Multiple sequence alignment - TraesCS6D01G105000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G105000 chr6D 100.000 4780 0 0 1 4780 68506920 68511699 0.000000e+00 8828.0
1 TraesCS6D01G105000 chr6D 92.797 236 17 0 1491 1726 68508721 68508956 4.580000e-90 342.0
2 TraesCS6D01G105000 chr6D 95.294 85 4 0 2824 2908 78083163 78083079 8.340000e-28 135.0
3 TraesCS6D01G105000 chr6D 92.308 39 3 0 3936 3974 68660113 68660151 6.680000e-04 56.5
4 TraesCS6D01G105000 chr6B 87.960 2176 173 48 1 2145 143513546 143515663 0.000000e+00 2484.0
5 TraesCS6D01G105000 chr6B 90.430 1348 82 21 1487 2826 143515314 143516622 0.000000e+00 1731.0
6 TraesCS6D01G105000 chr6B 93.699 1095 35 14 2947 4026 143516653 143517728 0.000000e+00 1609.0
7 TraesCS6D01G105000 chr6B 95.480 885 28 6 2994 3866 143605084 143605968 0.000000e+00 1402.0
8 TraesCS6D01G105000 chr6B 88.372 301 27 4 1491 1786 143515630 143515927 5.880000e-94 355.0
9 TraesCS6D01G105000 chr6B 85.241 332 38 9 1803 2125 143515001 143515330 9.920000e-87 331.0
10 TraesCS6D01G105000 chr6A 94.852 1185 37 12 2969 4141 86117973 86119145 0.000000e+00 1829.0
11 TraesCS6D01G105000 chr6A 88.871 1249 62 30 1491 2730 86116592 86117772 0.000000e+00 1465.0
12 TraesCS6D01G105000 chr6A 89.434 795 57 11 1 777 86114529 86115314 0.000000e+00 977.0
13 TraesCS6D01G105000 chr6A 93.553 636 33 6 774 1407 86115619 86116248 0.000000e+00 941.0
14 TraesCS6D01G105000 chr6A 88.099 605 57 11 1463 2055 86116250 86116851 0.000000e+00 704.0
15 TraesCS6D01G105000 chr6A 81.226 522 51 24 4278 4780 86119306 86119799 1.260000e-100 377.0
16 TraesCS6D01G105000 chr6A 87.500 296 29 5 1491 1781 86116884 86117176 7.670000e-88 335.0
17 TraesCS6D01G105000 chr6A 87.075 294 30 6 1802 2089 86116278 86116569 4.610000e-85 326.0
18 TraesCS6D01G105000 chr6A 97.959 49 1 0 4193 4241 86119142 86119190 8.520000e-13 86.1
19 TraesCS6D01G105000 chr7D 90.447 649 60 2 3129 3776 530680286 530680933 0.000000e+00 854.0
20 TraesCS6D01G105000 chr7A 90.293 649 61 2 3129 3776 610933327 610933974 0.000000e+00 848.0
21 TraesCS6D01G105000 chr7B 89.812 638 65 0 3139 3776 569955981 569956618 0.000000e+00 819.0
22 TraesCS6D01G105000 chr7B 88.966 435 48 0 2241 2675 569955189 569955623 5.440000e-149 538.0
23 TraesCS6D01G105000 chr7B 80.755 265 35 11 4532 4780 98733890 98734154 4.880000e-45 193.0
24 TraesCS6D01G105000 chr1A 83.574 554 60 22 1490 2038 482278278 482278805 1.550000e-134 490.0
25 TraesCS6D01G105000 chr1A 83.503 394 42 8 1365 1737 482278423 482278814 3.540000e-91 346.0
26 TraesCS6D01G105000 chr1B 88.571 280 26 4 1773 2048 512158519 512158796 7.670000e-88 335.0
27 TraesCS6D01G105000 chr1B 82.946 387 47 14 1372 1749 512158428 512158804 9.920000e-87 331.0
28 TraesCS6D01G105000 chr1B 82.562 281 33 10 4516 4780 622988270 622987990 2.880000e-57 233.0
29 TraesCS6D01G105000 chr1D 89.179 268 26 3 1773 2038 382205108 382205374 9.920000e-87 331.0
30 TraesCS6D01G105000 chr1D 82.527 372 54 9 1372 1737 382205017 382205383 2.780000e-82 316.0
31 TraesCS6D01G105000 chr1D 83.835 266 30 8 4518 4780 114065828 114066083 1.720000e-59 241.0
32 TraesCS6D01G105000 chr1D 90.196 102 9 1 2814 2915 252473239 252473139 1.080000e-26 132.0
33 TraesCS6D01G105000 chr5D 84.871 271 25 10 4526 4780 377943175 377942905 4.750000e-65 259.0
34 TraesCS6D01G105000 chr5D 81.648 267 33 10 4530 4780 463041467 463041733 1.740000e-49 207.0
35 TraesCS6D01G105000 chr5D 94.444 90 4 1 2819 2908 384413491 384413579 2.320000e-28 137.0
36 TraesCS6D01G105000 chr4B 80.935 278 37 11 4518 4780 654890097 654889821 6.270000e-49 206.0
37 TraesCS6D01G105000 chr3A 81.181 271 33 12 4526 4780 31803675 31803943 8.110000e-48 202.0
38 TraesCS6D01G105000 chr3A 90.476 84 5 2 25 107 34886785 34886866 1.820000e-19 108.0
39 TraesCS6D01G105000 chr5A 81.405 242 29 11 4555 4780 582975215 582975456 2.940000e-42 183.0
40 TraesCS6D01G105000 chr5A 89.623 106 7 4 2813 2915 390157085 390156981 1.080000e-26 132.0
41 TraesCS6D01G105000 chr5B 79.779 272 35 15 4526 4780 447884832 447885100 3.800000e-41 180.0
42 TraesCS6D01G105000 chr3D 92.308 104 6 2 2814 2916 562693523 562693625 3.850000e-31 147.0
43 TraesCS6D01G105000 chr3D 89.623 106 9 2 2806 2910 301972001 301971897 3.000000e-27 134.0
44 TraesCS6D01G105000 chr3D 88.182 110 11 2 2800 2908 55092891 55092783 3.880000e-26 130.0
45 TraesCS6D01G105000 chr4D 94.505 91 5 0 2821 2911 478671849 478671939 1.790000e-29 141.0
46 TraesCS6D01G105000 chr3B 90.816 98 9 0 2823 2920 125897286 125897383 1.080000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G105000 chr6D 68506920 68511699 4779 False 4585.000000 8828 96.3985 1 4780 2 chr6D.!!$F2 4779
1 TraesCS6D01G105000 chr6B 143605084 143605968 884 False 1402.000000 1402 95.4800 2994 3866 1 chr6B.!!$F1 872
2 TraesCS6D01G105000 chr6B 143513546 143517728 4182 False 1302.000000 2484 89.1404 1 4026 5 chr6B.!!$F2 4025
3 TraesCS6D01G105000 chr6A 86114529 86119799 5270 False 782.233333 1829 89.8410 1 4780 9 chr6A.!!$F1 4779
4 TraesCS6D01G105000 chr7D 530680286 530680933 647 False 854.000000 854 90.4470 3129 3776 1 chr7D.!!$F1 647
5 TraesCS6D01G105000 chr7A 610933327 610933974 647 False 848.000000 848 90.2930 3129 3776 1 chr7A.!!$F1 647
6 TraesCS6D01G105000 chr7B 569955189 569956618 1429 False 678.500000 819 89.3890 2241 3776 2 chr7B.!!$F2 1535
7 TraesCS6D01G105000 chr1A 482278278 482278814 536 False 418.000000 490 83.5385 1365 2038 2 chr1A.!!$F1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 518 0.249398 GGGACTGTGCATCCGTTACT 59.751 55.0 0.77 0.0 37.08 2.24 F
1719 2063 0.036105 TGCCATGAGACGCACATCTT 60.036 50.0 0.00 0.0 0.00 2.40 F
1852 2521 0.179097 GACATCCGAGTCCTCTTGCC 60.179 60.0 0.00 0.0 32.36 4.52 F
2145 2820 0.312102 GCTTCCTTTGTGGTGTGAGC 59.688 55.0 0.00 0.0 37.07 4.26 F
2910 3696 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.0 0.00 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2834 0.171903 AACAGGATTTCGCTGCATGC 59.828 50.000 11.82 11.82 38.57 4.06 R
2891 3677 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00 R
2893 3679 0.324091 TCTTGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46 R
3441 4341 1.290324 CAGAGACAGTGTGGTCCCG 59.710 63.158 0.00 0.00 38.59 5.14 R
4681 5688 0.099613 CTCATCACTCGACGAGGTGG 59.900 60.000 27.39 16.55 33.35 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 1.003573 AAGCCTCCGGATCCTCCTT 59.996 57.895 3.57 0.31 33.30 3.36
75 77 1.051556 AAGCCTCCGGATCCTCCTTC 61.052 60.000 3.57 0.00 33.30 3.46
76 78 2.862223 GCCTCCGGATCCTCCTTCG 61.862 68.421 3.57 0.00 33.30 3.79
153 156 1.757682 TTTTTGCTCTCCGTGTGGTT 58.242 45.000 0.00 0.00 36.30 3.67
191 194 4.900154 GATCGATCGATCTGGGCC 57.100 61.111 38.45 20.25 45.42 5.80
192 195 1.153939 GATCGATCGATCTGGGCCG 60.154 63.158 38.45 9.53 45.42 6.13
213 216 0.600782 GGGCGTGTCTGGTTTCGTAA 60.601 55.000 0.00 0.00 0.00 3.18
214 217 0.509929 GGCGTGTCTGGTTTCGTAAC 59.490 55.000 0.00 0.00 0.00 2.50
232 235 0.395862 ACGGATCGATCTGGGTCTGT 60.396 55.000 32.19 13.75 37.50 3.41
245 248 1.534163 GGGTCTGTTTAGTTCCGTTGC 59.466 52.381 0.00 0.00 0.00 4.17
262 265 3.866582 CGGGACTGGATCTGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
263 266 3.866582 GGGACTGGATCTGGGGCG 61.867 72.222 0.00 0.00 0.00 6.13
265 268 3.866582 GACTGGATCTGGGGCGGG 61.867 72.222 0.00 0.00 0.00 6.13
266 269 4.414956 ACTGGATCTGGGGCGGGA 62.415 66.667 0.00 0.00 0.00 5.14
321 333 3.254657 GGGATTGATCTCGAGATTCGTCT 59.745 47.826 27.90 6.52 41.35 4.18
335 347 4.341520 AGATTCGTCTATTTAGGTTCCGCT 59.658 41.667 0.00 0.00 0.00 5.52
387 400 4.116961 TGCGCGATTTAGTTTACTGCTAT 58.883 39.130 12.10 0.00 0.00 2.97
425 440 6.497606 GTGGGTTAGATAGATTTAGGCTAGGT 59.502 42.308 0.00 0.00 0.00 3.08
461 476 8.500773 TGATTTCGTTTTACAAGTCTAATGGTC 58.499 33.333 0.00 0.00 0.00 4.02
491 506 1.843376 CTGTGGACTGGGGGACTGT 60.843 63.158 0.00 0.00 0.00 3.55
492 507 2.116983 CTGTGGACTGGGGGACTGTG 62.117 65.000 0.00 0.00 0.00 3.66
493 508 3.249189 TGGACTGGGGGACTGTGC 61.249 66.667 0.00 0.00 39.32 4.57
494 509 3.249189 GGACTGGGGGACTGTGCA 61.249 66.667 0.77 0.00 38.83 4.57
495 510 2.606587 GGACTGGGGGACTGTGCAT 61.607 63.158 0.77 0.00 38.83 3.96
496 511 1.078143 GACTGGGGGACTGTGCATC 60.078 63.158 0.77 0.00 0.00 3.91
497 512 2.273449 CTGGGGGACTGTGCATCC 59.727 66.667 0.77 2.95 35.28 3.51
498 513 3.687321 CTGGGGGACTGTGCATCCG 62.687 68.421 0.77 0.00 37.08 4.18
499 514 3.717294 GGGGGACTGTGCATCCGT 61.717 66.667 0.77 0.00 37.08 4.69
500 515 2.351276 GGGGACTGTGCATCCGTT 59.649 61.111 0.77 0.00 37.08 4.44
501 516 1.600107 GGGGACTGTGCATCCGTTA 59.400 57.895 0.77 0.00 37.08 3.18
502 517 0.743345 GGGGACTGTGCATCCGTTAC 60.743 60.000 0.77 0.00 37.08 2.50
503 518 0.249398 GGGACTGTGCATCCGTTACT 59.751 55.000 0.77 0.00 37.08 2.24
591 622 6.102663 ACATACATCTTGAGTAGTGTTCTGC 58.897 40.000 0.00 0.00 0.00 4.26
618 653 1.295020 AATGGGGGAAGAATCGTGGA 58.705 50.000 0.00 0.00 0.00 4.02
664 699 4.019321 TGAGTGCTAGGTTCTATTGGCTTT 60.019 41.667 0.00 0.00 0.00 3.51
667 702 3.016736 GCTAGGTTCTATTGGCTTTGCA 58.983 45.455 0.00 0.00 0.00 4.08
742 777 5.567534 CACTGTTTGTGTTGTTAGTTGTGAC 59.432 40.000 0.00 0.00 41.53 3.67
796 1137 5.514169 TGAGAGTAGTGTCTCAGGAATCAT 58.486 41.667 0.00 0.00 46.52 2.45
803 1144 3.944015 GTGTCTCAGGAATCATGGAAAGG 59.056 47.826 0.00 0.00 0.00 3.11
862 1205 2.362736 CATGTGTCCTGCATACTGCTT 58.637 47.619 0.34 0.00 45.31 3.91
864 1207 2.972625 TGTGTCCTGCATACTGCTTAC 58.027 47.619 0.34 0.00 45.31 2.34
873 1217 3.384789 TGCATACTGCTTACCTGACTAGG 59.615 47.826 0.34 0.00 46.43 3.02
889 1233 4.887071 TGACTAGGTTGTCAAGTTTGCATT 59.113 37.500 0.00 0.00 43.08 3.56
918 1262 3.928727 ATGTGAGGTGCAATCTTGTTG 57.071 42.857 0.00 0.00 0.00 3.33
925 1269 5.244402 TGAGGTGCAATCTTGTTGATTTGAT 59.756 36.000 0.00 0.00 43.00 2.57
927 1271 5.929992 AGGTGCAATCTTGTTGATTTGATTG 59.070 36.000 9.39 9.39 43.00 2.67
928 1272 5.121142 GGTGCAATCTTGTTGATTTGATTGG 59.879 40.000 13.90 0.52 43.00 3.16
944 1288 9.541143 GATTTGATTGGTTTCTTTTCCTGTTTA 57.459 29.630 0.00 0.00 0.00 2.01
1040 1384 4.798882 TGTTTGGTACCAGAATTCCTGTT 58.201 39.130 15.65 0.00 41.33 3.16
1042 1386 6.548321 TGTTTGGTACCAGAATTCCTGTTAT 58.452 36.000 15.65 0.00 41.33 1.89
1077 1421 6.902224 AACATGCTCCTGTTTTTGTTTAAC 57.098 33.333 0.00 0.00 35.90 2.01
1265 1609 1.172812 GCAGGAACCAAGGTGACACC 61.173 60.000 17.43 17.43 38.99 4.16
1408 1752 1.436600 CATAGCCCTTGATAGCAGCG 58.563 55.000 0.00 0.00 0.00 5.18
1409 1753 0.321122 ATAGCCCTTGATAGCAGCGC 60.321 55.000 0.00 0.00 0.00 5.92
1410 1754 1.402896 TAGCCCTTGATAGCAGCGCT 61.403 55.000 2.64 2.64 43.41 5.92
1425 1769 1.270550 AGCGCTGCTGCATTTTAACTT 59.729 42.857 10.39 0.00 37.57 2.66
1436 1780 6.347644 GCTGCATTTTAACTTTGGGAAACATC 60.348 38.462 0.00 0.00 0.00 3.06
1437 1781 6.825610 TGCATTTTAACTTTGGGAAACATCT 58.174 32.000 0.00 0.00 0.00 2.90
1438 1782 6.705381 TGCATTTTAACTTTGGGAAACATCTG 59.295 34.615 0.00 0.00 0.00 2.90
1443 1787 7.654022 TTAACTTTGGGAAACATCTGTTCTT 57.346 32.000 0.00 0.00 37.25 2.52
1449 1793 4.202461 TGGGAAACATCTGTTCTTGCTAGT 60.202 41.667 0.00 0.00 37.25 2.57
1457 1801 3.882888 TCTGTTCTTGCTAGTGTTTTGGG 59.117 43.478 0.00 0.00 0.00 4.12
1547 1891 1.936547 CCGAGTCCTCTTGCTTTATGC 59.063 52.381 0.00 0.00 43.25 3.14
1565 1909 1.138247 CGGAGCAAGCTTTCCATGC 59.862 57.895 15.81 8.44 40.34 4.06
1630 1974 2.708759 TGAGGTTTCCCTAGGGTTTCA 58.291 47.619 27.58 19.49 42.86 2.69
1659 2003 5.303589 CCAGATGGCAGTTTCATATTCCATT 59.696 40.000 0.00 0.00 34.74 3.16
1719 2063 0.036105 TGCCATGAGACGCACATCTT 60.036 50.000 0.00 0.00 0.00 2.40
1852 2521 0.179097 GACATCCGAGTCCTCTTGCC 60.179 60.000 0.00 0.00 32.36 4.52
1888 2557 8.393395 CAAACTTTCCATGTTTGTATATTCCG 57.607 34.615 10.16 0.00 45.19 4.30
2039 2710 7.413988 CCATGAGACGCACATCTTTTATTGTTA 60.414 37.037 0.00 0.00 0.00 2.41
2056 2727 9.631452 TTTATTGTTATTCATTTCGAATGCACA 57.369 25.926 0.00 0.00 44.32 4.57
2072 2743 0.593128 CACACTTGTGCCTTGTAGCC 59.407 55.000 0.10 0.00 39.39 3.93
2076 2747 3.081061 CACTTGTGCCTTGTAGCCAATA 58.919 45.455 0.00 0.00 0.00 1.90
2077 2748 3.127548 CACTTGTGCCTTGTAGCCAATAG 59.872 47.826 0.00 0.00 0.00 1.73
2081 2752 3.947196 TGTGCCTTGTAGCCAATAGATTG 59.053 43.478 0.00 0.00 37.52 2.67
2083 2754 2.951642 GCCTTGTAGCCAATAGATTGCA 59.048 45.455 0.00 0.00 36.48 4.08
2084 2755 3.571401 GCCTTGTAGCCAATAGATTGCAT 59.429 43.478 0.00 0.00 36.48 3.96
2085 2756 4.558095 GCCTTGTAGCCAATAGATTGCATG 60.558 45.833 0.00 0.00 36.48 4.06
2086 2757 4.581824 CCTTGTAGCCAATAGATTGCATGT 59.418 41.667 0.00 0.00 36.48 3.21
2087 2758 5.068198 CCTTGTAGCCAATAGATTGCATGTT 59.932 40.000 0.00 0.00 36.48 2.71
2088 2759 6.406177 CCTTGTAGCCAATAGATTGCATGTTT 60.406 38.462 0.00 0.00 36.48 2.83
2089 2760 6.528537 TGTAGCCAATAGATTGCATGTTTT 57.471 33.333 0.00 0.00 36.48 2.43
2090 2761 6.331845 TGTAGCCAATAGATTGCATGTTTTG 58.668 36.000 0.00 0.00 36.48 2.44
2091 2762 5.410355 AGCCAATAGATTGCATGTTTTGT 57.590 34.783 0.00 0.00 36.48 2.83
2092 2763 5.172934 AGCCAATAGATTGCATGTTTTGTG 58.827 37.500 0.00 0.00 36.48 3.33
2093 2764 4.931002 GCCAATAGATTGCATGTTTTGTGT 59.069 37.500 0.00 0.00 36.48 3.72
2094 2765 5.409214 GCCAATAGATTGCATGTTTTGTGTT 59.591 36.000 0.00 0.00 36.48 3.32
2095 2766 6.619018 GCCAATAGATTGCATGTTTTGTGTTG 60.619 38.462 0.00 0.00 36.48 3.33
2096 2767 6.301108 CAATAGATTGCATGTTTTGTGTTGC 58.699 36.000 0.00 0.00 35.67 4.17
2097 2768 3.794717 AGATTGCATGTTTTGTGTTGCA 58.205 36.364 0.00 0.00 42.90 4.08
2098 2769 3.556775 AGATTGCATGTTTTGTGTTGCAC 59.443 39.130 0.00 0.00 44.16 4.57
2099 2770 2.375173 TGCATGTTTTGTGTTGCACA 57.625 40.000 0.00 0.00 43.02 4.57
2100 2771 2.902523 TGCATGTTTTGTGTTGCACAT 58.097 38.095 2.65 0.00 44.16 3.21
2101 2772 3.268330 TGCATGTTTTGTGTTGCACATT 58.732 36.364 2.65 0.00 44.16 2.71
2104 2775 5.526479 TGCATGTTTTGTGTTGCACATTATT 59.474 32.000 2.65 0.00 44.16 1.40
2138 2813 7.174946 TCTCTATAAAAACAGCTTCCTTTGTGG 59.825 37.037 0.00 0.00 37.10 4.17
2145 2820 0.312102 GCTTCCTTTGTGGTGTGAGC 59.688 55.000 0.00 0.00 37.07 4.26
2156 2831 2.358898 GTGGTGTGAGCATGAGTTTTGT 59.641 45.455 0.00 0.00 0.00 2.83
2158 2833 3.446873 TGGTGTGAGCATGAGTTTTGTTT 59.553 39.130 0.00 0.00 0.00 2.83
2159 2834 3.798337 GGTGTGAGCATGAGTTTTGTTTG 59.202 43.478 0.00 0.00 0.00 2.93
2160 2835 3.243643 GTGTGAGCATGAGTTTTGTTTGC 59.756 43.478 0.00 0.00 0.00 3.68
2161 2836 3.119209 TGTGAGCATGAGTTTTGTTTGCA 60.119 39.130 0.00 0.00 35.79 4.08
2162 2837 4.053295 GTGAGCATGAGTTTTGTTTGCAT 58.947 39.130 0.00 0.00 35.79 3.96
2163 2838 4.052608 TGAGCATGAGTTTTGTTTGCATG 58.947 39.130 0.00 0.00 39.35 4.06
2166 2841 4.383774 CATGAGTTTTGTTTGCATGCAG 57.616 40.909 21.50 0.00 31.24 4.41
2167 2842 2.203401 TGAGTTTTGTTTGCATGCAGC 58.797 42.857 21.50 17.64 45.96 5.25
2176 2851 4.704007 GCATGCAGCGAAATCCTG 57.296 55.556 14.21 0.00 0.00 3.86
2180 2855 1.741706 CATGCAGCGAAATCCTGTTCT 59.258 47.619 0.00 0.00 32.93 3.01
2184 2859 3.237628 GCAGCGAAATCCTGTTCTTTTC 58.762 45.455 0.00 0.00 32.93 2.29
2189 2864 4.537015 CGAAATCCTGTTCTTTTCACACC 58.463 43.478 0.00 0.00 31.29 4.16
2193 2868 3.551846 TCCTGTTCTTTTCACACCCTTC 58.448 45.455 0.00 0.00 0.00 3.46
2414 3089 2.409870 GGCATTGGTCCTTGCTCCG 61.410 63.158 14.52 0.00 38.88 4.63
2576 3251 4.848685 ACACCTGGTCGTGTGTTC 57.151 55.556 0.00 0.00 45.19 3.18
2603 3278 4.473520 CGCAGGCAATCCCTCCGT 62.474 66.667 0.00 0.00 44.09 4.69
2645 3320 3.753815 TGTGTTGGATGAAGCTGATGAA 58.246 40.909 0.00 0.00 0.00 2.57
2675 3350 2.635915 ACGTGGTTTCAAGGATCAGGTA 59.364 45.455 0.00 0.00 0.00 3.08
2726 3401 9.173939 GAATTCTGCACATTGTTATTACTATGC 57.826 33.333 6.26 0.00 39.95 3.14
2730 3405 5.007234 TGCACATTGTTATTACTATGCGTCC 59.993 40.000 6.26 0.00 39.95 4.79
2744 3419 7.576750 ACTATGCGTCCGTGTATAATATTTG 57.423 36.000 0.00 0.00 0.00 2.32
2778 3564 8.181573 TGAAGTCAAACTAGTTGCTTAAAACTG 58.818 33.333 9.34 0.25 40.58 3.16
2788 3574 6.867550 AGTTGCTTAAAACTGAAGAAGCTTT 58.132 32.000 0.00 0.00 43.75 3.51
2834 3620 9.268282 ACATATGATATTATTTACTCCCTCCGT 57.732 33.333 10.38 0.00 0.00 4.69
2835 3621 9.751542 CATATGATATTATTTACTCCCTCCGTC 57.248 37.037 0.00 0.00 0.00 4.79
2836 3622 6.600882 TGATATTATTTACTCCCTCCGTCC 57.399 41.667 0.00 0.00 0.00 4.79
2837 3623 5.482878 TGATATTATTTACTCCCTCCGTCCC 59.517 44.000 0.00 0.00 0.00 4.46
2838 3624 2.852714 TATTTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2839 3625 2.191981 ATTTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
2840 3626 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
2841 3627 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2842 3628 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2843 3629 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2844 3630 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2845 3631 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2846 3632 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2847 3633 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2848 3634 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2849 3635 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2850 3636 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2851 3637 4.712337 CCTCCGTCCCATAATATAAGAGCT 59.288 45.833 0.00 0.00 0.00 4.09
2852 3638 5.187967 CCTCCGTCCCATAATATAAGAGCTT 59.812 44.000 0.00 0.00 0.00 3.74
2853 3639 6.295916 CCTCCGTCCCATAATATAAGAGCTTT 60.296 42.308 0.00 0.00 0.00 3.51
2854 3640 7.074653 TCCGTCCCATAATATAAGAGCTTTT 57.925 36.000 0.00 0.00 0.00 2.27
2855 3641 7.514721 TCCGTCCCATAATATAAGAGCTTTTT 58.485 34.615 0.00 0.00 0.00 1.94
2898 3684 6.780706 AAAACGCTCTTATAATATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2899 3685 4.451629 ACGCTCTTATAATATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2900 3686 4.084287 ACGCTCTTATAATATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2901 3687 4.158025 ACGCTCTTATAATATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2902 3688 4.440250 CGCTCTTATAATATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2903 3689 4.141914 GCTCTTATAATATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2904 3690 5.269991 CTCTTATAATATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2905 3691 5.269991 TCTTATAATATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2910 3696 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.000 0.00 0.00 0.00 2.41
2912 3698 0.324091 GGGACGGAGGGAGTACAAGA 60.324 60.000 0.00 0.00 0.00 3.02
2943 3729 7.624360 TTCTATGGTAATAGTTGCAACTTGG 57.376 36.000 35.20 18.08 40.37 3.61
2952 3738 6.655078 ATAGTTGCAACTTGGTTCTTCATT 57.345 33.333 35.20 10.63 40.37 2.57
3011 3887 7.959733 TGTAGAGTATTTGTCTTTTACATGCG 58.040 34.615 0.00 0.00 38.10 4.73
3127 4027 6.128007 GCTTAATTAGCTTGAACTAACAGGCA 60.128 38.462 0.00 0.00 46.77 4.75
3197 4097 1.217916 TTCAGGTTGGGGTGTTCTCA 58.782 50.000 0.00 0.00 0.00 3.27
3200 4100 1.150536 GGTTGGGGTGTTCTCAGCA 59.849 57.895 0.00 0.00 43.00 4.41
3441 4341 0.108138 CACCGACAAGATGAGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
3473 4373 3.362399 CTCTGCCACGCACGGAGAT 62.362 63.158 3.32 0.00 34.24 2.75
3900 4801 3.821421 ATCGTGGTTAAGGATGGTCTC 57.179 47.619 0.00 0.00 32.17 3.36
3901 4802 2.816411 TCGTGGTTAAGGATGGTCTCT 58.184 47.619 0.00 0.00 0.00 3.10
3902 4803 3.170717 TCGTGGTTAAGGATGGTCTCTT 58.829 45.455 0.00 0.00 0.00 2.85
3903 4804 3.056107 TCGTGGTTAAGGATGGTCTCTTG 60.056 47.826 0.00 0.00 0.00 3.02
3904 4805 3.056107 CGTGGTTAAGGATGGTCTCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
3905 4806 4.508662 GTGGTTAAGGATGGTCTCTTGAG 58.491 47.826 0.00 0.00 0.00 3.02
3910 4811 6.490381 GGTTAAGGATGGTCTCTTGAGTTTTT 59.510 38.462 0.00 0.00 0.00 1.94
3993 4894 3.005684 GCTGGGATAGAGTGACTCTCATG 59.994 52.174 19.83 6.06 44.98 3.07
3994 4895 3.570540 TGGGATAGAGTGACTCTCATGG 58.429 50.000 19.83 0.00 44.98 3.66
4031 4932 7.861176 TTCGTTGTGAAGTTATTTTATTGCC 57.139 32.000 0.00 0.00 31.44 4.52
4048 4949 1.002201 TGCCCATCTGTTTTTGCATGG 59.998 47.619 0.00 0.00 36.32 3.66
4056 4957 2.483877 CTGTTTTTGCATGGTCGAGCTA 59.516 45.455 16.64 2.64 0.00 3.32
4088 4989 6.907853 TTCCTTCTATCATGTCTGATCGAT 57.092 37.500 0.00 0.00 41.29 3.59
4142 5043 3.989104 GCGATTGGCTAGCCTAGAA 57.011 52.632 33.07 20.32 39.11 2.10
4143 5044 2.240493 GCGATTGGCTAGCCTAGAAA 57.760 50.000 33.07 19.95 39.11 2.52
4144 5045 2.561569 GCGATTGGCTAGCCTAGAAAA 58.438 47.619 33.07 19.57 39.11 2.29
4145 5046 2.288186 GCGATTGGCTAGCCTAGAAAAC 59.712 50.000 33.07 16.85 39.11 2.43
4146 5047 2.540101 CGATTGGCTAGCCTAGAAAACG 59.460 50.000 33.07 23.62 36.94 3.60
4147 5048 3.532542 GATTGGCTAGCCTAGAAAACGT 58.467 45.455 33.07 10.08 36.94 3.99
4148 5049 4.690122 GATTGGCTAGCCTAGAAAACGTA 58.310 43.478 33.07 7.18 36.94 3.57
4149 5050 4.540359 TTGGCTAGCCTAGAAAACGTAA 57.460 40.909 33.07 13.12 36.94 3.18
4150 5051 4.119442 TGGCTAGCCTAGAAAACGTAAG 57.881 45.455 33.07 0.00 39.56 2.34
4151 5052 3.512724 TGGCTAGCCTAGAAAACGTAAGT 59.487 43.478 33.07 0.00 46.10 2.24
4173 5074 8.839947 AAGTTGCAGTAAAAATTGAAAATTGC 57.160 26.923 0.00 0.00 0.00 3.56
4174 5075 8.212317 AGTTGCAGTAAAAATTGAAAATTGCT 57.788 26.923 0.00 0.00 0.00 3.91
4175 5076 9.323985 AGTTGCAGTAAAAATTGAAAATTGCTA 57.676 25.926 0.00 0.00 0.00 3.49
4176 5077 9.928236 GTTGCAGTAAAAATTGAAAATTGCTAA 57.072 25.926 0.00 0.00 0.00 3.09
4178 5079 9.323985 TGCAGTAAAAATTGAAAATTGCTAAGT 57.676 25.926 0.00 0.00 0.00 2.24
4196 5097 9.555727 TTGCTAAGTTGAAACTATGAAACTAGT 57.444 29.630 0.00 0.00 38.57 2.57
4241 5142 8.637986 TGTGAAATTTAGGCTGTACAGAAAAAT 58.362 29.630 27.08 21.29 0.00 1.82
4244 5145 9.860898 GAAATTTAGGCTGTACAGAAAAATCAT 57.139 29.630 27.08 17.01 0.00 2.45
4247 5148 8.506168 TTTAGGCTGTACAGAAAAATCATAGG 57.494 34.615 27.08 0.00 0.00 2.57
4250 5151 5.066505 GGCTGTACAGAAAAATCATAGGTGG 59.933 44.000 27.08 0.00 0.00 4.61
4251 5152 5.449177 GCTGTACAGAAAAATCATAGGTGGC 60.449 44.000 27.08 1.43 0.00 5.01
4252 5153 5.565509 TGTACAGAAAAATCATAGGTGGCA 58.434 37.500 0.00 0.00 0.00 4.92
4253 5154 5.647658 TGTACAGAAAAATCATAGGTGGCAG 59.352 40.000 0.00 0.00 0.00 4.85
4269 5170 4.166888 AGCCACCGAGCGATGCAT 62.167 61.111 0.00 0.00 38.01 3.96
4270 5171 3.945434 GCCACCGAGCGATGCATG 61.945 66.667 2.46 0.00 0.00 4.06
4271 5172 3.945434 CCACCGAGCGATGCATGC 61.945 66.667 11.82 11.82 0.00 4.06
4274 5175 1.300465 ACCGAGCGATGCATGCTAG 60.300 57.895 20.33 18.46 44.18 3.42
4275 5176 1.006922 CCGAGCGATGCATGCTAGA 60.007 57.895 20.33 0.00 44.18 2.43
4276 5177 0.598419 CCGAGCGATGCATGCTAGAA 60.598 55.000 20.33 0.00 44.18 2.10
4309 5289 1.442886 TTGGCAGGATGGGGGAGTTT 61.443 55.000 0.00 0.00 35.86 2.66
4310 5290 1.380380 GGCAGGATGGGGGAGTTTG 60.380 63.158 0.00 0.00 35.86 2.93
4333 5315 0.529378 GTGATGCTGAAGGGCAAAGG 59.471 55.000 0.00 0.00 45.68 3.11
4340 5322 0.913205 TGAAGGGCAAAGGCGGTATA 59.087 50.000 0.00 0.00 42.47 1.47
4361 5343 4.875578 ATATTGCTGCTGATATGGGGAT 57.124 40.909 0.00 0.00 0.00 3.85
4362 5344 2.574006 TTGCTGCTGATATGGGGATC 57.426 50.000 0.00 0.00 0.00 3.36
4363 5345 1.437397 TGCTGCTGATATGGGGATCA 58.563 50.000 0.00 0.00 34.64 2.92
4365 5347 2.377531 TGCTGCTGATATGGGGATCAAT 59.622 45.455 0.00 0.00 35.44 2.57
4366 5348 3.181426 TGCTGCTGATATGGGGATCAATT 60.181 43.478 0.00 0.00 35.44 2.32
4367 5349 4.043184 TGCTGCTGATATGGGGATCAATTA 59.957 41.667 0.00 0.00 35.44 1.40
4369 5351 5.183530 TGCTGATATGGGGATCAATTAGG 57.816 43.478 0.00 0.00 35.44 2.69
4370 5352 4.018141 TGCTGATATGGGGATCAATTAGGG 60.018 45.833 0.00 0.00 35.44 3.53
4371 5353 4.018050 GCTGATATGGGGATCAATTAGGGT 60.018 45.833 0.00 0.00 35.44 4.34
4372 5354 5.503927 CTGATATGGGGATCAATTAGGGTG 58.496 45.833 0.00 0.00 35.44 4.61
4373 5355 4.292041 TGATATGGGGATCAATTAGGGTGG 59.708 45.833 0.00 0.00 32.84 4.61
4374 5356 0.555769 TGGGGATCAATTAGGGTGGC 59.444 55.000 0.00 0.00 0.00 5.01
4375 5357 0.178961 GGGGATCAATTAGGGTGGCC 60.179 60.000 0.00 0.00 0.00 5.36
4376 5358 0.853530 GGGATCAATTAGGGTGGCCT 59.146 55.000 3.32 0.00 0.00 5.19
4377 5359 1.217942 GGGATCAATTAGGGTGGCCTT 59.782 52.381 3.32 0.00 0.00 4.35
4378 5360 2.587522 GGATCAATTAGGGTGGCCTTC 58.412 52.381 3.32 0.00 0.00 3.46
4379 5361 2.175715 GGATCAATTAGGGTGGCCTTCT 59.824 50.000 3.32 0.89 0.00 2.85
4380 5362 3.481453 GATCAATTAGGGTGGCCTTCTC 58.519 50.000 3.32 0.00 0.00 2.87
4381 5363 2.274542 TCAATTAGGGTGGCCTTCTCA 58.725 47.619 3.32 0.00 0.00 3.27
4382 5364 2.647299 TCAATTAGGGTGGCCTTCTCAA 59.353 45.455 3.32 0.00 0.00 3.02
4383 5365 3.269381 TCAATTAGGGTGGCCTTCTCAAT 59.731 43.478 3.32 0.00 0.00 2.57
4384 5366 4.476846 TCAATTAGGGTGGCCTTCTCAATA 59.523 41.667 3.32 0.00 0.00 1.90
4385 5367 3.926058 TTAGGGTGGCCTTCTCAATAC 57.074 47.619 3.32 0.00 0.00 1.89
4390 5372 3.274288 GGTGGCCTTCTCAATACAAGAG 58.726 50.000 3.32 0.00 34.42 2.85
4417 5399 3.011818 TCACCTTATGCTGCTGTCATTG 58.988 45.455 0.00 0.00 0.00 2.82
4466 5448 6.232581 AGAGTAGCAGCACTTTATTCAGAT 57.767 37.500 0.00 0.00 0.00 2.90
4467 5449 7.353414 AGAGTAGCAGCACTTTATTCAGATA 57.647 36.000 0.00 0.00 0.00 1.98
4468 5450 7.432869 AGAGTAGCAGCACTTTATTCAGATAG 58.567 38.462 0.00 0.00 0.00 2.08
4469 5451 5.988561 AGTAGCAGCACTTTATTCAGATAGC 59.011 40.000 0.00 0.00 0.00 2.97
4470 5452 4.774124 AGCAGCACTTTATTCAGATAGCA 58.226 39.130 0.00 0.00 0.00 3.49
4471 5453 5.188434 AGCAGCACTTTATTCAGATAGCAA 58.812 37.500 0.00 0.00 0.00 3.91
4472 5454 5.065731 AGCAGCACTTTATTCAGATAGCAAC 59.934 40.000 0.00 0.00 0.00 4.17
4473 5455 5.163723 GCAGCACTTTATTCAGATAGCAACA 60.164 40.000 0.00 0.00 0.00 3.33
4474 5456 6.459298 GCAGCACTTTATTCAGATAGCAACAT 60.459 38.462 0.00 0.00 0.00 2.71
4475 5457 7.130917 CAGCACTTTATTCAGATAGCAACATC 58.869 38.462 0.00 0.00 0.00 3.06
4476 5458 6.825213 AGCACTTTATTCAGATAGCAACATCA 59.175 34.615 0.00 0.00 0.00 3.07
4477 5459 7.012138 AGCACTTTATTCAGATAGCAACATCAG 59.988 37.037 0.00 0.00 0.00 2.90
4478 5460 7.201679 GCACTTTATTCAGATAGCAACATCAGT 60.202 37.037 0.00 0.00 0.00 3.41
4479 5461 9.317936 CACTTTATTCAGATAGCAACATCAGTA 57.682 33.333 0.00 0.00 0.00 2.74
4483 5465 7.959689 ATTCAGATAGCAACATCAGTATCAC 57.040 36.000 0.00 0.00 0.00 3.06
4505 5487 7.727181 TCACTGATAAGTTTAGGGATTAGAGC 58.273 38.462 0.00 0.00 0.00 4.09
4506 5488 7.344612 TCACTGATAAGTTTAGGGATTAGAGCA 59.655 37.037 0.00 0.00 0.00 4.26
4507 5489 8.153550 CACTGATAAGTTTAGGGATTAGAGCAT 58.846 37.037 0.00 0.00 0.00 3.79
4508 5490 8.718656 ACTGATAAGTTTAGGGATTAGAGCATT 58.281 33.333 0.00 0.00 0.00 3.56
4510 5492 9.998106 TGATAAGTTTAGGGATTAGAGCATTAC 57.002 33.333 0.00 0.00 0.00 1.89
4511 5493 9.998106 GATAAGTTTAGGGATTAGAGCATTACA 57.002 33.333 0.00 0.00 0.00 2.41
4513 5495 6.292150 AGTTTAGGGATTAGAGCATTACAGC 58.708 40.000 0.00 0.00 0.00 4.40
4514 5496 3.778954 AGGGATTAGAGCATTACAGCC 57.221 47.619 0.00 0.00 34.23 4.85
4524 5506 0.734889 CATTACAGCCGCCCTCAAAG 59.265 55.000 0.00 0.00 0.00 2.77
4540 5534 0.893727 AAAGGCCCGTGGACAATGAC 60.894 55.000 0.00 0.00 29.21 3.06
4545 5539 3.124921 CGTGGACAATGACCGGGC 61.125 66.667 6.32 1.57 0.00 6.13
4548 5542 2.818274 GGACAATGACCGGGCGTC 60.818 66.667 0.09 3.32 42.33 5.19
4552 5546 3.782443 AATGACCGGGCGTCCCTC 61.782 66.667 0.09 0.00 42.67 4.30
4590 5586 5.175127 ACAACCACATCCTGTTTTCAAAAC 58.825 37.500 6.02 6.02 0.00 2.43
4599 5595 8.641541 ACATCCTGTTTTCAAAACATCTGTTAT 58.358 29.630 16.06 2.07 37.25 1.89
4609 5605 4.443978 AACATCTGTTATATGCAGGGCT 57.556 40.909 0.00 0.00 36.32 5.19
4615 5611 6.037786 TCTGTTATATGCAGGGCTATGTAC 57.962 41.667 0.00 0.00 34.89 2.90
4616 5612 5.780282 TCTGTTATATGCAGGGCTATGTACT 59.220 40.000 0.00 0.00 34.89 2.73
4648 5655 1.468520 CGGCTGGACATCGAAAATTGT 59.531 47.619 0.00 0.00 0.00 2.71
4649 5656 2.476185 CGGCTGGACATCGAAAATTGTC 60.476 50.000 8.12 8.12 41.19 3.18
4722 5729 5.774630 AGCTAGTCGACCAGCTTAAATATC 58.225 41.667 29.30 2.36 45.80 1.63
4725 5732 3.057734 GTCGACCAGCTTAAATATCCGG 58.942 50.000 3.51 0.00 0.00 5.14
4726 5733 2.696707 TCGACCAGCTTAAATATCCGGT 59.303 45.455 0.00 0.00 0.00 5.28
4727 5734 3.057734 CGACCAGCTTAAATATCCGGTC 58.942 50.000 0.00 4.43 38.44 4.79
4728 5735 3.057734 GACCAGCTTAAATATCCGGTCG 58.942 50.000 0.00 0.00 32.82 4.79
4729 5736 2.433239 ACCAGCTTAAATATCCGGTCGT 59.567 45.455 0.00 0.00 0.00 4.34
4730 5737 3.057734 CCAGCTTAAATATCCGGTCGTC 58.942 50.000 0.00 0.00 0.00 4.20
4731 5738 3.491964 CCAGCTTAAATATCCGGTCGTCA 60.492 47.826 0.00 0.00 0.00 4.35
4732 5739 4.116961 CAGCTTAAATATCCGGTCGTCAA 58.883 43.478 0.00 0.00 0.00 3.18
4735 5742 5.064325 AGCTTAAATATCCGGTCGTCAAAAC 59.936 40.000 0.00 0.00 0.00 2.43
4760 5768 6.510799 CGAGATAAGTTTCTGACATCATTGCC 60.511 42.308 0.00 0.00 0.00 4.52
4762 5770 6.541641 AGATAAGTTTCTGACATCATTGCCTC 59.458 38.462 0.00 0.00 0.00 4.70
4767 5775 3.349927 TCTGACATCATTGCCTCCTTTG 58.650 45.455 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.283181 CGAGATCGTGTCCCGGATC 59.717 63.158 0.73 0.00 37.11 3.36
13 14 1.280142 CGAGCGAATCCGAGATCGT 59.720 57.895 1.09 0.00 41.01 3.73
93 95 2.745515 GGAGACGTTACCTGAAGCTT 57.254 50.000 0.00 0.00 0.00 3.74
140 142 2.738521 CGCCAACCACACGGAGAG 60.739 66.667 0.00 0.00 35.59 3.20
191 194 4.636435 AAACCAGACACGCCCCCG 62.636 66.667 0.00 0.00 41.14 5.73
192 195 2.671963 GAAACCAGACACGCCCCC 60.672 66.667 0.00 0.00 0.00 5.40
213 216 0.395862 ACAGACCCAGATCGATCCGT 60.396 55.000 21.66 14.96 0.00 4.69
214 217 0.747255 AACAGACCCAGATCGATCCG 59.253 55.000 21.66 11.84 0.00 4.18
245 248 3.866582 GCCCCAGATCCAGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
321 333 1.202486 CGAGGCAGCGGAACCTAAATA 60.202 52.381 0.00 0.00 36.05 1.40
387 400 5.298989 TCTAACCCACAAGACAGCTAAAA 57.701 39.130 0.00 0.00 0.00 1.52
399 414 6.497259 CCTAGCCTAAATCTATCTAACCCACA 59.503 42.308 0.00 0.00 0.00 4.17
425 440 9.179552 CTTGTAAAACGAAATCATCATCAACAA 57.820 29.630 0.00 0.00 0.00 2.83
461 476 3.481903 CCACAGTACGCAGCGCAG 61.482 66.667 16.61 1.31 0.00 5.18
491 506 1.801771 CCAAACGAAGTAACGGATGCA 59.198 47.619 0.00 0.00 45.00 3.96
492 507 1.802365 ACCAAACGAAGTAACGGATGC 59.198 47.619 0.00 0.00 45.00 3.91
493 508 4.092383 CCTAACCAAACGAAGTAACGGATG 59.908 45.833 0.00 0.00 45.00 3.51
494 509 4.248058 CCTAACCAAACGAAGTAACGGAT 58.752 43.478 0.00 0.00 45.00 4.18
495 510 3.069443 ACCTAACCAAACGAAGTAACGGA 59.931 43.478 0.00 0.00 45.00 4.69
496 511 3.392882 ACCTAACCAAACGAAGTAACGG 58.607 45.455 0.00 0.00 45.00 4.44
497 512 4.981674 TGTACCTAACCAAACGAAGTAACG 59.018 41.667 0.00 0.00 45.00 3.18
498 513 5.985530 AGTGTACCTAACCAAACGAAGTAAC 59.014 40.000 0.00 0.00 45.00 2.50
499 514 5.984926 CAGTGTACCTAACCAAACGAAGTAA 59.015 40.000 0.00 0.00 45.00 2.24
500 515 5.068987 ACAGTGTACCTAACCAAACGAAGTA 59.931 40.000 0.00 0.00 45.00 2.24
502 517 4.374399 ACAGTGTACCTAACCAAACGAAG 58.626 43.478 0.00 0.00 0.00 3.79
503 518 4.405116 ACAGTGTACCTAACCAAACGAA 57.595 40.909 0.00 0.00 0.00 3.85
570 601 4.217767 ACGCAGAACACTACTCAAGATGTA 59.782 41.667 0.00 0.00 0.00 2.29
573 604 3.367498 GGACGCAGAACACTACTCAAGAT 60.367 47.826 0.00 0.00 0.00 2.40
667 702 9.647797 CACATGCAATAATTATAGGCATCAAAT 57.352 29.630 24.05 13.45 42.81 2.32
796 1137 2.603075 AGCAAGCCAATACCTTTCCA 57.397 45.000 0.00 0.00 0.00 3.53
889 1233 2.580962 TGCACCTCACATTAAGCAACA 58.419 42.857 0.00 0.00 0.00 3.33
897 1241 3.890756 TCAACAAGATTGCACCTCACATT 59.109 39.130 0.00 0.00 0.00 2.71
898 1242 3.489355 TCAACAAGATTGCACCTCACAT 58.511 40.909 0.00 0.00 0.00 3.21
899 1243 2.929641 TCAACAAGATTGCACCTCACA 58.070 42.857 0.00 0.00 0.00 3.58
900 1244 4.510038 AATCAACAAGATTGCACCTCAC 57.490 40.909 0.00 0.00 45.11 3.51
918 1262 8.437360 AAACAGGAAAAGAAACCAATCAAATC 57.563 30.769 0.00 0.00 0.00 2.17
944 1288 8.596293 ACACAAATCCCAGATGATGTTTTATTT 58.404 29.630 0.00 0.00 0.00 1.40
949 1293 4.463891 GGACACAAATCCCAGATGATGTTT 59.536 41.667 0.00 0.00 31.94 2.83
1040 1384 5.945784 AGGAGCATGTTAACAGAAAGCAATA 59.054 36.000 14.65 0.00 0.00 1.90
1042 1386 4.022935 CAGGAGCATGTTAACAGAAAGCAA 60.023 41.667 14.65 0.00 0.00 3.91
1077 1421 1.672854 CCATTCCTGCCATGGCTGTG 61.673 60.000 35.53 26.48 42.51 3.66
1163 1507 5.008118 GGCTGAGACAATAAATTGGTAGAGC 59.992 44.000 7.56 8.43 41.96 4.09
1265 1609 0.250166 ACGAGGTGAAAAACTCCCCG 60.250 55.000 0.00 0.00 33.10 5.73
1408 1752 2.738314 CCCAAAGTTAAAATGCAGCAGC 59.262 45.455 0.00 0.00 42.57 5.25
1409 1753 4.255833 TCCCAAAGTTAAAATGCAGCAG 57.744 40.909 0.00 0.00 0.00 4.24
1410 1754 4.679373 TTCCCAAAGTTAAAATGCAGCA 57.321 36.364 0.00 0.00 0.00 4.41
1420 1764 6.460953 GCAAGAACAGATGTTTCCCAAAGTTA 60.461 38.462 0.00 0.00 38.56 2.24
1425 1769 3.565307 AGCAAGAACAGATGTTTCCCAA 58.435 40.909 0.00 0.00 38.56 4.12
1436 1780 3.632145 ACCCAAAACACTAGCAAGAACAG 59.368 43.478 0.00 0.00 0.00 3.16
1437 1781 3.626930 ACCCAAAACACTAGCAAGAACA 58.373 40.909 0.00 0.00 0.00 3.18
1438 1782 4.649088 AACCCAAAACACTAGCAAGAAC 57.351 40.909 0.00 0.00 0.00 3.01
1443 1787 3.117813 ACAGGTAACCCAAAACACTAGCA 60.118 43.478 0.00 0.00 37.17 3.49
1449 1793 7.663043 AGATTAAAACAGGTAACCCAAAACA 57.337 32.000 0.00 0.00 37.17 2.83
1457 1801 8.665685 CAGGTCATGTAGATTAAAACAGGTAAC 58.334 37.037 0.00 0.00 0.00 2.50
1534 1878 1.372582 TGCTCCGCATAAAGCAAGAG 58.627 50.000 0.00 0.00 45.09 2.85
1547 1891 1.138247 GCATGGAAAGCTTGCTCCG 59.862 57.895 11.67 1.28 34.14 4.63
1565 1909 7.064134 TGTGACGTTTGCTTAGGAATATACAAG 59.936 37.037 0.00 0.00 0.00 3.16
1647 1991 5.477984 GCTATCAAGGGCAATGGAATATGAA 59.522 40.000 0.00 0.00 0.00 2.57
1659 2003 1.395635 CAATGCTGCTATCAAGGGCA 58.604 50.000 0.00 0.00 37.32 5.36
1719 2063 6.775939 TTGAAATGAAATGCACGCAATAAA 57.224 29.167 0.00 0.00 0.00 1.40
1759 2423 7.243604 ACCAAAACATGTGATCCATTAACAT 57.756 32.000 0.00 0.00 34.92 2.71
1807 2473 6.228258 TCCCATCACACAGAAAGTAGTTTAC 58.772 40.000 0.00 0.00 0.00 2.01
1852 2521 5.010012 ACATGGAAAGTTTGCTCCAAGTAAG 59.990 40.000 8.67 0.00 44.77 2.34
1888 2557 3.354397 CTCACTTTGTGACGTTTGCTTC 58.646 45.455 0.00 0.00 37.67 3.86
2039 2710 4.919168 CACAAGTGTGCATTCGAAATGAAT 59.081 37.500 0.00 0.00 41.42 2.57
2055 2726 3.019964 TGGCTACAAGGCACAAGTG 57.980 52.632 0.00 0.00 46.47 3.16
2069 2740 5.172934 CACAAAACATGCAATCTATTGGCT 58.827 37.500 4.93 0.00 38.21 4.75
2072 2743 6.073711 TGCAACACAAAACATGCAATCTATTG 60.074 34.615 0.00 0.00 45.04 1.90
2076 2747 3.794717 TGCAACACAAAACATGCAATCT 58.205 36.364 0.00 0.00 45.04 2.40
2111 2786 8.233190 CACAAAGGAAGCTGTTTTTATAGAGAG 58.767 37.037 0.00 0.00 0.00 3.20
2115 2790 6.863126 CACCACAAAGGAAGCTGTTTTTATAG 59.137 38.462 0.00 0.00 41.22 1.31
2121 2796 2.166254 CACACCACAAAGGAAGCTGTTT 59.834 45.455 0.00 0.00 41.22 2.83
2126 2801 0.312102 GCTCACACCACAAAGGAAGC 59.688 55.000 0.00 0.00 41.22 3.86
2138 2813 3.243643 GCAAACAAAACTCATGCTCACAC 59.756 43.478 0.00 0.00 34.29 3.82
2145 2820 3.363575 GCTGCATGCAAACAAAACTCATG 60.364 43.478 22.88 6.10 42.31 3.07
2156 2831 0.889994 AGGATTTCGCTGCATGCAAA 59.110 45.000 22.88 13.46 43.06 3.68
2158 2833 0.961857 ACAGGATTTCGCTGCATGCA 60.962 50.000 21.29 21.29 43.06 3.96
2159 2834 0.171903 AACAGGATTTCGCTGCATGC 59.828 50.000 11.82 11.82 38.57 4.06
2160 2835 1.741706 AGAACAGGATTTCGCTGCATG 59.258 47.619 0.00 0.00 0.00 4.06
2161 2836 2.119801 AGAACAGGATTTCGCTGCAT 57.880 45.000 0.00 0.00 0.00 3.96
2162 2837 1.896220 AAGAACAGGATTTCGCTGCA 58.104 45.000 0.00 0.00 0.00 4.41
2163 2838 2.997485 AAAGAACAGGATTTCGCTGC 57.003 45.000 0.00 0.00 0.00 5.25
2164 2839 4.222114 GTGAAAAGAACAGGATTTCGCTG 58.778 43.478 0.00 0.00 39.34 5.18
2165 2840 3.882888 TGTGAAAAGAACAGGATTTCGCT 59.117 39.130 11.00 0.00 41.66 4.93
2166 2841 3.975035 GTGTGAAAAGAACAGGATTTCGC 59.025 43.478 0.00 0.00 41.54 4.70
2167 2842 4.537015 GGTGTGAAAAGAACAGGATTTCG 58.463 43.478 0.00 0.00 36.17 3.46
2168 2843 4.584743 AGGGTGTGAAAAGAACAGGATTTC 59.415 41.667 0.00 0.00 34.45 2.17
2169 2844 4.546674 AGGGTGTGAAAAGAACAGGATTT 58.453 39.130 0.00 0.00 0.00 2.17
2170 2845 4.184649 AGGGTGTGAAAAGAACAGGATT 57.815 40.909 0.00 0.00 0.00 3.01
2171 2846 3.884037 AGGGTGTGAAAAGAACAGGAT 57.116 42.857 0.00 0.00 0.00 3.24
2172 2847 3.053991 TGAAGGGTGTGAAAAGAACAGGA 60.054 43.478 0.00 0.00 0.00 3.86
2173 2848 3.287222 TGAAGGGTGTGAAAAGAACAGG 58.713 45.455 0.00 0.00 0.00 4.00
2174 2849 4.157656 TGTTGAAGGGTGTGAAAAGAACAG 59.842 41.667 0.00 0.00 0.00 3.16
2175 2850 4.082845 TGTTGAAGGGTGTGAAAAGAACA 58.917 39.130 0.00 0.00 0.00 3.18
2176 2851 4.712122 TGTTGAAGGGTGTGAAAAGAAC 57.288 40.909 0.00 0.00 0.00 3.01
2180 2855 8.472007 AACTATATTGTTGAAGGGTGTGAAAA 57.528 30.769 1.55 0.00 0.00 2.29
2184 2859 6.208599 ACCAAACTATATTGTTGAAGGGTGTG 59.791 38.462 15.48 5.01 0.00 3.82
2189 2864 8.511604 AGATGACCAAACTATATTGTTGAAGG 57.488 34.615 3.24 8.56 0.00 3.46
2414 3089 2.280797 TGTGCAAGCTCACGGGTC 60.281 61.111 0.00 0.00 39.73 4.46
2576 3251 3.408755 TGCCTGCGCAACATATCG 58.591 55.556 13.05 0.00 43.74 2.92
2603 3278 6.942005 ACACAAACATCTTGATGTTATCTGGA 59.058 34.615 23.80 0.00 43.29 3.86
2645 3320 3.490761 CCTTGAAACCACGTGAAAGCATT 60.491 43.478 19.30 2.18 0.00 3.56
2726 3401 7.434307 AGTTCTGTCAAATATTATACACGGACG 59.566 37.037 0.00 0.00 0.00 4.79
2744 3419 6.510317 GCAACTAGTTTGACTTCAGTTCTGTC 60.510 42.308 5.07 0.00 37.39 3.51
2759 3545 7.915923 GCTTCTTCAGTTTTAAGCAACTAGTTT 59.084 33.333 5.07 0.00 43.00 2.66
2778 3564 5.045872 ACATGAGCAAACAAAAGCTTCTTC 58.954 37.500 0.00 0.00 42.04 2.87
2788 3574 5.259832 TGTGAATGAACATGAGCAAACAA 57.740 34.783 0.00 0.00 0.00 2.83
2824 3610 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2827 3613 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2828 3614 4.712337 AGCTCTTATATTATGGGACGGAGG 59.288 45.833 0.00 0.00 0.00 4.30
2829 3615 5.923733 AGCTCTTATATTATGGGACGGAG 57.076 43.478 0.00 0.00 0.00 4.63
2831 3617 7.745620 AAAAAGCTCTTATATTATGGGACGG 57.254 36.000 0.00 0.00 0.00 4.79
2874 3660 6.204108 CCGTCCCATATTATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2875 3661 5.699458 CCGTCCCATATTATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2876 3662 5.011329 TCCGTCCCATATTATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2877 3663 4.525487 TCCGTCCCATATTATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2878 3664 4.084287 TCCGTCCCATATTATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2879 3665 4.440250 CCTCCGTCCCATATTATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2880 3666 4.141914 CCCTCCGTCCCATATTATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2881 3667 5.269991 TCCCTCCGTCCCATATTATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2882 3668 5.222484 ACTCCCTCCGTCCCATATTATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2883 3669 5.024118 ACTCCCTCCGTCCCATATTATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2884 3670 5.019657 ACTCCCTCCGTCCCATATTATAA 57.980 43.478 0.00 0.00 0.00 0.98
2885 3671 4.687262 ACTCCCTCCGTCCCATATTATA 57.313 45.455 0.00 0.00 0.00 0.98
2886 3672 3.562108 ACTCCCTCCGTCCCATATTAT 57.438 47.619 0.00 0.00 0.00 1.28
2887 3673 3.140707 TGTACTCCCTCCGTCCCATATTA 59.859 47.826 0.00 0.00 0.00 0.98
2888 3674 2.090943 TGTACTCCCTCCGTCCCATATT 60.091 50.000 0.00 0.00 0.00 1.28
2889 3675 1.502039 TGTACTCCCTCCGTCCCATAT 59.498 52.381 0.00 0.00 0.00 1.78
2890 3676 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2891 3677 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
2892 3678 0.613853 CTTGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2893 3679 0.324091 TCTTGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
2894 3680 1.777941 ATCTTGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2895 3681 3.553904 ACTATCTTGTACTCCCTCCGTC 58.446 50.000 0.00 0.00 0.00 4.79
2896 3682 3.666345 ACTATCTTGTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
2897 3683 6.490721 AGAAATACTATCTTGTACTCCCTCCG 59.509 42.308 0.00 0.00 0.00 4.63
2898 3684 7.842887 AGAAATACTATCTTGTACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
2900 3686 9.315363 CCATAGAAATACTATCTTGTACTCCCT 57.685 37.037 0.00 0.00 39.50 4.20
2901 3687 9.091220 ACCATAGAAATACTATCTTGTACTCCC 57.909 37.037 0.00 0.00 39.50 4.30
3299 4199 6.600822 CCTTCTCCACATTGACATAGAATTGT 59.399 38.462 0.00 0.00 0.00 2.71
3441 4341 1.290324 CAGAGACAGTGTGGTCCCG 59.710 63.158 0.00 0.00 38.59 5.14
3473 4373 3.245839 TGTCCCTAGTGTTCTGGTCCATA 60.246 47.826 0.00 0.00 0.00 2.74
3623 4523 1.472552 CGACCAATGCGATGGAGGTAA 60.473 52.381 14.00 0.00 43.54 2.85
3910 4811 2.026729 TCCGGACATTGCATAACAGGAA 60.027 45.455 0.00 0.00 0.00 3.36
3911 4812 1.557371 TCCGGACATTGCATAACAGGA 59.443 47.619 0.00 0.00 0.00 3.86
3912 4813 2.036958 TCCGGACATTGCATAACAGG 57.963 50.000 0.00 0.00 0.00 4.00
3913 4814 4.637483 ATTTCCGGACATTGCATAACAG 57.363 40.909 1.83 0.00 0.00 3.16
3993 4894 8.340443 ACTTCACAACGAAAAGTAAAATACTCC 58.660 33.333 0.00 0.00 38.26 3.85
3994 4895 9.712359 AACTTCACAACGAAAAGTAAAATACTC 57.288 29.630 0.00 0.00 38.26 2.59
4031 4932 2.228582 TCGACCATGCAAAAACAGATGG 59.771 45.455 0.00 0.00 41.11 3.51
4048 4949 5.639931 AGAAGGAAAAAGATGTTAGCTCGAC 59.360 40.000 0.00 0.00 0.00 4.20
4056 4957 8.954350 CAGACATGATAGAAGGAAAAAGATGTT 58.046 33.333 0.00 0.00 0.00 2.71
4080 4981 6.742718 ACGCTGTTTCAATTTTAATCGATCAG 59.257 34.615 0.00 0.00 0.00 2.90
4088 4989 6.809196 ACAGAACAACGCTGTTTCAATTTTAA 59.191 30.769 5.55 0.00 45.98 1.52
4129 5030 3.512724 ACTTACGTTTTCTAGGCTAGCCA 59.487 43.478 34.70 19.43 38.92 4.75
4141 5042 8.690680 TCAATTTTTACTGCAACTTACGTTTT 57.309 26.923 0.00 0.00 0.00 2.43
4142 5043 8.690680 TTCAATTTTTACTGCAACTTACGTTT 57.309 26.923 0.00 0.00 0.00 3.60
4143 5044 8.690680 TTTCAATTTTTACTGCAACTTACGTT 57.309 26.923 0.00 0.00 0.00 3.99
4144 5045 8.690680 TTTTCAATTTTTACTGCAACTTACGT 57.309 26.923 0.00 0.00 0.00 3.57
4147 5048 9.928236 GCAATTTTCAATTTTTACTGCAACTTA 57.072 25.926 0.00 0.00 0.00 2.24
4148 5049 8.676401 AGCAATTTTCAATTTTTACTGCAACTT 58.324 25.926 0.00 0.00 0.00 2.66
4149 5050 8.212317 AGCAATTTTCAATTTTTACTGCAACT 57.788 26.923 0.00 0.00 0.00 3.16
4150 5051 9.928236 TTAGCAATTTTCAATTTTTACTGCAAC 57.072 25.926 0.00 0.00 0.00 4.17
4152 5053 9.323985 ACTTAGCAATTTTCAATTTTTACTGCA 57.676 25.926 0.00 0.00 0.00 4.41
4170 5071 9.555727 ACTAGTTTCATAGTTTCAACTTAGCAA 57.444 29.630 0.00 0.00 40.37 3.91
4252 5153 4.166888 ATGCATCGCTCGGTGGCT 62.167 61.111 4.63 0.00 0.00 4.75
4253 5154 3.945434 CATGCATCGCTCGGTGGC 61.945 66.667 0.00 0.00 0.00 5.01
4257 5158 0.598419 TTCTAGCATGCATCGCTCGG 60.598 55.000 21.98 16.68 40.96 4.63
4260 5161 1.805869 GGATTCTAGCATGCATCGCT 58.194 50.000 21.98 21.71 43.62 4.93
4261 5162 0.441533 CGGATTCTAGCATGCATCGC 59.558 55.000 21.98 11.67 0.00 4.58
4262 5163 1.073964 CCGGATTCTAGCATGCATCG 58.926 55.000 21.98 11.58 0.00 3.84
4263 5164 1.446907 CCCGGATTCTAGCATGCATC 58.553 55.000 21.98 13.56 0.00 3.91
4265 5166 1.227943 GCCCGGATTCTAGCATGCA 60.228 57.895 21.98 5.01 0.00 3.96
4266 5167 2.320587 CGCCCGGATTCTAGCATGC 61.321 63.158 10.51 10.51 0.00 4.06
4267 5168 0.668706 CTCGCCCGGATTCTAGCATG 60.669 60.000 0.73 0.00 0.00 4.06
4269 5170 2.498941 CCTCGCCCGGATTCTAGCA 61.499 63.158 0.73 0.00 0.00 3.49
4270 5171 2.340443 CCTCGCCCGGATTCTAGC 59.660 66.667 0.73 0.00 0.00 3.42
4271 5172 2.340443 GCCTCGCCCGGATTCTAG 59.660 66.667 0.73 0.00 0.00 2.43
4272 5173 3.602677 CGCCTCGCCCGGATTCTA 61.603 66.667 0.73 0.00 0.00 2.10
4274 5175 4.832608 AACGCCTCGCCCGGATTC 62.833 66.667 0.73 0.00 0.00 2.52
4309 5289 0.391130 GCCCTTCAGCATCACGTACA 60.391 55.000 0.00 0.00 0.00 2.90
4310 5290 0.391130 TGCCCTTCAGCATCACGTAC 60.391 55.000 0.00 0.00 38.00 3.67
4333 5315 5.178252 CCATATCAGCAGCAATATATACCGC 59.822 44.000 0.00 0.00 0.00 5.68
4340 5322 4.228895 TGATCCCCATATCAGCAGCAATAT 59.771 41.667 0.00 0.00 32.18 1.28
4361 5343 2.274542 TGAGAAGGCCACCCTAATTGA 58.725 47.619 5.01 0.00 41.90 2.57
4362 5344 2.806945 TGAGAAGGCCACCCTAATTG 57.193 50.000 5.01 0.00 41.90 2.32
4363 5345 4.229582 TGTATTGAGAAGGCCACCCTAATT 59.770 41.667 5.01 0.00 41.90 1.40
4365 5347 3.186283 TGTATTGAGAAGGCCACCCTAA 58.814 45.455 5.01 0.00 41.90 2.69
4366 5348 2.840511 TGTATTGAGAAGGCCACCCTA 58.159 47.619 5.01 0.00 41.90 3.53
4367 5349 1.668826 TGTATTGAGAAGGCCACCCT 58.331 50.000 5.01 0.00 45.77 4.34
4369 5351 3.274288 CTCTTGTATTGAGAAGGCCACC 58.726 50.000 5.01 0.00 33.68 4.61
4370 5352 3.944087 ACTCTTGTATTGAGAAGGCCAC 58.056 45.455 5.01 0.00 35.66 5.01
4371 5353 4.326826 CAACTCTTGTATTGAGAAGGCCA 58.673 43.478 5.01 0.00 35.66 5.36
4372 5354 3.691609 CCAACTCTTGTATTGAGAAGGCC 59.308 47.826 0.00 0.00 35.66 5.19
4373 5355 4.579869 TCCAACTCTTGTATTGAGAAGGC 58.420 43.478 0.00 0.00 35.66 4.35
4374 5356 6.314896 GTGATCCAACTCTTGTATTGAGAAGG 59.685 42.308 0.00 0.00 35.66 3.46
4375 5357 6.314896 GGTGATCCAACTCTTGTATTGAGAAG 59.685 42.308 0.00 0.00 35.66 2.85
4376 5358 6.013379 AGGTGATCCAACTCTTGTATTGAGAA 60.013 38.462 0.00 0.00 34.48 2.87
4377 5359 5.485353 AGGTGATCCAACTCTTGTATTGAGA 59.515 40.000 0.00 0.00 34.48 3.27
4378 5360 5.738909 AGGTGATCCAACTCTTGTATTGAG 58.261 41.667 0.00 0.00 35.55 3.02
4379 5361 5.762179 AGGTGATCCAACTCTTGTATTGA 57.238 39.130 0.00 0.00 35.89 2.57
4380 5362 7.467811 GCATAAGGTGATCCAACTCTTGTATTG 60.468 40.741 0.00 0.00 35.89 1.90
4381 5363 6.543831 GCATAAGGTGATCCAACTCTTGTATT 59.456 38.462 0.00 0.00 35.89 1.89
4382 5364 6.058183 GCATAAGGTGATCCAACTCTTGTAT 58.942 40.000 0.00 0.00 35.89 2.29
4383 5365 5.189736 AGCATAAGGTGATCCAACTCTTGTA 59.810 40.000 0.00 0.00 35.89 2.41
4384 5366 4.018960 AGCATAAGGTGATCCAACTCTTGT 60.019 41.667 0.00 0.00 35.89 3.16
4385 5367 4.334759 CAGCATAAGGTGATCCAACTCTTG 59.665 45.833 0.00 0.00 45.95 3.02
4390 5372 2.357009 CAGCAGCATAAGGTGATCCAAC 59.643 50.000 0.53 0.00 45.95 3.77
4479 5461 8.371699 GCTCTAATCCCTAAACTTATCAGTGAT 58.628 37.037 11.12 11.12 31.60 3.06
4480 5462 7.344612 TGCTCTAATCCCTAAACTTATCAGTGA 59.655 37.037 0.00 0.00 31.60 3.41
4481 5463 7.500992 TGCTCTAATCCCTAAACTTATCAGTG 58.499 38.462 0.00 0.00 31.60 3.66
4482 5464 7.676683 TGCTCTAATCCCTAAACTTATCAGT 57.323 36.000 0.00 0.00 33.11 3.41
4487 5469 7.931948 GCTGTAATGCTCTAATCCCTAAACTTA 59.068 37.037 0.00 0.00 0.00 2.24
4490 5472 5.470437 GGCTGTAATGCTCTAATCCCTAAAC 59.530 44.000 0.00 0.00 0.00 2.01
4493 5475 3.258372 CGGCTGTAATGCTCTAATCCCTA 59.742 47.826 0.00 0.00 0.00 3.53
4494 5476 2.037772 CGGCTGTAATGCTCTAATCCCT 59.962 50.000 0.00 0.00 0.00 4.20
4495 5477 2.417719 CGGCTGTAATGCTCTAATCCC 58.582 52.381 0.00 0.00 0.00 3.85
4496 5478 1.801178 GCGGCTGTAATGCTCTAATCC 59.199 52.381 0.00 0.00 0.00 3.01
4497 5479 1.801178 GGCGGCTGTAATGCTCTAATC 59.199 52.381 0.00 0.00 0.00 1.75
4498 5480 1.543429 GGGCGGCTGTAATGCTCTAAT 60.543 52.381 9.56 0.00 0.00 1.73
4499 5481 0.179056 GGGCGGCTGTAATGCTCTAA 60.179 55.000 9.56 0.00 0.00 2.10
4500 5482 1.048724 AGGGCGGCTGTAATGCTCTA 61.049 55.000 9.56 0.00 37.76 2.43
4501 5483 2.190578 GGGCGGCTGTAATGCTCT 59.809 61.111 9.56 0.00 0.00 4.09
4502 5484 1.889573 GAGGGCGGCTGTAATGCTC 60.890 63.158 9.56 0.70 0.00 4.26
4503 5485 2.190578 GAGGGCGGCTGTAATGCT 59.809 61.111 9.56 0.00 0.00 3.79
4504 5486 1.312371 TTTGAGGGCGGCTGTAATGC 61.312 55.000 9.56 0.00 0.00 3.56
4505 5487 0.734889 CTTTGAGGGCGGCTGTAATG 59.265 55.000 9.56 0.50 0.00 1.90
4506 5488 0.394352 CCTTTGAGGGCGGCTGTAAT 60.394 55.000 9.56 0.00 0.00 1.89
4507 5489 1.002624 CCTTTGAGGGCGGCTGTAA 60.003 57.895 9.56 0.00 0.00 2.41
4508 5490 2.668632 CCTTTGAGGGCGGCTGTA 59.331 61.111 9.56 0.00 0.00 2.74
4524 5506 2.750237 GGTCATTGTCCACGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
4530 5512 3.599285 GACGCCCGGTCATTGTCCA 62.599 63.158 0.00 0.00 45.36 4.02
4540 5534 8.129426 AATTATAAAATTTGAGGGACGCCCGG 62.129 42.308 8.95 0.00 39.41 5.73
4580 5576 8.863049 CCTGCATATAACAGATGTTTTGAAAAC 58.137 33.333 13.55 13.55 39.31 2.43
4590 5586 5.494724 ACATAGCCCTGCATATAACAGATG 58.505 41.667 7.52 6.07 37.32 2.90
4599 5595 2.632996 GGACAGTACATAGCCCTGCATA 59.367 50.000 0.00 0.00 0.00 3.14
4609 5605 1.133598 CGGCAAGACGGACAGTACATA 59.866 52.381 0.00 0.00 0.00 2.29
4665 5672 5.188434 CGAGGTGGGACTAATACGGATATA 58.812 45.833 0.00 0.00 0.00 0.86
4667 5674 3.181440 ACGAGGTGGGACTAATACGGATA 60.181 47.826 0.00 0.00 0.00 2.59
4681 5688 0.099613 CTCATCACTCGACGAGGTGG 59.900 60.000 27.39 16.55 33.35 4.61
4722 5729 2.267188 TATCTCGTTTTGACGACCGG 57.733 50.000 0.00 0.00 37.20 5.28
4725 5732 6.143438 TCAGAAACTTATCTCGTTTTGACGAC 59.857 38.462 0.00 0.00 37.20 4.34
4726 5733 6.143438 GTCAGAAACTTATCTCGTTTTGACGA 59.857 38.462 1.50 1.50 40.06 4.20
4727 5734 6.074516 TGTCAGAAACTTATCTCGTTTTGACG 60.075 38.462 16.43 0.00 40.39 4.35
4728 5735 7.173863 TGTCAGAAACTTATCTCGTTTTGAC 57.826 36.000 15.61 15.61 39.46 3.18
4729 5736 7.655732 TGATGTCAGAAACTTATCTCGTTTTGA 59.344 33.333 0.00 0.00 34.94 2.69
4730 5737 7.796838 TGATGTCAGAAACTTATCTCGTTTTG 58.203 34.615 0.00 0.00 34.94 2.44
4731 5738 7.962964 TGATGTCAGAAACTTATCTCGTTTT 57.037 32.000 0.00 0.00 34.94 2.43
4732 5739 8.446273 CAATGATGTCAGAAACTTATCTCGTTT 58.554 33.333 0.00 0.00 37.30 3.60
4735 5742 6.417327 GCAATGATGTCAGAAACTTATCTCG 58.583 40.000 0.00 0.00 0.00 4.04
4736 5743 6.541641 AGGCAATGATGTCAGAAACTTATCTC 59.458 38.462 0.00 0.00 31.99 2.75
4744 5752 3.726557 AGGAGGCAATGATGTCAGAAA 57.273 42.857 0.00 0.00 31.99 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.