Multiple sequence alignment - TraesCS6D01G106300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G106300 chr6D 100.000 1409 0 0 1 1409 69504179 69502771 0.000000e+00 2603
1 TraesCS6D01G106300 chr6D 97.378 1411 30 5 1 1409 153176517 153175112 0.000000e+00 2394
2 TraesCS6D01G106300 chr6D 100.000 710 0 0 1630 2339 69502550 69501841 0.000000e+00 1312
3 TraesCS6D01G106300 chr6D 97.403 154 4 0 1650 1803 390413880 390413727 1.780000e-66 263
4 TraesCS6D01G106300 chr7D 98.654 1412 12 3 1 1409 274862408 274861001 0.000000e+00 2495
5 TraesCS6D01G106300 chr7D 97.452 157 4 0 1647 1803 269906170 269906014 3.830000e-68 268
6 TraesCS6D01G106300 chr7D 97.452 157 4 0 1647 1803 273360697 273360853 3.830000e-68 268
7 TraesCS6D01G106300 chr4D 98.297 1409 20 2 1 1409 270688062 270689466 0.000000e+00 2466
8 TraesCS6D01G106300 chr4D 97.452 157 4 0 1647 1803 382061243 382061399 3.830000e-68 268
9 TraesCS6D01G106300 chr4D 96.815 157 5 0 1647 1803 354606558 354606714 1.780000e-66 263
10 TraesCS6D01G106300 chr4D 97.403 154 3 1 1650 1803 75181263 75181111 6.410000e-66 261
11 TraesCS6D01G106300 chr1D 97.236 1411 37 1 1 1409 480940195 480938785 0.000000e+00 2388
12 TraesCS6D01G106300 chr1D 86.280 1414 183 9 1 1409 452586842 452585435 0.000000e+00 1526
13 TraesCS6D01G106300 chr1D 85.926 1414 186 12 1 1409 452581292 452579887 0.000000e+00 1496
14 TraesCS6D01G106300 chr1D 96.815 157 5 0 1647 1803 280914127 280914283 1.780000e-66 263
15 TraesCS6D01G106300 chr4A 93.759 1410 85 3 1 1409 521299093 521300500 0.000000e+00 2113
16 TraesCS6D01G106300 chr4A 90.703 1409 130 1 1 1409 429502174 429503581 0.000000e+00 1875
17 TraesCS6D01G106300 chr1A 86.276 1399 187 5 13 1409 544569061 544570456 0.000000e+00 1515
18 TraesCS6D01G106300 chr5A 79.924 528 71 15 1799 2315 384434234 384434737 2.860000e-94 355
19 TraesCS6D01G106300 chr5A 98.052 154 3 0 1650 1803 196284713 196284560 3.830000e-68 268
20 TraesCS6D01G106300 chr2A 98.052 154 3 0 1650 1803 636548494 636548341 3.830000e-68 268
21 TraesCS6D01G106300 chr2B 87.234 94 11 1 1804 1897 121555050 121554958 3.180000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G106300 chr6D 69501841 69504179 2338 True 1957.5 2603 100.000 1 2339 2 chr6D.!!$R3 2338
1 TraesCS6D01G106300 chr6D 153175112 153176517 1405 True 2394.0 2394 97.378 1 1409 1 chr6D.!!$R1 1408
2 TraesCS6D01G106300 chr7D 274861001 274862408 1407 True 2495.0 2495 98.654 1 1409 1 chr7D.!!$R2 1408
3 TraesCS6D01G106300 chr4D 270688062 270689466 1404 False 2466.0 2466 98.297 1 1409 1 chr4D.!!$F1 1408
4 TraesCS6D01G106300 chr1D 480938785 480940195 1410 True 2388.0 2388 97.236 1 1409 1 chr1D.!!$R3 1408
5 TraesCS6D01G106300 chr1D 452585435 452586842 1407 True 1526.0 1526 86.280 1 1409 1 chr1D.!!$R2 1408
6 TraesCS6D01G106300 chr1D 452579887 452581292 1405 True 1496.0 1496 85.926 1 1409 1 chr1D.!!$R1 1408
7 TraesCS6D01G106300 chr4A 521299093 521300500 1407 False 2113.0 2113 93.759 1 1409 1 chr4A.!!$F2 1408
8 TraesCS6D01G106300 chr4A 429502174 429503581 1407 False 1875.0 1875 90.703 1 1409 1 chr4A.!!$F1 1408
9 TraesCS6D01G106300 chr1A 544569061 544570456 1395 False 1515.0 1515 86.276 13 1409 1 chr1A.!!$F1 1396
10 TraesCS6D01G106300 chr5A 384434234 384434737 503 False 355.0 355 79.924 1799 2315 1 chr5A.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 296 0.470833 AGCTAGATGCCATCCGGAGT 60.471 55.0 11.34 0.0 44.23 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1701 0.03582 AAGGAATCCGCGCCTTGTTA 60.036 50.0 13.94 0.0 42.67 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 296 0.470833 AGCTAGATGCCATCCGGAGT 60.471 55.000 11.34 0.00 44.23 3.85
467 472 1.549037 GCAACACCCAAACATCCCCTA 60.549 52.381 0.00 0.00 0.00 3.53
740 745 2.808543 CCAGCTTATTATCGAACCTGCC 59.191 50.000 0.00 0.00 0.00 4.85
908 916 1.062886 TGATGACTCCTTCGATCCCCT 60.063 52.381 0.00 0.00 0.00 4.79
949 957 4.106029 TCTAAGGTTCCGATCAAAGTCG 57.894 45.455 0.00 0.00 41.13 4.18
1139 1148 0.102120 CTGTCTGCTCCGACATCTCC 59.898 60.000 4.90 0.00 42.51 3.71
1669 1682 9.743057 AAGAGTAGATGAGACAAAAGATATTCG 57.257 33.333 0.00 0.00 0.00 3.34
1670 1683 9.126151 AGAGTAGATGAGACAAAAGATATTCGA 57.874 33.333 0.00 0.00 0.00 3.71
1671 1684 9.393249 GAGTAGATGAGACAAAAGATATTCGAG 57.607 37.037 0.00 0.00 0.00 4.04
1672 1685 7.865385 AGTAGATGAGACAAAAGATATTCGAGC 59.135 37.037 0.00 0.00 0.00 5.03
1673 1686 6.815089 AGATGAGACAAAAGATATTCGAGCT 58.185 36.000 0.00 0.00 0.00 4.09
1674 1687 7.271511 AGATGAGACAAAAGATATTCGAGCTT 58.728 34.615 0.00 0.00 34.42 3.74
1675 1688 6.653273 TGAGACAAAAGATATTCGAGCTTG 57.347 37.500 0.00 0.00 32.89 4.01
1676 1689 6.398095 TGAGACAAAAGATATTCGAGCTTGA 58.602 36.000 0.00 0.00 32.89 3.02
1677 1690 6.873605 TGAGACAAAAGATATTCGAGCTTGAA 59.126 34.615 18.73 18.73 32.89 2.69
1678 1691 7.387673 TGAGACAAAAGATATTCGAGCTTGAAA 59.612 33.333 20.22 10.17 32.89 2.69
1679 1692 8.099364 AGACAAAAGATATTCGAGCTTGAAAA 57.901 30.769 20.22 0.00 32.89 2.29
1680 1693 8.734386 AGACAAAAGATATTCGAGCTTGAAAAT 58.266 29.630 20.22 7.71 32.89 1.82
1681 1694 9.346725 GACAAAAGATATTCGAGCTTGAAAATT 57.653 29.630 20.22 6.98 32.89 1.82
1682 1695 9.696917 ACAAAAGATATTCGAGCTTGAAAATTT 57.303 25.926 20.22 14.36 32.89 1.82
1684 1697 8.606727 AAAGATATTCGAGCTTGAAAATTTCG 57.393 30.769 20.22 0.00 32.89 3.46
1685 1698 6.719365 AGATATTCGAGCTTGAAAATTTCGG 58.281 36.000 20.22 0.00 33.93 4.30
1686 1699 3.552604 TTCGAGCTTGAAAATTTCGGG 57.447 42.857 14.27 0.00 33.93 5.14
1687 1700 2.773487 TCGAGCTTGAAAATTTCGGGA 58.227 42.857 0.00 0.00 33.93 5.14
1688 1701 3.343617 TCGAGCTTGAAAATTTCGGGAT 58.656 40.909 0.00 0.00 33.93 3.85
1689 1702 4.509616 TCGAGCTTGAAAATTTCGGGATA 58.490 39.130 0.00 0.00 33.93 2.59
1690 1703 4.938832 TCGAGCTTGAAAATTTCGGGATAA 59.061 37.500 0.00 0.00 33.93 1.75
1691 1704 5.028375 CGAGCTTGAAAATTTCGGGATAAC 58.972 41.667 0.00 0.00 30.86 1.89
1692 1705 5.391523 CGAGCTTGAAAATTTCGGGATAACA 60.392 40.000 0.00 0.00 30.86 2.41
1693 1706 6.339587 AGCTTGAAAATTTCGGGATAACAA 57.660 33.333 0.97 0.00 0.00 2.83
1694 1707 6.389906 AGCTTGAAAATTTCGGGATAACAAG 58.610 36.000 0.97 0.00 36.39 3.16
1695 1708 5.576774 GCTTGAAAATTTCGGGATAACAAGG 59.423 40.000 0.00 0.00 34.69 3.61
1696 1709 5.066968 TGAAAATTTCGGGATAACAAGGC 57.933 39.130 0.97 0.00 0.00 4.35
1697 1710 3.775661 AAATTTCGGGATAACAAGGCG 57.224 42.857 0.00 0.00 0.00 5.52
1698 1711 1.021968 ATTTCGGGATAACAAGGCGC 58.978 50.000 0.00 0.00 0.00 6.53
1699 1712 1.363145 TTTCGGGATAACAAGGCGCG 61.363 55.000 0.00 0.00 39.00 6.86
1700 1713 3.269347 CGGGATAACAAGGCGCGG 61.269 66.667 8.83 0.00 34.84 6.46
1701 1714 2.188469 GGGATAACAAGGCGCGGA 59.812 61.111 8.83 0.00 0.00 5.54
1702 1715 1.227853 GGGATAACAAGGCGCGGAT 60.228 57.895 8.83 0.00 0.00 4.18
1703 1716 0.818040 GGGATAACAAGGCGCGGATT 60.818 55.000 8.83 0.00 0.00 3.01
1704 1717 0.586802 GGATAACAAGGCGCGGATTC 59.413 55.000 8.83 0.00 0.00 2.52
1705 1718 0.586802 GATAACAAGGCGCGGATTCC 59.413 55.000 8.83 0.00 0.00 3.01
1706 1719 0.180406 ATAACAAGGCGCGGATTCCT 59.820 50.000 8.83 1.87 0.00 3.36
1707 1720 0.035820 TAACAAGGCGCGGATTCCTT 60.036 50.000 8.83 9.30 43.06 3.36
1709 1722 2.351276 AAGGCGCGGATTCCTTGT 59.649 55.556 13.94 0.00 40.90 3.16
1710 1723 1.303317 AAGGCGCGGATTCCTTGTT 60.303 52.632 13.94 0.00 40.90 2.83
1711 1724 1.305930 AAGGCGCGGATTCCTTGTTC 61.306 55.000 13.94 0.00 40.90 3.18
1712 1725 2.399611 GCGCGGATTCCTTGTTCG 59.600 61.111 8.83 0.00 0.00 3.95
1713 1726 3.089784 CGCGGATTCCTTGTTCGG 58.910 61.111 0.00 0.00 0.00 4.30
1714 1727 2.791927 GCGGATTCCTTGTTCGGC 59.208 61.111 0.30 0.00 0.00 5.54
1715 1728 2.038269 GCGGATTCCTTGTTCGGCA 61.038 57.895 0.30 0.00 37.90 5.69
1716 1729 1.982073 GCGGATTCCTTGTTCGGCAG 61.982 60.000 0.30 0.00 37.90 4.85
1717 1730 0.391130 CGGATTCCTTGTTCGGCAGA 60.391 55.000 0.30 0.00 0.00 4.26
1718 1731 1.821216 GGATTCCTTGTTCGGCAGAA 58.179 50.000 0.00 0.00 0.00 3.02
1729 1742 3.595709 TTCGGCAGAACAAACTTAACG 57.404 42.857 0.00 0.00 0.00 3.18
1730 1743 2.553086 TCGGCAGAACAAACTTAACGT 58.447 42.857 0.00 0.00 0.00 3.99
1731 1744 2.285756 TCGGCAGAACAAACTTAACGTG 59.714 45.455 0.00 0.00 0.00 4.49
1732 1745 2.031191 CGGCAGAACAAACTTAACGTGT 59.969 45.455 0.00 0.00 0.00 4.49
1733 1746 3.245754 CGGCAGAACAAACTTAACGTGTA 59.754 43.478 0.00 0.00 0.00 2.90
1734 1747 4.521010 GGCAGAACAAACTTAACGTGTAC 58.479 43.478 0.00 0.00 0.00 2.90
1735 1748 4.034279 GGCAGAACAAACTTAACGTGTACA 59.966 41.667 0.00 0.00 0.00 2.90
1736 1749 5.447548 GGCAGAACAAACTTAACGTGTACAA 60.448 40.000 0.00 0.00 0.00 2.41
1737 1750 6.022821 GCAGAACAAACTTAACGTGTACAAA 58.977 36.000 0.00 0.00 0.00 2.83
1738 1751 6.523893 GCAGAACAAACTTAACGTGTACAAAA 59.476 34.615 0.00 0.00 0.00 2.44
1739 1752 7.060864 GCAGAACAAACTTAACGTGTACAAAAA 59.939 33.333 0.00 0.00 0.00 1.94
1769 1782 9.950496 AATTTATACAAGACACAAGAGAGTCAT 57.050 29.630 0.00 0.00 37.75 3.06
1770 1783 8.763049 TTTATACAAGACACAAGAGAGTCATG 57.237 34.615 0.00 0.00 39.09 3.07
1771 1784 4.679373 ACAAGACACAAGAGAGTCATGT 57.321 40.909 0.00 0.00 40.63 3.21
1772 1785 4.626042 ACAAGACACAAGAGAGTCATGTC 58.374 43.478 0.00 0.00 41.24 3.06
1773 1786 3.951775 AGACACAAGAGAGTCATGTCC 57.048 47.619 0.00 0.00 40.45 4.02
1774 1787 2.564947 AGACACAAGAGAGTCATGTCCC 59.435 50.000 0.00 0.00 40.45 4.46
1775 1788 1.625818 ACACAAGAGAGTCATGTCCCC 59.374 52.381 0.00 0.00 0.00 4.81
1776 1789 1.905215 CACAAGAGAGTCATGTCCCCT 59.095 52.381 0.00 0.00 0.00 4.79
1777 1790 2.304180 CACAAGAGAGTCATGTCCCCTT 59.696 50.000 0.00 0.00 0.00 3.95
1778 1791 2.982488 ACAAGAGAGTCATGTCCCCTTT 59.018 45.455 0.00 0.00 0.00 3.11
1779 1792 3.395941 ACAAGAGAGTCATGTCCCCTTTT 59.604 43.478 0.00 0.00 0.00 2.27
1780 1793 4.597507 ACAAGAGAGTCATGTCCCCTTTTA 59.402 41.667 0.00 0.00 0.00 1.52
1781 1794 4.828072 AGAGAGTCATGTCCCCTTTTAC 57.172 45.455 0.00 0.00 0.00 2.01
1782 1795 4.430441 AGAGAGTCATGTCCCCTTTTACT 58.570 43.478 0.00 0.00 0.00 2.24
1783 1796 5.590818 AGAGAGTCATGTCCCCTTTTACTA 58.409 41.667 0.00 0.00 0.00 1.82
1784 1797 6.206042 AGAGAGTCATGTCCCCTTTTACTAT 58.794 40.000 0.00 0.00 0.00 2.12
1785 1798 7.363031 AGAGAGTCATGTCCCCTTTTACTATA 58.637 38.462 0.00 0.00 0.00 1.31
1786 1799 8.013667 AGAGAGTCATGTCCCCTTTTACTATAT 58.986 37.037 0.00 0.00 0.00 0.86
1787 1800 8.568617 AGAGTCATGTCCCCTTTTACTATATT 57.431 34.615 0.00 0.00 0.00 1.28
1788 1801 8.432805 AGAGTCATGTCCCCTTTTACTATATTG 58.567 37.037 0.00 0.00 0.00 1.90
1789 1802 6.998673 AGTCATGTCCCCTTTTACTATATTGC 59.001 38.462 0.00 0.00 0.00 3.56
1790 1803 6.998673 GTCATGTCCCCTTTTACTATATTGCT 59.001 38.462 0.00 0.00 0.00 3.91
1791 1804 8.154856 GTCATGTCCCCTTTTACTATATTGCTA 58.845 37.037 0.00 0.00 0.00 3.49
1792 1805 8.890472 TCATGTCCCCTTTTACTATATTGCTAT 58.110 33.333 0.00 0.00 0.00 2.97
1795 1808 9.610104 TGTCCCCTTTTACTATATTGCTATAGA 57.390 33.333 3.21 0.00 39.40 1.98
1898 1911 8.893563 TCAGAAACATCCAACCCTTAATTTAT 57.106 30.769 0.00 0.00 0.00 1.40
1929 1944 6.753107 AAAAATGACCCGTTAGATCGAAAT 57.247 33.333 0.00 0.00 0.00 2.17
1930 1945 6.753107 AAAATGACCCGTTAGATCGAAATT 57.247 33.333 0.00 0.00 0.00 1.82
1931 1946 5.986004 AATGACCCGTTAGATCGAAATTC 57.014 39.130 0.00 0.00 0.00 2.17
1932 1947 3.788937 TGACCCGTTAGATCGAAATTCC 58.211 45.455 0.00 0.00 0.00 3.01
1933 1948 3.129109 GACCCGTTAGATCGAAATTCCC 58.871 50.000 0.00 0.00 0.00 3.97
1934 1949 2.770232 ACCCGTTAGATCGAAATTCCCT 59.230 45.455 0.00 0.00 0.00 4.20
1935 1950 3.962718 ACCCGTTAGATCGAAATTCCCTA 59.037 43.478 0.00 0.00 0.00 3.53
1936 1951 4.202192 ACCCGTTAGATCGAAATTCCCTAC 60.202 45.833 0.00 0.00 0.00 3.18
1937 1952 4.202182 CCCGTTAGATCGAAATTCCCTACA 60.202 45.833 0.00 0.00 0.00 2.74
1938 1953 5.353938 CCGTTAGATCGAAATTCCCTACAA 58.646 41.667 0.00 0.00 0.00 2.41
1939 1954 5.813672 CCGTTAGATCGAAATTCCCTACAAA 59.186 40.000 0.00 0.00 0.00 2.83
1940 1955 6.314400 CCGTTAGATCGAAATTCCCTACAAAA 59.686 38.462 0.00 0.00 0.00 2.44
1941 1956 7.148373 CCGTTAGATCGAAATTCCCTACAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
1981 1996 5.354792 TGAATAAATTACCCACTAACGCCAC 59.645 40.000 0.00 0.00 0.00 5.01
1982 1997 1.729284 AATTACCCACTAACGCCACG 58.271 50.000 0.00 0.00 0.00 4.94
2007 2022 4.759516 AAAAATCACACATCCACGGTAC 57.240 40.909 0.00 0.00 0.00 3.34
2008 2023 3.410631 AAATCACACATCCACGGTACA 57.589 42.857 0.00 0.00 0.00 2.90
2027 2042 2.807107 CGCCAGCAGCCCCTGTATA 61.807 63.158 0.00 0.00 38.78 1.47
2040 2055 3.980698 CCCCTGTATAATCCTCCTCCAAA 59.019 47.826 0.00 0.00 0.00 3.28
2043 2058 4.660771 CCTGTATAATCCTCCTCCAAACCT 59.339 45.833 0.00 0.00 0.00 3.50
2049 2064 9.642343 GTATAATCCTCCTCCAAACCTTAAAAT 57.358 33.333 0.00 0.00 0.00 1.82
2052 2067 6.457159 TCCTCCTCCAAACCTTAAAATACA 57.543 37.500 0.00 0.00 0.00 2.29
2064 2079 8.904099 AACCTTAAAATACATAATCCTCCTCG 57.096 34.615 0.00 0.00 0.00 4.63
2073 2088 0.325671 AATCCTCCTCGAAGCCCTCA 60.326 55.000 0.00 0.00 0.00 3.86
2076 2091 1.333636 CCTCCTCGAAGCCCTCACAT 61.334 60.000 0.00 0.00 0.00 3.21
2078 2093 1.067821 CTCCTCGAAGCCCTCACATAC 59.932 57.143 0.00 0.00 0.00 2.39
2081 2096 1.204704 CTCGAAGCCCTCACATACACA 59.795 52.381 0.00 0.00 0.00 3.72
2082 2097 1.067142 TCGAAGCCCTCACATACACAC 60.067 52.381 0.00 0.00 0.00 3.82
2083 2098 1.739067 GAAGCCCTCACATACACACC 58.261 55.000 0.00 0.00 0.00 4.16
2084 2099 0.036388 AAGCCCTCACATACACACCG 60.036 55.000 0.00 0.00 0.00 4.94
2086 2101 1.449601 CCCTCACATACACACCGGC 60.450 63.158 0.00 0.00 0.00 6.13
2087 2102 1.809619 CCTCACATACACACCGGCG 60.810 63.158 0.00 0.00 0.00 6.46
2088 2103 1.080093 CTCACATACACACCGGCGT 60.080 57.895 6.01 0.00 0.00 5.68
2089 2104 1.076533 CTCACATACACACCGGCGTC 61.077 60.000 6.01 0.00 0.00 5.19
2092 2107 2.998480 ATACACACCGGCGTCCCA 60.998 61.111 6.01 0.00 0.00 4.37
2093 2108 3.305177 ATACACACCGGCGTCCCAC 62.305 63.158 6.01 0.00 0.00 4.61
2095 2110 4.920112 CACACCGGCGTCCCACAA 62.920 66.667 6.01 0.00 0.00 3.33
2096 2111 4.178169 ACACCGGCGTCCCACAAA 62.178 61.111 6.01 0.00 0.00 2.83
2097 2112 2.671619 CACCGGCGTCCCACAAAT 60.672 61.111 6.01 0.00 0.00 2.32
2103 2119 1.211709 GCGTCCCACAAATTTCCCG 59.788 57.895 0.00 0.00 0.00 5.14
2105 2121 0.519961 CGTCCCACAAATTTCCCGTC 59.480 55.000 0.00 0.00 0.00 4.79
2128 2144 1.303236 TCCACCAGGTTGATTGGCG 60.303 57.895 0.00 0.00 39.39 5.69
2132 2148 0.038166 ACCAGGTTGATTGGCGTGAT 59.962 50.000 0.00 0.00 39.39 3.06
2133 2149 0.452987 CCAGGTTGATTGGCGTGATG 59.547 55.000 0.00 0.00 0.00 3.07
2136 2152 2.095853 CAGGTTGATTGGCGTGATGTAC 59.904 50.000 0.00 0.00 0.00 2.90
2151 2167 3.258372 TGATGTACGGATGGAAGATAGCC 59.742 47.826 0.00 0.00 0.00 3.93
2155 2171 1.185618 CGGATGGAAGATAGCCCCGA 61.186 60.000 0.00 0.00 37.87 5.14
2157 2173 0.038159 GATGGAAGATAGCCCCGACG 60.038 60.000 0.00 0.00 0.00 5.12
2168 2184 1.451387 CCCCGACGGCTGCTTAAAT 60.451 57.895 8.86 0.00 0.00 1.40
2179 2195 5.126061 ACGGCTGCTTAAATCATCAAATCTT 59.874 36.000 0.00 0.00 0.00 2.40
2197 2213 8.271458 TCAAATCTTATAGCCACCAGATTTACA 58.729 33.333 9.87 1.10 41.81 2.41
2207 2223 2.244510 ACCAGATTTACATGGATGGGCA 59.755 45.455 0.00 0.00 39.02 5.36
2208 2224 3.298619 CCAGATTTACATGGATGGGCAA 58.701 45.455 0.00 0.00 39.02 4.52
2211 2227 2.228545 TTTACATGGATGGGCAAGCA 57.771 45.000 0.00 0.00 0.00 3.91
2217 2233 0.040058 TGGATGGGCAAGCAGATTGT 59.960 50.000 0.00 0.00 41.29 2.71
2222 2238 1.340889 TGGGCAAGCAGATTGTTTGAC 59.659 47.619 9.39 6.41 44.55 3.18
2231 2247 3.062234 GCAGATTGTTTGACCTACGTAGC 59.938 47.826 17.41 5.19 0.00 3.58
2235 2251 4.325028 TTGTTTGACCTACGTAGCAGAA 57.675 40.909 17.41 5.77 0.00 3.02
2265 2288 2.811799 GCGGCCGGCCAAATAATT 59.188 55.556 42.78 0.00 35.37 1.40
2266 2289 1.591327 GCGGCCGGCCAAATAATTG 60.591 57.895 42.78 25.58 35.37 2.32
2270 2293 1.067060 GGCCGGCCAAATAATTGACTC 59.933 52.381 40.73 7.27 38.94 3.36
2274 2297 3.303990 CCGGCCAAATAATTGACTCATCG 60.304 47.826 2.24 0.00 38.94 3.84
2304 2327 1.485294 TACGTGGATGCAGGGGTTGT 61.485 55.000 11.72 0.00 0.00 3.32
2315 2338 0.324645 AGGGGTTGTTGATGGGATGC 60.325 55.000 0.00 0.00 0.00 3.91
2316 2339 1.329913 GGGGTTGTTGATGGGATGCC 61.330 60.000 0.00 0.00 0.00 4.40
2317 2340 0.614415 GGGTTGTTGATGGGATGCCA 60.614 55.000 9.00 9.00 0.00 4.92
2318 2341 0.819582 GGTTGTTGATGGGATGCCAG 59.180 55.000 12.95 0.00 0.00 4.85
2319 2342 1.616725 GGTTGTTGATGGGATGCCAGA 60.617 52.381 12.95 0.00 0.00 3.86
2320 2343 1.747355 GTTGTTGATGGGATGCCAGAG 59.253 52.381 12.95 0.00 0.00 3.35
2321 2344 1.288188 TGTTGATGGGATGCCAGAGA 58.712 50.000 12.95 0.00 0.00 3.10
2322 2345 1.634973 TGTTGATGGGATGCCAGAGAA 59.365 47.619 12.95 1.03 0.00 2.87
2323 2346 2.295885 GTTGATGGGATGCCAGAGAAG 58.704 52.381 12.95 0.00 0.00 2.85
2324 2347 1.883678 TGATGGGATGCCAGAGAAGA 58.116 50.000 12.95 0.00 0.00 2.87
2325 2348 2.415624 TGATGGGATGCCAGAGAAGAT 58.584 47.619 12.95 0.00 0.00 2.40
2326 2349 2.781757 TGATGGGATGCCAGAGAAGATT 59.218 45.455 12.95 0.00 0.00 2.40
2327 2350 2.723322 TGGGATGCCAGAGAAGATTG 57.277 50.000 0.00 0.00 0.00 2.67
2328 2351 1.316651 GGGATGCCAGAGAAGATTGC 58.683 55.000 0.00 0.00 0.00 3.56
2329 2352 0.942962 GGATGCCAGAGAAGATTGCG 59.057 55.000 0.00 0.00 0.00 4.85
2330 2353 0.942962 GATGCCAGAGAAGATTGCGG 59.057 55.000 0.00 0.00 0.00 5.69
2331 2354 1.099879 ATGCCAGAGAAGATTGCGGC 61.100 55.000 0.00 0.00 40.02 6.53
2332 2355 1.746615 GCCAGAGAAGATTGCGGCA 60.747 57.895 0.00 0.00 39.38 5.69
2333 2356 1.712977 GCCAGAGAAGATTGCGGCAG 61.713 60.000 1.67 0.00 39.38 4.85
2334 2357 1.094073 CCAGAGAAGATTGCGGCAGG 61.094 60.000 1.67 0.00 0.00 4.85
2335 2358 1.451028 AGAGAAGATTGCGGCAGGC 60.451 57.895 1.67 0.00 43.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
556 561 2.573462 AGTGCTCAATTAGGAGAGGCAA 59.427 45.455 0.00 0.00 37.05 4.52
740 745 2.281762 GCAGCATTAGTAAGACGGTTCG 59.718 50.000 0.00 0.00 0.00 3.95
908 916 2.566724 GAGGCCCAAACAAAATCATGGA 59.433 45.455 0.00 0.00 34.82 3.41
949 957 2.096657 GGAGAAGCCAAGCGAAAATCTC 59.903 50.000 0.00 0.00 36.34 2.75
1139 1148 0.947244 GTGTTGGTGAAGAGCAGTGG 59.053 55.000 0.00 0.00 0.00 4.00
1335 1348 3.036429 GCCGAAGCCCTGTCCTCAT 62.036 63.158 0.00 0.00 0.00 2.90
1643 1656 9.743057 CGAATATCTTTTGTCTCATCTACTCTT 57.257 33.333 0.00 0.00 0.00 2.85
1644 1657 9.126151 TCGAATATCTTTTGTCTCATCTACTCT 57.874 33.333 0.00 0.00 0.00 3.24
1645 1658 9.393249 CTCGAATATCTTTTGTCTCATCTACTC 57.607 37.037 0.00 0.00 0.00 2.59
1646 1659 7.865385 GCTCGAATATCTTTTGTCTCATCTACT 59.135 37.037 0.00 0.00 0.00 2.57
1647 1660 7.865385 AGCTCGAATATCTTTTGTCTCATCTAC 59.135 37.037 0.00 0.00 0.00 2.59
1648 1661 7.946207 AGCTCGAATATCTTTTGTCTCATCTA 58.054 34.615 0.00 0.00 0.00 1.98
1649 1662 6.815089 AGCTCGAATATCTTTTGTCTCATCT 58.185 36.000 0.00 0.00 0.00 2.90
1650 1663 7.223582 TCAAGCTCGAATATCTTTTGTCTCATC 59.776 37.037 0.00 0.00 0.00 2.92
1651 1664 7.044181 TCAAGCTCGAATATCTTTTGTCTCAT 58.956 34.615 0.00 0.00 0.00 2.90
1652 1665 6.398095 TCAAGCTCGAATATCTTTTGTCTCA 58.602 36.000 0.00 0.00 0.00 3.27
1653 1666 6.893958 TCAAGCTCGAATATCTTTTGTCTC 57.106 37.500 0.00 0.00 0.00 3.36
1654 1667 7.672983 TTTCAAGCTCGAATATCTTTTGTCT 57.327 32.000 0.00 0.00 0.00 3.41
1655 1668 8.902040 ATTTTCAAGCTCGAATATCTTTTGTC 57.098 30.769 0.00 0.00 0.00 3.18
1656 1669 9.696917 AAATTTTCAAGCTCGAATATCTTTTGT 57.303 25.926 0.00 0.00 0.00 2.83
1658 1671 9.065871 CGAAATTTTCAAGCTCGAATATCTTTT 57.934 29.630 9.66 0.00 0.00 2.27
1659 1672 7.698130 CCGAAATTTTCAAGCTCGAATATCTTT 59.302 33.333 9.66 0.00 0.00 2.52
1660 1673 7.189512 CCGAAATTTTCAAGCTCGAATATCTT 58.810 34.615 9.66 0.00 0.00 2.40
1661 1674 6.238484 CCCGAAATTTTCAAGCTCGAATATCT 60.238 38.462 9.66 0.00 0.00 1.98
1662 1675 5.909610 CCCGAAATTTTCAAGCTCGAATATC 59.090 40.000 9.66 0.00 0.00 1.63
1663 1676 5.588648 TCCCGAAATTTTCAAGCTCGAATAT 59.411 36.000 9.66 0.00 0.00 1.28
1664 1677 4.938832 TCCCGAAATTTTCAAGCTCGAATA 59.061 37.500 9.66 0.00 0.00 1.75
1665 1678 3.756434 TCCCGAAATTTTCAAGCTCGAAT 59.244 39.130 9.66 0.00 0.00 3.34
1666 1679 3.142951 TCCCGAAATTTTCAAGCTCGAA 58.857 40.909 9.66 0.00 0.00 3.71
1667 1680 2.773487 TCCCGAAATTTTCAAGCTCGA 58.227 42.857 9.66 0.00 0.00 4.04
1668 1681 3.764885 ATCCCGAAATTTTCAAGCTCG 57.235 42.857 9.66 0.00 0.00 5.03
1669 1682 5.949735 TGTTATCCCGAAATTTTCAAGCTC 58.050 37.500 9.66 0.00 0.00 4.09
1670 1683 5.975693 TGTTATCCCGAAATTTTCAAGCT 57.024 34.783 9.66 0.00 0.00 3.74
1671 1684 5.576774 CCTTGTTATCCCGAAATTTTCAAGC 59.423 40.000 9.66 0.00 0.00 4.01
1672 1685 5.576774 GCCTTGTTATCCCGAAATTTTCAAG 59.423 40.000 9.66 3.67 0.00 3.02
1673 1686 5.474825 GCCTTGTTATCCCGAAATTTTCAA 58.525 37.500 9.66 0.00 0.00 2.69
1674 1687 4.380023 CGCCTTGTTATCCCGAAATTTTCA 60.380 41.667 9.66 0.00 0.00 2.69
1675 1688 4.102649 CGCCTTGTTATCCCGAAATTTTC 58.897 43.478 0.00 0.00 0.00 2.29
1676 1689 3.674955 GCGCCTTGTTATCCCGAAATTTT 60.675 43.478 0.00 0.00 0.00 1.82
1677 1690 2.159296 GCGCCTTGTTATCCCGAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
1678 1691 1.404035 GCGCCTTGTTATCCCGAAATT 59.596 47.619 0.00 0.00 0.00 1.82
1679 1692 1.021968 GCGCCTTGTTATCCCGAAAT 58.978 50.000 0.00 0.00 0.00 2.17
1680 1693 1.363145 CGCGCCTTGTTATCCCGAAA 61.363 55.000 0.00 0.00 0.00 3.46
1681 1694 1.812093 CGCGCCTTGTTATCCCGAA 60.812 57.895 0.00 0.00 0.00 4.30
1682 1695 2.202824 CGCGCCTTGTTATCCCGA 60.203 61.111 0.00 0.00 0.00 5.14
1683 1696 2.989055 ATCCGCGCCTTGTTATCCCG 62.989 60.000 0.00 0.00 0.00 5.14
1684 1697 0.818040 AATCCGCGCCTTGTTATCCC 60.818 55.000 0.00 0.00 0.00 3.85
1685 1698 0.586802 GAATCCGCGCCTTGTTATCC 59.413 55.000 0.00 0.00 0.00 2.59
1686 1699 0.586802 GGAATCCGCGCCTTGTTATC 59.413 55.000 0.00 0.00 0.00 1.75
1687 1700 0.180406 AGGAATCCGCGCCTTGTTAT 59.820 50.000 0.00 0.00 0.00 1.89
1688 1701 0.035820 AAGGAATCCGCGCCTTGTTA 60.036 50.000 13.94 0.00 42.67 2.41
1689 1702 1.303317 AAGGAATCCGCGCCTTGTT 60.303 52.632 13.94 0.00 42.67 2.83
1690 1703 2.351276 AAGGAATCCGCGCCTTGT 59.649 55.556 13.94 0.00 42.67 3.16
1692 1705 1.303317 AACAAGGAATCCGCGCCTT 60.303 52.632 9.60 9.60 45.07 4.35
1693 1706 1.745489 GAACAAGGAATCCGCGCCT 60.745 57.895 0.00 0.00 35.61 5.52
1694 1707 2.791927 GAACAAGGAATCCGCGCC 59.208 61.111 0.00 0.00 0.00 6.53
1695 1708 2.399611 CGAACAAGGAATCCGCGC 59.600 61.111 0.00 0.00 0.00 6.86
1696 1709 3.089784 CCGAACAAGGAATCCGCG 58.910 61.111 0.00 0.00 0.00 6.46
1697 1710 1.982073 CTGCCGAACAAGGAATCCGC 61.982 60.000 0.00 0.00 0.00 5.54
1698 1711 0.391130 TCTGCCGAACAAGGAATCCG 60.391 55.000 0.00 0.00 0.00 4.18
1699 1712 1.468914 GTTCTGCCGAACAAGGAATCC 59.531 52.381 15.25 0.00 46.88 3.01
1700 1713 2.902065 GTTCTGCCGAACAAGGAATC 57.098 50.000 15.25 0.00 46.88 2.52
1709 1722 2.937799 ACGTTAAGTTTGTTCTGCCGAA 59.062 40.909 0.00 0.00 0.00 4.30
1710 1723 2.285756 CACGTTAAGTTTGTTCTGCCGA 59.714 45.455 0.00 0.00 0.00 5.54
1711 1724 2.031191 ACACGTTAAGTTTGTTCTGCCG 59.969 45.455 0.00 0.00 0.00 5.69
1712 1725 3.685836 ACACGTTAAGTTTGTTCTGCC 57.314 42.857 0.00 0.00 0.00 4.85
1713 1726 5.146482 TGTACACGTTAAGTTTGTTCTGC 57.854 39.130 0.00 0.00 0.00 4.26
1714 1727 8.437443 TTTTTGTACACGTTAAGTTTGTTCTG 57.563 30.769 0.00 0.00 0.00 3.02
1743 1756 9.950496 ATGACTCTCTTGTGTCTTGTATAAATT 57.050 29.630 0.00 0.00 37.52 1.82
1744 1757 9.376075 CATGACTCTCTTGTGTCTTGTATAAAT 57.624 33.333 0.00 0.00 37.22 1.40
1745 1758 8.367911 ACATGACTCTCTTGTGTCTTGTATAAA 58.632 33.333 0.00 0.00 45.03 1.40
1746 1759 7.896811 ACATGACTCTCTTGTGTCTTGTATAA 58.103 34.615 0.00 0.00 45.03 0.98
1747 1760 7.363007 GGACATGACTCTCTTGTGTCTTGTATA 60.363 40.741 0.00 0.00 45.90 1.47
1748 1761 6.352016 ACATGACTCTCTTGTGTCTTGTAT 57.648 37.500 0.00 0.00 45.03 2.29
1749 1762 5.279006 GGACATGACTCTCTTGTGTCTTGTA 60.279 44.000 0.00 0.00 45.90 2.41
1750 1763 4.679373 ACATGACTCTCTTGTGTCTTGT 57.321 40.909 0.00 11.33 43.61 3.16
1751 1764 3.993081 GGACATGACTCTCTTGTGTCTTG 59.007 47.826 0.00 0.00 42.43 3.02
1752 1765 3.007398 GGGACATGACTCTCTTGTGTCTT 59.993 47.826 0.00 0.00 39.22 3.01
1753 1766 2.564947 GGGACATGACTCTCTTGTGTCT 59.435 50.000 0.00 0.00 39.22 3.41
1754 1767 2.354203 GGGGACATGACTCTCTTGTGTC 60.354 54.545 0.00 0.00 35.29 3.67
1755 1768 1.625818 GGGGACATGACTCTCTTGTGT 59.374 52.381 0.00 0.00 35.29 3.72
1756 1769 1.905215 AGGGGACATGACTCTCTTGTG 59.095 52.381 0.00 0.00 35.29 3.33
1757 1770 2.334006 AGGGGACATGACTCTCTTGT 57.666 50.000 0.00 0.00 37.45 3.16
1758 1771 3.710209 AAAGGGGACATGACTCTCTTG 57.290 47.619 0.00 0.00 0.00 3.02
1759 1772 4.846940 AGTAAAAGGGGACATGACTCTCTT 59.153 41.667 0.00 0.00 0.00 2.85
1760 1773 4.430441 AGTAAAAGGGGACATGACTCTCT 58.570 43.478 0.00 0.00 0.00 3.10
1761 1774 4.828072 AGTAAAAGGGGACATGACTCTC 57.172 45.455 0.00 0.00 0.00 3.20
1762 1775 8.432805 CAATATAGTAAAAGGGGACATGACTCT 58.567 37.037 0.00 0.00 0.00 3.24
1763 1776 7.173390 GCAATATAGTAAAAGGGGACATGACTC 59.827 40.741 0.00 0.00 0.00 3.36
1764 1777 6.998673 GCAATATAGTAAAAGGGGACATGACT 59.001 38.462 0.00 0.00 0.00 3.41
1765 1778 6.998673 AGCAATATAGTAAAAGGGGACATGAC 59.001 38.462 0.00 0.00 0.00 3.06
1766 1779 7.149202 AGCAATATAGTAAAAGGGGACATGA 57.851 36.000 0.00 0.00 0.00 3.07
1769 1782 9.610104 TCTATAGCAATATAGTAAAAGGGGACA 57.390 33.333 0.00 0.00 33.08 4.02
1865 1878 7.872138 AGGGTTGGATGTTTCTGATTATTCTA 58.128 34.615 0.00 0.00 0.00 2.10
1866 1879 6.735556 AGGGTTGGATGTTTCTGATTATTCT 58.264 36.000 0.00 0.00 0.00 2.40
1909 1924 4.814771 GGAATTTCGATCTAACGGGTCATT 59.185 41.667 0.00 0.00 0.00 2.57
1911 1926 3.431207 GGGAATTTCGATCTAACGGGTCA 60.431 47.826 0.00 0.00 0.00 4.02
1961 1976 3.260740 CGTGGCGTTAGTGGGTAATTTA 58.739 45.455 0.00 0.00 0.00 1.40
1996 2011 1.809619 CTGGCGTGTACCGTGGATG 60.810 63.158 0.00 0.00 39.32 3.51
1998 2013 4.367023 GCTGGCGTGTACCGTGGA 62.367 66.667 0.00 0.00 39.32 4.02
2010 2025 0.111253 ATTATACAGGGGCTGCTGGC 59.889 55.000 8.77 8.77 34.37 4.85
2014 2029 1.003696 GGAGGATTATACAGGGGCTGC 59.996 57.143 0.00 0.00 34.37 5.25
2021 2036 5.896073 AGGTTTGGAGGAGGATTATACAG 57.104 43.478 0.00 0.00 0.00 2.74
2022 2037 7.758820 TTAAGGTTTGGAGGAGGATTATACA 57.241 36.000 0.00 0.00 0.00 2.29
2025 2040 9.642343 GTATTTTAAGGTTTGGAGGAGGATTAT 57.358 33.333 0.00 0.00 0.00 1.28
2027 2042 7.475299 TGTATTTTAAGGTTTGGAGGAGGATT 58.525 34.615 0.00 0.00 0.00 3.01
2040 2055 8.258850 TCGAGGAGGATTATGTATTTTAAGGT 57.741 34.615 0.00 0.00 0.00 3.50
2043 2058 7.660208 GGCTTCGAGGAGGATTATGTATTTTAA 59.340 37.037 0.00 0.00 0.00 1.52
2049 2064 2.897969 GGGCTTCGAGGAGGATTATGTA 59.102 50.000 0.00 0.00 0.00 2.29
2052 2067 2.252714 GAGGGCTTCGAGGAGGATTAT 58.747 52.381 0.00 0.00 0.00 1.28
2064 2079 1.739067 GGTGTGTATGTGAGGGCTTC 58.261 55.000 0.00 0.00 0.00 3.86
2073 2088 2.263540 GGACGCCGGTGTGTATGT 59.736 61.111 28.44 0.00 34.74 2.29
2076 2091 3.993584 GTGGGACGCCGGTGTGTA 61.994 66.667 28.44 8.52 34.74 2.90
2078 2093 4.920112 TTGTGGGACGCCGGTGTG 62.920 66.667 28.44 7.22 38.60 3.82
2081 2096 1.520600 GAAATTTGTGGGACGCCGGT 61.521 55.000 1.90 0.00 38.60 5.28
2082 2097 1.211709 GAAATTTGTGGGACGCCGG 59.788 57.895 0.00 0.00 38.60 6.13
2083 2098 1.211709 GGAAATTTGTGGGACGCCG 59.788 57.895 0.00 0.00 38.60 6.46
2084 2099 1.589630 GGGAAATTTGTGGGACGCC 59.410 57.895 0.00 0.00 38.60 5.68
2086 2101 0.519961 GACGGGAAATTTGTGGGACG 59.480 55.000 0.00 0.00 0.00 4.79
2087 2102 0.519961 CGACGGGAAATTTGTGGGAC 59.480 55.000 0.00 0.00 0.00 4.46
2088 2103 0.397187 TCGACGGGAAATTTGTGGGA 59.603 50.000 0.00 0.00 0.00 4.37
2089 2104 0.802494 CTCGACGGGAAATTTGTGGG 59.198 55.000 0.00 0.00 0.00 4.61
2092 2107 1.439679 GAGCTCGACGGGAAATTTGT 58.560 50.000 0.00 0.00 0.00 2.83
2093 2108 0.727398 GGAGCTCGACGGGAAATTTG 59.273 55.000 7.83 0.00 0.00 2.32
2094 2109 0.323629 TGGAGCTCGACGGGAAATTT 59.676 50.000 7.83 0.00 0.00 1.82
2095 2110 0.391263 GTGGAGCTCGACGGGAAATT 60.391 55.000 13.38 0.00 0.00 1.82
2096 2111 1.218316 GTGGAGCTCGACGGGAAAT 59.782 57.895 13.38 0.00 0.00 2.17
2097 2112 2.654877 GTGGAGCTCGACGGGAAA 59.345 61.111 13.38 0.00 0.00 3.13
2103 2119 1.374758 CAACCTGGTGGAGCTCGAC 60.375 63.158 19.63 19.63 37.04 4.20
2105 2121 0.036010 AATCAACCTGGTGGAGCTCG 60.036 55.000 10.22 0.00 37.04 5.03
2128 2144 4.238514 GCTATCTTCCATCCGTACATCAC 58.761 47.826 0.00 0.00 0.00 3.06
2132 2148 1.968493 GGGCTATCTTCCATCCGTACA 59.032 52.381 0.00 0.00 0.00 2.90
2133 2149 1.275573 GGGGCTATCTTCCATCCGTAC 59.724 57.143 0.00 0.00 0.00 3.67
2136 2152 1.185618 TCGGGGCTATCTTCCATCCG 61.186 60.000 0.00 0.00 37.61 4.18
2137 2153 0.321996 GTCGGGGCTATCTTCCATCC 59.678 60.000 0.00 0.00 0.00 3.51
2140 2156 2.131709 CCGTCGGGGCTATCTTCCA 61.132 63.158 2.34 0.00 0.00 3.53
2141 2157 2.735237 CCGTCGGGGCTATCTTCC 59.265 66.667 2.34 0.00 0.00 3.46
2151 2167 0.742990 TGATTTAAGCAGCCGTCGGG 60.743 55.000 14.38 0.00 0.00 5.14
2155 2171 4.641989 AGATTTGATGATTTAAGCAGCCGT 59.358 37.500 0.00 0.00 0.00 5.68
2157 2173 9.837525 CTATAAGATTTGATGATTTAAGCAGCC 57.162 33.333 0.00 0.00 0.00 4.85
2161 2177 9.617975 GTGGCTATAAGATTTGATGATTTAAGC 57.382 33.333 0.00 0.00 0.00 3.09
2163 2179 9.639563 TGGTGGCTATAAGATTTGATGATTTAA 57.360 29.630 0.00 0.00 0.00 1.52
2164 2180 9.288576 CTGGTGGCTATAAGATTTGATGATTTA 57.711 33.333 0.00 0.00 0.00 1.40
2168 2184 6.499106 TCTGGTGGCTATAAGATTTGATGA 57.501 37.500 0.00 0.00 0.00 2.92
2179 2195 6.475504 CATCCATGTAAATCTGGTGGCTATA 58.524 40.000 0.00 0.00 34.03 1.31
2197 2213 1.342674 ACAATCTGCTTGCCCATCCAT 60.343 47.619 0.00 0.00 38.50 3.41
2207 2223 3.740115 ACGTAGGTCAAACAATCTGCTT 58.260 40.909 0.00 0.00 0.00 3.91
2208 2224 3.402628 ACGTAGGTCAAACAATCTGCT 57.597 42.857 0.00 0.00 0.00 4.24
2211 2227 4.219944 TCTGCTACGTAGGTCAAACAATCT 59.780 41.667 23.47 0.00 0.00 2.40
2217 2233 5.204409 TCTTTTCTGCTACGTAGGTCAAA 57.796 39.130 23.47 10.35 0.00 2.69
2222 2238 3.932710 TGCAATCTTTTCTGCTACGTAGG 59.067 43.478 23.47 8.51 39.38 3.18
2231 2247 1.532505 CCGCCGATGCAATCTTTTCTG 60.533 52.381 0.00 0.00 42.58 3.02
2235 2251 2.774799 GGCCGCCGATGCAATCTTT 61.775 57.895 0.00 0.00 42.58 2.52
2266 2289 1.927895 AAATCCAGCGACGATGAGTC 58.072 50.000 15.87 0.00 46.16 3.36
2270 2293 1.255342 CACGTAAATCCAGCGACGATG 59.745 52.381 6.03 6.03 38.63 3.84
2274 2297 1.593006 CATCCACGTAAATCCAGCGAC 59.407 52.381 0.00 0.00 0.00 5.19
2304 2327 2.199208 TCTTCTCTGGCATCCCATCAA 58.801 47.619 0.00 0.00 41.21 2.57
2315 2338 1.094073 CCTGCCGCAATCTTCTCTGG 61.094 60.000 0.00 0.00 0.00 3.86
2316 2339 1.712977 GCCTGCCGCAATCTTCTCTG 61.713 60.000 0.00 0.00 37.47 3.35
2317 2340 1.451028 GCCTGCCGCAATCTTCTCT 60.451 57.895 0.00 0.00 37.47 3.10
2318 2341 2.817423 CGCCTGCCGCAATCTTCTC 61.817 63.158 0.00 0.00 37.30 2.87
2319 2342 2.821366 CGCCTGCCGCAATCTTCT 60.821 61.111 0.00 0.00 37.30 2.85
2320 2343 3.880846 CCGCCTGCCGCAATCTTC 61.881 66.667 0.00 0.00 37.30 2.87
2321 2344 4.408821 TCCGCCTGCCGCAATCTT 62.409 61.111 0.00 0.00 37.30 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.