Multiple sequence alignment - TraesCS6D01G106200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G106200 chr6D 100.000 2624 0 0 1 2624 69300070 69297447 0.000000e+00 4846
1 TraesCS6D01G106200 chr6D 91.262 1030 65 11 841 1855 69271071 69270052 0.000000e+00 1380
2 TraesCS6D01G106200 chr6D 80.779 411 62 10 2038 2445 69269984 69269588 3.280000e-79 305
3 TraesCS6D01G106200 chr6A 94.275 1275 53 8 517 1782 87497702 87496439 0.000000e+00 1932
4 TraesCS6D01G106200 chr6A 88.889 1026 71 16 841 1849 87312432 87311433 0.000000e+00 1223
5 TraesCS6D01G106200 chr6A 89.691 291 28 2 233 522 87510687 87510398 1.150000e-98 370
6 TraesCS6D01G106200 chr6A 89.744 117 12 0 114 230 87513636 87513520 1.630000e-32 150
7 TraesCS6D01G106200 chr6B 93.876 1290 60 9 576 1855 144372686 144371406 0.000000e+00 1927
8 TraesCS6D01G106200 chr6B 91.018 167 11 2 420 582 144387148 144386982 3.400000e-54 222
9 TraesCS6D01G106200 chr6B 78.248 331 63 8 2025 2352 144371352 144371028 1.230000e-48 204
10 TraesCS6D01G106200 chr6B 89.600 125 13 0 233 357 144413341 144413217 2.700000e-35 159
11 TraesCS6D01G106200 chr6B 90.826 109 8 2 2338 2445 144371007 144370900 7.570000e-31 145
12 TraesCS6D01G106200 chr3B 83.769 536 82 3 1080 1611 51062687 51062153 1.080000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G106200 chr6D 69297447 69300070 2623 True 4846.000000 4846 100.0000 1 2624 1 chr6D.!!$R1 2623
1 TraesCS6D01G106200 chr6D 69269588 69271071 1483 True 842.500000 1380 86.0205 841 2445 2 chr6D.!!$R2 1604
2 TraesCS6D01G106200 chr6A 87496439 87497702 1263 True 1932.000000 1932 94.2750 517 1782 1 chr6A.!!$R2 1265
3 TraesCS6D01G106200 chr6A 87311433 87312432 999 True 1223.000000 1223 88.8890 841 1849 1 chr6A.!!$R1 1008
4 TraesCS6D01G106200 chr6A 87510398 87513636 3238 True 260.000000 370 89.7175 114 522 2 chr6A.!!$R3 408
5 TraesCS6D01G106200 chr6B 144370900 144372686 1786 True 758.666667 1927 87.6500 576 2445 3 chr6B.!!$R3 1869
6 TraesCS6D01G106200 chr3B 51062153 51062687 534 True 503.000000 503 83.7690 1080 1611 1 chr3B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.036164 ACTATGCAAGGTTGGCGTCA 59.964 50.0 0.0 0.0 0.0 4.35 F
71 72 0.036164 TATGCAAGGTTGGCGTCACT 59.964 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1595 2.080693 CACGCTAATACCCACTTGCAA 58.919 47.619 0.0 0.0 0.00 4.08 R
1972 4438 2.307768 CGAAGGGACTACCATCTAGCA 58.692 52.381 0.0 0.0 43.89 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.632377 CGCACCAAGGACATCATAACT 58.368 47.619 0.00 0.00 0.00 2.24
21 22 3.009723 CGCACCAAGGACATCATAACTT 58.990 45.455 0.00 0.00 0.00 2.66
22 23 3.063997 CGCACCAAGGACATCATAACTTC 59.936 47.826 0.00 0.00 0.00 3.01
23 24 4.009675 GCACCAAGGACATCATAACTTCA 58.990 43.478 0.00 0.00 0.00 3.02
24 25 4.095483 GCACCAAGGACATCATAACTTCAG 59.905 45.833 0.00 0.00 0.00 3.02
25 26 5.248640 CACCAAGGACATCATAACTTCAGT 58.751 41.667 0.00 0.00 0.00 3.41
26 27 5.707298 CACCAAGGACATCATAACTTCAGTT 59.293 40.000 0.00 0.00 41.73 3.16
27 28 5.940470 ACCAAGGACATCATAACTTCAGTTC 59.060 40.000 0.00 0.00 39.31 3.01
28 29 6.176183 CCAAGGACATCATAACTTCAGTTCT 58.824 40.000 0.00 0.00 39.31 3.01
29 30 6.093219 CCAAGGACATCATAACTTCAGTTCTG 59.907 42.308 0.00 0.00 39.31 3.02
30 31 6.611613 AGGACATCATAACTTCAGTTCTGA 57.388 37.500 9.48 9.48 42.57 3.27
31 32 7.192852 AGGACATCATAACTTCAGTTCTGAT 57.807 36.000 12.52 12.52 46.18 2.90
45 46 8.627208 TTCAGTTCTGATGAAGAGCTAAAAAT 57.373 30.769 3.28 0.00 44.00 1.82
46 47 8.037382 TCAGTTCTGATGAAGAGCTAAAAATG 57.963 34.615 0.00 0.00 44.00 2.32
47 48 7.120285 TCAGTTCTGATGAAGAGCTAAAAATGG 59.880 37.037 0.00 0.00 44.00 3.16
48 49 6.376581 AGTTCTGATGAAGAGCTAAAAATGGG 59.623 38.462 0.00 0.00 44.00 4.00
49 50 6.065976 TCTGATGAAGAGCTAAAAATGGGA 57.934 37.500 0.00 0.00 0.00 4.37
50 51 6.484288 TCTGATGAAGAGCTAAAAATGGGAA 58.516 36.000 0.00 0.00 0.00 3.97
51 52 6.375455 TCTGATGAAGAGCTAAAAATGGGAAC 59.625 38.462 0.00 0.00 0.00 3.62
52 53 6.248433 TGATGAAGAGCTAAAAATGGGAACT 58.752 36.000 0.00 0.00 0.00 3.01
53 54 7.402054 TGATGAAGAGCTAAAAATGGGAACTA 58.598 34.615 0.00 0.00 0.00 2.24
54 55 8.055181 TGATGAAGAGCTAAAAATGGGAACTAT 58.945 33.333 0.00 0.00 0.00 2.12
55 56 7.630242 TGAAGAGCTAAAAATGGGAACTATG 57.370 36.000 0.00 0.00 0.00 2.23
56 57 6.095440 TGAAGAGCTAAAAATGGGAACTATGC 59.905 38.462 0.00 0.00 0.00 3.14
57 58 5.509498 AGAGCTAAAAATGGGAACTATGCA 58.491 37.500 0.00 0.00 0.00 3.96
58 59 5.951747 AGAGCTAAAAATGGGAACTATGCAA 59.048 36.000 0.00 0.00 0.00 4.08
59 60 6.096001 AGAGCTAAAAATGGGAACTATGCAAG 59.904 38.462 0.00 0.00 0.00 4.01
60 61 5.127682 AGCTAAAAATGGGAACTATGCAAGG 59.872 40.000 0.00 0.00 0.00 3.61
61 62 5.105351 GCTAAAAATGGGAACTATGCAAGGT 60.105 40.000 0.00 0.00 0.00 3.50
62 63 5.823861 AAAAATGGGAACTATGCAAGGTT 57.176 34.783 7.27 7.27 0.00 3.50
63 64 4.806640 AAATGGGAACTATGCAAGGTTG 57.193 40.909 11.49 0.00 0.00 3.77
64 65 2.214376 TGGGAACTATGCAAGGTTGG 57.786 50.000 11.49 0.00 0.00 3.77
65 66 0.817654 GGGAACTATGCAAGGTTGGC 59.182 55.000 11.49 0.41 0.00 4.52
66 67 0.451783 GGAACTATGCAAGGTTGGCG 59.548 55.000 11.49 0.00 0.00 5.69
67 68 1.165270 GAACTATGCAAGGTTGGCGT 58.835 50.000 11.49 0.00 0.00 5.68
68 69 1.130561 GAACTATGCAAGGTTGGCGTC 59.869 52.381 11.49 0.00 0.00 5.19
69 70 0.036164 ACTATGCAAGGTTGGCGTCA 59.964 50.000 0.00 0.00 0.00 4.35
70 71 0.447801 CTATGCAAGGTTGGCGTCAC 59.552 55.000 0.00 0.00 0.00 3.67
71 72 0.036164 TATGCAAGGTTGGCGTCACT 59.964 50.000 0.00 0.00 0.00 3.41
72 73 1.518056 ATGCAAGGTTGGCGTCACTG 61.518 55.000 0.00 0.00 0.00 3.66
73 74 1.891919 GCAAGGTTGGCGTCACTGA 60.892 57.895 0.00 0.00 0.00 3.41
74 75 1.444119 GCAAGGTTGGCGTCACTGAA 61.444 55.000 0.00 0.00 0.00 3.02
75 76 0.588252 CAAGGTTGGCGTCACTGAAG 59.412 55.000 0.00 0.00 0.00 3.02
76 77 0.468226 AAGGTTGGCGTCACTGAAGA 59.532 50.000 0.00 0.00 0.00 2.87
77 78 0.687354 AGGTTGGCGTCACTGAAGAT 59.313 50.000 0.00 0.00 0.00 2.40
78 79 1.079503 GGTTGGCGTCACTGAAGATC 58.920 55.000 0.00 0.00 0.00 2.75
79 80 1.608025 GGTTGGCGTCACTGAAGATCA 60.608 52.381 0.00 0.00 0.00 2.92
80 81 1.461127 GTTGGCGTCACTGAAGATCAC 59.539 52.381 0.00 0.00 0.00 3.06
81 82 0.969149 TGGCGTCACTGAAGATCACT 59.031 50.000 0.00 0.00 0.00 3.41
82 83 1.337167 TGGCGTCACTGAAGATCACTG 60.337 52.381 0.00 0.00 0.00 3.66
83 84 1.067565 GGCGTCACTGAAGATCACTGA 60.068 52.381 0.00 0.00 0.00 3.41
84 85 2.257894 GCGTCACTGAAGATCACTGAG 58.742 52.381 0.00 0.00 0.00 3.35
85 86 2.873609 CGTCACTGAAGATCACTGAGG 58.126 52.381 0.00 0.00 0.00 3.86
86 87 2.230025 CGTCACTGAAGATCACTGAGGT 59.770 50.000 0.00 0.00 0.00 3.85
87 88 3.583806 GTCACTGAAGATCACTGAGGTG 58.416 50.000 0.00 0.00 44.23 4.00
96 97 0.106708 TCACTGAGGTGACCACTTGC 59.893 55.000 3.63 0.00 46.19 4.01
97 98 0.179048 CACTGAGGTGACCACTTGCA 60.179 55.000 3.63 0.00 45.61 4.08
98 99 0.546122 ACTGAGGTGACCACTTGCAA 59.454 50.000 3.63 0.00 0.00 4.08
99 100 0.947244 CTGAGGTGACCACTTGCAAC 59.053 55.000 3.63 0.00 0.00 4.17
100 101 0.546122 TGAGGTGACCACTTGCAACT 59.454 50.000 3.63 0.00 34.10 3.16
101 102 1.230324 GAGGTGACCACTTGCAACTC 58.770 55.000 3.63 0.00 41.13 3.01
102 103 0.546122 AGGTGACCACTTGCAACTCA 59.454 50.000 3.63 0.00 0.00 3.41
103 104 1.143684 AGGTGACCACTTGCAACTCAT 59.856 47.619 3.63 0.00 0.00 2.90
104 105 1.537202 GGTGACCACTTGCAACTCATC 59.463 52.381 0.00 0.00 0.00 2.92
105 106 2.221169 GTGACCACTTGCAACTCATCA 58.779 47.619 0.00 0.00 0.00 3.07
106 107 2.031682 GTGACCACTTGCAACTCATCAC 60.032 50.000 11.34 11.34 0.00 3.06
107 108 2.158769 TGACCACTTGCAACTCATCACT 60.159 45.455 0.00 0.00 0.00 3.41
108 109 2.224606 ACCACTTGCAACTCATCACTG 58.775 47.619 0.00 0.00 0.00 3.66
109 110 2.158769 ACCACTTGCAACTCATCACTGA 60.159 45.455 0.00 0.00 0.00 3.41
122 123 2.479566 TCACTGAGCTTTGTCATCCC 57.520 50.000 0.00 0.00 0.00 3.85
128 129 1.223487 GCTTTGTCATCCCCGGCTA 59.777 57.895 0.00 0.00 0.00 3.93
132 133 2.109181 GTCATCCCCGGCTACAGC 59.891 66.667 0.00 0.00 41.14 4.40
148 149 4.093556 GCTACAGCCATTACAAGAGACAAC 59.906 45.833 0.00 0.00 34.31 3.32
150 151 3.815401 ACAGCCATTACAAGAGACAACAC 59.185 43.478 0.00 0.00 0.00 3.32
151 152 4.067896 CAGCCATTACAAGAGACAACACT 58.932 43.478 0.00 0.00 0.00 3.55
152 153 4.516698 CAGCCATTACAAGAGACAACACTT 59.483 41.667 0.00 0.00 0.00 3.16
185 186 2.572290 ACCTTCTAAGCCACACACAAC 58.428 47.619 0.00 0.00 0.00 3.32
192 193 2.248280 AGCCACACACAACGTATTCA 57.752 45.000 0.00 0.00 0.00 2.57
218 219 1.961277 AACCAACGAGCTTCTGCCG 60.961 57.895 0.00 0.00 40.80 5.69
220 221 2.740055 CAACGAGCTTCTGCCGCT 60.740 61.111 0.00 0.00 41.15 5.52
235 236 1.006805 CGCTGGATCCGGCTAGAAG 60.007 63.158 36.58 20.91 45.52 2.85
236 237 1.369321 GCTGGATCCGGCTAGAAGG 59.631 63.158 34.25 4.99 44.39 3.46
238 239 0.676736 CTGGATCCGGCTAGAAGGAC 59.323 60.000 7.89 4.18 39.66 3.85
239 240 1.107538 TGGATCCGGCTAGAAGGACG 61.108 60.000 7.39 0.00 39.66 4.79
240 241 0.822532 GGATCCGGCTAGAAGGACGA 60.823 60.000 8.53 0.00 40.66 4.20
242 243 1.108132 ATCCGGCTAGAAGGACGACC 61.108 60.000 8.53 0.00 40.66 4.79
243 244 2.408022 CGGCTAGAAGGACGACCG 59.592 66.667 0.00 0.00 40.66 4.79
244 245 2.806237 GGCTAGAAGGACGACCGG 59.194 66.667 0.00 0.00 41.83 5.28
246 247 2.783288 GCTAGAAGGACGACCGGGG 61.783 68.421 6.32 0.00 41.83 5.73
247 248 1.379576 CTAGAAGGACGACCGGGGT 60.380 63.158 6.32 2.45 41.83 4.95
248 249 1.664321 CTAGAAGGACGACCGGGGTG 61.664 65.000 6.32 0.00 41.83 4.61
279 280 4.778143 CCGCGGCTAGGGTTTGCT 62.778 66.667 14.67 0.00 0.00 3.91
303 354 3.842923 CTGCCTCGGGAGCGACAT 61.843 66.667 0.00 0.00 0.00 3.06
304 355 4.147449 TGCCTCGGGAGCGACATG 62.147 66.667 0.00 0.00 0.00 3.21
309 360 2.279120 CGGGAGCGACATGAGAGC 60.279 66.667 0.00 1.31 0.00 4.09
315 366 1.756430 AGCGACATGAGAGCTCTACA 58.244 50.000 18.25 16.41 36.33 2.74
318 369 2.416027 GCGACATGAGAGCTCTACACAA 60.416 50.000 18.25 0.37 0.00 3.33
319 370 3.433709 CGACATGAGAGCTCTACACAAG 58.566 50.000 18.25 10.28 0.00 3.16
320 371 3.733380 CGACATGAGAGCTCTACACAAGG 60.733 52.174 18.25 9.83 0.00 3.61
321 372 3.169099 ACATGAGAGCTCTACACAAGGT 58.831 45.455 18.25 10.44 0.00 3.50
322 373 3.580458 ACATGAGAGCTCTACACAAGGTT 59.420 43.478 18.25 0.00 0.00 3.50
323 374 4.772624 ACATGAGAGCTCTACACAAGGTTA 59.227 41.667 18.25 0.00 0.00 2.85
324 375 5.423610 ACATGAGAGCTCTACACAAGGTTAT 59.576 40.000 18.25 0.00 0.00 1.89
325 376 6.607600 ACATGAGAGCTCTACACAAGGTTATA 59.392 38.462 18.25 0.00 0.00 0.98
326 377 6.701145 TGAGAGCTCTACACAAGGTTATAG 57.299 41.667 18.25 0.00 0.00 1.31
327 378 5.067936 TGAGAGCTCTACACAAGGTTATAGC 59.932 44.000 18.25 0.00 0.00 2.97
328 379 5.205056 AGAGCTCTACACAAGGTTATAGCT 58.795 41.667 16.50 0.00 39.12 3.32
329 380 6.366340 AGAGCTCTACACAAGGTTATAGCTA 58.634 40.000 16.50 0.00 37.59 3.32
330 381 7.007723 AGAGCTCTACACAAGGTTATAGCTAT 58.992 38.462 16.50 11.77 37.59 2.97
331 382 7.507616 AGAGCTCTACACAAGGTTATAGCTATT 59.492 37.037 16.50 0.00 37.59 1.73
332 383 7.662897 AGCTCTACACAAGGTTATAGCTATTC 58.337 38.462 12.39 5.86 36.47 1.75
333 384 6.869388 GCTCTACACAAGGTTATAGCTATTCC 59.131 42.308 12.39 14.37 0.00 3.01
334 385 7.256012 GCTCTACACAAGGTTATAGCTATTCCT 60.256 40.741 12.39 16.29 0.00 3.36
335 386 9.298250 CTCTACACAAGGTTATAGCTATTCCTA 57.702 37.037 22.17 11.19 0.00 2.94
336 387 9.650714 TCTACACAAGGTTATAGCTATTCCTAA 57.349 33.333 22.17 6.58 0.00 2.69
337 388 9.694137 CTACACAAGGTTATAGCTATTCCTAAC 57.306 37.037 22.17 15.77 0.00 2.34
338 389 7.208080 ACACAAGGTTATAGCTATTCCTAACG 58.792 38.462 22.17 17.45 0.00 3.18
339 390 7.069085 ACACAAGGTTATAGCTATTCCTAACGA 59.931 37.037 22.17 0.00 0.00 3.85
340 391 7.595502 CACAAGGTTATAGCTATTCCTAACGAG 59.404 40.741 22.17 15.04 0.00 4.18
341 392 7.504911 ACAAGGTTATAGCTATTCCTAACGAGA 59.495 37.037 22.17 0.00 0.00 4.04
342 393 8.524487 CAAGGTTATAGCTATTCCTAACGAGAT 58.476 37.037 22.17 9.03 0.00 2.75
343 394 9.750783 AAGGTTATAGCTATTCCTAACGAGATA 57.249 33.333 22.17 0.00 0.00 1.98
344 395 9.924010 AGGTTATAGCTATTCCTAACGAGATAT 57.076 33.333 21.18 2.43 0.00 1.63
405 456 9.906660 TGTAGTTTGGATATGTTCATGTTTTTC 57.093 29.630 0.00 0.00 0.00 2.29
408 459 8.090214 AGTTTGGATATGTTCATGTTTTTCTGG 58.910 33.333 0.00 0.00 0.00 3.86
409 460 7.773489 TTGGATATGTTCATGTTTTTCTGGA 57.227 32.000 0.00 0.00 0.00 3.86
410 461 7.959658 TGGATATGTTCATGTTTTTCTGGAT 57.040 32.000 0.00 0.00 0.00 3.41
411 462 8.365060 TGGATATGTTCATGTTTTTCTGGATT 57.635 30.769 0.00 0.00 0.00 3.01
412 463 8.814931 TGGATATGTTCATGTTTTTCTGGATTT 58.185 29.630 0.00 0.00 0.00 2.17
429 480 8.181487 TCTGGATTTATTTTAGTCTTTCGACG 57.819 34.615 0.00 0.00 44.93 5.12
430 481 6.768078 TGGATTTATTTTAGTCTTTCGACGC 58.232 36.000 0.00 0.00 44.93 5.19
431 482 6.592607 TGGATTTATTTTAGTCTTTCGACGCT 59.407 34.615 0.00 0.00 44.93 5.07
432 483 7.760794 TGGATTTATTTTAGTCTTTCGACGCTA 59.239 33.333 0.00 0.00 44.93 4.26
433 484 8.762426 GGATTTATTTTAGTCTTTCGACGCTAT 58.238 33.333 0.00 0.00 44.93 2.97
436 487 8.922058 TTATTTTAGTCTTTCGACGCTATTCT 57.078 30.769 0.00 0.00 44.93 2.40
437 488 6.866179 TTTTAGTCTTTCGACGCTATTCTC 57.134 37.500 0.00 0.00 44.93 2.87
438 489 5.814764 TTAGTCTTTCGACGCTATTCTCT 57.185 39.130 0.00 0.00 44.93 3.10
439 490 4.022464 AGTCTTTCGACGCTATTCTCTG 57.978 45.455 0.00 0.00 44.93 3.35
440 491 3.690139 AGTCTTTCGACGCTATTCTCTGA 59.310 43.478 0.00 0.00 44.93 3.27
441 492 3.787105 GTCTTTCGACGCTATTCTCTGAC 59.213 47.826 0.00 0.00 0.00 3.51
442 493 3.439129 TCTTTCGACGCTATTCTCTGACA 59.561 43.478 0.00 0.00 0.00 3.58
443 494 3.842732 TTCGACGCTATTCTCTGACAA 57.157 42.857 0.00 0.00 0.00 3.18
444 495 3.406728 TCGACGCTATTCTCTGACAAG 57.593 47.619 0.00 0.00 0.00 3.16
445 496 2.747989 TCGACGCTATTCTCTGACAAGT 59.252 45.455 0.00 0.00 0.00 3.16
446 497 3.937079 TCGACGCTATTCTCTGACAAGTA 59.063 43.478 0.00 0.00 0.00 2.24
447 498 4.575236 TCGACGCTATTCTCTGACAAGTAT 59.425 41.667 0.00 0.00 0.00 2.12
448 499 5.756833 TCGACGCTATTCTCTGACAAGTATA 59.243 40.000 0.00 0.00 0.00 1.47
449 500 6.073711 TCGACGCTATTCTCTGACAAGTATAG 60.074 42.308 0.00 0.00 0.00 1.31
450 501 6.292973 CGACGCTATTCTCTGACAAGTATAGT 60.293 42.308 0.00 0.00 0.00 2.12
451 502 6.730175 ACGCTATTCTCTGACAAGTATAGTG 58.270 40.000 15.21 15.21 32.92 2.74
452 503 5.627367 CGCTATTCTCTGACAAGTATAGTGC 59.373 44.000 9.56 0.00 0.00 4.40
453 504 5.627367 GCTATTCTCTGACAAGTATAGTGCG 59.373 44.000 0.00 0.00 0.00 5.34
454 505 5.584253 ATTCTCTGACAAGTATAGTGCGT 57.416 39.130 0.00 0.00 0.00 5.24
455 506 4.357018 TCTCTGACAAGTATAGTGCGTG 57.643 45.455 0.00 0.00 0.00 5.34
456 507 2.854777 CTCTGACAAGTATAGTGCGTGC 59.145 50.000 0.00 0.00 0.00 5.34
457 508 1.583856 CTGACAAGTATAGTGCGTGCG 59.416 52.381 0.00 0.00 0.00 5.34
458 509 1.068125 TGACAAGTATAGTGCGTGCGT 60.068 47.619 0.00 0.00 0.00 5.24
459 510 1.582502 GACAAGTATAGTGCGTGCGTC 59.417 52.381 0.00 0.00 0.00 5.19
460 511 1.068125 ACAAGTATAGTGCGTGCGTCA 60.068 47.619 0.00 0.00 0.00 4.35
461 512 1.989864 CAAGTATAGTGCGTGCGTCAA 59.010 47.619 0.00 0.00 0.00 3.18
462 513 1.625616 AGTATAGTGCGTGCGTCAAC 58.374 50.000 0.00 0.00 0.00 3.18
463 514 1.201647 AGTATAGTGCGTGCGTCAACT 59.798 47.619 0.00 0.00 0.00 3.16
464 515 2.421073 AGTATAGTGCGTGCGTCAACTA 59.579 45.455 6.46 6.46 0.00 2.24
465 516 1.625616 ATAGTGCGTGCGTCAACTAC 58.374 50.000 6.24 0.00 0.00 2.73
466 517 0.311477 TAGTGCGTGCGTCAACTACA 59.689 50.000 0.00 0.00 0.00 2.74
467 518 0.319555 AGTGCGTGCGTCAACTACAT 60.320 50.000 0.00 0.00 0.00 2.29
468 519 1.068125 AGTGCGTGCGTCAACTACATA 60.068 47.619 0.00 0.00 0.00 2.29
469 520 1.722464 GTGCGTGCGTCAACTACATAA 59.278 47.619 0.00 0.00 0.00 1.90
470 521 1.722464 TGCGTGCGTCAACTACATAAC 59.278 47.619 0.00 0.00 0.00 1.89
471 522 1.266211 GCGTGCGTCAACTACATAACG 60.266 52.381 0.00 0.00 38.13 3.18
472 523 1.980844 CGTGCGTCAACTACATAACGT 59.019 47.619 0.00 0.00 37.45 3.99
473 524 2.406024 CGTGCGTCAACTACATAACGTT 59.594 45.455 5.88 5.88 37.45 3.99
474 525 3.121261 CGTGCGTCAACTACATAACGTTT 60.121 43.478 5.91 0.00 37.45 3.60
475 526 4.138817 GTGCGTCAACTACATAACGTTTG 58.861 43.478 5.91 7.50 37.45 2.93
476 527 3.803231 TGCGTCAACTACATAACGTTTGT 59.197 39.130 5.91 13.08 37.45 2.83
477 528 4.270566 TGCGTCAACTACATAACGTTTGTT 59.729 37.500 5.91 2.03 42.19 2.83
478 529 4.605594 GCGTCAACTACATAACGTTTGTTG 59.394 41.667 5.91 13.48 39.83 3.33
479 530 4.605594 CGTCAACTACATAACGTTTGTTGC 59.394 41.667 5.91 9.51 39.07 4.17
480 531 4.605594 GTCAACTACATAACGTTTGTTGCG 59.394 41.667 5.91 7.25 39.07 4.85
481 532 4.507021 TCAACTACATAACGTTTGTTGCGA 59.493 37.500 5.91 9.15 39.07 5.10
482 533 4.379374 ACTACATAACGTTTGTTGCGAC 57.621 40.909 5.91 0.00 39.12 5.19
483 534 4.053295 ACTACATAACGTTTGTTGCGACT 58.947 39.130 5.91 0.00 39.12 4.18
484 535 3.955771 ACATAACGTTTGTTGCGACTT 57.044 38.095 5.91 0.00 39.12 3.01
485 536 3.868835 ACATAACGTTTGTTGCGACTTC 58.131 40.909 5.91 0.00 39.12 3.01
486 537 3.310227 ACATAACGTTTGTTGCGACTTCA 59.690 39.130 5.91 0.00 39.12 3.02
487 538 2.168201 AACGTTTGTTGCGACTTCAC 57.832 45.000 5.50 0.00 36.81 3.18
488 539 0.375803 ACGTTTGTTGCGACTTCACC 59.624 50.000 5.50 0.00 0.00 4.02
489 540 0.653323 CGTTTGTTGCGACTTCACCG 60.653 55.000 5.50 0.00 0.00 4.94
490 541 0.653636 GTTTGTTGCGACTTCACCGA 59.346 50.000 5.50 0.00 0.00 4.69
491 542 1.263217 GTTTGTTGCGACTTCACCGAT 59.737 47.619 5.50 0.00 0.00 4.18
492 543 1.144969 TTGTTGCGACTTCACCGATC 58.855 50.000 5.50 0.00 0.00 3.69
493 544 0.317160 TGTTGCGACTTCACCGATCT 59.683 50.000 5.50 0.00 0.00 2.75
494 545 1.270094 TGTTGCGACTTCACCGATCTT 60.270 47.619 5.50 0.00 0.00 2.40
495 546 2.029739 TGTTGCGACTTCACCGATCTTA 60.030 45.455 5.50 0.00 0.00 2.10
496 547 2.991190 GTTGCGACTTCACCGATCTTAA 59.009 45.455 0.00 0.00 0.00 1.85
497 548 3.520290 TGCGACTTCACCGATCTTAAT 57.480 42.857 0.00 0.00 0.00 1.40
498 549 4.642445 TGCGACTTCACCGATCTTAATA 57.358 40.909 0.00 0.00 0.00 0.98
499 550 5.196341 TGCGACTTCACCGATCTTAATAT 57.804 39.130 0.00 0.00 0.00 1.28
500 551 5.220381 TGCGACTTCACCGATCTTAATATC 58.780 41.667 0.00 0.00 0.00 1.63
501 552 5.220381 GCGACTTCACCGATCTTAATATCA 58.780 41.667 2.22 0.00 0.00 2.15
502 553 5.117287 GCGACTTCACCGATCTTAATATCAC 59.883 44.000 2.22 0.00 0.00 3.06
503 554 5.629849 CGACTTCACCGATCTTAATATCACC 59.370 44.000 2.22 0.00 0.00 4.02
504 555 5.855045 ACTTCACCGATCTTAATATCACCC 58.145 41.667 2.22 0.00 0.00 4.61
505 556 4.514781 TCACCGATCTTAATATCACCCG 57.485 45.455 2.22 0.00 0.00 5.28
506 557 3.257375 TCACCGATCTTAATATCACCCGG 59.743 47.826 0.00 0.00 41.24 5.73
507 558 3.236896 ACCGATCTTAATATCACCCGGT 58.763 45.455 0.00 0.00 43.29 5.28
508 559 3.644738 ACCGATCTTAATATCACCCGGTT 59.355 43.478 0.00 0.00 45.43 4.44
509 560 4.102054 ACCGATCTTAATATCACCCGGTTT 59.898 41.667 0.00 0.00 45.43 3.27
510 561 5.305128 ACCGATCTTAATATCACCCGGTTTA 59.695 40.000 0.00 0.00 45.43 2.01
511 562 6.183360 ACCGATCTTAATATCACCCGGTTTAA 60.183 38.462 0.00 0.00 45.43 1.52
512 563 6.877322 CCGATCTTAATATCACCCGGTTTAAT 59.123 38.462 0.00 0.00 0.00 1.40
513 564 8.036575 CCGATCTTAATATCACCCGGTTTAATA 58.963 37.037 0.00 0.00 0.00 0.98
514 565 9.595823 CGATCTTAATATCACCCGGTTTAATAT 57.404 33.333 0.00 0.00 0.00 1.28
522 573 6.415206 TCACCCGGTTTAATATCTTAGAGG 57.585 41.667 0.00 0.00 0.00 3.69
548 599 0.320374 TAGGGTAGCGTATGCATGCC 59.680 55.000 16.68 7.71 46.23 4.40
559 615 1.091771 ATGCATGCCTACACGTGAGC 61.092 55.000 25.01 21.02 0.00 4.26
574 630 2.096980 CGTGAGCGTCTCCAACTATACA 59.903 50.000 4.73 0.00 0.00 2.29
579 635 3.251245 AGCGTCTCCAACTATACATCTCG 59.749 47.826 0.00 0.00 0.00 4.04
620 676 7.550906 AGTCTTTATCTGTAATGAAAGGCTGAC 59.449 37.037 0.00 0.00 41.15 3.51
642 698 1.845809 GCCGTTGAGTTGCTCTGGTG 61.846 60.000 0.00 0.00 0.00 4.17
649 705 2.945008 TGAGTTGCTCTGGTGAAGTTTG 59.055 45.455 0.00 0.00 0.00 2.93
654 710 1.750682 GCTCTGGTGAAGTTTGGTGGT 60.751 52.381 0.00 0.00 0.00 4.16
693 749 3.089284 CCCTCATCCAACCTGTTAAACC 58.911 50.000 0.00 0.00 0.00 3.27
740 796 3.655810 GAGCAGTCTGGCGGTCTGG 62.656 68.421 19.70 4.64 39.27 3.86
798 854 0.674581 TTGCCATGTCCGCTCTTGAG 60.675 55.000 0.00 0.00 0.00 3.02
799 855 1.078848 GCCATGTCCGCTCTTGAGT 60.079 57.895 0.00 0.00 0.00 3.41
800 856 0.175760 GCCATGTCCGCTCTTGAGTA 59.824 55.000 0.00 0.00 0.00 2.59
801 857 1.927895 CCATGTCCGCTCTTGAGTAC 58.072 55.000 0.00 0.00 0.00 2.73
802 858 1.478510 CCATGTCCGCTCTTGAGTACT 59.521 52.381 0.00 0.00 0.00 2.73
895 955 2.193127 CCAGTCCATAAGTACCCCACA 58.807 52.381 0.00 0.00 0.00 4.17
949 1136 0.037447 GCAAGCTCCAACTTCCTCCT 59.963 55.000 0.00 0.00 0.00 3.69
1035 1592 4.020617 CTGGGCGAGTGCTGGGAA 62.021 66.667 0.00 0.00 42.25 3.97
1038 1595 2.586792 GGCGAGTGCTGGGAAGAT 59.413 61.111 0.00 0.00 42.25 2.40
1049 1606 0.482446 TGGGAAGATTGCAAGTGGGT 59.518 50.000 4.94 0.00 0.00 4.51
1374 3830 2.045131 GGTGTACCGCCTCGACTCT 61.045 63.158 0.00 0.00 0.00 3.24
1555 4011 3.329688 CTGAAGCTCGACTCGCCGT 62.330 63.158 0.00 0.00 0.00 5.68
1631 4087 9.286170 GAAGAAGGACAAGGAGTAGTTAATTTT 57.714 33.333 0.00 0.00 0.00 1.82
1818 4282 5.410355 AATTTGCATGTGCTATGTTTCCT 57.590 34.783 6.55 0.00 42.66 3.36
1825 4289 5.290158 GCATGTGCTATGTTTCCTCATTTTG 59.710 40.000 0.00 0.00 38.21 2.44
1832 4298 7.093814 TGCTATGTTTCCTCATTTTGTTGCTAT 60.094 33.333 0.00 0.00 0.00 2.97
1842 4308 8.461222 CCTCATTTTGTTGCTATAAGATGTGAA 58.539 33.333 10.09 0.00 0.00 3.18
1846 4312 9.956720 ATTTTGTTGCTATAAGATGTGAATAGC 57.043 29.630 9.40 9.40 45.37 2.97
1847 4313 8.737168 TTTGTTGCTATAAGATGTGAATAGCT 57.263 30.769 14.72 0.00 45.37 3.32
1848 4314 9.830975 TTTGTTGCTATAAGATGTGAATAGCTA 57.169 29.630 14.72 0.00 45.37 3.32
1849 4315 9.481340 TTGTTGCTATAAGATGTGAATAGCTAG 57.519 33.333 14.72 0.00 45.37 3.42
1850 4316 8.860088 TGTTGCTATAAGATGTGAATAGCTAGA 58.140 33.333 14.72 6.77 45.37 2.43
1851 4317 9.352784 GTTGCTATAAGATGTGAATAGCTAGAG 57.647 37.037 14.72 0.00 45.37 2.43
1852 4318 8.060931 TGCTATAAGATGTGAATAGCTAGAGG 57.939 38.462 14.72 0.00 45.37 3.69
1853 4319 7.123397 TGCTATAAGATGTGAATAGCTAGAGGG 59.877 40.741 14.72 0.00 45.37 4.30
1854 4320 7.123547 GCTATAAGATGTGAATAGCTAGAGGGT 59.876 40.741 0.00 0.00 43.03 4.34
1855 4321 7.863901 ATAAGATGTGAATAGCTAGAGGGTT 57.136 36.000 0.00 0.00 0.00 4.11
1856 4322 6.567602 AAGATGTGAATAGCTAGAGGGTTT 57.432 37.500 0.00 0.00 0.00 3.27
1857 4323 6.567602 AGATGTGAATAGCTAGAGGGTTTT 57.432 37.500 0.00 0.00 0.00 2.43
1858 4324 6.963322 AGATGTGAATAGCTAGAGGGTTTTT 58.037 36.000 0.00 0.00 0.00 1.94
1859 4325 7.051000 AGATGTGAATAGCTAGAGGGTTTTTC 58.949 38.462 0.00 0.00 0.00 2.29
1860 4326 6.121776 TGTGAATAGCTAGAGGGTTTTTCA 57.878 37.500 0.00 0.00 0.00 2.69
1861 4327 6.539173 TGTGAATAGCTAGAGGGTTTTTCAA 58.461 36.000 0.00 0.00 32.39 2.69
1862 4328 6.655003 TGTGAATAGCTAGAGGGTTTTTCAAG 59.345 38.462 0.00 0.00 32.39 3.02
1863 4329 6.879458 GTGAATAGCTAGAGGGTTTTTCAAGA 59.121 38.462 0.00 0.00 32.39 3.02
1864 4330 7.390718 GTGAATAGCTAGAGGGTTTTTCAAGAA 59.609 37.037 0.00 0.00 32.39 2.52
1865 4331 7.390718 TGAATAGCTAGAGGGTTTTTCAAGAAC 59.609 37.037 0.00 0.00 0.00 3.01
1866 4332 5.048846 AGCTAGAGGGTTTTTCAAGAACA 57.951 39.130 0.00 0.00 0.00 3.18
1867 4333 4.822350 AGCTAGAGGGTTTTTCAAGAACAC 59.178 41.667 0.00 0.00 0.00 3.32
1868 4334 4.578928 GCTAGAGGGTTTTTCAAGAACACA 59.421 41.667 0.00 0.00 32.86 3.72
1869 4335 4.983671 AGAGGGTTTTTCAAGAACACAC 57.016 40.909 0.00 0.00 32.86 3.82
1870 4336 4.340617 AGAGGGTTTTTCAAGAACACACA 58.659 39.130 0.00 0.00 32.86 3.72
1871 4337 4.157840 AGAGGGTTTTTCAAGAACACACAC 59.842 41.667 0.00 0.00 32.86 3.82
1872 4338 4.086457 AGGGTTTTTCAAGAACACACACT 58.914 39.130 0.00 0.00 32.86 3.55
1873 4339 4.082245 AGGGTTTTTCAAGAACACACACTG 60.082 41.667 0.00 0.00 32.86 3.66
1874 4340 4.321675 GGGTTTTTCAAGAACACACACTGT 60.322 41.667 0.00 0.00 30.81 3.55
1891 4357 7.110179 CACACTGTGTGTCTTCTGTATTAAG 57.890 40.000 28.19 1.56 43.92 1.85
1892 4358 6.923508 CACACTGTGTGTCTTCTGTATTAAGA 59.076 38.462 28.19 0.00 43.92 2.10
1893 4359 7.600375 CACACTGTGTGTCTTCTGTATTAAGAT 59.400 37.037 28.19 0.00 43.92 2.40
1894 4360 7.600375 ACACTGTGTGTCTTCTGTATTAAGATG 59.400 37.037 13.50 0.00 43.92 2.90
1895 4361 7.814587 CACTGTGTGTCTTCTGTATTAAGATGA 59.185 37.037 0.00 0.00 35.53 2.92
1896 4362 8.367911 ACTGTGTGTCTTCTGTATTAAGATGAA 58.632 33.333 0.00 0.00 35.53 2.57
1897 4363 9.208022 CTGTGTGTCTTCTGTATTAAGATGAAA 57.792 33.333 0.00 0.00 35.53 2.69
1898 4364 9.725019 TGTGTGTCTTCTGTATTAAGATGAAAT 57.275 29.630 0.00 0.00 35.53 2.17
1901 4367 9.495754 GTGTCTTCTGTATTAAGATGAAATTGC 57.504 33.333 0.00 0.00 35.53 3.56
1902 4368 9.453572 TGTCTTCTGTATTAAGATGAAATTGCT 57.546 29.630 0.00 0.00 35.53 3.91
1915 4381 9.553064 AAGATGAAATTGCTAGATACCACTAAG 57.447 33.333 0.00 0.00 0.00 2.18
1916 4382 8.928448 AGATGAAATTGCTAGATACCACTAAGA 58.072 33.333 0.00 0.00 0.00 2.10
1917 4383 9.547753 GATGAAATTGCTAGATACCACTAAGAA 57.452 33.333 0.00 0.00 0.00 2.52
1922 4388 9.495572 AATTGCTAGATACCACTAAGAATAAGC 57.504 33.333 0.00 0.00 0.00 3.09
1923 4389 6.678878 TGCTAGATACCACTAAGAATAAGCG 58.321 40.000 0.00 0.00 0.00 4.68
1924 4390 6.094061 GCTAGATACCACTAAGAATAAGCGG 58.906 44.000 0.00 0.00 0.00 5.52
1925 4391 6.294620 GCTAGATACCACTAAGAATAAGCGGT 60.295 42.308 0.00 0.00 0.00 5.68
1926 4392 6.481434 AGATACCACTAAGAATAAGCGGTT 57.519 37.500 4.76 4.76 0.00 4.44
1927 4393 7.592885 AGATACCACTAAGAATAAGCGGTTA 57.407 36.000 9.85 9.85 0.00 2.85
1928 4394 7.659186 AGATACCACTAAGAATAAGCGGTTAG 58.341 38.462 13.14 2.19 0.00 2.34
1946 4412 8.306680 GCGGTTAGCTATCTAATAAACAATCA 57.693 34.615 0.00 0.00 44.04 2.57
1947 4413 8.770828 GCGGTTAGCTATCTAATAAACAATCAA 58.229 33.333 0.00 0.00 44.04 2.57
1990 4456 5.717119 AAATTGCTAGATGGTAGTCCCTT 57.283 39.130 0.00 0.00 0.00 3.95
1995 4461 3.243468 GCTAGATGGTAGTCCCTTCGTTC 60.243 52.174 0.00 0.00 41.27 3.95
1996 4462 2.816411 AGATGGTAGTCCCTTCGTTCA 58.184 47.619 0.00 0.00 41.27 3.18
1997 4463 3.375699 AGATGGTAGTCCCTTCGTTCAT 58.624 45.455 0.00 0.00 41.27 2.57
1998 4464 4.543689 AGATGGTAGTCCCTTCGTTCATA 58.456 43.478 0.00 0.00 41.27 2.15
2001 4467 5.687166 TGGTAGTCCCTTCGTTCATAAAT 57.313 39.130 0.00 0.00 0.00 1.40
2002 4468 6.795144 TGGTAGTCCCTTCGTTCATAAATA 57.205 37.500 0.00 0.00 0.00 1.40
2005 4471 8.926374 TGGTAGTCCCTTCGTTCATAAATATAA 58.074 33.333 0.00 0.00 0.00 0.98
2006 4472 9.201127 GGTAGTCCCTTCGTTCATAAATATAAC 57.799 37.037 0.00 0.00 0.00 1.89
2010 4476 8.504005 GTCCCTTCGTTCATAAATATAACATGG 58.496 37.037 0.00 0.00 0.00 3.66
2011 4477 8.215050 TCCCTTCGTTCATAAATATAACATGGT 58.785 33.333 0.00 0.00 0.00 3.55
2064 4545 7.140705 TGAAATGAGTGAGCAAACACATTAAG 58.859 34.615 12.47 0.00 39.46 1.85
2067 4548 4.211164 TGAGTGAGCAAACACATTAAGACG 59.789 41.667 10.34 0.00 42.45 4.18
2151 4632 7.741027 GCATATTGCAGCATGGACTATATAT 57.259 36.000 0.00 0.00 44.26 0.86
2152 4633 7.582352 GCATATTGCAGCATGGACTATATATG 58.418 38.462 12.33 12.33 44.26 1.78
2153 4634 7.308408 GCATATTGCAGCATGGACTATATATGG 60.308 40.741 16.11 0.00 44.26 2.74
2154 4635 5.760484 TTGCAGCATGGACTATATATGGA 57.240 39.130 2.68 0.00 34.66 3.41
2155 4636 5.963214 TGCAGCATGGACTATATATGGAT 57.037 39.130 2.68 0.00 35.86 3.41
2156 4637 5.677567 TGCAGCATGGACTATATATGGATG 58.322 41.667 2.68 0.00 35.86 3.51
2159 4640 6.825213 GCAGCATGGACTATATATGGATGAAA 59.175 38.462 2.68 0.00 35.86 2.69
2160 4641 7.501559 GCAGCATGGACTATATATGGATGAAAT 59.498 37.037 2.68 0.00 35.86 2.17
2187 4668 8.967552 AATGAAAACAAACACACTAAAACGTA 57.032 26.923 0.00 0.00 0.00 3.57
2188 4669 9.575783 AATGAAAACAAACACACTAAAACGTAT 57.424 25.926 0.00 0.00 0.00 3.06
2189 4670 8.967552 TGAAAACAAACACACTAAAACGTATT 57.032 26.923 0.00 0.00 0.00 1.89
2245 4727 8.432805 AGAACATCTTATATTAGTGTTGGAGGG 58.567 37.037 11.68 0.00 33.55 4.30
2257 4739 4.475016 AGTGTTGGAGGGAGTAGCATTTAT 59.525 41.667 0.00 0.00 0.00 1.40
2264 4746 7.196187 TGGAGGGAGTAGCATTTATCCATATA 58.804 38.462 0.00 0.00 33.24 0.86
2406 4925 2.423538 AGTATACACGGTGGTTCGTACC 59.576 50.000 13.48 3.92 45.26 3.34
2441 4960 1.289380 GAGAAAGCGTCGTCCCAGT 59.711 57.895 0.00 0.00 0.00 4.00
2445 4964 1.164041 AAAGCGTCGTCCCAGTTTGG 61.164 55.000 0.00 0.00 37.25 3.28
2446 4965 2.280592 GCGTCGTCCCAGTTTGGT 60.281 61.111 0.00 0.00 35.17 3.67
2447 4966 1.890510 GCGTCGTCCCAGTTTGGTT 60.891 57.895 0.00 0.00 35.17 3.67
2448 4967 0.600782 GCGTCGTCCCAGTTTGGTTA 60.601 55.000 0.00 0.00 35.17 2.85
2449 4968 1.942586 GCGTCGTCCCAGTTTGGTTAT 60.943 52.381 0.00 0.00 35.17 1.89
2450 4969 1.730064 CGTCGTCCCAGTTTGGTTATG 59.270 52.381 0.00 0.00 35.17 1.90
2451 4970 2.610976 CGTCGTCCCAGTTTGGTTATGA 60.611 50.000 0.00 0.00 35.17 2.15
2452 4971 3.606687 GTCGTCCCAGTTTGGTTATGAT 58.393 45.455 0.00 0.00 35.17 2.45
2453 4972 3.374058 GTCGTCCCAGTTTGGTTATGATG 59.626 47.826 0.00 0.00 35.17 3.07
2454 4973 2.097466 CGTCCCAGTTTGGTTATGATGC 59.903 50.000 0.00 0.00 35.17 3.91
2455 4974 2.097466 GTCCCAGTTTGGTTATGATGCG 59.903 50.000 0.00 0.00 35.17 4.73
2456 4975 1.405105 CCCAGTTTGGTTATGATGCGG 59.595 52.381 0.00 0.00 35.17 5.69
2457 4976 2.091541 CCAGTTTGGTTATGATGCGGT 58.908 47.619 0.00 0.00 31.35 5.68
2458 4977 2.491693 CCAGTTTGGTTATGATGCGGTT 59.508 45.455 0.00 0.00 31.35 4.44
2459 4978 3.500982 CAGTTTGGTTATGATGCGGTTG 58.499 45.455 0.00 0.00 0.00 3.77
2460 4979 3.057596 CAGTTTGGTTATGATGCGGTTGT 60.058 43.478 0.00 0.00 0.00 3.32
2461 4980 3.057596 AGTTTGGTTATGATGCGGTTGTG 60.058 43.478 0.00 0.00 0.00 3.33
2462 4981 0.808125 TGGTTATGATGCGGTTGTGC 59.192 50.000 0.00 0.00 0.00 4.57
2463 4982 0.100503 GGTTATGATGCGGTTGTGCC 59.899 55.000 0.00 0.00 0.00 5.01
2464 4983 1.094785 GTTATGATGCGGTTGTGCCT 58.905 50.000 0.00 0.00 34.25 4.75
2465 4984 1.472480 GTTATGATGCGGTTGTGCCTT 59.528 47.619 0.00 0.00 34.25 4.35
2466 4985 1.378531 TATGATGCGGTTGTGCCTTC 58.621 50.000 0.00 0.00 34.25 3.46
2467 4986 1.315257 ATGATGCGGTTGTGCCTTCC 61.315 55.000 0.00 0.00 34.25 3.46
2468 4987 1.971167 GATGCGGTTGTGCCTTCCA 60.971 57.895 0.00 0.00 34.25 3.53
2469 4988 2.200170 GATGCGGTTGTGCCTTCCAC 62.200 60.000 0.00 0.00 44.90 4.02
2470 4989 2.594592 GCGGTTGTGCCTTCCACT 60.595 61.111 0.00 0.00 44.92 4.00
2471 4990 2.908073 GCGGTTGTGCCTTCCACTG 61.908 63.158 0.00 0.00 44.92 3.66
2472 4991 1.525995 CGGTTGTGCCTTCCACTGT 60.526 57.895 0.00 0.00 44.92 3.55
2473 4992 1.507141 CGGTTGTGCCTTCCACTGTC 61.507 60.000 0.00 0.00 44.92 3.51
2474 4993 0.179018 GGTTGTGCCTTCCACTGTCT 60.179 55.000 0.00 0.00 44.92 3.41
2475 4994 0.947244 GTTGTGCCTTCCACTGTCTG 59.053 55.000 0.00 0.00 44.92 3.51
2476 4995 0.179020 TTGTGCCTTCCACTGTCTGG 60.179 55.000 0.00 0.00 44.92 3.86
2483 5002 2.290847 TCCACTGTCTGGATGGAGC 58.709 57.895 0.00 0.00 44.99 4.70
2484 5003 0.545071 TCCACTGTCTGGATGGAGCA 60.545 55.000 0.00 0.00 44.99 4.26
2485 5004 0.392193 CCACTGTCTGGATGGAGCAC 60.392 60.000 0.00 0.00 43.95 4.40
2486 5005 0.322648 CACTGTCTGGATGGAGCACA 59.677 55.000 0.00 0.00 0.00 4.57
2487 5006 1.065636 CACTGTCTGGATGGAGCACAT 60.066 52.381 0.00 0.00 44.18 3.21
2488 5007 1.065636 ACTGTCTGGATGGAGCACATG 60.066 52.381 0.00 0.00 40.72 3.21
2489 5008 0.393402 TGTCTGGATGGAGCACATGC 60.393 55.000 6.06 6.06 46.95 4.06
2490 5009 1.099879 GTCTGGATGGAGCACATGCC 61.100 60.000 9.72 6.67 46.30 4.40
2491 5010 1.226542 CTGGATGGAGCACATGCCT 59.773 57.895 9.72 0.00 46.30 4.75
2492 5011 1.077285 TGGATGGAGCACATGCCTG 60.077 57.895 9.72 0.00 46.30 4.85
2493 5012 1.225426 GGATGGAGCACATGCCTGA 59.775 57.895 0.00 0.00 41.59 3.86
2494 5013 1.099879 GGATGGAGCACATGCCTGAC 61.100 60.000 0.00 0.00 41.59 3.51
2495 5014 0.107312 GATGGAGCACATGCCTGACT 60.107 55.000 0.00 0.00 40.72 3.41
2496 5015 0.330604 ATGGAGCACATGCCTGACTT 59.669 50.000 0.00 0.00 43.38 3.01
2497 5016 0.111061 TGGAGCACATGCCTGACTTT 59.889 50.000 0.00 0.00 43.38 2.66
2498 5017 0.524862 GGAGCACATGCCTGACTTTG 59.475 55.000 0.00 0.00 43.38 2.77
2499 5018 1.242076 GAGCACATGCCTGACTTTGT 58.758 50.000 0.00 0.00 43.38 2.83
2500 5019 2.426522 GAGCACATGCCTGACTTTGTA 58.573 47.619 0.00 0.00 43.38 2.41
2501 5020 2.813754 GAGCACATGCCTGACTTTGTAA 59.186 45.455 0.00 0.00 43.38 2.41
2502 5021 3.221771 AGCACATGCCTGACTTTGTAAA 58.778 40.909 0.00 0.00 43.38 2.01
2503 5022 3.828451 AGCACATGCCTGACTTTGTAAAT 59.172 39.130 0.00 0.00 43.38 1.40
2504 5023 3.922240 GCACATGCCTGACTTTGTAAATG 59.078 43.478 0.00 0.00 34.31 2.32
2505 5024 3.922240 CACATGCCTGACTTTGTAAATGC 59.078 43.478 0.00 0.00 0.00 3.56
2506 5025 3.573538 ACATGCCTGACTTTGTAAATGCA 59.426 39.130 0.00 0.00 0.00 3.96
2507 5026 4.221262 ACATGCCTGACTTTGTAAATGCAT 59.779 37.500 0.00 0.00 38.63 3.96
2508 5027 4.870123 TGCCTGACTTTGTAAATGCATT 57.130 36.364 5.99 5.99 0.00 3.56
2509 5028 4.558178 TGCCTGACTTTGTAAATGCATTG 58.442 39.130 13.82 1.37 0.00 2.82
2510 5029 3.928375 GCCTGACTTTGTAAATGCATTGG 59.072 43.478 13.82 6.72 0.00 3.16
2511 5030 4.561326 GCCTGACTTTGTAAATGCATTGGT 60.561 41.667 13.82 0.05 0.00 3.67
2512 5031 5.540911 CCTGACTTTGTAAATGCATTGGTT 58.459 37.500 13.82 0.00 0.00 3.67
2513 5032 5.406175 CCTGACTTTGTAAATGCATTGGTTG 59.594 40.000 13.82 4.49 0.00 3.77
2542 5061 4.385358 AAGTCATTTTGAGCGGTTTTGT 57.615 36.364 0.00 0.00 0.00 2.83
2543 5062 3.964909 AGTCATTTTGAGCGGTTTTGTC 58.035 40.909 0.00 0.00 0.00 3.18
2544 5063 3.380004 AGTCATTTTGAGCGGTTTTGTCA 59.620 39.130 0.00 0.00 0.00 3.58
2545 5064 4.037923 AGTCATTTTGAGCGGTTTTGTCAT 59.962 37.500 0.00 0.00 0.00 3.06
2546 5065 4.148696 GTCATTTTGAGCGGTTTTGTCATG 59.851 41.667 0.00 0.00 0.00 3.07
2547 5066 3.791973 TTTTGAGCGGTTTTGTCATGT 57.208 38.095 0.00 0.00 0.00 3.21
2548 5067 4.902443 TTTTGAGCGGTTTTGTCATGTA 57.098 36.364 0.00 0.00 0.00 2.29
2549 5068 3.889196 TTGAGCGGTTTTGTCATGTAC 57.111 42.857 0.00 0.00 0.00 2.90
2550 5069 2.147958 TGAGCGGTTTTGTCATGTACC 58.852 47.619 0.00 0.00 0.00 3.34
2556 5075 4.408993 GGTTTTGTCATGTACCGGTAAC 57.591 45.455 17.78 11.63 0.00 2.50
2557 5076 3.189080 GGTTTTGTCATGTACCGGTAACC 59.811 47.826 17.78 14.88 0.00 2.85
2558 5077 3.766068 TTTGTCATGTACCGGTAACCA 57.234 42.857 17.78 11.86 0.00 3.67
2559 5078 3.766068 TTGTCATGTACCGGTAACCAA 57.234 42.857 17.78 11.55 0.00 3.67
2560 5079 3.985019 TGTCATGTACCGGTAACCAAT 57.015 42.857 17.78 5.23 0.00 3.16
2561 5080 3.864243 TGTCATGTACCGGTAACCAATC 58.136 45.455 17.78 3.01 0.00 2.67
2562 5081 3.200483 GTCATGTACCGGTAACCAATCC 58.800 50.000 17.78 2.20 0.00 3.01
2563 5082 2.838813 TCATGTACCGGTAACCAATCCA 59.161 45.455 17.78 8.65 0.00 3.41
2564 5083 3.456644 TCATGTACCGGTAACCAATCCAT 59.543 43.478 17.78 10.74 0.00 3.41
2565 5084 3.547054 TGTACCGGTAACCAATCCATC 57.453 47.619 17.78 0.00 0.00 3.51
2566 5085 2.838813 TGTACCGGTAACCAATCCATCA 59.161 45.455 17.78 2.79 0.00 3.07
2567 5086 2.413310 ACCGGTAACCAATCCATCAC 57.587 50.000 4.49 0.00 0.00 3.06
2568 5087 1.913419 ACCGGTAACCAATCCATCACT 59.087 47.619 4.49 0.00 0.00 3.41
2569 5088 2.093128 ACCGGTAACCAATCCATCACTC 60.093 50.000 4.49 0.00 0.00 3.51
2570 5089 2.093181 CCGGTAACCAATCCATCACTCA 60.093 50.000 0.00 0.00 0.00 3.41
2571 5090 3.433598 CCGGTAACCAATCCATCACTCAT 60.434 47.826 0.00 0.00 0.00 2.90
2572 5091 3.561310 CGGTAACCAATCCATCACTCATG 59.439 47.826 0.00 0.00 0.00 3.07
2573 5092 3.316308 GGTAACCAATCCATCACTCATGC 59.684 47.826 0.00 0.00 0.00 4.06
2574 5093 2.812836 ACCAATCCATCACTCATGCA 57.187 45.000 0.00 0.00 0.00 3.96
2575 5094 3.308035 ACCAATCCATCACTCATGCAT 57.692 42.857 0.00 0.00 0.00 3.96
2576 5095 2.956333 ACCAATCCATCACTCATGCATG 59.044 45.455 21.07 21.07 0.00 4.06
2577 5096 2.288213 CCAATCCATCACTCATGCATGC 60.288 50.000 22.25 11.82 0.00 4.06
2578 5097 2.358322 ATCCATCACTCATGCATGCA 57.642 45.000 25.04 25.04 0.00 3.96
2579 5098 2.358322 TCCATCACTCATGCATGCAT 57.642 45.000 27.46 27.46 37.08 3.96
2580 5099 2.661718 TCCATCACTCATGCATGCATT 58.338 42.857 30.32 14.09 33.90 3.56
2581 5100 2.621526 TCCATCACTCATGCATGCATTC 59.378 45.455 30.32 0.00 33.90 2.67
2582 5101 2.360801 CCATCACTCATGCATGCATTCA 59.639 45.455 30.32 18.32 33.90 2.57
2583 5102 3.550842 CCATCACTCATGCATGCATTCAG 60.551 47.826 30.32 27.36 33.90 3.02
2584 5103 2.993937 TCACTCATGCATGCATTCAGA 58.006 42.857 30.54 23.76 33.90 3.27
2585 5104 3.551846 TCACTCATGCATGCATTCAGAT 58.448 40.909 30.54 18.01 33.90 2.90
2586 5105 3.951680 TCACTCATGCATGCATTCAGATT 59.048 39.130 30.54 18.59 33.90 2.40
2587 5106 4.401202 TCACTCATGCATGCATTCAGATTT 59.599 37.500 30.54 15.19 33.90 2.17
2588 5107 4.504097 CACTCATGCATGCATTCAGATTTG 59.496 41.667 30.54 20.51 33.90 2.32
2589 5108 4.159693 ACTCATGCATGCATTCAGATTTGT 59.840 37.500 30.54 18.08 33.90 2.83
2590 5109 4.429108 TCATGCATGCATTCAGATTTGTG 58.571 39.130 30.32 16.48 33.90 3.33
2591 5110 3.945981 TGCATGCATTCAGATTTGTGT 57.054 38.095 18.46 0.00 0.00 3.72
2592 5111 3.840468 TGCATGCATTCAGATTTGTGTC 58.160 40.909 18.46 0.00 0.00 3.67
2593 5112 2.850060 GCATGCATTCAGATTTGTGTCG 59.150 45.455 14.21 0.00 0.00 4.35
2594 5113 2.617250 TGCATTCAGATTTGTGTCGC 57.383 45.000 0.00 0.00 0.00 5.19
2595 5114 2.153645 TGCATTCAGATTTGTGTCGCT 58.846 42.857 0.00 0.00 0.00 4.93
2596 5115 2.095617 TGCATTCAGATTTGTGTCGCTG 60.096 45.455 0.00 0.00 0.00 5.18
2597 5116 2.095567 GCATTCAGATTTGTGTCGCTGT 60.096 45.455 0.00 0.00 0.00 4.40
2598 5117 3.485633 CATTCAGATTTGTGTCGCTGTG 58.514 45.455 0.00 0.00 0.00 3.66
2599 5118 2.524569 TCAGATTTGTGTCGCTGTGA 57.475 45.000 0.00 0.00 0.00 3.58
2600 5119 2.407090 TCAGATTTGTGTCGCTGTGAG 58.593 47.619 0.00 0.00 0.00 3.51
2601 5120 2.138320 CAGATTTGTGTCGCTGTGAGT 58.862 47.619 0.00 0.00 0.00 3.41
2602 5121 3.005367 TCAGATTTGTGTCGCTGTGAGTA 59.995 43.478 0.00 0.00 0.00 2.59
2603 5122 3.928992 CAGATTTGTGTCGCTGTGAGTAT 59.071 43.478 0.00 0.00 0.00 2.12
2604 5123 4.389992 CAGATTTGTGTCGCTGTGAGTATT 59.610 41.667 0.00 0.00 0.00 1.89
2605 5124 4.627467 AGATTTGTGTCGCTGTGAGTATTC 59.373 41.667 0.00 0.00 0.00 1.75
2606 5125 3.660501 TTGTGTCGCTGTGAGTATTCT 57.339 42.857 0.00 0.00 0.00 2.40
2607 5126 4.776795 TTGTGTCGCTGTGAGTATTCTA 57.223 40.909 0.00 0.00 0.00 2.10
2608 5127 4.983671 TGTGTCGCTGTGAGTATTCTAT 57.016 40.909 0.00 0.00 0.00 1.98
2609 5128 5.324784 TGTGTCGCTGTGAGTATTCTATT 57.675 39.130 0.00 0.00 0.00 1.73
2610 5129 5.340803 TGTGTCGCTGTGAGTATTCTATTC 58.659 41.667 0.00 0.00 0.00 1.75
2611 5130 5.125578 TGTGTCGCTGTGAGTATTCTATTCT 59.874 40.000 0.00 0.00 0.00 2.40
2612 5131 5.683743 GTGTCGCTGTGAGTATTCTATTCTC 59.316 44.000 0.00 0.00 0.00 2.87
2613 5132 5.357032 TGTCGCTGTGAGTATTCTATTCTCA 59.643 40.000 0.00 0.00 34.83 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.632377 AGTTATGATGTCCTTGGTGCG 58.368 47.619 0.00 0.00 0.00 5.34
1 2 4.009675 TGAAGTTATGATGTCCTTGGTGC 58.990 43.478 0.00 0.00 0.00 5.01
2 3 5.248640 ACTGAAGTTATGATGTCCTTGGTG 58.751 41.667 0.00 0.00 0.00 4.17
3 4 5.505181 ACTGAAGTTATGATGTCCTTGGT 57.495 39.130 0.00 0.00 0.00 3.67
4 5 6.093219 CAGAACTGAAGTTATGATGTCCTTGG 59.907 42.308 11.48 0.00 46.76 3.61
5 6 7.069852 CAGAACTGAAGTTATGATGTCCTTG 57.930 40.000 11.48 0.00 46.76 3.61
14 15 6.817641 AGCTCTTCATCAGAACTGAAGTTATG 59.182 38.462 10.81 10.81 46.27 1.90
15 16 6.945218 AGCTCTTCATCAGAACTGAAGTTAT 58.055 36.000 8.59 0.00 46.27 1.89
16 17 6.352016 AGCTCTTCATCAGAACTGAAGTTA 57.648 37.500 8.59 0.00 46.27 2.24
17 18 5.226194 AGCTCTTCATCAGAACTGAAGTT 57.774 39.130 8.59 0.00 46.27 2.66
18 19 4.888326 AGCTCTTCATCAGAACTGAAGT 57.112 40.909 8.59 0.00 46.27 3.01
20 21 8.509690 CATTTTTAGCTCTTCATCAGAACTGAA 58.490 33.333 8.59 0.00 43.58 3.02
21 22 7.120285 CCATTTTTAGCTCTTCATCAGAACTGA 59.880 37.037 6.98 6.98 44.59 3.41
22 23 7.249147 CCATTTTTAGCTCTTCATCAGAACTG 58.751 38.462 0.00 0.00 30.14 3.16
23 24 6.376581 CCCATTTTTAGCTCTTCATCAGAACT 59.623 38.462 0.00 0.00 32.37 3.01
24 25 6.375455 TCCCATTTTTAGCTCTTCATCAGAAC 59.625 38.462 0.00 0.00 0.00 3.01
25 26 6.484288 TCCCATTTTTAGCTCTTCATCAGAA 58.516 36.000 0.00 0.00 0.00 3.02
26 27 6.065976 TCCCATTTTTAGCTCTTCATCAGA 57.934 37.500 0.00 0.00 0.00 3.27
27 28 6.376581 AGTTCCCATTTTTAGCTCTTCATCAG 59.623 38.462 0.00 0.00 0.00 2.90
28 29 6.248433 AGTTCCCATTTTTAGCTCTTCATCA 58.752 36.000 0.00 0.00 0.00 3.07
29 30 6.765915 AGTTCCCATTTTTAGCTCTTCATC 57.234 37.500 0.00 0.00 0.00 2.92
30 31 7.201857 GCATAGTTCCCATTTTTAGCTCTTCAT 60.202 37.037 0.00 0.00 0.00 2.57
31 32 6.095440 GCATAGTTCCCATTTTTAGCTCTTCA 59.905 38.462 0.00 0.00 0.00 3.02
32 33 6.095440 TGCATAGTTCCCATTTTTAGCTCTTC 59.905 38.462 0.00 0.00 0.00 2.87
33 34 5.951747 TGCATAGTTCCCATTTTTAGCTCTT 59.048 36.000 0.00 0.00 0.00 2.85
34 35 5.509498 TGCATAGTTCCCATTTTTAGCTCT 58.491 37.500 0.00 0.00 0.00 4.09
35 36 5.835113 TGCATAGTTCCCATTTTTAGCTC 57.165 39.130 0.00 0.00 0.00 4.09
36 37 5.127682 CCTTGCATAGTTCCCATTTTTAGCT 59.872 40.000 0.00 0.00 0.00 3.32
37 38 5.105351 ACCTTGCATAGTTCCCATTTTTAGC 60.105 40.000 0.00 0.00 0.00 3.09
38 39 6.530019 ACCTTGCATAGTTCCCATTTTTAG 57.470 37.500 0.00 0.00 0.00 1.85
39 40 6.295575 CCAACCTTGCATAGTTCCCATTTTTA 60.296 38.462 0.00 0.00 0.00 1.52
40 41 5.512921 CCAACCTTGCATAGTTCCCATTTTT 60.513 40.000 0.00 0.00 0.00 1.94
41 42 4.020307 CCAACCTTGCATAGTTCCCATTTT 60.020 41.667 0.00 0.00 0.00 1.82
42 43 3.515104 CCAACCTTGCATAGTTCCCATTT 59.485 43.478 0.00 0.00 0.00 2.32
43 44 3.099141 CCAACCTTGCATAGTTCCCATT 58.901 45.455 0.00 0.00 0.00 3.16
44 45 2.738743 CCAACCTTGCATAGTTCCCAT 58.261 47.619 0.00 0.00 0.00 4.00
45 46 1.890573 GCCAACCTTGCATAGTTCCCA 60.891 52.381 0.00 0.00 0.00 4.37
46 47 0.817654 GCCAACCTTGCATAGTTCCC 59.182 55.000 0.00 0.00 0.00 3.97
47 48 0.451783 CGCCAACCTTGCATAGTTCC 59.548 55.000 0.00 0.00 0.00 3.62
48 49 1.130561 GACGCCAACCTTGCATAGTTC 59.869 52.381 0.00 0.00 0.00 3.01
49 50 1.165270 GACGCCAACCTTGCATAGTT 58.835 50.000 0.00 0.00 0.00 2.24
50 51 0.036164 TGACGCCAACCTTGCATAGT 59.964 50.000 0.00 0.00 0.00 2.12
51 52 0.447801 GTGACGCCAACCTTGCATAG 59.552 55.000 0.00 0.00 0.00 2.23
52 53 0.036164 AGTGACGCCAACCTTGCATA 59.964 50.000 0.00 0.00 0.00 3.14
53 54 1.228245 AGTGACGCCAACCTTGCAT 60.228 52.632 0.00 0.00 0.00 3.96
54 55 2.186160 CAGTGACGCCAACCTTGCA 61.186 57.895 0.00 0.00 0.00 4.08
55 56 1.444119 TTCAGTGACGCCAACCTTGC 61.444 55.000 0.00 0.00 0.00 4.01
56 57 0.588252 CTTCAGTGACGCCAACCTTG 59.412 55.000 0.00 0.00 0.00 3.61
57 58 0.468226 TCTTCAGTGACGCCAACCTT 59.532 50.000 0.00 0.00 0.00 3.50
58 59 0.687354 ATCTTCAGTGACGCCAACCT 59.313 50.000 0.00 0.00 0.00 3.50
59 60 1.079503 GATCTTCAGTGACGCCAACC 58.920 55.000 0.00 0.00 0.00 3.77
60 61 1.461127 GTGATCTTCAGTGACGCCAAC 59.539 52.381 0.00 0.00 0.00 3.77
61 62 1.344438 AGTGATCTTCAGTGACGCCAA 59.656 47.619 0.00 0.00 0.00 4.52
62 63 0.969149 AGTGATCTTCAGTGACGCCA 59.031 50.000 0.00 0.00 0.00 5.69
63 64 1.067565 TCAGTGATCTTCAGTGACGCC 60.068 52.381 10.26 0.00 46.53 5.68
64 65 2.257894 CTCAGTGATCTTCAGTGACGC 58.742 52.381 10.26 0.00 46.53 5.19
65 66 2.230025 ACCTCAGTGATCTTCAGTGACG 59.770 50.000 10.26 9.41 46.53 4.35
66 67 3.256879 TCACCTCAGTGATCTTCAGTGAC 59.743 47.826 10.26 0.00 46.53 3.67
78 79 0.179048 TGCAAGTGGTCACCTCAGTG 60.179 55.000 0.00 0.00 46.00 3.66
79 80 0.546122 TTGCAAGTGGTCACCTCAGT 59.454 50.000 0.00 0.00 0.00 3.41
80 81 0.947244 GTTGCAAGTGGTCACCTCAG 59.053 55.000 0.00 0.00 0.00 3.35
81 82 0.546122 AGTTGCAAGTGGTCACCTCA 59.454 50.000 5.84 0.00 0.00 3.86
82 83 1.230324 GAGTTGCAAGTGGTCACCTC 58.770 55.000 12.53 2.46 0.00 3.85
83 84 0.546122 TGAGTTGCAAGTGGTCACCT 59.454 50.000 12.53 0.00 0.00 4.00
84 85 1.537202 GATGAGTTGCAAGTGGTCACC 59.463 52.381 12.53 0.00 0.00 4.02
85 86 2.031682 GTGATGAGTTGCAAGTGGTCAC 60.032 50.000 22.67 22.67 0.00 3.67
86 87 2.158769 AGTGATGAGTTGCAAGTGGTCA 60.159 45.455 12.53 12.22 0.00 4.02
87 88 2.225019 CAGTGATGAGTTGCAAGTGGTC 59.775 50.000 12.53 9.74 0.00 4.02
88 89 2.158769 TCAGTGATGAGTTGCAAGTGGT 60.159 45.455 12.53 0.00 0.00 4.16
89 90 2.483106 CTCAGTGATGAGTTGCAAGTGG 59.517 50.000 12.53 0.00 0.00 4.00
90 91 2.095869 GCTCAGTGATGAGTTGCAAGTG 60.096 50.000 12.53 0.00 38.16 3.16
91 92 2.149578 GCTCAGTGATGAGTTGCAAGT 58.850 47.619 6.46 6.46 38.16 3.16
92 93 2.424557 AGCTCAGTGATGAGTTGCAAG 58.575 47.619 0.00 0.00 38.16 4.01
93 94 2.556144 AGCTCAGTGATGAGTTGCAA 57.444 45.000 0.00 0.00 38.16 4.08
94 95 2.551032 CAAAGCTCAGTGATGAGTTGCA 59.449 45.455 7.07 0.00 38.16 4.08
95 96 2.551459 ACAAAGCTCAGTGATGAGTTGC 59.449 45.455 7.07 0.00 38.16 4.17
96 97 3.811497 TGACAAAGCTCAGTGATGAGTTG 59.189 43.478 7.07 6.99 38.16 3.16
97 98 4.077300 TGACAAAGCTCAGTGATGAGTT 57.923 40.909 7.07 0.00 38.16 3.01
98 99 3.758755 TGACAAAGCTCAGTGATGAGT 57.241 42.857 7.07 0.00 38.16 3.41
99 100 3.622163 GGATGACAAAGCTCAGTGATGAG 59.378 47.826 0.00 0.83 38.86 2.90
100 101 3.603532 GGATGACAAAGCTCAGTGATGA 58.396 45.455 0.00 0.00 0.00 2.92
101 102 2.681848 GGGATGACAAAGCTCAGTGATG 59.318 50.000 0.00 0.00 0.00 3.07
102 103 2.356535 GGGGATGACAAAGCTCAGTGAT 60.357 50.000 0.00 0.00 0.00 3.06
103 104 1.003580 GGGGATGACAAAGCTCAGTGA 59.996 52.381 0.00 0.00 0.00 3.41
104 105 1.457346 GGGGATGACAAAGCTCAGTG 58.543 55.000 0.00 0.00 0.00 3.66
105 106 0.036010 CGGGGATGACAAAGCTCAGT 60.036 55.000 0.00 0.00 0.00 3.41
106 107 0.745845 CCGGGGATGACAAAGCTCAG 60.746 60.000 0.00 0.00 0.00 3.35
107 108 1.299648 CCGGGGATGACAAAGCTCA 59.700 57.895 0.00 0.00 0.00 4.26
108 109 2.115291 GCCGGGGATGACAAAGCTC 61.115 63.158 2.18 0.00 0.00 4.09
109 110 1.271840 TAGCCGGGGATGACAAAGCT 61.272 55.000 2.18 0.00 0.00 3.74
110 111 1.095807 GTAGCCGGGGATGACAAAGC 61.096 60.000 2.18 0.00 0.00 3.51
111 112 0.251916 TGTAGCCGGGGATGACAAAG 59.748 55.000 2.18 0.00 0.00 2.77
112 113 0.251916 CTGTAGCCGGGGATGACAAA 59.748 55.000 2.18 0.00 0.00 2.83
128 129 3.815401 GTGTTGTCTCTTGTAATGGCTGT 59.185 43.478 0.00 0.00 0.00 4.40
132 133 5.687285 GCAAAAGTGTTGTCTCTTGTAATGG 59.313 40.000 0.00 0.00 0.00 3.16
148 149 1.688197 AGGTTGACCCATGCAAAAGTG 59.312 47.619 0.00 0.00 36.42 3.16
150 151 2.629617 AGAAGGTTGACCCATGCAAAAG 59.370 45.455 0.00 0.00 36.42 2.27
151 152 2.676748 AGAAGGTTGACCCATGCAAAA 58.323 42.857 0.00 0.00 36.42 2.44
152 153 2.380064 AGAAGGTTGACCCATGCAAA 57.620 45.000 0.00 0.00 36.42 3.68
185 186 3.664276 CGTTGGTTGAGCTTGTGAATACG 60.664 47.826 0.00 0.00 0.00 3.06
218 219 1.115930 TCCTTCTAGCCGGATCCAGC 61.116 60.000 12.36 12.36 0.00 4.85
220 221 1.107538 CGTCCTTCTAGCCGGATCCA 61.108 60.000 13.41 0.00 0.00 3.41
230 231 1.679977 CACCCCGGTCGTCCTTCTA 60.680 63.158 0.00 0.00 0.00 2.10
232 233 4.754667 GCACCCCGGTCGTCCTTC 62.755 72.222 0.00 0.00 0.00 3.46
262 263 4.778143 AGCAAACCCTAGCCGCGG 62.778 66.667 24.05 24.05 0.00 6.46
263 264 3.195698 GAGCAAACCCTAGCCGCG 61.196 66.667 0.00 0.00 0.00 6.46
264 265 2.824489 GGAGCAAACCCTAGCCGC 60.824 66.667 0.00 0.00 0.00 6.53
265 266 2.124695 GGGAGCAAACCCTAGCCG 60.125 66.667 6.42 0.00 45.90 5.52
289 340 2.069465 CTCTCATGTCGCTCCCGAGG 62.069 65.000 0.00 0.00 45.38 4.63
291 342 2.775856 GCTCTCATGTCGCTCCCGA 61.776 63.158 0.00 0.00 42.01 5.14
293 344 1.067250 GAGCTCTCATGTCGCTCCC 59.933 63.158 6.43 1.50 43.22 4.30
294 345 4.728058 GAGCTCTCATGTCGCTCC 57.272 61.111 6.43 5.47 43.22 4.70
297 348 1.133216 TGTGTAGAGCTCTCATGTCGC 59.867 52.381 22.17 13.17 0.00 5.19
299 350 3.194542 ACCTTGTGTAGAGCTCTCATGTC 59.805 47.826 22.17 8.29 0.00 3.06
300 351 3.169099 ACCTTGTGTAGAGCTCTCATGT 58.831 45.455 22.17 9.73 0.00 3.21
303 354 5.067936 GCTATAACCTTGTGTAGAGCTCTCA 59.932 44.000 22.17 15.15 0.00 3.27
304 355 5.300792 AGCTATAACCTTGTGTAGAGCTCTC 59.699 44.000 22.17 12.59 33.46 3.20
309 360 8.184304 AGGAATAGCTATAACCTTGTGTAGAG 57.816 38.462 20.13 0.00 0.00 2.43
311 362 9.694137 GTTAGGAATAGCTATAACCTTGTGTAG 57.306 37.037 26.58 0.00 32.90 2.74
314 365 7.431249 TCGTTAGGAATAGCTATAACCTTGTG 58.569 38.462 26.58 19.06 32.90 3.33
315 366 7.504911 TCTCGTTAGGAATAGCTATAACCTTGT 59.495 37.037 26.58 13.11 32.90 3.16
318 369 9.924010 ATATCTCGTTAGGAATAGCTATAACCT 57.076 33.333 25.46 25.46 35.11 3.50
379 430 9.906660 GAAAAACATGAACATATCCAAACTACA 57.093 29.630 0.00 0.00 0.00 2.74
382 433 8.090214 CCAGAAAAACATGAACATATCCAAACT 58.910 33.333 0.00 0.00 0.00 2.66
383 434 8.087750 TCCAGAAAAACATGAACATATCCAAAC 58.912 33.333 0.00 0.00 0.00 2.93
384 435 8.187913 TCCAGAAAAACATGAACATATCCAAA 57.812 30.769 0.00 0.00 0.00 3.28
385 436 7.773489 TCCAGAAAAACATGAACATATCCAA 57.227 32.000 0.00 0.00 0.00 3.53
386 437 7.959658 ATCCAGAAAAACATGAACATATCCA 57.040 32.000 0.00 0.00 0.00 3.41
420 471 3.439129 TGTCAGAGAATAGCGTCGAAAGA 59.561 43.478 0.00 0.00 38.16 2.52
421 472 3.759418 TGTCAGAGAATAGCGTCGAAAG 58.241 45.455 0.00 0.00 0.00 2.62
422 473 3.842732 TGTCAGAGAATAGCGTCGAAA 57.157 42.857 0.00 0.00 0.00 3.46
423 474 3.190744 ACTTGTCAGAGAATAGCGTCGAA 59.809 43.478 0.00 0.00 0.00 3.71
424 475 2.747989 ACTTGTCAGAGAATAGCGTCGA 59.252 45.455 0.00 0.00 0.00 4.20
425 476 3.138205 ACTTGTCAGAGAATAGCGTCG 57.862 47.619 0.00 0.00 0.00 5.12
426 477 6.853872 CACTATACTTGTCAGAGAATAGCGTC 59.146 42.308 0.00 0.00 0.00 5.19
427 478 6.730175 CACTATACTTGTCAGAGAATAGCGT 58.270 40.000 0.00 0.00 0.00 5.07
428 479 5.627367 GCACTATACTTGTCAGAGAATAGCG 59.373 44.000 0.00 0.00 0.00 4.26
429 480 5.627367 CGCACTATACTTGTCAGAGAATAGC 59.373 44.000 0.00 0.00 0.00 2.97
430 481 6.634837 CACGCACTATACTTGTCAGAGAATAG 59.365 42.308 0.00 0.00 0.00 1.73
431 482 6.495706 CACGCACTATACTTGTCAGAGAATA 58.504 40.000 0.00 0.00 0.00 1.75
432 483 5.344066 CACGCACTATACTTGTCAGAGAAT 58.656 41.667 0.00 0.00 0.00 2.40
433 484 4.733850 CACGCACTATACTTGTCAGAGAA 58.266 43.478 0.00 0.00 0.00 2.87
434 485 3.427638 GCACGCACTATACTTGTCAGAGA 60.428 47.826 0.00 0.00 0.00 3.10
435 486 2.854777 GCACGCACTATACTTGTCAGAG 59.145 50.000 0.00 0.00 0.00 3.35
436 487 2.731027 CGCACGCACTATACTTGTCAGA 60.731 50.000 0.00 0.00 0.00 3.27
437 488 1.583856 CGCACGCACTATACTTGTCAG 59.416 52.381 0.00 0.00 0.00 3.51
438 489 1.068125 ACGCACGCACTATACTTGTCA 60.068 47.619 0.00 0.00 0.00 3.58
439 490 1.582502 GACGCACGCACTATACTTGTC 59.417 52.381 0.00 0.00 0.00 3.18
440 491 1.068125 TGACGCACGCACTATACTTGT 60.068 47.619 0.00 0.00 0.00 3.16
441 492 1.624487 TGACGCACGCACTATACTTG 58.376 50.000 0.00 0.00 0.00 3.16
442 493 1.990563 GTTGACGCACGCACTATACTT 59.009 47.619 0.00 0.00 0.00 2.24
443 494 1.201647 AGTTGACGCACGCACTATACT 59.798 47.619 0.00 0.00 0.00 2.12
444 495 1.625616 AGTTGACGCACGCACTATAC 58.374 50.000 0.00 0.00 0.00 1.47
445 496 2.162008 TGTAGTTGACGCACGCACTATA 59.838 45.455 0.00 0.00 0.00 1.31
446 497 1.068125 TGTAGTTGACGCACGCACTAT 60.068 47.619 0.00 0.00 0.00 2.12
447 498 0.311477 TGTAGTTGACGCACGCACTA 59.689 50.000 0.00 0.00 0.00 2.74
448 499 0.319555 ATGTAGTTGACGCACGCACT 60.320 50.000 0.00 0.00 0.00 4.40
449 500 1.342555 TATGTAGTTGACGCACGCAC 58.657 50.000 0.00 0.00 0.00 5.34
450 501 1.722464 GTTATGTAGTTGACGCACGCA 59.278 47.619 0.00 0.00 0.00 5.24
451 502 1.266211 CGTTATGTAGTTGACGCACGC 60.266 52.381 0.00 0.00 0.00 5.34
452 503 1.980844 ACGTTATGTAGTTGACGCACG 59.019 47.619 0.00 0.00 38.97 5.34
453 504 4.138817 CAAACGTTATGTAGTTGACGCAC 58.861 43.478 0.00 0.00 38.97 5.34
454 505 3.803231 ACAAACGTTATGTAGTTGACGCA 59.197 39.130 0.00 0.00 38.97 5.24
455 506 4.379374 ACAAACGTTATGTAGTTGACGC 57.621 40.909 0.00 0.00 38.97 5.19
456 507 4.605594 GCAACAAACGTTATGTAGTTGACG 59.394 41.667 22.86 8.04 43.74 4.35
457 508 4.605594 CGCAACAAACGTTATGTAGTTGAC 59.394 41.667 22.86 16.36 43.74 3.18
458 509 4.507021 TCGCAACAAACGTTATGTAGTTGA 59.493 37.500 22.86 13.76 43.74 3.18
459 510 4.605594 GTCGCAACAAACGTTATGTAGTTG 59.394 41.667 18.13 18.13 43.81 3.16
460 511 4.508861 AGTCGCAACAAACGTTATGTAGTT 59.491 37.500 0.00 0.00 31.40 2.24
461 512 4.053295 AGTCGCAACAAACGTTATGTAGT 58.947 39.130 0.00 0.00 0.00 2.73
462 513 4.640805 AGTCGCAACAAACGTTATGTAG 57.359 40.909 0.00 4.71 0.00 2.74
463 514 4.507021 TGAAGTCGCAACAAACGTTATGTA 59.493 37.500 0.00 0.00 0.00 2.29
464 515 3.310227 TGAAGTCGCAACAAACGTTATGT 59.690 39.130 0.00 5.76 0.00 2.29
465 516 3.657625 GTGAAGTCGCAACAAACGTTATG 59.342 43.478 0.00 5.08 0.00 1.90
466 517 3.303526 GGTGAAGTCGCAACAAACGTTAT 60.304 43.478 0.00 0.00 0.00 1.89
467 518 2.030701 GGTGAAGTCGCAACAAACGTTA 59.969 45.455 0.00 0.00 0.00 3.18
468 519 1.202098 GGTGAAGTCGCAACAAACGTT 60.202 47.619 0.00 0.00 0.00 3.99
469 520 0.375803 GGTGAAGTCGCAACAAACGT 59.624 50.000 0.00 0.00 0.00 3.99
470 521 0.653323 CGGTGAAGTCGCAACAAACG 60.653 55.000 0.00 0.00 0.00 3.60
471 522 0.653636 TCGGTGAAGTCGCAACAAAC 59.346 50.000 0.00 0.00 0.00 2.93
472 523 1.529438 GATCGGTGAAGTCGCAACAAA 59.471 47.619 0.00 0.00 0.00 2.83
473 524 1.144969 GATCGGTGAAGTCGCAACAA 58.855 50.000 0.00 0.00 0.00 2.83
474 525 0.317160 AGATCGGTGAAGTCGCAACA 59.683 50.000 0.00 0.00 0.00 3.33
475 526 1.429463 AAGATCGGTGAAGTCGCAAC 58.571 50.000 0.00 0.00 0.00 4.17
476 527 3.306917 TTAAGATCGGTGAAGTCGCAA 57.693 42.857 0.00 0.00 0.00 4.85
477 528 3.520290 ATTAAGATCGGTGAAGTCGCA 57.480 42.857 0.00 0.00 0.00 5.10
478 529 5.117287 GTGATATTAAGATCGGTGAAGTCGC 59.883 44.000 5.66 0.00 0.00 5.19
479 530 5.629849 GGTGATATTAAGATCGGTGAAGTCG 59.370 44.000 5.66 0.00 0.00 4.18
480 531 5.927115 GGGTGATATTAAGATCGGTGAAGTC 59.073 44.000 5.66 0.00 0.00 3.01
481 532 5.509163 CGGGTGATATTAAGATCGGTGAAGT 60.509 44.000 5.66 0.00 0.00 3.01
482 533 4.923871 CGGGTGATATTAAGATCGGTGAAG 59.076 45.833 5.66 0.00 0.00 3.02
483 534 4.262292 CCGGGTGATATTAAGATCGGTGAA 60.262 45.833 5.66 0.00 0.00 3.18
484 535 3.257375 CCGGGTGATATTAAGATCGGTGA 59.743 47.826 5.66 0.00 0.00 4.02
485 536 3.006537 ACCGGGTGATATTAAGATCGGTG 59.993 47.826 6.32 0.29 46.14 4.94
486 537 3.236896 ACCGGGTGATATTAAGATCGGT 58.763 45.455 6.32 7.54 43.66 4.69
487 538 3.955650 ACCGGGTGATATTAAGATCGG 57.044 47.619 6.32 6.08 41.65 4.18
488 539 7.900782 ATTAAACCGGGTGATATTAAGATCG 57.099 36.000 6.32 0.00 0.00 3.69
496 547 8.759782 CCTCTAAGATATTAAACCGGGTGATAT 58.240 37.037 6.32 7.41 0.00 1.63
497 548 7.731688 ACCTCTAAGATATTAAACCGGGTGATA 59.268 37.037 6.32 1.83 0.00 2.15
498 549 6.557633 ACCTCTAAGATATTAAACCGGGTGAT 59.442 38.462 6.32 0.00 0.00 3.06
499 550 5.901276 ACCTCTAAGATATTAAACCGGGTGA 59.099 40.000 6.32 0.00 0.00 4.02
500 551 5.989777 CACCTCTAAGATATTAAACCGGGTG 59.010 44.000 6.32 0.00 34.43 4.61
501 552 5.664457 ACACCTCTAAGATATTAAACCGGGT 59.336 40.000 6.32 0.00 0.00 5.28
502 553 6.170846 ACACCTCTAAGATATTAAACCGGG 57.829 41.667 6.32 0.00 0.00 5.73
503 554 7.270047 TGAACACCTCTAAGATATTAAACCGG 58.730 38.462 0.00 0.00 0.00 5.28
504 555 8.888579 ATGAACACCTCTAAGATATTAAACCG 57.111 34.615 0.00 0.00 0.00 4.44
508 559 9.670442 ACCCTATGAACACCTCTAAGATATTAA 57.330 33.333 0.00 0.00 0.00 1.40
510 561 9.315363 CTACCCTATGAACACCTCTAAGATATT 57.685 37.037 0.00 0.00 0.00 1.28
511 562 7.397761 GCTACCCTATGAACACCTCTAAGATAT 59.602 40.741 0.00 0.00 0.00 1.63
512 563 6.720288 GCTACCCTATGAACACCTCTAAGATA 59.280 42.308 0.00 0.00 0.00 1.98
513 564 5.540719 GCTACCCTATGAACACCTCTAAGAT 59.459 44.000 0.00 0.00 0.00 2.40
514 565 4.894114 GCTACCCTATGAACACCTCTAAGA 59.106 45.833 0.00 0.00 0.00 2.10
515 566 4.261656 CGCTACCCTATGAACACCTCTAAG 60.262 50.000 0.00 0.00 0.00 2.18
519 570 1.755380 ACGCTACCCTATGAACACCTC 59.245 52.381 0.00 0.00 0.00 3.85
522 573 3.057734 GCATACGCTACCCTATGAACAC 58.942 50.000 0.00 0.00 34.30 3.32
559 615 3.813724 TCCGAGATGTATAGTTGGAGACG 59.186 47.826 0.00 0.00 0.00 4.18
564 620 8.438676 AATTTTCTTCCGAGATGTATAGTTGG 57.561 34.615 0.00 0.00 0.00 3.77
570 626 7.094205 ACTGCAAAATTTTCTTCCGAGATGTAT 60.094 33.333 0.00 0.00 0.00 2.29
574 630 5.474876 AGACTGCAAAATTTTCTTCCGAGAT 59.525 36.000 0.00 0.00 0.00 2.75
579 635 8.919661 CAGATAAAGACTGCAAAATTTTCTTCC 58.080 33.333 0.00 0.00 0.00 3.46
620 676 1.354040 CAGAGCAACTCAACGGCTAG 58.646 55.000 0.00 0.00 38.15 3.42
642 698 3.330267 TGCACAAAAACCACCAAACTTC 58.670 40.909 0.00 0.00 0.00 3.01
649 705 0.530431 CCAGCTGCACAAAAACCACC 60.530 55.000 8.66 0.00 0.00 4.61
654 710 1.741525 GGCTCCAGCTGCACAAAAA 59.258 52.632 8.66 0.00 41.70 1.94
740 796 4.368315 ACAAAAGAAATTGACGAAAGGCC 58.632 39.130 0.00 0.00 39.67 5.19
798 854 9.754382 TCAGTATTTTATCCGGAAATACAGTAC 57.246 33.333 27.46 17.00 45.63 2.73
799 855 9.976511 CTCAGTATTTTATCCGGAAATACAGTA 57.023 33.333 27.46 16.64 45.63 2.74
800 856 8.701895 TCTCAGTATTTTATCCGGAAATACAGT 58.298 33.333 27.46 13.51 45.63 3.55
801 857 8.979574 GTCTCAGTATTTTATCCGGAAATACAG 58.020 37.037 27.46 22.56 45.63 2.74
802 858 8.701895 AGTCTCAGTATTTTATCCGGAAATACA 58.298 33.333 27.46 14.53 45.63 2.29
895 955 6.085555 TCGTAATTTGAACTCTGAGTCTGT 57.914 37.500 11.31 0.00 0.00 3.41
949 1136 2.606519 CGGAGGGTGTTGGAGGGA 60.607 66.667 0.00 0.00 0.00 4.20
1018 1214 3.965539 CTTCCCAGCACTCGCCCAG 62.966 68.421 0.00 0.00 39.83 4.45
1035 1592 3.206150 CGCTAATACCCACTTGCAATCT 58.794 45.455 0.00 0.00 0.00 2.40
1038 1595 2.080693 CACGCTAATACCCACTTGCAA 58.919 47.619 0.00 0.00 0.00 4.08
1631 4087 5.752650 ACCATACAGTACACAGTAGCTAGA 58.247 41.667 0.00 0.00 0.00 2.43
1825 4289 9.352784 CTCTAGCTATTCACATCTTATAGCAAC 57.647 37.037 13.80 0.00 45.75 4.17
1832 4298 7.676683 AAACCCTCTAGCTATTCACATCTTA 57.323 36.000 0.00 0.00 0.00 2.10
1842 4308 6.655425 GTGTTCTTGAAAAACCCTCTAGCTAT 59.345 38.462 0.00 0.00 0.00 2.97
1843 4309 5.995897 GTGTTCTTGAAAAACCCTCTAGCTA 59.004 40.000 0.00 0.00 0.00 3.32
1844 4310 4.822350 GTGTTCTTGAAAAACCCTCTAGCT 59.178 41.667 0.00 0.00 0.00 3.32
1845 4311 4.578928 TGTGTTCTTGAAAAACCCTCTAGC 59.421 41.667 0.00 0.00 0.00 3.42
1846 4312 5.588648 TGTGTGTTCTTGAAAAACCCTCTAG 59.411 40.000 0.00 0.00 0.00 2.43
1847 4313 5.355910 GTGTGTGTTCTTGAAAAACCCTCTA 59.644 40.000 0.00 0.00 0.00 2.43
1848 4314 4.157840 GTGTGTGTTCTTGAAAAACCCTCT 59.842 41.667 0.00 0.00 0.00 3.69
1849 4315 4.157840 AGTGTGTGTTCTTGAAAAACCCTC 59.842 41.667 0.00 0.00 0.00 4.30
1850 4316 4.082245 CAGTGTGTGTTCTTGAAAAACCCT 60.082 41.667 0.00 0.00 0.00 4.34
1851 4317 4.173256 CAGTGTGTGTTCTTGAAAAACCC 58.827 43.478 0.00 0.00 0.00 4.11
1852 4318 4.621034 CACAGTGTGTGTTCTTGAAAAACC 59.379 41.667 15.43 0.00 43.08 3.27
1853 4319 5.745653 CACAGTGTGTGTTCTTGAAAAAC 57.254 39.130 15.43 0.00 43.08 2.43
1869 4335 7.814587 TCATCTTAATACAGAAGACACACAGTG 59.185 37.037 0.00 0.00 35.80 3.66
1870 4336 7.896811 TCATCTTAATACAGAAGACACACAGT 58.103 34.615 0.00 0.00 35.80 3.55
1871 4337 8.763049 TTCATCTTAATACAGAAGACACACAG 57.237 34.615 0.00 0.00 35.80 3.66
1872 4338 9.725019 ATTTCATCTTAATACAGAAGACACACA 57.275 29.630 0.00 0.00 35.80 3.72
1875 4341 9.495754 GCAATTTCATCTTAATACAGAAGACAC 57.504 33.333 0.00 0.00 35.80 3.67
1876 4342 9.453572 AGCAATTTCATCTTAATACAGAAGACA 57.546 29.630 0.00 0.00 35.80 3.41
1889 4355 9.553064 CTTAGTGGTATCTAGCAATTTCATCTT 57.447 33.333 0.00 0.00 35.24 2.40
1890 4356 8.928448 TCTTAGTGGTATCTAGCAATTTCATCT 58.072 33.333 0.00 0.00 35.24 2.90
1891 4357 9.547753 TTCTTAGTGGTATCTAGCAATTTCATC 57.452 33.333 0.00 0.00 35.24 2.92
1896 4362 9.495572 GCTTATTCTTAGTGGTATCTAGCAATT 57.504 33.333 0.00 0.00 35.24 2.32
1897 4363 7.815068 CGCTTATTCTTAGTGGTATCTAGCAAT 59.185 37.037 0.00 0.00 35.24 3.56
1898 4364 7.145985 CGCTTATTCTTAGTGGTATCTAGCAA 58.854 38.462 0.00 0.00 35.24 3.91
1899 4365 6.294564 CCGCTTATTCTTAGTGGTATCTAGCA 60.295 42.308 0.00 0.00 38.26 3.49
1900 4366 6.094061 CCGCTTATTCTTAGTGGTATCTAGC 58.906 44.000 0.00 0.00 38.26 3.42
1921 4387 8.306680 TGATTGTTTATTAGATAGCTAACCGC 57.693 34.615 1.84 0.00 39.29 5.68
1960 4426 9.771534 GACTACCATCTAGCAATTTTATCTTCT 57.228 33.333 0.00 0.00 0.00 2.85
1961 4427 8.994170 GGACTACCATCTAGCAATTTTATCTTC 58.006 37.037 0.00 0.00 35.97 2.87
1962 4428 7.939588 GGGACTACCATCTAGCAATTTTATCTT 59.060 37.037 0.00 0.00 39.85 2.40
1963 4429 7.293535 AGGGACTACCATCTAGCAATTTTATCT 59.706 37.037 0.00 0.00 43.89 1.98
1964 4430 7.454225 AGGGACTACCATCTAGCAATTTTATC 58.546 38.462 0.00 0.00 43.89 1.75
1965 4431 7.394144 AGGGACTACCATCTAGCAATTTTAT 57.606 36.000 0.00 0.00 43.89 1.40
1966 4432 6.824958 AGGGACTACCATCTAGCAATTTTA 57.175 37.500 0.00 0.00 43.89 1.52
1967 4433 5.717119 AGGGACTACCATCTAGCAATTTT 57.283 39.130 0.00 0.00 43.89 1.82
1968 4434 5.685075 CGAAGGGACTACCATCTAGCAATTT 60.685 44.000 0.00 0.00 43.89 1.82
1969 4435 4.202264 CGAAGGGACTACCATCTAGCAATT 60.202 45.833 0.00 0.00 43.89 2.32
1972 4438 2.307768 CGAAGGGACTACCATCTAGCA 58.692 52.381 0.00 0.00 43.89 3.49
1990 4456 9.315525 TCGAAACCATGTTATATTTATGAACGA 57.684 29.630 0.00 0.00 0.00 3.85
2027 4493 9.574516 TGCTCACTCATTTCAGTCTATAGTATA 57.425 33.333 0.00 0.00 0.00 1.47
2028 4494 8.470657 TGCTCACTCATTTCAGTCTATAGTAT 57.529 34.615 0.00 0.00 0.00 2.12
2029 4495 7.881775 TGCTCACTCATTTCAGTCTATAGTA 57.118 36.000 0.00 0.00 0.00 1.82
2034 4500 5.466728 GTGTTTGCTCACTCATTTCAGTCTA 59.533 40.000 0.00 0.00 35.68 2.59
2035 4501 4.274459 GTGTTTGCTCACTCATTTCAGTCT 59.726 41.667 0.00 0.00 35.68 3.24
2036 4502 4.035558 TGTGTTTGCTCACTCATTTCAGTC 59.964 41.667 8.22 0.00 38.90 3.51
2081 4562 9.160496 GTGAACTCTATCTTTCTTGTGAATCAT 57.840 33.333 0.00 0.00 31.56 2.45
2082 4563 8.150296 TGTGAACTCTATCTTTCTTGTGAATCA 58.850 33.333 0.00 0.00 31.56 2.57
2130 4611 7.436320 TCCATATATAGTCCATGCTGCAATA 57.564 36.000 6.36 0.00 0.00 1.90
2134 4615 5.922053 TCATCCATATATAGTCCATGCTGC 58.078 41.667 0.00 0.00 0.00 5.25
2151 4632 9.605275 TGTGTTTGTTTTCATTTATTTCATCCA 57.395 25.926 0.00 0.00 0.00 3.41
2152 4633 9.862585 GTGTGTTTGTTTTCATTTATTTCATCC 57.137 29.630 0.00 0.00 0.00 3.51
2160 4641 9.408069 ACGTTTTAGTGTGTTTGTTTTCATTTA 57.592 25.926 0.00 0.00 0.00 1.40
2163 4644 9.575783 AATACGTTTTAGTGTGTTTGTTTTCAT 57.424 25.926 0.00 0.00 0.00 2.57
2164 4645 8.967552 AATACGTTTTAGTGTGTTTGTTTTCA 57.032 26.923 0.00 0.00 0.00 2.69
2221 4702 8.331931 TCCCTCCAACACTAATATAAGATGTT 57.668 34.615 0.00 0.00 33.86 2.71
2231 4712 3.450904 TGCTACTCCCTCCAACACTAAT 58.549 45.455 0.00 0.00 0.00 1.73
2234 4715 1.958288 ATGCTACTCCCTCCAACACT 58.042 50.000 0.00 0.00 0.00 3.55
2238 4719 4.044308 TGGATAAATGCTACTCCCTCCAA 58.956 43.478 0.00 0.00 0.00 3.53
2239 4720 3.664320 TGGATAAATGCTACTCCCTCCA 58.336 45.455 0.00 0.00 0.00 3.86
2357 4840 8.822805 TGTTCACTCCTCCTAAAATATAAGTGT 58.177 33.333 0.00 0.00 35.53 3.55
2371 4890 5.278364 CCGTGTATACTATGTTCACTCCTCC 60.278 48.000 4.17 0.00 0.00 4.30
2382 4901 4.297299 ACGAACCACCGTGTATACTATG 57.703 45.455 4.17 0.00 41.70 2.23
2406 4925 2.967076 CCCATTCGACGCGGGATG 60.967 66.667 12.47 3.57 43.21 3.51
2441 4960 2.352225 GCACAACCGCATCATAACCAAA 60.352 45.455 0.00 0.00 0.00 3.28
2445 4964 1.094785 AGGCACAACCGCATCATAAC 58.905 50.000 0.00 0.00 46.52 1.89
2446 4965 1.742831 GAAGGCACAACCGCATCATAA 59.257 47.619 0.00 0.00 46.52 1.90
2447 4966 1.378531 GAAGGCACAACCGCATCATA 58.621 50.000 0.00 0.00 46.52 2.15
2448 4967 1.315257 GGAAGGCACAACCGCATCAT 61.315 55.000 0.00 0.00 46.52 2.45
2449 4968 1.971167 GGAAGGCACAACCGCATCA 60.971 57.895 0.00 0.00 46.52 3.07
2450 4969 1.971167 TGGAAGGCACAACCGCATC 60.971 57.895 0.00 0.00 46.52 3.91
2451 4970 2.115052 TGGAAGGCACAACCGCAT 59.885 55.556 0.00 0.00 46.52 4.73
2452 4971 2.904866 GTGGAAGGCACAACCGCA 60.905 61.111 0.00 0.00 46.52 5.69
2453 4972 2.594592 AGTGGAAGGCACAACCGC 60.595 61.111 0.00 0.00 46.52 5.68
2454 4973 1.507141 GACAGTGGAAGGCACAACCG 61.507 60.000 0.00 0.00 46.52 4.44
2455 4974 0.179018 AGACAGTGGAAGGCACAACC 60.179 55.000 0.00 0.00 39.61 3.77
2456 4975 0.947244 CAGACAGTGGAAGGCACAAC 59.053 55.000 0.00 0.00 0.00 3.32
2457 4976 3.402186 CAGACAGTGGAAGGCACAA 57.598 52.632 0.00 0.00 0.00 3.33
2467 4986 0.322648 TGTGCTCCATCCAGACAGTG 59.677 55.000 0.00 0.00 0.00 3.66
2468 4987 1.065636 CATGTGCTCCATCCAGACAGT 60.066 52.381 0.00 0.00 0.00 3.55
2469 4988 1.664873 CATGTGCTCCATCCAGACAG 58.335 55.000 0.00 0.00 0.00 3.51
2470 4989 0.393402 GCATGTGCTCCATCCAGACA 60.393 55.000 0.00 0.00 38.21 3.41
2471 4990 1.099879 GGCATGTGCTCCATCCAGAC 61.100 60.000 4.84 0.00 41.70 3.51
2472 4991 1.225426 GGCATGTGCTCCATCCAGA 59.775 57.895 4.84 0.00 41.70 3.86
2473 4992 1.101635 CAGGCATGTGCTCCATCCAG 61.102 60.000 4.84 0.00 41.70 3.86
2474 4993 1.077285 CAGGCATGTGCTCCATCCA 60.077 57.895 4.84 0.00 41.70 3.41
2475 4994 1.099879 GTCAGGCATGTGCTCCATCC 61.100 60.000 4.84 0.00 41.70 3.51
2476 4995 0.107312 AGTCAGGCATGTGCTCCATC 60.107 55.000 4.84 0.00 41.70 3.51
2477 4996 0.330604 AAGTCAGGCATGTGCTCCAT 59.669 50.000 4.84 0.00 41.70 3.41
2478 4997 0.111061 AAAGTCAGGCATGTGCTCCA 59.889 50.000 4.84 0.00 41.70 3.86
2479 4998 0.524862 CAAAGTCAGGCATGTGCTCC 59.475 55.000 4.84 0.00 41.70 4.70
2480 4999 1.242076 ACAAAGTCAGGCATGTGCTC 58.758 50.000 4.84 0.00 41.70 4.26
2481 5000 2.566833 TACAAAGTCAGGCATGTGCT 57.433 45.000 4.84 0.00 41.70 4.40
2482 5001 3.641437 TTTACAAAGTCAGGCATGTGC 57.359 42.857 0.00 0.00 41.14 4.57
2483 5002 3.922240 GCATTTACAAAGTCAGGCATGTG 59.078 43.478 0.00 0.00 0.00 3.21
2484 5003 3.573538 TGCATTTACAAAGTCAGGCATGT 59.426 39.130 0.00 0.00 0.00 3.21
2485 5004 4.177165 TGCATTTACAAAGTCAGGCATG 57.823 40.909 0.00 0.00 0.00 4.06
2486 5005 5.172934 CAATGCATTTACAAAGTCAGGCAT 58.827 37.500 9.83 0.00 42.01 4.40
2487 5006 4.558178 CAATGCATTTACAAAGTCAGGCA 58.442 39.130 9.83 0.00 0.00 4.75
2488 5007 3.928375 CCAATGCATTTACAAAGTCAGGC 59.072 43.478 9.83 0.00 0.00 4.85
2489 5008 5.138125 ACCAATGCATTTACAAAGTCAGG 57.862 39.130 9.83 6.39 0.00 3.86
2490 5009 6.456447 CAACCAATGCATTTACAAAGTCAG 57.544 37.500 9.83 0.00 0.00 3.51
2514 5033 3.155998 CGCTCAAAATGACTTTGCGTAG 58.844 45.455 0.00 0.00 43.60 3.51
2515 5034 2.095969 CCGCTCAAAATGACTTTGCGTA 60.096 45.455 9.72 0.00 43.60 4.42
2516 5035 1.334960 CCGCTCAAAATGACTTTGCGT 60.335 47.619 9.72 0.00 43.60 5.24
2517 5036 1.330306 CCGCTCAAAATGACTTTGCG 58.670 50.000 0.00 0.00 43.60 4.85
2518 5037 2.422276 ACCGCTCAAAATGACTTTGC 57.578 45.000 0.00 0.00 43.60 3.68
2519 5038 4.566360 ACAAAACCGCTCAAAATGACTTTG 59.434 37.500 0.00 0.00 45.03 2.77
2520 5039 4.754322 ACAAAACCGCTCAAAATGACTTT 58.246 34.783 0.00 0.00 0.00 2.66
2521 5040 4.142271 TGACAAAACCGCTCAAAATGACTT 60.142 37.500 0.00 0.00 0.00 3.01
2522 5041 3.380004 TGACAAAACCGCTCAAAATGACT 59.620 39.130 0.00 0.00 0.00 3.41
2523 5042 3.701241 TGACAAAACCGCTCAAAATGAC 58.299 40.909 0.00 0.00 0.00 3.06
2524 5043 4.202101 ACATGACAAAACCGCTCAAAATGA 60.202 37.500 0.00 0.00 0.00 2.57
2525 5044 4.050553 ACATGACAAAACCGCTCAAAATG 58.949 39.130 0.00 0.00 0.00 2.32
2526 5045 4.320608 ACATGACAAAACCGCTCAAAAT 57.679 36.364 0.00 0.00 0.00 1.82
2527 5046 3.791973 ACATGACAAAACCGCTCAAAA 57.208 38.095 0.00 0.00 0.00 2.44
2528 5047 3.003897 GGTACATGACAAAACCGCTCAAA 59.996 43.478 0.00 0.00 0.00 2.69
2529 5048 2.550606 GGTACATGACAAAACCGCTCAA 59.449 45.455 0.00 0.00 0.00 3.02
2530 5049 2.147958 GGTACATGACAAAACCGCTCA 58.852 47.619 0.00 0.00 0.00 4.26
2531 5050 2.894307 GGTACATGACAAAACCGCTC 57.106 50.000 0.00 0.00 0.00 5.03
2535 5054 3.189080 GGTTACCGGTACATGACAAAACC 59.811 47.826 15.53 13.96 0.00 3.27
2536 5055 3.814283 TGGTTACCGGTACATGACAAAAC 59.186 43.478 15.53 8.21 0.00 2.43
2537 5056 4.082665 TGGTTACCGGTACATGACAAAA 57.917 40.909 15.53 0.00 0.00 2.44
2538 5057 3.766068 TGGTTACCGGTACATGACAAA 57.234 42.857 15.53 0.00 0.00 2.83
2539 5058 3.766068 TTGGTTACCGGTACATGACAA 57.234 42.857 15.53 11.97 0.00 3.18
2540 5059 3.369681 GGATTGGTTACCGGTACATGACA 60.370 47.826 15.53 6.31 0.00 3.58
2541 5060 3.200483 GGATTGGTTACCGGTACATGAC 58.800 50.000 15.53 9.84 0.00 3.06
2542 5061 2.838813 TGGATTGGTTACCGGTACATGA 59.161 45.455 15.53 0.00 0.00 3.07
2543 5062 3.269538 TGGATTGGTTACCGGTACATG 57.730 47.619 15.53 0.00 0.00 3.21
2544 5063 3.456644 TGATGGATTGGTTACCGGTACAT 59.543 43.478 15.53 12.46 0.00 2.29
2545 5064 2.838813 TGATGGATTGGTTACCGGTACA 59.161 45.455 15.53 7.38 0.00 2.90
2546 5065 3.118519 AGTGATGGATTGGTTACCGGTAC 60.119 47.826 15.53 9.65 0.00 3.34
2547 5066 3.109151 AGTGATGGATTGGTTACCGGTA 58.891 45.455 11.16 11.16 0.00 4.02
2548 5067 1.913419 AGTGATGGATTGGTTACCGGT 59.087 47.619 13.98 13.98 0.00 5.28
2549 5068 2.093181 TGAGTGATGGATTGGTTACCGG 60.093 50.000 0.00 0.00 0.00 5.28
2550 5069 3.260475 TGAGTGATGGATTGGTTACCG 57.740 47.619 0.00 0.00 0.00 4.02
2551 5070 3.316308 GCATGAGTGATGGATTGGTTACC 59.684 47.826 0.00 0.00 31.99 2.85
2552 5071 3.947196 TGCATGAGTGATGGATTGGTTAC 59.053 43.478 0.00 0.00 31.99 2.50
2553 5072 4.233632 TGCATGAGTGATGGATTGGTTA 57.766 40.909 0.00 0.00 31.99 2.85
2554 5073 3.090210 TGCATGAGTGATGGATTGGTT 57.910 42.857 0.00 0.00 31.99 3.67
2555 5074 2.812836 TGCATGAGTGATGGATTGGT 57.187 45.000 0.00 0.00 31.99 3.67
2556 5075 2.288213 GCATGCATGAGTGATGGATTGG 60.288 50.000 30.64 0.00 40.01 3.16
2557 5076 2.360801 TGCATGCATGAGTGATGGATTG 59.639 45.455 30.64 0.23 40.01 2.67
2558 5077 2.661718 TGCATGCATGAGTGATGGATT 58.338 42.857 30.64 0.00 40.01 3.01
2559 5078 2.358322 TGCATGCATGAGTGATGGAT 57.642 45.000 30.64 0.00 43.54 3.41
2560 5079 2.358322 ATGCATGCATGAGTGATGGA 57.642 45.000 31.74 4.12 36.74 3.41
2561 5080 2.360801 TGAATGCATGCATGAGTGATGG 59.639 45.455 32.79 1.01 36.68 3.51
2562 5081 3.315191 TCTGAATGCATGCATGAGTGATG 59.685 43.478 32.79 17.75 36.68 3.07
2563 5082 3.551846 TCTGAATGCATGCATGAGTGAT 58.448 40.909 32.79 16.78 36.68 3.06
2564 5083 2.993937 TCTGAATGCATGCATGAGTGA 58.006 42.857 32.79 23.20 36.68 3.41
2565 5084 3.990318 ATCTGAATGCATGCATGAGTG 57.010 42.857 32.79 21.53 36.68 3.51
2566 5085 4.159693 ACAAATCTGAATGCATGCATGAGT 59.840 37.500 32.79 21.49 36.68 3.41
2567 5086 4.504097 CACAAATCTGAATGCATGCATGAG 59.496 41.667 32.79 27.95 36.68 2.90
2568 5087 4.081917 ACACAAATCTGAATGCATGCATGA 60.082 37.500 32.79 24.80 36.68 3.07
2569 5088 4.180817 ACACAAATCTGAATGCATGCATG 58.819 39.130 32.79 22.70 36.68 4.06
2570 5089 4.430007 GACACAAATCTGAATGCATGCAT 58.570 39.130 27.46 27.46 38.46 3.96
2571 5090 3.671164 CGACACAAATCTGAATGCATGCA 60.671 43.478 25.04 25.04 0.00 3.96
2572 5091 2.850060 CGACACAAATCTGAATGCATGC 59.150 45.455 11.82 11.82 0.00 4.06
2573 5092 2.850060 GCGACACAAATCTGAATGCATG 59.150 45.455 0.00 0.00 0.00 4.06
2574 5093 2.751259 AGCGACACAAATCTGAATGCAT 59.249 40.909 0.00 0.00 0.00 3.96
2575 5094 2.095617 CAGCGACACAAATCTGAATGCA 60.096 45.455 0.00 0.00 0.00 3.96
2576 5095 2.095567 ACAGCGACACAAATCTGAATGC 60.096 45.455 0.00 0.00 0.00 3.56
2577 5096 3.187022 TCACAGCGACACAAATCTGAATG 59.813 43.478 0.00 0.00 0.00 2.67
2578 5097 3.402110 TCACAGCGACACAAATCTGAAT 58.598 40.909 0.00 0.00 0.00 2.57
2579 5098 2.802247 CTCACAGCGACACAAATCTGAA 59.198 45.455 0.00 0.00 0.00 3.02
2580 5099 2.224042 ACTCACAGCGACACAAATCTGA 60.224 45.455 0.00 0.00 0.00 3.27
2581 5100 2.138320 ACTCACAGCGACACAAATCTG 58.862 47.619 0.00 0.00 0.00 2.90
2582 5101 2.533266 ACTCACAGCGACACAAATCT 57.467 45.000 0.00 0.00 0.00 2.40
2583 5102 4.627467 AGAATACTCACAGCGACACAAATC 59.373 41.667 0.00 0.00 0.00 2.17
2584 5103 4.569943 AGAATACTCACAGCGACACAAAT 58.430 39.130 0.00 0.00 0.00 2.32
2585 5104 3.990092 AGAATACTCACAGCGACACAAA 58.010 40.909 0.00 0.00 0.00 2.83
2586 5105 3.660501 AGAATACTCACAGCGACACAA 57.339 42.857 0.00 0.00 0.00 3.33
2587 5106 4.983671 ATAGAATACTCACAGCGACACA 57.016 40.909 0.00 0.00 0.00 3.72
2588 5107 5.583495 AGAATAGAATACTCACAGCGACAC 58.417 41.667 0.00 0.00 0.00 3.67
2589 5108 5.357032 TGAGAATAGAATACTCACAGCGACA 59.643 40.000 0.00 0.00 36.04 4.35
2590 5109 5.822278 TGAGAATAGAATACTCACAGCGAC 58.178 41.667 0.00 0.00 36.04 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.