGTGTTCGTAGTA
59.849
38.462
0.00
0.00
36.82
1.82
934
945
3.086282
AGACGGTGTTGTCTTTTTGGTT
58.914
40.909
0.00
0.00
46.85
3.67
1127
1162
6.884187
ACGAACAATTAGTATGTGTGTGTTC
58.116
36.000
0.00
0.00
39.81
3.18
1137
1172
9.498176
ACAAAAGGAACTACGAACAATTAGTAT
57.502
29.630
0.00
0.00
38.49
2.12
1506
1563
9.496873
ACACATACACAAACAACTATAGCTTTA
57.503
29.630
0.00
0.00
0.00
1.85
1540
1609
7.581213
TTGGTTATTACAATGGGATGACATC
57.419
36.000
6.91
6.91
0.00
3.06
1543
1612
6.127479
TGCTTTGGTTATTACAATGGGATGAC
60.127
38.462
0.00
0.00
0.00
3.06
1580
5459
5.588648
GGAAATCATCTTATTCCACGGACAA
59.411
40.000
0.00
0.00
41.80
3.18
1656
5537
6.100714
TCTGTAGAGTGTTTAGGGGACTTTTT
59.899
38.462
0.00
0.00
43.67
1.94
1657
5538
5.605488
TCTGTAGAGTGTTTAGGGGACTTTT
59.395
40.000
0.00
0.00
43.67
2.27
1658
5539
5.152934
TCTGTAGAGTGTTTAGGGGACTTT
58.847
41.667
0.00
0.00
43.67
2.66
1660
5541
4.345854
CTCTGTAGAGTGTTTAGGGGACT
58.654
47.826
0.68
0.00
39.93
3.85
1661
5542
4.722361
CTCTGTAGAGTGTTTAGGGGAC
57.278
50.000
0.68
0.00
37.40
4.46
1674
5555
5.888982
AAACTTTCCAGGAACTCTGTAGA
57.111
39.130
0.00
0.00
41.83
2.59
1675
5556
7.361286
GCATAAAACTTTCCAGGAACTCTGTAG
60.361
40.741
0.00
0.00
41.83
2.74
1676
5557
6.430000
GCATAAAACTTTCCAGGAACTCTGTA
59.570
38.462
0.00
0.00
41.83
2.74
1678
5559
5.241506
TGCATAAAACTTTCCAGGAACTCTG
59.758
40.000
0.00
0.00
43.00
3.35
1680
5561
5.241728
ACTGCATAAAACTTTCCAGGAACTC
59.758
40.000
0.00
0.00
34.60
3.01
1681
5562
5.140454
ACTGCATAAAACTTTCCAGGAACT
58.860
37.500
0.00
0.00
43.88
3.01
1682
5563
5.453567
ACTGCATAAAACTTTCCAGGAAC
57.546
39.130
0.00
0.00
0.00
3.62
1683
5564
6.478512
AAACTGCATAAAACTTTCCAGGAA
57.521
33.333
0.00
0.00
0.00
3.36
1684
5565
6.323739
AGAAAACTGCATAAAACTTTCCAGGA
59.676
34.615
0.00
0.00
0.00
3.86
1685
5566
6.515832
AGAAAACTGCATAAAACTTTCCAGG
58.484
36.000
0.00
0.00
0.00
4.45
1756
5855
8.776470
TCGGTTTTACTGTCCTAAATAACAAAG
58.224
33.333
0.00
0.00
0.00
2.77
1760
5859
6.183360
GGCTCGGTTTTACTGTCCTAAATAAC
60.183
42.308
0.00
0.00
0.00
1.89
1763
5862
4.259356
GGCTCGGTTTTACTGTCCTAAAT
58.741
43.478
0.00
0.00
0.00
1.40
1765
5864
2.633967
TGGCTCGGTTTTACTGTCCTAA
59.366
45.455
0.00
0.00
0.00
2.69
1768
5867
1.154197
GTGGCTCGGTTTTACTGTCC
58.846
55.000
0.00
0.00
0.00
4.02
1769
5868
2.165319
AGTGGCTCGGTTTTACTGTC
57.835
50.000
0.00
0.00
0.00
3.51
1771
5870
1.804748
GGAAGTGGCTCGGTTTTACTG
59.195
52.381
0.00
0.00
0.00
2.74
1773
5872
0.794473
CGGAAGTGGCTCGGTTTTAC
59.206
55.000
0.00
0.00
0.00
2.01
1774
5873
0.680618
TCGGAAGTGGCTCGGTTTTA
59.319
50.000
0.00
0.00
0.00
1.52
1779
5878
4.821589
GGCTCGGAAGTGGCTCGG
62.822
72.222
0.00
0.00
45.32
4.63
1784
5883
0.460987
GTGAGATGGCTCGGAAGTGG
60.461
60.000
0.00
0.00
44.33
4.00
1785
5884
0.803768
CGTGAGATGGCTCGGAAGTG
60.804
60.000
0.00
0.00
44.33
3.16
1786
5885
0.965866
TCGTGAGATGGCTCGGAAGT
60.966
55.000
0.00
0.00
44.33
3.01
1787
5886
1.809869
TCGTGAGATGGCTCGGAAG
59.190
57.895
0.00
0.00
44.33
3.46
1788
5887
4.012138
TCGTGAGATGGCTCGGAA
57.988
55.556
0.00
0.00
44.33
4.30
1799
5898
4.173256
GCCAAAATTACCCAAATCGTGAG
58.827
43.478
0.00
0.00
0.00
3.51
1800
5899
3.366476
CGCCAAAATTACCCAAATCGTGA
60.366
43.478
0.00
0.00
0.00
4.35
1801
5900
2.920490
CGCCAAAATTACCCAAATCGTG
59.080
45.455
0.00
0.00
0.00
4.35
1802
5901
2.094442
CCGCCAAAATTACCCAAATCGT
60.094
45.455
0.00
0.00
0.00
3.73
1803
5902
2.094442
ACCGCCAAAATTACCCAAATCG
60.094
45.455
0.00
0.00
0.00
3.34
1804
5903
3.056465
TGACCGCCAAAATTACCCAAATC
60.056
43.478
0.00
0.00
0.00
2.17
1805
5904
2.900546
TGACCGCCAAAATTACCCAAAT
59.099
40.909
0.00
0.00
0.00
2.32
1806
5905
2.297597
CTGACCGCCAAAATTACCCAAA
59.702
45.455
0.00
0.00
0.00
3.28
1807
5906
1.889829
CTGACCGCCAAAATTACCCAA
59.110
47.619
0.00
0.00
0.00
4.12
1808
5907
1.074084
TCTGACCGCCAAAATTACCCA
59.926
47.619
0.00
0.00
0.00
4.51
1809
5908
1.828979
TCTGACCGCCAAAATTACCC
58.171
50.000
0.00
0.00
0.00
3.69
1810
5909
3.013921
TGATCTGACCGCCAAAATTACC
58.986
45.455
0.00
0.00
0.00
2.85
1811
5910
3.438781
TGTGATCTGACCGCCAAAATTAC
59.561
43.478
0.00
0.00
0.00
1.89
1812
5911
3.680490
TGTGATCTGACCGCCAAAATTA
58.320
40.909
0.00
0.00
0.00
1.40
1813
5912
2.489329
CTGTGATCTGACCGCCAAAATT
59.511
45.455
0.00
0.00
0.00
1.82
1814
5913
2.086869
CTGTGATCTGACCGCCAAAAT
58.913
47.619
0.00
0.00
0.00
1.82
1815
5914
1.522668
CTGTGATCTGACCGCCAAAA
58.477
50.000
0.00
0.00
0.00
2.44
1816
5915
0.321564
CCTGTGATCTGACCGCCAAA
60.322
55.000
0.00
0.00
0.00
3.28
1817
5916
1.296392
CCTGTGATCTGACCGCCAA
59.704
57.895
0.00
0.00
0.00
4.52
1818
5917
1.480212
AACCTGTGATCTGACCGCCA
61.480
55.000
0.00
0.00
0.00
5.69
1819
5918
0.321653
AAACCTGTGATCTGACCGCC
60.322
55.000
0.00
0.00
0.00
6.13
1820
5919
0.798776
CAAACCTGTGATCTGACCGC
59.201
55.000
0.00
0.00
0.00
5.68
1821
5920
2.341257
CTCAAACCTGTGATCTGACCG
58.659
52.381
0.00
0.00
0.00
4.79
1822
5921
2.079925
GCTCAAACCTGTGATCTGACC
58.920
52.381
0.00
0.00
0.00
4.02
1823
5922
2.771089
TGCTCAAACCTGTGATCTGAC
58.229
47.619
0.00
0.00
0.00
3.51
1824
5923
3.603532
GATGCTCAAACCTGTGATCTGA
58.396
45.455
0.00
0.00
0.00
3.27
1825
5924
2.681848
GGATGCTCAAACCTGTGATCTG
59.318
50.000
0.00
0.00
0.00
2.90
1826
5925
2.575279
AGGATGCTCAAACCTGTGATCT
59.425
45.455
0.00
0.00
32.39
2.75
1827
5926
2.941720
GAGGATGCTCAAACCTGTGATC
59.058
50.000
9.69
0.00
33.89
2.92
1828
5927
2.679059
CGAGGATGCTCAAACCTGTGAT
60.679
50.000
15.10
0.00
33.89
3.06
1829
5928
1.338105
CGAGGATGCTCAAACCTGTGA
60.338
52.381
15.10
0.00
33.89
3.58
1830
5929
1.081892
CGAGGATGCTCAAACCTGTG
58.918
55.000
15.10
0.00
33.89
3.66
1831
5930
0.036010
CCGAGGATGCTCAAACCTGT
60.036
55.000
15.10
0.00
33.89
4.00
1832
5931
1.372087
GCCGAGGATGCTCAAACCTG
61.372
60.000
15.10
0.00
33.89
4.00
1833
5932
1.078143
GCCGAGGATGCTCAAACCT
60.078
57.895
15.10
0.00
36.68
3.50
1834
5933
2.464459
CGCCGAGGATGCTCAAACC
61.464
63.158
15.10
0.00
0.00
3.27
1835
5934
2.464459
CCGCCGAGGATGCTCAAAC
61.464
63.158
15.10
1.75
45.00
2.93
1836
5935
2.125147
CCGCCGAGGATGCTCAAA
60.125
61.111
15.10
0.00
45.00
2.69
1837
5936
3.371097
GACCGCCGAGGATGCTCAA
62.371
63.158
15.10
0.00
45.00
3.02
1838
5937
3.838271
GACCGCCGAGGATGCTCA
61.838
66.667
15.10
0.00
45.00
4.26
1839
5938
3.532155
AGACCGCCGAGGATGCTC
61.532
66.667
3.74
3.74
45.00
4.26
1840
5939
3.842923
CAGACCGCCGAGGATGCT
61.843
66.667
3.89
0.00
45.00
3.79
1841
5940
3.157217
ATCAGACCGCCGAGGATGC
62.157
63.158
3.89
0.00
45.00
3.91
1842
5941
1.006805
GATCAGACCGCCGAGGATG
60.007
63.158
3.89
3.02
45.00
3.51
1843
5942
2.203771
GGATCAGACCGCCGAGGAT
61.204
63.158
3.89
0.00
45.00
3.24
1844
5943
2.833582
GGATCAGACCGCCGAGGA
60.834
66.667
3.89
0.00
45.00
3.71
1846
5945
1.006805
GATGGATCAGACCGCCGAG
60.007
63.158
0.00
0.00
0.00
4.63
1847
5946
1.043116
AAGATGGATCAGACCGCCGA
61.043
55.000
0.00
0.00
0.00
5.54
1848
5947
0.598680
GAAGATGGATCAGACCGCCG
60.599
60.000
0.00
0.00
0.00
6.46
1849
5948
0.465705
TGAAGATGGATCAGACCGCC
59.534
55.000
0.00
0.00
0.00
6.13
1850
5949
2.315925
TTGAAGATGGATCAGACCGC
57.684
50.000
0.00
0.00
0.00
5.68
1851
5950
4.497006
GCAAATTGAAGATGGATCAGACCG
60.497
45.833
0.00
0.00
0.00
4.79
1852
5951
4.497006
CGCAAATTGAAGATGGATCAGACC
60.497
45.833
0.00
0.00
0.00
3.85
1853
5952
4.333649
TCGCAAATTGAAGATGGATCAGAC
59.666
41.667
0.00
0.00
0.00
3.51
1854
5953
4.516323
TCGCAAATTGAAGATGGATCAGA
58.484
39.130
0.00
0.00
0.00
3.27
1855
5954
4.888038
TCGCAAATTGAAGATGGATCAG
57.112
40.909
0.00
0.00
0.00
2.90
1856
5955
4.701651
AGTTCGCAAATTGAAGATGGATCA
59.298
37.500
0.00
0.00
0.00
2.92
1857
5956
5.240713
AGTTCGCAAATTGAAGATGGATC
57.759
39.130
0.00
0.00
0.00
3.36
1858
5957
5.297776
CCTAGTTCGCAAATTGAAGATGGAT
59.702
40.000
0.00
0.00
0.00
3.41
1859
5958
4.635765
CCTAGTTCGCAAATTGAAGATGGA
59.364
41.667
0.00
0.00
0.00
3.41
1860
5959
4.731773
GCCTAGTTCGCAAATTGAAGATGG
60.732
45.833
0.00
0.00
0.00
3.51
1861
5960
4.346129
GCCTAGTTCGCAAATTGAAGATG
58.654
43.478
0.00
0.00
0.00
2.90
1862
5961
3.378427
GGCCTAGTTCGCAAATTGAAGAT
59.622
43.478
0.00
0.00
0.00
2.40
1863
5962
2.747446
GGCCTAGTTCGCAAATTGAAGA
59.253
45.455
0.00
0.00
0.00
2.87
1864
5963
2.749621
AGGCCTAGTTCGCAAATTGAAG
59.250
45.455
1.29
0.00
0.00
3.02
1865
5964
2.487762
CAGGCCTAGTTCGCAAATTGAA
59.512
45.455
3.98
0.00
0.00
2.69
1866
5965
2.083774
CAGGCCTAGTTCGCAAATTGA
58.916
47.619
3.98
0.00
0.00
2.57
1867
5966
1.812571
ACAGGCCTAGTTCGCAAATTG
59.187
47.619
3.98
0.00
0.00
2.32
1868
5967
2.200373
ACAGGCCTAGTTCGCAAATT
57.800
45.000
3.98
0.00
0.00
1.82
1869
5968
3.206150
CATACAGGCCTAGTTCGCAAAT
58.794
45.455
3.98
0.00
0.00
2.32
1870
5969
2.027561
ACATACAGGCCTAGTTCGCAAA
60.028
45.455
3.98
0.00
0.00
3.68
1871
5970
1.553248
ACATACAGGCCTAGTTCGCAA
59.447
47.619
3.98
0.00
0.00
4.85
1872
5971
1.134818
CACATACAGGCCTAGTTCGCA
60.135
52.381
3.98
0.00
0.00
5.10
1873
5972
1.571919
CACATACAGGCCTAGTTCGC
58.428
55.000
3.98
0.00
0.00
4.70
1874
5973
1.202533
CCCACATACAGGCCTAGTTCG
60.203
57.143
3.98
0.00
0.00
3.95
1875
5974
2.103263
CTCCCACATACAGGCCTAGTTC
59.897
54.545
3.98
0.00
0.00
3.01
1876
5975
2.119495
CTCCCACATACAGGCCTAGTT
58.881
52.381
3.98
0.00
0.00
2.24
1877
5976
1.794714
CTCCCACATACAGGCCTAGT
58.205
55.000
3.98
9.15
0.00
2.57
1878
5977
0.394565
GCTCCCACATACAGGCCTAG
59.605
60.000
3.98
2.19
0.00
3.02
1879
5978
0.326143
TGCTCCCACATACAGGCCTA
60.326
55.000
3.98
0.00
0.00
3.93
1880
5979
1.207488
TTGCTCCCACATACAGGCCT
61.207
55.000
0.00
0.00
0.00
5.19
1881
5980
1.032114
GTTGCTCCCACATACAGGCC
61.032
60.000
0.00
0.00
0.00
5.19
1882
5981
0.035056
AGTTGCTCCCACATACAGGC
60.035
55.000
0.00
0.00
0.00
4.85
1883
5982
2.501723
ACTAGTTGCTCCCACATACAGG
59.498
50.000
0.00
0.00
0.00
4.00
1884
5983
3.895232
ACTAGTTGCTCCCACATACAG
57.105
47.619
0.00
0.00
0.00
2.74
1885
5984
3.580895
TCAACTAGTTGCTCCCACATACA
59.419
43.478
27.49
5.99
40.24
2.29
1886
5985
3.933332
GTCAACTAGTTGCTCCCACATAC
59.067
47.826
27.49
14.79
40.24
2.39
1887
5986
3.368013
CGTCAACTAGTTGCTCCCACATA
60.368
47.826
27.49
7.19
40.24
2.29
1888
5987
2.612972
CGTCAACTAGTTGCTCCCACAT
60.613
50.000
27.49
0.00
40.24
3.21
1889
5988
1.270094
CGTCAACTAGTTGCTCCCACA
60.270
52.381
27.49
8.59
40.24
4.17
1890
5989
1.000506
TCGTCAACTAGTTGCTCCCAC
59.999
52.381
27.49
19.19
40.24
4.61
1891
5990
1.272490
CTCGTCAACTAGTTGCTCCCA
59.728
52.381
27.49
10.00
40.24
4.37
1921
6020
2.481276
CGTTGATCGTTATGAGGCTCCA
60.481
50.000
12.86
0.18
34.52
3.86
1930
6029
2.006888
CCAAGTGGCGTTGATCGTTAT
58.993
47.619
1.19
0.00
42.13
1.89
2074
6235
1.066358
GGTAAGGAAGACCGGTGGAAG
60.066
57.143
14.63
0.00
41.83
3.46
2181
6605
0.320374
AAATCGTGCCTCTGACGGAA
59.680
50.000
0.00
0.00
37.43
4.30
2185
6609
1.160137
AGCAAAATCGTGCCTCTGAC
58.840
50.000
0.00
0.00
46.14
3.51
2187
6611
2.589014
GAAAGCAAAATCGTGCCTCTG
58.411
47.619
0.00
0.00
46.14
3.35
2206
6717
1.001269
ACGGTCATGACTCTCGGGA
60.001
57.895
24.50
0.00
0.00
5.14
2208
6719
0.179161
GTCACGGTCATGACTCTCGG
60.179
60.000
24.50
13.35
44.71
4.63
2271
6888
3.114616
CAAGTGTGCCTCTCGCGG
61.115
66.667
6.13
0.00
42.08
6.46
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.