Multiple sequence alignment - TraesCS6D01G104300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G104300 chr6D 100.000 3409 0 0 1 3409 67914929 67911521 0.000000e+00 6296.0
1 TraesCS6D01G104300 chr6D 92.050 1371 91 10 878 2230 67690732 67689362 0.000000e+00 1912.0
2 TraesCS6D01G104300 chr6D 92.800 375 25 2 2239 2612 67689271 67688898 2.990000e-150 542.0
3 TraesCS6D01G104300 chr6D 85.965 171 4 9 2643 2794 67574022 67573853 7.570000e-37 165.0
4 TraesCS6D01G104300 chr6D 74.744 293 51 19 1168 1450 89228070 89228349 3.600000e-20 110.0
5 TraesCS6D01G104300 chr6B 90.409 1564 99 23 895 2412 142631367 142629809 0.000000e+00 2010.0
6 TraesCS6D01G104300 chr6B 83.182 1100 143 16 1122 2194 142779466 142778382 0.000000e+00 968.0
7 TraesCS6D01G104300 chr6B 93.023 645 43 1 1588 2230 142639663 142639019 0.000000e+00 941.0
8 TraesCS6D01G104300 chr6B 90.698 645 38 13 895 1521 142640302 142639662 0.000000e+00 839.0
9 TraesCS6D01G104300 chr6B 90.308 227 18 4 2388 2612 142629203 142628979 9.250000e-76 294.0
10 TraesCS6D01G104300 chr6B 87.736 212 25 1 2402 2612 142637792 142637581 2.630000e-61 246.0
11 TraesCS6D01G104300 chr6B 72.343 734 157 34 1168 1881 171418210 171418917 4.490000e-44 189.0
12 TraesCS6D01G104300 chr6B 85.492 193 6 11 2611 2783 142628946 142628756 7.510000e-42 182.0
13 TraesCS6D01G104300 chr6B 74.483 290 55 15 1169 1450 171384689 171384967 1.290000e-19 108.0
14 TraesCS6D01G104300 chr3D 96.779 621 14 4 2792 3409 434553891 434553274 0.000000e+00 1031.0
15 TraesCS6D01G104300 chr3D 96.769 619 17 2 2794 3409 29911590 29912208 0.000000e+00 1029.0
16 TraesCS6D01G104300 chr3D 96.607 619 17 4 2795 3409 573762285 573761667 0.000000e+00 1024.0
17 TraesCS6D01G104300 chr2D 96.774 620 16 2 2794 3409 20199253 20199872 0.000000e+00 1031.0
18 TraesCS6D01G104300 chr2D 96.748 615 18 2 2795 3409 586748903 586749515 0.000000e+00 1024.0
19 TraesCS6D01G104300 chr1D 96.774 620 16 4 2792 3409 49500963 49501580 0.000000e+00 1031.0
20 TraesCS6D01G104300 chr7D 96.596 617 19 1 2795 3409 615804370 615804986 0.000000e+00 1022.0
21 TraesCS6D01G104300 chr7D 96.434 617 20 1 2795 3409 106392822 106393438 0.000000e+00 1016.0
22 TraesCS6D01G104300 chr5D 96.440 618 20 2 2793 3409 238078643 238079259 0.000000e+00 1018.0
23 TraesCS6D01G104300 chr6A 94.073 658 39 0 1554 2211 85269888 85269231 0.000000e+00 1000.0
24 TraesCS6D01G104300 chr6A 73.976 903 148 54 1170 2035 117352446 117351594 5.570000e-73 285.0
25 TraesCS6D01G104300 chr2B 89.855 69 7 0 1183 1251 61491334 61491266 4.690000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G104300 chr6D 67911521 67914929 3408 True 6296.000000 6296 100.000000 1 3409 1 chr6D.!!$R2 3408
1 TraesCS6D01G104300 chr6D 67688898 67690732 1834 True 1227.000000 1912 92.425000 878 2612 2 chr6D.!!$R3 1734
2 TraesCS6D01G104300 chr6B 142778382 142779466 1084 True 968.000000 968 83.182000 1122 2194 1 chr6B.!!$R1 1072
3 TraesCS6D01G104300 chr6B 142628756 142631367 2611 True 828.666667 2010 88.736333 895 2783 3 chr6B.!!$R2 1888
4 TraesCS6D01G104300 chr6B 142637581 142640302 2721 True 675.333333 941 90.485667 895 2612 3 chr6B.!!$R3 1717
5 TraesCS6D01G104300 chr3D 434553274 434553891 617 True 1031.000000 1031 96.779000 2792 3409 1 chr3D.!!$R1 617
6 TraesCS6D01G104300 chr3D 29911590 29912208 618 False 1029.000000 1029 96.769000 2794 3409 1 chr3D.!!$F1 615
7 TraesCS6D01G104300 chr3D 573761667 573762285 618 True 1024.000000 1024 96.607000 2795 3409 1 chr3D.!!$R2 614
8 TraesCS6D01G104300 chr2D 20199253 20199872 619 False 1031.000000 1031 96.774000 2794 3409 1 chr2D.!!$F1 615
9 TraesCS6D01G104300 chr2D 586748903 586749515 612 False 1024.000000 1024 96.748000 2795 3409 1 chr2D.!!$F2 614
10 TraesCS6D01G104300 chr1D 49500963 49501580 617 False 1031.000000 1031 96.774000 2792 3409 1 chr1D.!!$F1 617
11 TraesCS6D01G104300 chr7D 615804370 615804986 616 False 1022.000000 1022 96.596000 2795 3409 1 chr7D.!!$F2 614
12 TraesCS6D01G104300 chr7D 106392822 106393438 616 False 1016.000000 1016 96.434000 2795 3409 1 chr7D.!!$F1 614
13 TraesCS6D01G104300 chr5D 238078643 238079259 616 False 1018.000000 1018 96.440000 2793 3409 1 chr5D.!!$F1 616
14 TraesCS6D01G104300 chr6A 85269231 85269888 657 True 1000.000000 1000 94.073000 1554 2211 1 chr6A.!!$R1 657
15 TraesCS6D01G104300 chr6A 117351594 117352446 852 True 285.000000 285 73.976000 1170 2035 1 chr6A.!!$R2 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 873 0.031585 GAAGTTTCCACCGGTTTGGC 59.968 55.0 2.97 0.0 43.94 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2743 4566 0.322322 TCGTATGGGCGGTGAAAACT 59.678 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 9.447157 AAATTGGAAAATGACAAAAGTTTCTGA 57.553 25.926 0.00 0.00 31.94 3.27
115 116 9.447157 AATTGGAAAATGACAAAAGTTTCTGAA 57.553 25.926 0.00 0.00 31.94 3.02
116 117 9.617523 ATTGGAAAATGACAAAAGTTTCTGAAT 57.382 25.926 0.00 0.00 31.94 2.57
117 118 9.447157 TTGGAAAATGACAAAAGTTTCTGAATT 57.553 25.926 0.00 0.00 31.94 2.17
118 119 9.447157 TGGAAAATGACAAAAGTTTCTGAATTT 57.553 25.926 0.00 1.22 31.94 1.82
119 120 9.706846 GGAAAATGACAAAAGTTTCTGAATTTG 57.293 29.630 11.45 11.45 38.42 2.32
122 123 9.434420 AAATGACAAAAGTTTCTGAATTTGTGA 57.566 25.926 19.60 14.27 43.77 3.58
123 124 9.434420 AATGACAAAAGTTTCTGAATTTGTGAA 57.566 25.926 19.60 11.37 43.77 3.18
124 125 8.238481 TGACAAAAGTTTCTGAATTTGTGAAC 57.762 30.769 19.60 10.03 43.77 3.18
125 126 7.869937 TGACAAAAGTTTCTGAATTTGTGAACA 59.130 29.630 19.60 11.82 43.77 3.18
126 127 8.600449 ACAAAAGTTTCTGAATTTGTGAACAA 57.400 26.923 15.85 0.00 42.57 2.83
183 184 8.818141 TTGAACACTTTTCAAAAACACATACA 57.182 26.923 0.00 0.00 35.69 2.29
184 185 8.994429 TGAACACTTTTCAAAAACACATACAT 57.006 26.923 0.00 0.00 0.00 2.29
185 186 9.429359 TGAACACTTTTCAAAAACACATACATT 57.571 25.926 0.00 0.00 0.00 2.71
198 199 9.853177 AAAACACATACATTTTTAAAATCCCCA 57.147 25.926 0.55 0.00 0.00 4.96
199 200 9.853177 AAACACATACATTTTTAAAATCCCCAA 57.147 25.926 0.55 0.00 0.00 4.12
200 201 9.853177 AACACATACATTTTTAAAATCCCCAAA 57.147 25.926 0.55 0.00 0.00 3.28
206 207 8.759481 ACATTTTTAAAATCCCCAAATGTGTT 57.241 26.923 10.04 0.00 43.26 3.32
207 208 9.194972 ACATTTTTAAAATCCCCAAATGTGTTT 57.805 25.926 10.04 0.00 43.26 2.83
210 211 8.807948 TTTTAAAATCCCCAAATGTGTTTTGA 57.192 26.923 0.00 0.00 46.36 2.69
211 212 8.807948 TTTAAAATCCCCAAATGTGTTTTGAA 57.192 26.923 0.00 0.00 46.36 2.69
212 213 8.986929 TTAAAATCCCCAAATGTGTTTTGAAT 57.013 26.923 0.00 0.00 46.36 2.57
213 214 7.894753 AAAATCCCCAAATGTGTTTTGAATT 57.105 28.000 0.00 0.00 46.36 2.17
214 215 7.509141 AAATCCCCAAATGTGTTTTGAATTC 57.491 32.000 0.00 0.00 46.36 2.17
215 216 5.620738 TCCCCAAATGTGTTTTGAATTCA 57.379 34.783 3.38 3.38 46.36 2.57
216 217 6.185114 TCCCCAAATGTGTTTTGAATTCAT 57.815 33.333 9.40 0.00 46.36 2.57
217 218 5.996513 TCCCCAAATGTGTTTTGAATTCATG 59.003 36.000 9.40 0.96 46.36 3.07
218 219 5.996513 CCCCAAATGTGTTTTGAATTCATGA 59.003 36.000 9.40 0.00 46.36 3.07
219 220 6.485984 CCCCAAATGTGTTTTGAATTCATGAA 59.514 34.615 11.26 11.26 46.36 2.57
220 221 7.354257 CCCAAATGTGTTTTGAATTCATGAAC 58.646 34.615 11.07 20.16 46.36 3.18
221 222 7.012138 CCCAAATGTGTTTTGAATTCATGAACA 59.988 33.333 23.40 23.40 46.36 3.18
222 223 8.396390 CCAAATGTGTTTTGAATTCATGAACAA 58.604 29.630 26.44 20.00 46.36 2.83
223 224 9.770503 CAAATGTGTTTTGAATTCATGAACAAA 57.229 25.926 26.44 23.80 46.36 2.83
249 250 8.574196 AAAATTGAAAACGGTAACATTCTCTG 57.426 30.769 0.00 0.00 0.00 3.35
250 251 7.504924 AATTGAAAACGGTAACATTCTCTGA 57.495 32.000 0.00 0.00 0.00 3.27
251 252 6.928979 TTGAAAACGGTAACATTCTCTGAA 57.071 33.333 0.00 0.00 0.00 3.02
252 253 6.928979 TGAAAACGGTAACATTCTCTGAAA 57.071 33.333 0.00 0.00 0.00 2.69
253 254 7.323049 TGAAAACGGTAACATTCTCTGAAAA 57.677 32.000 0.00 0.00 0.00 2.29
254 255 7.936584 TGAAAACGGTAACATTCTCTGAAAAT 58.063 30.769 0.00 0.00 0.00 1.82
255 256 8.410141 TGAAAACGGTAACATTCTCTGAAAATT 58.590 29.630 0.00 0.00 0.00 1.82
256 257 8.797266 AAAACGGTAACATTCTCTGAAAATTC 57.203 30.769 0.00 0.00 0.00 2.17
257 258 6.496338 ACGGTAACATTCTCTGAAAATTCC 57.504 37.500 0.00 0.00 0.00 3.01
258 259 5.121768 ACGGTAACATTCTCTGAAAATTCCG 59.878 40.000 0.00 0.00 38.04 4.30
259 260 5.350365 CGGTAACATTCTCTGAAAATTCCGA 59.650 40.000 0.00 0.00 34.76 4.55
260 261 6.037172 CGGTAACATTCTCTGAAAATTCCGAT 59.963 38.462 0.00 0.00 34.76 4.18
261 262 7.414098 CGGTAACATTCTCTGAAAATTCCGATT 60.414 37.037 0.00 0.00 34.76 3.34
262 263 7.910683 GGTAACATTCTCTGAAAATTCCGATTC 59.089 37.037 0.00 0.00 0.00 2.52
263 264 7.693969 AACATTCTCTGAAAATTCCGATTCT 57.306 32.000 0.00 0.00 0.00 2.40
264 265 7.693969 ACATTCTCTGAAAATTCCGATTCTT 57.306 32.000 0.00 0.00 0.00 2.52
265 266 8.115490 ACATTCTCTGAAAATTCCGATTCTTT 57.885 30.769 0.00 0.00 0.00 2.52
266 267 8.239998 ACATTCTCTGAAAATTCCGATTCTTTC 58.760 33.333 0.00 0.00 0.00 2.62
267 268 6.743575 TCTCTGAAAATTCCGATTCTTTCC 57.256 37.500 0.00 0.00 0.00 3.13
268 269 6.476378 TCTCTGAAAATTCCGATTCTTTCCT 58.524 36.000 0.00 0.00 0.00 3.36
269 270 6.372659 TCTCTGAAAATTCCGATTCTTTCCTG 59.627 38.462 0.00 0.00 0.00 3.86
270 271 6.237901 TCTGAAAATTCCGATTCTTTCCTGA 58.762 36.000 0.00 0.00 0.00 3.86
271 272 6.714810 TCTGAAAATTCCGATTCTTTCCTGAA 59.285 34.615 0.00 0.00 0.00 3.02
272 273 7.230510 TCTGAAAATTCCGATTCTTTCCTGAAA 59.769 33.333 0.00 0.00 0.00 2.69
273 274 7.145323 TGAAAATTCCGATTCTTTCCTGAAAC 58.855 34.615 0.00 0.00 0.00 2.78
274 275 6.648879 AAATTCCGATTCTTTCCTGAAACA 57.351 33.333 0.00 0.00 0.00 2.83
275 276 5.629079 ATTCCGATTCTTTCCTGAAACAC 57.371 39.130 0.00 0.00 0.00 3.32
276 277 4.079980 TCCGATTCTTTCCTGAAACACA 57.920 40.909 0.00 0.00 0.00 3.72
277 278 3.813166 TCCGATTCTTTCCTGAAACACAC 59.187 43.478 0.00 0.00 0.00 3.82
278 279 3.815401 CCGATTCTTTCCTGAAACACACT 59.185 43.478 0.00 0.00 0.00 3.55
279 280 4.994852 CCGATTCTTTCCTGAAACACACTA 59.005 41.667 0.00 0.00 0.00 2.74
280 281 5.468746 CCGATTCTTTCCTGAAACACACTAA 59.531 40.000 0.00 0.00 0.00 2.24
281 282 6.363473 CGATTCTTTCCTGAAACACACTAAC 58.637 40.000 0.00 0.00 0.00 2.34
282 283 6.018262 CGATTCTTTCCTGAAACACACTAACA 60.018 38.462 0.00 0.00 0.00 2.41
283 284 7.307989 CGATTCTTTCCTGAAACACACTAACAT 60.308 37.037 0.00 0.00 0.00 2.71
284 285 7.639113 TTCTTTCCTGAAACACACTAACATT 57.361 32.000 0.00 0.00 0.00 2.71
285 286 7.026631 TCTTTCCTGAAACACACTAACATTG 57.973 36.000 0.00 0.00 0.00 2.82
286 287 6.601613 TCTTTCCTGAAACACACTAACATTGT 59.398 34.615 0.00 0.00 0.00 2.71
287 288 6.767524 TTCCTGAAACACACTAACATTGTT 57.232 33.333 7.30 7.30 34.92 2.83
288 289 6.767524 TCCTGAAACACACTAACATTGTTT 57.232 33.333 7.45 0.00 44.24 2.83
289 290 6.559810 TCCTGAAACACACTAACATTGTTTG 58.440 36.000 7.45 8.36 42.19 2.93
290 291 6.375736 TCCTGAAACACACTAACATTGTTTGA 59.624 34.615 16.18 0.00 42.19 2.69
291 292 7.032580 CCTGAAACACACTAACATTGTTTGAA 58.967 34.615 16.18 0.00 42.19 2.69
292 293 7.543868 CCTGAAACACACTAACATTGTTTGAAA 59.456 33.333 16.18 0.00 42.19 2.69
293 294 8.818141 TGAAACACACTAACATTGTTTGAAAA 57.182 26.923 16.18 0.00 42.19 2.29
294 295 9.429359 TGAAACACACTAACATTGTTTGAAAAT 57.571 25.926 16.18 0.00 42.19 1.82
295 296 9.687717 GAAACACACTAACATTGTTTGAAAATG 57.312 29.630 16.18 7.59 42.19 2.32
296 297 8.994429 AACACACTAACATTGTTTGAAAATGA 57.006 26.923 16.18 0.00 38.21 2.57
297 298 8.994429 ACACACTAACATTGTTTGAAAATGAA 57.006 26.923 16.18 0.00 38.21 2.57
298 299 9.598517 ACACACTAACATTGTTTGAAAATGAAT 57.401 25.926 16.18 0.00 38.21 2.57
479 480 9.719355 TTTAATAGTGCTGAGTGTGAATTTAGA 57.281 29.630 0.00 0.00 0.00 2.10
480 481 9.719355 TTAATAGTGCTGAGTGTGAATTTAGAA 57.281 29.630 0.00 0.00 0.00 2.10
481 482 8.621532 AATAGTGCTGAGTGTGAATTTAGAAA 57.378 30.769 0.00 0.00 0.00 2.52
482 483 6.942532 AGTGCTGAGTGTGAATTTAGAAAA 57.057 33.333 0.00 0.00 0.00 2.29
483 484 6.729187 AGTGCTGAGTGTGAATTTAGAAAAC 58.271 36.000 0.00 0.00 0.00 2.43
484 485 6.318648 AGTGCTGAGTGTGAATTTAGAAAACA 59.681 34.615 0.00 0.00 0.00 2.83
485 486 7.013655 AGTGCTGAGTGTGAATTTAGAAAACAT 59.986 33.333 0.00 0.00 0.00 2.71
486 487 7.649306 GTGCTGAGTGTGAATTTAGAAAACATT 59.351 33.333 0.00 0.00 0.00 2.71
487 488 8.845227 TGCTGAGTGTGAATTTAGAAAACATTA 58.155 29.630 0.00 0.00 0.00 1.90
488 489 9.334693 GCTGAGTGTGAATTTAGAAAACATTAG 57.665 33.333 0.00 0.00 0.00 1.73
598 599 6.323203 ACATCATGTGTTGAAGAAAGGAAG 57.677 37.500 0.00 0.00 38.01 3.46
599 600 5.242393 ACATCATGTGTTGAAGAAAGGAAGG 59.758 40.000 0.00 0.00 38.01 3.46
600 601 4.144297 TCATGTGTTGAAGAAAGGAAGGG 58.856 43.478 0.00 0.00 0.00 3.95
601 602 3.943671 TGTGTTGAAGAAAGGAAGGGA 57.056 42.857 0.00 0.00 0.00 4.20
602 603 4.243793 TGTGTTGAAGAAAGGAAGGGAA 57.756 40.909 0.00 0.00 0.00 3.97
603 604 4.605183 TGTGTTGAAGAAAGGAAGGGAAA 58.395 39.130 0.00 0.00 0.00 3.13
604 605 5.020132 TGTGTTGAAGAAAGGAAGGGAAAA 58.980 37.500 0.00 0.00 0.00 2.29
605 606 5.482175 TGTGTTGAAGAAAGGAAGGGAAAAA 59.518 36.000 0.00 0.00 0.00 1.94
606 607 6.156083 TGTGTTGAAGAAAGGAAGGGAAAAAT 59.844 34.615 0.00 0.00 0.00 1.82
607 608 7.343316 TGTGTTGAAGAAAGGAAGGGAAAAATA 59.657 33.333 0.00 0.00 0.00 1.40
608 609 8.201464 GTGTTGAAGAAAGGAAGGGAAAAATAA 58.799 33.333 0.00 0.00 0.00 1.40
609 610 8.763601 TGTTGAAGAAAGGAAGGGAAAAATAAA 58.236 29.630 0.00 0.00 0.00 1.40
610 611 9.261180 GTTGAAGAAAGGAAGGGAAAAATAAAG 57.739 33.333 0.00 0.00 0.00 1.85
611 612 8.776061 TGAAGAAAGGAAGGGAAAAATAAAGA 57.224 30.769 0.00 0.00 0.00 2.52
612 613 9.207868 TGAAGAAAGGAAGGGAAAAATAAAGAA 57.792 29.630 0.00 0.00 0.00 2.52
613 614 9.698309 GAAGAAAGGAAGGGAAAAATAAAGAAG 57.302 33.333 0.00 0.00 0.00 2.85
614 615 9.434275 AAGAAAGGAAGGGAAAAATAAAGAAGA 57.566 29.630 0.00 0.00 0.00 2.87
615 616 9.607333 AGAAAGGAAGGGAAAAATAAAGAAGAT 57.393 29.630 0.00 0.00 0.00 2.40
687 688 5.993748 AAAGAGTCAAAACAGAAAACCCA 57.006 34.783 0.00 0.00 0.00 4.51
688 689 5.993748 AAGAGTCAAAACAGAAAACCCAA 57.006 34.783 0.00 0.00 0.00 4.12
689 690 5.324784 AGAGTCAAAACAGAAAACCCAAC 57.675 39.130 0.00 0.00 0.00 3.77
690 691 4.770010 AGAGTCAAAACAGAAAACCCAACA 59.230 37.500 0.00 0.00 0.00 3.33
691 692 5.245075 AGAGTCAAAACAGAAAACCCAACAA 59.755 36.000 0.00 0.00 0.00 2.83
692 693 5.859495 AGTCAAAACAGAAAACCCAACAAA 58.141 33.333 0.00 0.00 0.00 2.83
693 694 6.292150 AGTCAAAACAGAAAACCCAACAAAA 58.708 32.000 0.00 0.00 0.00 2.44
694 695 6.768381 AGTCAAAACAGAAAACCCAACAAAAA 59.232 30.769 0.00 0.00 0.00 1.94
695 696 7.041440 AGTCAAAACAGAAAACCCAACAAAAAG 60.041 33.333 0.00 0.00 0.00 2.27
696 697 5.621197 AAACAGAAAACCCAACAAAAAGC 57.379 34.783 0.00 0.00 0.00 3.51
697 698 4.278975 ACAGAAAACCCAACAAAAAGCA 57.721 36.364 0.00 0.00 0.00 3.91
698 699 4.646572 ACAGAAAACCCAACAAAAAGCAA 58.353 34.783 0.00 0.00 0.00 3.91
699 700 4.454161 ACAGAAAACCCAACAAAAAGCAAC 59.546 37.500 0.00 0.00 0.00 4.17
700 701 4.453819 CAGAAAACCCAACAAAAAGCAACA 59.546 37.500 0.00 0.00 0.00 3.33
701 702 5.049129 CAGAAAACCCAACAAAAAGCAACAA 60.049 36.000 0.00 0.00 0.00 2.83
702 703 4.757799 AAACCCAACAAAAAGCAACAAC 57.242 36.364 0.00 0.00 0.00 3.32
703 704 3.409026 ACCCAACAAAAAGCAACAACA 57.591 38.095 0.00 0.00 0.00 3.33
704 705 3.333804 ACCCAACAAAAAGCAACAACAG 58.666 40.909 0.00 0.00 0.00 3.16
705 706 3.007398 ACCCAACAAAAAGCAACAACAGA 59.993 39.130 0.00 0.00 0.00 3.41
706 707 3.999663 CCCAACAAAAAGCAACAACAGAA 59.000 39.130 0.00 0.00 0.00 3.02
707 708 4.453819 CCCAACAAAAAGCAACAACAGAAA 59.546 37.500 0.00 0.00 0.00 2.52
708 709 5.049129 CCCAACAAAAAGCAACAACAGAAAA 60.049 36.000 0.00 0.00 0.00 2.29
709 710 6.433766 CCAACAAAAAGCAACAACAGAAAAA 58.566 32.000 0.00 0.00 0.00 1.94
733 734 1.843992 AAAAAGAAACTGCAGCAGCG 58.156 45.000 23.05 0.45 46.23 5.18
734 735 0.595825 AAAAGAAACTGCAGCAGCGC 60.596 50.000 23.05 11.66 46.23 5.92
735 736 1.727511 AAAGAAACTGCAGCAGCGCA 61.728 50.000 23.05 10.77 46.23 6.09
750 751 2.721231 GCAGCCAGCGAAACAACA 59.279 55.556 0.00 0.00 0.00 3.33
751 752 1.370900 GCAGCCAGCGAAACAACAG 60.371 57.895 0.00 0.00 0.00 3.16
752 753 1.370900 CAGCCAGCGAAACAACAGC 60.371 57.895 0.00 0.00 0.00 4.40
753 754 1.823470 AGCCAGCGAAACAACAGCA 60.823 52.632 0.00 0.00 0.00 4.41
754 755 1.370900 GCCAGCGAAACAACAGCAG 60.371 57.895 0.00 0.00 0.00 4.24
755 756 1.370900 CCAGCGAAACAACAGCAGC 60.371 57.895 0.00 0.00 0.00 5.25
756 757 1.356270 CAGCGAAACAACAGCAGCA 59.644 52.632 0.00 0.00 0.00 4.41
757 758 0.659417 CAGCGAAACAACAGCAGCAG 60.659 55.000 0.00 0.00 0.00 4.24
758 759 2.012948 GCGAAACAACAGCAGCAGC 61.013 57.895 0.00 0.00 42.56 5.25
759 760 1.370900 CGAAACAACAGCAGCAGCC 60.371 57.895 0.00 0.00 43.56 4.85
760 761 1.789078 CGAAACAACAGCAGCAGCCT 61.789 55.000 0.00 0.00 43.56 4.58
761 762 1.238439 GAAACAACAGCAGCAGCCTA 58.762 50.000 0.00 0.00 43.56 3.93
762 763 1.198637 GAAACAACAGCAGCAGCCTAG 59.801 52.381 0.00 0.00 43.56 3.02
763 764 1.239968 AACAACAGCAGCAGCCTAGC 61.240 55.000 0.00 0.00 43.56 3.42
764 765 2.435586 AACAGCAGCAGCCTAGCG 60.436 61.111 0.00 0.00 43.56 4.26
765 766 2.947532 AACAGCAGCAGCCTAGCGA 61.948 57.895 0.00 0.00 43.56 4.93
766 767 2.108566 CAGCAGCAGCCTAGCGAT 59.891 61.111 0.00 0.00 43.56 4.58
767 768 1.955157 CAGCAGCAGCCTAGCGATC 60.955 63.158 0.00 0.00 43.56 3.69
768 769 2.664518 GCAGCAGCCTAGCGATCC 60.665 66.667 0.00 0.00 40.15 3.36
769 770 2.030262 CAGCAGCCTAGCGATCCC 59.970 66.667 0.00 0.00 40.15 3.85
770 771 3.237741 AGCAGCCTAGCGATCCCC 61.238 66.667 0.00 0.00 40.15 4.81
771 772 4.321966 GCAGCCTAGCGATCCCCC 62.322 72.222 0.00 0.00 0.00 5.40
772 773 3.996124 CAGCCTAGCGATCCCCCG 61.996 72.222 0.00 0.00 0.00 5.73
773 774 4.220163 AGCCTAGCGATCCCCCGA 62.220 66.667 0.00 0.00 0.00 5.14
774 775 3.231736 GCCTAGCGATCCCCCGAA 61.232 66.667 0.00 0.00 0.00 4.30
775 776 2.735237 CCTAGCGATCCCCCGAAC 59.265 66.667 0.00 0.00 0.00 3.95
776 777 1.833049 CCTAGCGATCCCCCGAACT 60.833 63.158 0.00 0.00 0.00 3.01
777 778 1.364171 CTAGCGATCCCCCGAACTG 59.636 63.158 0.00 0.00 0.00 3.16
778 779 2.088674 CTAGCGATCCCCCGAACTGG 62.089 65.000 0.00 0.00 37.55 4.00
787 788 4.090588 CCGAACTGGGCCGGCTTA 62.091 66.667 28.56 14.75 39.22 3.09
788 789 2.046700 CGAACTGGGCCGGCTTAA 60.047 61.111 28.56 11.32 0.00 1.85
789 790 2.396157 CGAACTGGGCCGGCTTAAC 61.396 63.158 28.56 14.82 0.00 2.01
790 791 1.002502 GAACTGGGCCGGCTTAACT 60.003 57.895 28.56 8.62 0.00 2.24
791 792 1.002502 AACTGGGCCGGCTTAACTC 60.003 57.895 28.56 8.16 0.00 3.01
792 793 1.774894 AACTGGGCCGGCTTAACTCA 61.775 55.000 28.56 13.63 0.00 3.41
793 794 1.745489 CTGGGCCGGCTTAACTCAC 60.745 63.158 28.56 6.44 0.00 3.51
794 795 2.437895 GGGCCGGCTTAACTCACC 60.438 66.667 28.56 12.77 0.00 4.02
795 796 2.669240 GGCCGGCTTAACTCACCT 59.331 61.111 28.56 0.00 0.00 4.00
796 797 1.745489 GGCCGGCTTAACTCACCTG 60.745 63.158 28.56 0.00 0.00 4.00
797 798 2.399356 GCCGGCTTAACTCACCTGC 61.399 63.158 22.15 0.00 0.00 4.85
798 799 2.100631 CCGGCTTAACTCACCTGCG 61.101 63.158 0.00 0.00 0.00 5.18
799 800 1.374252 CGGCTTAACTCACCTGCGT 60.374 57.895 0.00 0.00 0.00 5.24
800 801 1.626654 CGGCTTAACTCACCTGCGTG 61.627 60.000 0.00 0.00 41.72 5.34
801 802 1.497722 GCTTAACTCACCTGCGTGC 59.502 57.895 0.00 0.00 40.04 5.34
802 803 1.781555 CTTAACTCACCTGCGTGCG 59.218 57.895 0.00 0.00 40.04 5.34
803 804 0.944311 CTTAACTCACCTGCGTGCGT 60.944 55.000 0.00 0.00 39.60 5.24
804 805 1.218875 TTAACTCACCTGCGTGCGTG 61.219 55.000 0.00 0.00 36.94 5.34
805 806 2.358193 TAACTCACCTGCGTGCGTGT 62.358 55.000 0.91 0.00 36.94 4.49
806 807 2.967076 CTCACCTGCGTGCGTGTT 60.967 61.111 0.91 0.00 40.04 3.32
807 808 2.512745 TCACCTGCGTGCGTGTTT 60.513 55.556 0.91 0.00 40.04 2.83
808 809 1.218875 CTCACCTGCGTGCGTGTTTA 61.219 55.000 0.91 0.00 40.04 2.01
809 810 0.810426 TCACCTGCGTGCGTGTTTAA 60.810 50.000 0.91 0.00 40.04 1.52
810 811 0.384230 CACCTGCGTGCGTGTTTAAG 60.384 55.000 0.00 0.00 32.04 1.85
811 812 1.206578 CCTGCGTGCGTGTTTAAGG 59.793 57.895 0.00 0.00 0.00 2.69
812 813 1.440353 CTGCGTGCGTGTTTAAGGC 60.440 57.895 0.00 0.00 40.19 4.35
813 814 2.498887 GCGTGCGTGTTTAAGGCG 60.499 61.111 0.00 0.00 42.76 5.52
817 818 2.951458 GCGTGTTTAAGGCGCCTT 59.049 55.556 41.05 41.05 44.67 4.35
818 819 2.164491 GCGTGTTTAAGGCGCCTTA 58.836 52.632 38.79 38.79 44.67 2.69
819 820 0.730840 GCGTGTTTAAGGCGCCTTAT 59.269 50.000 41.33 26.00 44.67 1.73
820 821 1.935199 GCGTGTTTAAGGCGCCTTATA 59.065 47.619 41.33 34.88 44.67 0.98
821 822 2.033151 GCGTGTTTAAGGCGCCTTATAG 60.033 50.000 41.33 30.03 44.67 1.31
822 823 3.192466 CGTGTTTAAGGCGCCTTATAGT 58.808 45.455 41.33 24.51 38.20 2.12
823 824 3.244579 CGTGTTTAAGGCGCCTTATAGTC 59.755 47.826 41.33 30.09 38.20 2.59
824 825 4.186159 GTGTTTAAGGCGCCTTATAGTCA 58.814 43.478 41.33 31.76 38.20 3.41
825 826 4.270325 GTGTTTAAGGCGCCTTATAGTCAG 59.730 45.833 41.33 0.00 38.20 3.51
826 827 4.081309 TGTTTAAGGCGCCTTATAGTCAGT 60.081 41.667 41.33 21.59 38.20 3.41
827 828 4.748277 TTAAGGCGCCTTATAGTCAGTT 57.252 40.909 41.33 20.86 38.20 3.16
828 829 2.604046 AGGCGCCTTATAGTCAGTTG 57.396 50.000 27.08 0.00 0.00 3.16
829 830 1.831736 AGGCGCCTTATAGTCAGTTGT 59.168 47.619 27.08 0.00 0.00 3.32
830 831 3.028850 AGGCGCCTTATAGTCAGTTGTA 58.971 45.455 27.08 0.00 0.00 2.41
831 832 3.449737 AGGCGCCTTATAGTCAGTTGTAA 59.550 43.478 27.08 0.00 0.00 2.41
832 833 4.081309 AGGCGCCTTATAGTCAGTTGTAAA 60.081 41.667 27.08 0.00 0.00 2.01
833 834 4.814771 GGCGCCTTATAGTCAGTTGTAAAT 59.185 41.667 22.15 0.00 0.00 1.40
834 835 5.277345 GGCGCCTTATAGTCAGTTGTAAATG 60.277 44.000 22.15 0.00 0.00 2.32
835 836 5.277345 GCGCCTTATAGTCAGTTGTAAATGG 60.277 44.000 0.00 0.00 0.00 3.16
836 837 5.277345 CGCCTTATAGTCAGTTGTAAATGGC 60.277 44.000 0.00 0.00 0.00 4.40
837 838 5.588648 GCCTTATAGTCAGTTGTAAATGGCA 59.411 40.000 0.00 0.00 34.82 4.92
838 839 6.263168 GCCTTATAGTCAGTTGTAAATGGCAT 59.737 38.462 0.00 0.00 34.82 4.40
839 840 7.444183 GCCTTATAGTCAGTTGTAAATGGCATA 59.556 37.037 0.00 0.00 34.82 3.14
840 841 8.774586 CCTTATAGTCAGTTGTAAATGGCATAC 58.225 37.037 0.00 0.00 0.00 2.39
841 842 9.547753 CTTATAGTCAGTTGTAAATGGCATACT 57.452 33.333 0.00 0.00 0.00 2.12
842 843 7.792374 ATAGTCAGTTGTAAATGGCATACTG 57.208 36.000 17.36 17.36 35.51 2.74
843 844 4.943705 AGTCAGTTGTAAATGGCATACTGG 59.056 41.667 21.18 8.25 35.06 4.00
844 845 3.694072 TCAGTTGTAAATGGCATACTGGC 59.306 43.478 21.18 4.27 44.03 4.85
852 853 3.098555 GCATACTGGCCCGTTTCG 58.901 61.111 4.69 0.00 0.00 3.46
871 872 0.671796 GGAAGTTTCCACCGGTTTGG 59.328 55.000 2.97 4.01 46.76 3.28
872 873 0.031585 GAAGTTTCCACCGGTTTGGC 59.968 55.000 2.97 0.00 43.94 4.52
873 874 1.730451 AAGTTTCCACCGGTTTGGCG 61.730 55.000 2.97 0.00 43.94 5.69
874 875 3.597728 TTTCCACCGGTTTGGCGC 61.598 61.111 2.97 0.00 43.94 6.53
905 906 1.792006 ACACAGACGGTTTCGGAATC 58.208 50.000 0.00 0.00 41.39 2.52
907 908 0.036671 ACAGACGGTTTCGGAATCCC 60.037 55.000 11.30 4.91 41.39 3.85
908 909 0.249398 CAGACGGTTTCGGAATCCCT 59.751 55.000 11.30 1.44 41.39 4.20
960 963 1.812571 GGCTCCACAAATACACCACTG 59.187 52.381 0.00 0.00 0.00 3.66
962 965 2.503331 CTCCACAAATACACCACTGCA 58.497 47.619 0.00 0.00 0.00 4.41
966 969 2.483877 CACAAATACACCACTGCATCGT 59.516 45.455 0.00 0.00 0.00 3.73
983 986 5.163519 TGCATCGTCAGATTACTTCAGATCA 60.164 40.000 0.00 0.00 34.23 2.92
992 995 8.239314 TCAGATTACTTCAGATCAATTGCAAAC 58.761 33.333 1.71 0.00 0.00 2.93
1000 1004 1.489481 TCAATTGCAAACCCACCACA 58.511 45.000 1.71 0.00 0.00 4.17
1005 1012 3.115556 CAAACCCACCACACACCG 58.884 61.111 0.00 0.00 0.00 4.94
1014 1021 1.531149 CACCACACACCGATTTCAGAC 59.469 52.381 0.00 0.00 0.00 3.51
1019 1026 0.966920 ACACCGATTTCAGACCTCGT 59.033 50.000 0.00 0.00 0.00 4.18
1021 1028 2.758979 ACACCGATTTCAGACCTCGTAT 59.241 45.455 0.00 0.00 0.00 3.06
1054 1072 1.131315 GCAGGCTTCTCAAAATCGGAC 59.869 52.381 0.00 0.00 0.00 4.79
1064 1082 0.108138 AAAATCGGACCTCGGCTCAG 60.108 55.000 0.00 0.00 39.77 3.35
1068 1086 2.418910 CGGACCTCGGCTCAGTGAT 61.419 63.158 0.00 0.00 34.75 3.06
1072 1090 0.613292 ACCTCGGCTCAGTGATGAGT 60.613 55.000 13.17 3.19 38.16 3.41
1127 1145 2.570135 GAGGAGAAACCAGGATGCATC 58.430 52.381 18.81 18.81 42.04 3.91
1134 1152 3.646976 CAGGATGCATCAGCGGCG 61.647 66.667 27.25 0.51 46.23 6.46
1517 1563 2.415090 GCGTTCGCCTACTACTTCAAGA 60.415 50.000 5.87 0.00 0.00 3.02
1532 1578 1.837051 AAGACACGGCCTCAGTCCA 60.837 57.895 13.43 0.00 32.82 4.02
1684 1733 2.050351 CGCACCGTCTTCGTGTCT 60.050 61.111 0.00 0.00 35.01 3.41
1943 2010 1.372087 CGACTGGAAGATGGCCAAGC 61.372 60.000 10.96 4.92 37.43 4.01
2142 2215 1.749063 CCGTAGCACTAGGTCATGTCA 59.251 52.381 0.00 0.00 0.00 3.58
2159 2232 2.288213 TGTCAAGTGTCTAAGCACCTCG 60.288 50.000 0.00 0.00 40.04 4.63
2212 2292 4.874970 AGTGCTGTTTATTTGGCTTGAAG 58.125 39.130 0.00 0.00 0.00 3.02
2213 2293 3.429881 GTGCTGTTTATTTGGCTTGAAGC 59.570 43.478 9.04 9.04 41.46 3.86
2217 2297 5.390145 GCTGTTTATTTGGCTTGAAGCATTG 60.390 40.000 19.89 0.00 44.75 2.82
2221 2301 3.557228 TTTGGCTTGAAGCATTGGTTT 57.443 38.095 19.89 0.00 44.75 3.27
2234 3272 1.550327 TTGGTTTTGTGCACACCAGA 58.450 45.000 21.56 11.52 41.65 3.86
2237 3275 2.621055 TGGTTTTGTGCACACCAGATAC 59.379 45.455 21.56 10.03 35.57 2.24
2257 3295 1.466856 CACAGTGGCCTGCAATATGT 58.533 50.000 3.32 0.00 42.81 2.29
2393 3532 7.511268 AGGACACTAAACCAAGTACACAATAA 58.489 34.615 0.00 0.00 0.00 1.40
2513 4282 4.105486 GCCAAGAATGATTACGGCTTTTC 58.895 43.478 5.10 0.00 36.58 2.29
2521 4291 5.607119 TGATTACGGCTTTTCAAAGACTC 57.393 39.130 3.35 0.00 41.99 3.36
2618 4421 5.469084 GTGTAGGCCTAAAGGTGCATAATAC 59.531 44.000 15.83 0.00 37.57 1.89
2625 4428 6.223852 CCTAAAGGTGCATAATACACTCGAT 58.776 40.000 0.00 0.00 38.14 3.59
2739 4562 4.840680 TCTCTTTCTCACCATTCTCTTCCA 59.159 41.667 0.00 0.00 0.00 3.53
2740 4563 5.486775 TCTCTTTCTCACCATTCTCTTCCAT 59.513 40.000 0.00 0.00 0.00 3.41
2741 4564 5.738909 TCTTTCTCACCATTCTCTTCCATC 58.261 41.667 0.00 0.00 0.00 3.51
2742 4565 5.486775 TCTTTCTCACCATTCTCTTCCATCT 59.513 40.000 0.00 0.00 0.00 2.90
2743 4566 6.669591 TCTTTCTCACCATTCTCTTCCATCTA 59.330 38.462 0.00 0.00 0.00 1.98
2744 4567 6.477053 TTCTCACCATTCTCTTCCATCTAG 57.523 41.667 0.00 0.00 0.00 2.43
2783 4606 6.696411 ACGATGCCTCAATTTATTTTCCAAA 58.304 32.000 0.00 0.00 0.00 3.28
2784 4607 7.330262 ACGATGCCTCAATTTATTTTCCAAAT 58.670 30.769 0.00 0.00 0.00 2.32
2785 4608 7.492344 ACGATGCCTCAATTTATTTTCCAAATC 59.508 33.333 0.00 0.00 0.00 2.17
2786 4609 7.707893 CGATGCCTCAATTTATTTTCCAAATCT 59.292 33.333 0.00 0.00 0.00 2.40
2787 4610 8.953368 ATGCCTCAATTTATTTTCCAAATCTC 57.047 30.769 0.00 0.00 0.00 2.75
2788 4611 8.137745 TGCCTCAATTTATTTTCCAAATCTCT 57.862 30.769 0.00 0.00 0.00 3.10
2789 4612 8.596293 TGCCTCAATTTATTTTCCAAATCTCTT 58.404 29.630 0.00 0.00 0.00 2.85
2790 4613 9.091784 GCCTCAATTTATTTTCCAAATCTCTTC 57.908 33.333 0.00 0.00 0.00 2.87
2981 4804 2.114411 GCCTTTGGTCCCGGTTGA 59.886 61.111 0.00 0.00 0.00 3.18
3015 4838 2.633657 CAATAGGCATCCACGCGC 59.366 61.111 5.73 0.00 0.00 6.86
3032 4855 1.893062 GCCAGCATTTCAGGGGTTC 59.107 57.895 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 9.447157 TCAGAAACTTTTGTCATTTTCCAATTT 57.553 25.926 0.00 0.00 0.00 1.82
89 90 9.447157 TTCAGAAACTTTTGTCATTTTCCAATT 57.553 25.926 0.00 0.00 0.00 2.32
90 91 9.617523 ATTCAGAAACTTTTGTCATTTTCCAAT 57.382 25.926 0.00 0.00 0.00 3.16
91 92 9.447157 AATTCAGAAACTTTTGTCATTTTCCAA 57.553 25.926 0.00 0.00 0.00 3.53
92 93 9.447157 AAATTCAGAAACTTTTGTCATTTTCCA 57.553 25.926 0.00 0.00 0.00 3.53
93 94 9.706846 CAAATTCAGAAACTTTTGTCATTTTCC 57.293 29.630 0.00 0.00 0.00 3.13
96 97 9.434420 TCACAAATTCAGAAACTTTTGTCATTT 57.566 25.926 9.49 0.00 39.55 2.32
97 98 9.434420 TTCACAAATTCAGAAACTTTTGTCATT 57.566 25.926 9.49 0.00 39.55 2.57
98 99 8.872845 GTTCACAAATTCAGAAACTTTTGTCAT 58.127 29.630 9.49 0.00 39.55 3.06
99 100 7.869937 TGTTCACAAATTCAGAAACTTTTGTCA 59.130 29.630 9.49 4.42 39.55 3.58
100 101 8.238481 TGTTCACAAATTCAGAAACTTTTGTC 57.762 30.769 9.49 2.44 39.55 3.18
101 102 8.600449 TTGTTCACAAATTCAGAAACTTTTGT 57.400 26.923 7.32 7.32 41.58 2.83
102 103 9.875675 TTTTGTTCACAAATTCAGAAACTTTTG 57.124 25.926 5.95 6.27 44.30 2.44
157 158 9.429359 TGTATGTGTTTTTGAAAAGTGTTCAAT 57.571 25.926 9.31 0.00 38.12 2.57
158 159 8.818141 TGTATGTGTTTTTGAAAAGTGTTCAA 57.182 26.923 4.25 4.25 36.71 2.69
159 160 8.994429 ATGTATGTGTTTTTGAAAAGTGTTCA 57.006 26.923 0.00 0.00 0.00 3.18
172 173 9.853177 TGGGGATTTTAAAAATGTATGTGTTTT 57.147 25.926 4.44 0.00 0.00 2.43
173 174 9.853177 TTGGGGATTTTAAAAATGTATGTGTTT 57.147 25.926 4.44 0.00 0.00 2.83
174 175 9.853177 TTTGGGGATTTTAAAAATGTATGTGTT 57.147 25.926 4.44 0.00 0.00 3.32
180 181 9.853177 AACACATTTGGGGATTTTAAAAATGTA 57.147 25.926 4.44 0.00 45.09 2.29
181 182 8.759481 AACACATTTGGGGATTTTAAAAATGT 57.241 26.923 4.44 5.64 46.81 2.71
184 185 9.243105 TCAAAACACATTTGGGGATTTTAAAAA 57.757 25.926 4.44 0.00 46.85 1.94
185 186 8.807948 TCAAAACACATTTGGGGATTTTAAAA 57.192 26.923 2.51 2.51 46.85 1.52
186 187 8.807948 TTCAAAACACATTTGGGGATTTTAAA 57.192 26.923 1.52 0.00 46.85 1.52
187 188 8.986929 ATTCAAAACACATTTGGGGATTTTAA 57.013 26.923 1.52 0.00 46.85 1.52
188 189 8.986929 AATTCAAAACACATTTGGGGATTTTA 57.013 26.923 1.52 0.00 46.85 1.52
189 190 7.559170 TGAATTCAAAACACATTTGGGGATTTT 59.441 29.630 5.45 0.00 46.85 1.82
190 191 7.059156 TGAATTCAAAACACATTTGGGGATTT 58.941 30.769 5.45 0.00 46.85 2.17
191 192 6.599445 TGAATTCAAAACACATTTGGGGATT 58.401 32.000 5.45 1.20 46.85 3.01
192 193 6.185114 TGAATTCAAAACACATTTGGGGAT 57.815 33.333 5.45 0.00 46.85 3.85
193 194 5.620738 TGAATTCAAAACACATTTGGGGA 57.379 34.783 5.45 0.00 46.85 4.81
194 195 5.996513 TCATGAATTCAAAACACATTTGGGG 59.003 36.000 13.09 0.00 46.85 4.96
195 196 7.012138 TGTTCATGAATTCAAAACACATTTGGG 59.988 33.333 24.69 0.00 46.85 4.12
196 197 7.917597 TGTTCATGAATTCAAAACACATTTGG 58.082 30.769 24.69 3.42 46.85 3.28
223 224 9.030301 CAGAGAATGTTACCGTTTTCAATTTTT 57.970 29.630 0.00 0.00 0.00 1.94
224 225 8.410141 TCAGAGAATGTTACCGTTTTCAATTTT 58.590 29.630 0.00 0.00 0.00 1.82
225 226 7.936584 TCAGAGAATGTTACCGTTTTCAATTT 58.063 30.769 0.00 0.00 0.00 1.82
226 227 7.504924 TCAGAGAATGTTACCGTTTTCAATT 57.495 32.000 0.00 0.00 0.00 2.32
227 228 7.504924 TTCAGAGAATGTTACCGTTTTCAAT 57.495 32.000 0.00 0.00 0.00 2.57
228 229 6.928979 TTCAGAGAATGTTACCGTTTTCAA 57.071 33.333 0.00 0.00 0.00 2.69
229 230 6.928979 TTTCAGAGAATGTTACCGTTTTCA 57.071 33.333 0.00 0.00 0.00 2.69
230 231 8.797266 AATTTTCAGAGAATGTTACCGTTTTC 57.203 30.769 0.00 0.00 0.00 2.29
231 232 7.865889 GGAATTTTCAGAGAATGTTACCGTTTT 59.134 33.333 0.00 0.00 0.00 2.43
232 233 7.368059 GGAATTTTCAGAGAATGTTACCGTTT 58.632 34.615 0.00 0.00 0.00 3.60
233 234 6.348213 CGGAATTTTCAGAGAATGTTACCGTT 60.348 38.462 0.00 0.00 0.00 4.44
234 235 5.121768 CGGAATTTTCAGAGAATGTTACCGT 59.878 40.000 0.00 0.00 0.00 4.83
235 236 5.350365 TCGGAATTTTCAGAGAATGTTACCG 59.650 40.000 0.00 0.00 36.27 4.02
236 237 6.737254 TCGGAATTTTCAGAGAATGTTACC 57.263 37.500 0.00 0.00 0.00 2.85
237 238 8.669243 AGAATCGGAATTTTCAGAGAATGTTAC 58.331 33.333 0.07 0.00 34.98 2.50
238 239 8.792830 AGAATCGGAATTTTCAGAGAATGTTA 57.207 30.769 0.07 0.00 34.98 2.41
239 240 7.693969 AGAATCGGAATTTTCAGAGAATGTT 57.306 32.000 0.07 0.00 34.98 2.71
240 241 7.693969 AAGAATCGGAATTTTCAGAGAATGT 57.306 32.000 0.07 0.00 34.98 2.71
241 242 7.699812 GGAAAGAATCGGAATTTTCAGAGAATG 59.300 37.037 11.65 0.00 34.98 2.67
242 243 7.613411 AGGAAAGAATCGGAATTTTCAGAGAAT 59.387 33.333 11.65 0.00 34.98 2.40
243 244 6.942576 AGGAAAGAATCGGAATTTTCAGAGAA 59.057 34.615 11.65 0.00 34.98 2.87
244 245 6.372659 CAGGAAAGAATCGGAATTTTCAGAGA 59.627 38.462 11.65 0.00 34.98 3.10
245 246 6.372659 TCAGGAAAGAATCGGAATTTTCAGAG 59.627 38.462 11.65 4.44 34.98 3.35
246 247 6.237901 TCAGGAAAGAATCGGAATTTTCAGA 58.762 36.000 11.65 0.00 35.92 3.27
247 248 6.500684 TCAGGAAAGAATCGGAATTTTCAG 57.499 37.500 11.65 6.28 32.57 3.02
248 249 6.892658 TTCAGGAAAGAATCGGAATTTTCA 57.107 33.333 11.65 0.00 32.57 2.69
249 250 7.114953 GTGTTTCAGGAAAGAATCGGAATTTTC 59.885 37.037 0.00 4.58 0.00 2.29
250 251 6.923508 GTGTTTCAGGAAAGAATCGGAATTTT 59.076 34.615 0.00 0.00 0.00 1.82
251 252 6.040391 TGTGTTTCAGGAAAGAATCGGAATTT 59.960 34.615 0.00 0.00 0.00 1.82
252 253 5.534654 TGTGTTTCAGGAAAGAATCGGAATT 59.465 36.000 0.00 0.00 0.00 2.17
253 254 5.048713 GTGTGTTTCAGGAAAGAATCGGAAT 60.049 40.000 0.00 0.00 0.00 3.01
254 255 4.274950 GTGTGTTTCAGGAAAGAATCGGAA 59.725 41.667 0.00 0.00 0.00 4.30
255 256 3.813166 GTGTGTTTCAGGAAAGAATCGGA 59.187 43.478 0.00 0.00 0.00 4.55
256 257 3.815401 AGTGTGTTTCAGGAAAGAATCGG 59.185 43.478 0.00 0.00 0.00 4.18
257 258 6.018262 TGTTAGTGTGTTTCAGGAAAGAATCG 60.018 38.462 0.00 0.00 0.00 3.34
258 259 7.259290 TGTTAGTGTGTTTCAGGAAAGAATC 57.741 36.000 0.00 0.00 0.00 2.52
259 260 7.823745 ATGTTAGTGTGTTTCAGGAAAGAAT 57.176 32.000 0.00 0.00 0.00 2.40
260 261 7.122055 ACAATGTTAGTGTGTTTCAGGAAAGAA 59.878 33.333 0.00 0.00 0.00 2.52
261 262 6.601613 ACAATGTTAGTGTGTTTCAGGAAAGA 59.398 34.615 0.00 0.00 0.00 2.52
262 263 6.795399 ACAATGTTAGTGTGTTTCAGGAAAG 58.205 36.000 0.00 0.00 0.00 2.62
263 264 6.767524 ACAATGTTAGTGTGTTTCAGGAAA 57.232 33.333 0.00 0.00 0.00 3.13
264 265 6.767524 AACAATGTTAGTGTGTTTCAGGAA 57.232 33.333 0.00 0.00 31.52 3.36
265 266 6.375736 TCAAACAATGTTAGTGTGTTTCAGGA 59.624 34.615 0.00 0.00 42.13 3.86
266 267 6.559810 TCAAACAATGTTAGTGTGTTTCAGG 58.440 36.000 0.00 0.00 42.13 3.86
267 268 8.459521 TTTCAAACAATGTTAGTGTGTTTCAG 57.540 30.769 0.00 0.00 42.13 3.02
268 269 8.818141 TTTTCAAACAATGTTAGTGTGTTTCA 57.182 26.923 0.00 0.00 42.13 2.69
269 270 9.687717 CATTTTCAAACAATGTTAGTGTGTTTC 57.312 29.630 0.00 0.00 42.13 2.78
270 271 9.429359 TCATTTTCAAACAATGTTAGTGTGTTT 57.571 25.926 0.00 0.00 44.22 2.83
271 272 8.994429 TCATTTTCAAACAATGTTAGTGTGTT 57.006 26.923 0.00 0.00 37.07 3.32
272 273 8.994429 TTCATTTTCAAACAATGTTAGTGTGT 57.006 26.923 0.00 0.00 33.91 3.72
372 373 9.938280 AGTTTTTAGCTTTTTACCTTTTCAAGT 57.062 25.926 0.00 0.00 0.00 3.16
453 454 9.719355 TCTAAATTCACACTCAGCACTATTAAA 57.281 29.630 0.00 0.00 0.00 1.52
454 455 9.719355 TTCTAAATTCACACTCAGCACTATTAA 57.281 29.630 0.00 0.00 0.00 1.40
455 456 9.719355 TTTCTAAATTCACACTCAGCACTATTA 57.281 29.630 0.00 0.00 0.00 0.98
456 457 8.621532 TTTCTAAATTCACACTCAGCACTATT 57.378 30.769 0.00 0.00 0.00 1.73
457 458 8.507249 GTTTTCTAAATTCACACTCAGCACTAT 58.493 33.333 0.00 0.00 0.00 2.12
458 459 7.497579 TGTTTTCTAAATTCACACTCAGCACTA 59.502 33.333 0.00 0.00 0.00 2.74
459 460 6.318648 TGTTTTCTAAATTCACACTCAGCACT 59.681 34.615 0.00 0.00 0.00 4.40
460 461 6.494842 TGTTTTCTAAATTCACACTCAGCAC 58.505 36.000 0.00 0.00 0.00 4.40
461 462 6.691754 TGTTTTCTAAATTCACACTCAGCA 57.308 33.333 0.00 0.00 0.00 4.41
462 463 9.334693 CTAATGTTTTCTAAATTCACACTCAGC 57.665 33.333 0.00 0.00 0.00 4.26
575 576 5.242393 CCTTCCTTTCTTCAACACATGATGT 59.758 40.000 0.00 0.00 46.42 3.06
576 577 5.336213 CCCTTCCTTTCTTCAACACATGATG 60.336 44.000 0.00 0.00 38.03 3.07
577 578 4.768968 CCCTTCCTTTCTTCAACACATGAT 59.231 41.667 0.00 0.00 38.03 2.45
578 579 4.141274 TCCCTTCCTTTCTTCAACACATGA 60.141 41.667 0.00 0.00 35.85 3.07
579 580 4.144297 TCCCTTCCTTTCTTCAACACATG 58.856 43.478 0.00 0.00 0.00 3.21
580 581 4.453480 TCCCTTCCTTTCTTCAACACAT 57.547 40.909 0.00 0.00 0.00 3.21
581 582 3.943671 TCCCTTCCTTTCTTCAACACA 57.056 42.857 0.00 0.00 0.00 3.72
582 583 5.592104 TTTTCCCTTCCTTTCTTCAACAC 57.408 39.130 0.00 0.00 0.00 3.32
583 584 6.806668 ATTTTTCCCTTCCTTTCTTCAACA 57.193 33.333 0.00 0.00 0.00 3.33
584 585 9.261180 CTTTATTTTTCCCTTCCTTTCTTCAAC 57.739 33.333 0.00 0.00 0.00 3.18
585 586 9.207868 TCTTTATTTTTCCCTTCCTTTCTTCAA 57.792 29.630 0.00 0.00 0.00 2.69
586 587 8.776061 TCTTTATTTTTCCCTTCCTTTCTTCA 57.224 30.769 0.00 0.00 0.00 3.02
587 588 9.698309 CTTCTTTATTTTTCCCTTCCTTTCTTC 57.302 33.333 0.00 0.00 0.00 2.87
588 589 9.434275 TCTTCTTTATTTTTCCCTTCCTTTCTT 57.566 29.630 0.00 0.00 0.00 2.52
589 590 9.607333 ATCTTCTTTATTTTTCCCTTCCTTTCT 57.393 29.630 0.00 0.00 0.00 2.52
663 664 6.764379 TGGGTTTTCTGTTTTGACTCTTTTT 58.236 32.000 0.00 0.00 0.00 1.94
664 665 6.353404 TGGGTTTTCTGTTTTGACTCTTTT 57.647 33.333 0.00 0.00 0.00 2.27
665 666 5.993748 TGGGTTTTCTGTTTTGACTCTTT 57.006 34.783 0.00 0.00 0.00 2.52
666 667 5.245075 TGTTGGGTTTTCTGTTTTGACTCTT 59.755 36.000 0.00 0.00 0.00 2.85
667 668 4.770010 TGTTGGGTTTTCTGTTTTGACTCT 59.230 37.500 0.00 0.00 0.00 3.24
668 669 5.066968 TGTTGGGTTTTCTGTTTTGACTC 57.933 39.130 0.00 0.00 0.00 3.36
669 670 5.476091 TTGTTGGGTTTTCTGTTTTGACT 57.524 34.783 0.00 0.00 0.00 3.41
670 671 6.546972 TTTTGTTGGGTTTTCTGTTTTGAC 57.453 33.333 0.00 0.00 0.00 3.18
671 672 6.293680 GCTTTTTGTTGGGTTTTCTGTTTTGA 60.294 34.615 0.00 0.00 0.00 2.69
672 673 5.855925 GCTTTTTGTTGGGTTTTCTGTTTTG 59.144 36.000 0.00 0.00 0.00 2.44
673 674 5.532779 TGCTTTTTGTTGGGTTTTCTGTTTT 59.467 32.000 0.00 0.00 0.00 2.43
674 675 5.066593 TGCTTTTTGTTGGGTTTTCTGTTT 58.933 33.333 0.00 0.00 0.00 2.83
675 676 4.646572 TGCTTTTTGTTGGGTTTTCTGTT 58.353 34.783 0.00 0.00 0.00 3.16
676 677 4.278975 TGCTTTTTGTTGGGTTTTCTGT 57.721 36.364 0.00 0.00 0.00 3.41
677 678 4.453819 TGTTGCTTTTTGTTGGGTTTTCTG 59.546 37.500 0.00 0.00 0.00 3.02
678 679 4.646572 TGTTGCTTTTTGTTGGGTTTTCT 58.353 34.783 0.00 0.00 0.00 2.52
679 680 5.150683 GTTGTTGCTTTTTGTTGGGTTTTC 58.849 37.500 0.00 0.00 0.00 2.29
680 681 4.580580 TGTTGTTGCTTTTTGTTGGGTTTT 59.419 33.333 0.00 0.00 0.00 2.43
681 682 4.137543 TGTTGTTGCTTTTTGTTGGGTTT 58.862 34.783 0.00 0.00 0.00 3.27
682 683 3.744660 TGTTGTTGCTTTTTGTTGGGTT 58.255 36.364 0.00 0.00 0.00 4.11
683 684 3.007398 TCTGTTGTTGCTTTTTGTTGGGT 59.993 39.130 0.00 0.00 0.00 4.51
684 685 3.594134 TCTGTTGTTGCTTTTTGTTGGG 58.406 40.909 0.00 0.00 0.00 4.12
685 686 5.604010 TTTCTGTTGTTGCTTTTTGTTGG 57.396 34.783 0.00 0.00 0.00 3.77
714 715 1.843992 CGCTGCTGCAGTTTCTTTTT 58.156 45.000 28.50 0.00 39.64 1.94
715 716 0.595825 GCGCTGCTGCAGTTTCTTTT 60.596 50.000 28.50 0.00 39.64 2.27
716 717 1.008079 GCGCTGCTGCAGTTTCTTT 60.008 52.632 28.50 0.00 39.64 2.52
717 718 2.188829 TGCGCTGCTGCAGTTTCTT 61.189 52.632 28.50 0.00 40.62 2.52
718 719 2.592574 TGCGCTGCTGCAGTTTCT 60.593 55.556 28.50 0.00 40.62 2.52
733 734 1.370900 CTGTTGTTTCGCTGGCTGC 60.371 57.895 6.26 6.26 38.57 5.25
734 735 1.370900 GCTGTTGTTTCGCTGGCTG 60.371 57.895 0.00 0.00 0.00 4.85
735 736 1.789078 CTGCTGTTGTTTCGCTGGCT 61.789 55.000 0.00 0.00 0.00 4.75
736 737 1.370900 CTGCTGTTGTTTCGCTGGC 60.371 57.895 0.00 0.00 0.00 4.85
737 738 1.370900 GCTGCTGTTGTTTCGCTGG 60.371 57.895 0.00 0.00 0.00 4.85
738 739 0.659417 CTGCTGCTGTTGTTTCGCTG 60.659 55.000 0.00 0.00 0.00 5.18
739 740 1.650912 CTGCTGCTGTTGTTTCGCT 59.349 52.632 0.00 0.00 0.00 4.93
740 741 2.012948 GCTGCTGCTGTTGTTTCGC 61.013 57.895 8.53 0.00 36.03 4.70
741 742 1.370900 GGCTGCTGCTGTTGTTTCG 60.371 57.895 15.64 0.00 39.59 3.46
742 743 1.198637 CTAGGCTGCTGCTGTTGTTTC 59.801 52.381 15.64 0.00 39.59 2.78
743 744 1.242076 CTAGGCTGCTGCTGTTGTTT 58.758 50.000 15.64 0.00 39.59 2.83
744 745 1.239968 GCTAGGCTGCTGCTGTTGTT 61.240 55.000 15.64 0.00 39.59 2.83
745 746 1.673665 GCTAGGCTGCTGCTGTTGT 60.674 57.895 15.64 0.00 39.59 3.32
746 747 2.747822 CGCTAGGCTGCTGCTGTTG 61.748 63.158 15.64 5.69 39.59 3.33
747 748 2.249413 ATCGCTAGGCTGCTGCTGTT 62.249 55.000 15.64 4.51 39.59 3.16
748 749 2.641439 GATCGCTAGGCTGCTGCTGT 62.641 60.000 15.64 5.93 39.59 4.40
749 750 1.955157 GATCGCTAGGCTGCTGCTG 60.955 63.158 15.64 0.77 39.59 4.41
750 751 2.420890 GATCGCTAGGCTGCTGCT 59.579 61.111 15.64 4.34 39.59 4.24
751 752 2.664518 GGATCGCTAGGCTGCTGC 60.665 66.667 7.10 7.10 38.76 5.25
752 753 2.030262 GGGATCGCTAGGCTGCTG 59.970 66.667 1.84 0.00 0.00 4.41
753 754 3.237741 GGGGATCGCTAGGCTGCT 61.238 66.667 9.90 0.00 0.00 4.24
754 755 4.321966 GGGGGATCGCTAGGCTGC 62.322 72.222 9.90 0.00 0.00 5.25
755 756 3.996124 CGGGGGATCGCTAGGCTG 61.996 72.222 9.90 0.00 0.00 4.85
756 757 3.751049 TTCGGGGGATCGCTAGGCT 62.751 63.158 9.90 0.00 0.00 4.58
757 758 3.231736 TTCGGGGGATCGCTAGGC 61.232 66.667 9.90 0.00 0.00 3.93
758 759 1.833049 AGTTCGGGGGATCGCTAGG 60.833 63.158 9.90 0.00 0.00 3.02
759 760 1.364171 CAGTTCGGGGGATCGCTAG 59.636 63.158 9.90 4.39 0.00 3.42
760 761 2.131709 CCAGTTCGGGGGATCGCTA 61.132 63.158 9.90 0.00 0.00 4.26
761 762 3.470888 CCAGTTCGGGGGATCGCT 61.471 66.667 9.90 0.00 0.00 4.93
771 772 2.046700 TTAAGCCGGCCCAGTTCG 60.047 61.111 26.15 0.00 0.00 3.95
772 773 1.002502 AGTTAAGCCGGCCCAGTTC 60.003 57.895 26.15 9.35 0.00 3.01
773 774 1.002502 GAGTTAAGCCGGCCCAGTT 60.003 57.895 26.15 13.90 0.00 3.16
774 775 2.221299 TGAGTTAAGCCGGCCCAGT 61.221 57.895 26.15 10.33 0.00 4.00
775 776 1.745489 GTGAGTTAAGCCGGCCCAG 60.745 63.158 26.15 0.00 0.00 4.45
776 777 2.349755 GTGAGTTAAGCCGGCCCA 59.650 61.111 26.15 8.47 0.00 5.36
777 778 2.437895 GGTGAGTTAAGCCGGCCC 60.438 66.667 26.15 11.03 0.00 5.80
778 779 1.745489 CAGGTGAGTTAAGCCGGCC 60.745 63.158 26.15 7.74 0.00 6.13
779 780 2.399356 GCAGGTGAGTTAAGCCGGC 61.399 63.158 21.89 21.89 36.45 6.13
780 781 2.100631 CGCAGGTGAGTTAAGCCGG 61.101 63.158 0.00 0.00 0.00 6.13
781 782 1.374252 ACGCAGGTGAGTTAAGCCG 60.374 57.895 0.00 0.00 0.00 5.52
782 783 4.695560 ACGCAGGTGAGTTAAGCC 57.304 55.556 0.00 0.00 0.00 4.35
792 793 1.503818 CCTTAAACACGCACGCAGGT 61.504 55.000 0.00 0.00 0.00 4.00
793 794 1.206578 CCTTAAACACGCACGCAGG 59.793 57.895 0.00 0.00 0.00 4.85
794 795 1.440353 GCCTTAAACACGCACGCAG 60.440 57.895 0.00 0.00 0.00 5.18
795 796 2.634777 GCCTTAAACACGCACGCA 59.365 55.556 0.00 0.00 0.00 5.24
796 797 2.498887 CGCCTTAAACACGCACGC 60.499 61.111 0.00 0.00 0.00 5.34
801 802 3.192466 ACTATAAGGCGCCTTAAACACG 58.808 45.455 43.40 30.84 41.21 4.49
802 803 4.186159 TGACTATAAGGCGCCTTAAACAC 58.814 43.478 43.40 33.01 41.21 3.32
803 804 4.081309 ACTGACTATAAGGCGCCTTAAACA 60.081 41.667 43.40 34.37 41.21 2.83
804 805 4.439968 ACTGACTATAAGGCGCCTTAAAC 58.560 43.478 43.40 32.46 41.21 2.01
805 806 4.748277 ACTGACTATAAGGCGCCTTAAA 57.252 40.909 43.40 30.10 41.21 1.52
806 807 4.081309 ACAACTGACTATAAGGCGCCTTAA 60.081 41.667 43.40 31.32 41.21 1.85
807 808 3.449737 ACAACTGACTATAAGGCGCCTTA 59.550 43.478 42.37 42.37 41.95 2.69
808 809 2.236395 ACAACTGACTATAAGGCGCCTT 59.764 45.455 41.05 41.05 39.83 4.35
809 810 1.831736 ACAACTGACTATAAGGCGCCT 59.168 47.619 27.08 27.08 0.00 5.52
810 811 2.311124 ACAACTGACTATAAGGCGCC 57.689 50.000 21.89 21.89 0.00 6.53
811 812 5.277345 CCATTTACAACTGACTATAAGGCGC 60.277 44.000 0.00 0.00 0.00 6.53
812 813 5.277345 GCCATTTACAACTGACTATAAGGCG 60.277 44.000 0.00 0.00 0.00 5.52
813 814 5.588648 TGCCATTTACAACTGACTATAAGGC 59.411 40.000 0.00 0.00 36.50 4.35
814 815 7.807977 ATGCCATTTACAACTGACTATAAGG 57.192 36.000 0.00 0.00 0.00 2.69
815 816 9.547753 AGTATGCCATTTACAACTGACTATAAG 57.452 33.333 0.00 0.00 0.00 1.73
816 817 9.325198 CAGTATGCCATTTACAACTGACTATAA 57.675 33.333 0.00 0.00 37.18 0.98
817 818 7.931407 CCAGTATGCCATTTACAACTGACTATA 59.069 37.037 6.19 0.00 37.18 1.31
818 819 6.767902 CCAGTATGCCATTTACAACTGACTAT 59.232 38.462 6.19 0.00 37.18 2.12
819 820 6.112734 CCAGTATGCCATTTACAACTGACTA 58.887 40.000 6.19 0.00 37.18 2.59
820 821 4.943705 CCAGTATGCCATTTACAACTGACT 59.056 41.667 6.19 0.00 37.18 3.41
821 822 4.438744 GCCAGTATGCCATTTACAACTGAC 60.439 45.833 6.19 0.00 37.18 3.51
822 823 3.694072 GCCAGTATGCCATTTACAACTGA 59.306 43.478 6.19 0.00 37.18 3.41
823 824 4.032703 GCCAGTATGCCATTTACAACTG 57.967 45.455 0.00 0.00 35.29 3.16
835 836 2.469516 CCGAAACGGGCCAGTATGC 61.470 63.158 9.60 0.63 44.15 3.14
836 837 3.808036 CCGAAACGGGCCAGTATG 58.192 61.111 9.60 1.87 44.15 2.39
852 853 3.289227 GCCAAACCGGTGGAAACTTCC 62.289 57.143 8.52 1.23 41.65 3.46
853 854 0.031585 GCCAAACCGGTGGAAACTTC 59.968 55.000 8.52 0.00 41.65 3.01
854 855 1.730451 CGCCAAACCGGTGGAAACTT 61.730 55.000 8.52 0.00 41.65 2.66
855 856 2.190841 CGCCAAACCGGTGGAAACT 61.191 57.895 8.52 0.00 41.65 2.66
856 857 2.333581 CGCCAAACCGGTGGAAAC 59.666 61.111 8.52 0.00 41.65 2.78
857 858 3.597728 GCGCCAAACCGGTGGAAA 61.598 61.111 8.52 0.00 46.23 3.13
862 863 2.670592 GTAAGGCGCCAAACCGGT 60.671 61.111 31.54 0.00 36.97 5.28
863 864 2.670251 TGTAAGGCGCCAAACCGG 60.670 61.111 31.54 0.00 38.11 5.28
864 865 2.867472 CTGTAAGGCGCCAAACCG 59.133 61.111 31.54 17.98 0.00 4.44
875 876 1.531149 CCGTCTGTGTTTGCCTGTAAG 59.469 52.381 0.00 0.00 0.00 2.34
876 877 1.134340 ACCGTCTGTGTTTGCCTGTAA 60.134 47.619 0.00 0.00 0.00 2.41
886 887 1.607251 GGATTCCGAAACCGTCTGTGT 60.607 52.381 0.00 0.00 0.00 3.72
930 932 1.484038 TTGTGGAGCCTGCTTGTTTT 58.516 45.000 0.00 0.00 0.00 2.43
960 963 5.284864 TGATCTGAAGTAATCTGACGATGC 58.715 41.667 0.00 0.00 38.62 3.91
962 965 7.042187 GCAATTGATCTGAAGTAATCTGACGAT 60.042 37.037 10.34 0.00 38.62 3.73
966 969 7.926674 TTGCAATTGATCTGAAGTAATCTGA 57.073 32.000 10.34 0.00 39.90 3.27
983 986 1.134551 GTGTGTGGTGGGTTTGCAATT 60.135 47.619 0.00 0.00 0.00 2.32
992 995 0.536233 TGAAATCGGTGTGTGGTGGG 60.536 55.000 0.00 0.00 0.00 4.61
1000 1004 0.966920 ACGAGGTCTGAAATCGGTGT 59.033 50.000 14.73 0.00 40.67 4.16
1029 1036 3.378112 CGATTTTGAGAAGCCTGCCAATA 59.622 43.478 0.00 0.00 0.00 1.90
1034 1041 1.131315 GTCCGATTTTGAGAAGCCTGC 59.869 52.381 0.00 0.00 0.00 4.85
1035 1042 1.740025 GGTCCGATTTTGAGAAGCCTG 59.260 52.381 0.00 0.00 0.00 4.85
1036 1043 1.630878 AGGTCCGATTTTGAGAAGCCT 59.369 47.619 0.00 0.00 0.00 4.58
1040 1047 1.674817 GCCGAGGTCCGATTTTGAGAA 60.675 52.381 0.00 0.00 41.76 2.87
1041 1048 0.108329 GCCGAGGTCCGATTTTGAGA 60.108 55.000 0.00 0.00 41.76 3.27
1042 1049 0.108138 AGCCGAGGTCCGATTTTGAG 60.108 55.000 0.00 0.00 41.76 3.02
1064 1082 4.737352 GCTCATCTTCTCCTGACTCATCAC 60.737 50.000 0.00 0.00 0.00 3.06
1068 1086 3.023119 GAGCTCATCTTCTCCTGACTCA 58.977 50.000 9.40 0.00 0.00 3.41
1072 1090 1.397672 CGGAGCTCATCTTCTCCTGA 58.602 55.000 17.19 0.00 45.12 3.86
1259 1278 2.365635 GAGGGCTGGGCTACTGGA 60.366 66.667 0.00 0.00 0.00 3.86
1517 1563 2.982130 GATGGACTGAGGCCGTGT 59.018 61.111 2.31 0.00 0.00 4.49
1873 1931 1.599606 CTGTGCTGCTACGGGAGACT 61.600 60.000 0.00 0.00 32.36 3.24
1981 2054 2.496817 GCAGTGAGAGTAGGGCCG 59.503 66.667 0.00 0.00 0.00 6.13
1984 2057 0.467384 CCATGGCAGTGAGAGTAGGG 59.533 60.000 0.00 0.00 0.00 3.53
2142 2215 0.608640 CCCGAGGTGCTTAGACACTT 59.391 55.000 6.72 0.28 40.52 3.16
2212 2292 0.936600 GGTGTGCACAAAACCAATGC 59.063 50.000 23.59 5.36 39.88 3.56
2213 2293 2.159128 TCTGGTGTGCACAAAACCAATG 60.159 45.455 23.59 13.61 43.21 2.82
2217 2297 2.030274 GGTATCTGGTGTGCACAAAACC 60.030 50.000 23.59 19.24 34.38 3.27
2221 2301 1.141858 TGTGGTATCTGGTGTGCACAA 59.858 47.619 23.59 6.20 0.00 3.33
2234 3272 0.332632 ATTGCAGGCCACTGTGGTAT 59.667 50.000 26.48 13.61 46.62 2.73
2237 3275 0.742505 CATATTGCAGGCCACTGTGG 59.257 55.000 22.46 22.46 46.62 4.17
2257 3295 4.697828 ACACACGATTAATATGTTGCCACA 59.302 37.500 0.00 0.00 37.31 4.17
2412 4181 3.251729 TGTTAGGTACGCCGAGATCATAC 59.748 47.826 0.00 0.00 40.50 2.39
2414 4183 2.293677 CTGTTAGGTACGCCGAGATCAT 59.706 50.000 0.00 0.00 40.50 2.45
2415 4184 1.674441 CTGTTAGGTACGCCGAGATCA 59.326 52.381 0.00 0.00 40.50 2.92
2513 4282 6.018262 TGACAGAAAATTGTACCGAGTCTTTG 60.018 38.462 0.00 0.00 0.00 2.77
2521 4291 3.363575 CCACGTGACAGAAAATTGTACCG 60.364 47.826 19.30 0.00 33.22 4.02
2712 4535 2.843113 AGAATGGTGAGAAAGAGAGGGG 59.157 50.000 0.00 0.00 0.00 4.79
2739 4562 3.740141 CGTATGGGCGGTGAAAACTAGAT 60.740 47.826 0.00 0.00 0.00 1.98
2740 4563 2.417651 CGTATGGGCGGTGAAAACTAGA 60.418 50.000 0.00 0.00 0.00 2.43
2741 4564 1.931172 CGTATGGGCGGTGAAAACTAG 59.069 52.381 0.00 0.00 0.00 2.57
2742 4565 1.549620 TCGTATGGGCGGTGAAAACTA 59.450 47.619 0.00 0.00 0.00 2.24
2743 4566 0.322322 TCGTATGGGCGGTGAAAACT 59.678 50.000 0.00 0.00 0.00 2.66
2744 4567 1.063469 CATCGTATGGGCGGTGAAAAC 59.937 52.381 0.00 0.00 44.92 2.43
2783 4606 9.756571 TCTTTTTCTACTAGTGTAGGAAGAGAT 57.243 33.333 5.39 0.00 44.15 2.75
2784 4607 9.233649 CTCTTTTTCTACTAGTGTAGGAAGAGA 57.766 37.037 22.44 18.39 45.51 3.10
2785 4608 9.016438 ACTCTTTTTCTACTAGTGTAGGAAGAG 57.984 37.037 23.80 23.80 46.48 2.85
2786 4609 8.937207 ACTCTTTTTCTACTAGTGTAGGAAGA 57.063 34.615 5.39 8.75 43.07 2.87
2787 4610 8.794553 TGACTCTTTTTCTACTAGTGTAGGAAG 58.205 37.037 5.39 4.91 43.07 3.46
2788 4611 8.701908 TGACTCTTTTTCTACTAGTGTAGGAA 57.298 34.615 5.39 2.31 44.61 3.36
2789 4612 8.880991 ATGACTCTTTTTCTACTAGTGTAGGA 57.119 34.615 5.39 0.00 44.61 2.94
2790 4613 8.962679 AGATGACTCTTTTTCTACTAGTGTAGG 58.037 37.037 5.39 0.00 44.61 3.18
2809 4632 0.836400 ACCAACCGGGACAGATGACT 60.836 55.000 6.32 0.00 41.15 3.41
2981 4804 1.493854 TTGGTCCCGGTTAGTGCCAT 61.494 55.000 0.00 0.00 0.00 4.40
3015 4838 1.315257 CCGAACCCCTGAAATGCTGG 61.315 60.000 0.00 0.00 35.50 4.85
3219 5051 6.808008 ATGTTCATGACGATCTTCTGTTTT 57.192 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.