Multiple sequence alignment - TraesCS6D01G103900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G103900 chr6D 100.000 3069 0 0 1 3069 67519549 67516481 0.000000e+00 5668.0
1 TraesCS6D01G103900 chr6D 89.068 311 32 2 43 352 457643352 457643661 4.800000e-103 385.0
2 TraesCS6D01G103900 chr6D 86.626 329 44 0 363 691 56836972 56837300 6.250000e-97 364.0
3 TraesCS6D01G103900 chr6B 92.156 2384 135 24 699 3069 142503691 142501347 0.000000e+00 3319.0
4 TraesCS6D01G103900 chr6B 83.077 325 53 2 363 687 655079858 655079536 8.320000e-76 294.0
5 TraesCS6D01G103900 chr6A 92.136 1386 67 10 698 2072 85023713 85022359 0.000000e+00 1917.0
6 TraesCS6D01G103900 chr6A 91.798 1012 69 8 2054 3057 85020925 85019920 0.000000e+00 1397.0
7 TraesCS6D01G103900 chr5D 90.312 320 23 6 34 352 383741676 383741988 2.200000e-111 412.0
8 TraesCS6D01G103900 chr4D 89.490 314 28 4 39 352 485685005 485684697 2.870000e-105 392.0
9 TraesCS6D01G103900 chr4D 87.500 320 34 5 34 352 8392861 8393175 6.250000e-97 364.0
10 TraesCS6D01G103900 chr5B 88.438 320 33 4 34 352 460218851 460219167 1.730000e-102 383.0
11 TraesCS6D01G103900 chr5B 82.166 314 54 1 365 678 655247255 655247566 5.040000e-68 268.0
12 TraesCS6D01G103900 chr7D 88.272 324 30 5 34 352 582092883 582092563 6.210000e-102 381.0
13 TraesCS6D01G103900 chr7D 87.500 320 36 4 34 352 256228271 256228587 1.740000e-97 366.0
14 TraesCS6D01G103900 chr7D 82.822 326 54 2 368 692 551593593 551593269 1.080000e-74 291.0
15 TraesCS6D01G103900 chr7D 83.882 304 47 2 385 686 29737254 29737557 3.870000e-74 289.0
16 TraesCS6D01G103900 chr7D 90.244 41 3 1 1 40 72119408 72119368 6.000000e-03 52.8
17 TraesCS6D01G103900 chr3D 86.850 327 40 3 42 366 25385837 25385512 2.250000e-96 363.0
18 TraesCS6D01G103900 chr3D 84.848 330 47 3 362 691 554404787 554404461 2.280000e-86 329.0
19 TraesCS6D01G103900 chr2B 84.011 369 55 4 1 366 638762617 638762984 4.870000e-93 351.0
20 TraesCS6D01G103900 chr2B 89.695 262 21 1 1046 1307 680769678 680769423 2.280000e-86 329.0
21 TraesCS6D01G103900 chr2D 85.460 337 29 17 984 1307 568232216 568231887 1.760000e-87 333.0
22 TraesCS6D01G103900 chr2D 86.331 278 36 1 360 637 535755534 535755259 4.970000e-78 302.0
23 TraesCS6D01G103900 chr2A 93.333 225 15 0 1083 1307 707750859 707750635 1.760000e-87 333.0
24 TraesCS6D01G103900 chr1D 83.891 329 51 2 363 691 67003092 67002766 2.300000e-81 313.0
25 TraesCS6D01G103900 chr3A 83.735 332 46 6 362 691 690982600 690982275 1.070000e-79 307.0
26 TraesCS6D01G103900 chr5A 80.240 334 62 4 360 691 648610889 648611220 6.570000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G103900 chr6D 67516481 67519549 3068 True 5668 5668 100.000 1 3069 1 chr6D.!!$R1 3068
1 TraesCS6D01G103900 chr6B 142501347 142503691 2344 True 3319 3319 92.156 699 3069 1 chr6B.!!$R1 2370
2 TraesCS6D01G103900 chr6A 85019920 85023713 3793 True 1657 1917 91.967 698 3057 2 chr6A.!!$R1 2359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.030101 CGAGCATCTTCGTCTCCTCC 59.970 60.0 0.0 0.0 35.91 4.30 F
674 675 0.037975 TGAGACGGGTTTAAGGCGTC 60.038 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1753 0.609957 TCTCGTGGTACATCCGGTGT 60.610 55.0 13.10 13.10 44.52 4.16 R
2202 3675 0.897621 AAAAGGGCTTGCCATGTAGC 59.102 50.0 14.04 3.77 36.66 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.802862 TACAACCGGACTTGGCAAA 57.197 47.368 9.46 0.00 0.00 3.68
19 20 2.279935 TACAACCGGACTTGGCAAAT 57.720 45.000 9.46 0.00 0.00 2.32
20 21 1.408969 ACAACCGGACTTGGCAAATT 58.591 45.000 9.46 0.00 0.00 1.82
21 22 1.339929 ACAACCGGACTTGGCAAATTC 59.660 47.619 9.46 0.39 0.00 2.17
22 23 0.596082 AACCGGACTTGGCAAATTCG 59.404 50.000 9.46 1.67 0.00 3.34
23 24 1.241315 ACCGGACTTGGCAAATTCGG 61.241 55.000 25.60 25.60 0.00 4.30
24 25 1.154035 CGGACTTGGCAAATTCGGC 60.154 57.895 0.51 0.00 0.00 5.54
30 31 3.064416 GGCAAATTCGGCCCCAAA 58.936 55.556 9.40 0.00 45.87 3.28
31 32 1.373059 GGCAAATTCGGCCCCAAAA 59.627 52.632 9.40 0.00 45.87 2.44
32 33 0.250510 GGCAAATTCGGCCCCAAAAA 60.251 50.000 9.40 0.00 45.87 1.94
33 34 1.155889 GCAAATTCGGCCCCAAAAAG 58.844 50.000 0.00 0.00 0.00 2.27
34 35 1.155889 CAAATTCGGCCCCAAAAAGC 58.844 50.000 0.00 0.00 0.00 3.51
35 36 0.036164 AAATTCGGCCCCAAAAAGCC 59.964 50.000 0.00 0.00 46.17 4.35
41 42 3.747976 CCCCAAAAAGCCCGCGAG 61.748 66.667 8.23 0.00 0.00 5.03
42 43 4.419939 CCCAAAAAGCCCGCGAGC 62.420 66.667 8.23 5.85 0.00 5.03
43 44 4.759096 CCAAAAAGCCCGCGAGCG 62.759 66.667 8.23 10.86 38.01 5.03
76 77 4.344865 ACCGGGCACGCCTCAAAT 62.345 61.111 0.58 0.00 39.22 2.32
77 78 3.061848 CCGGGCACGCCTCAAATT 61.062 61.111 0.58 0.00 39.22 1.82
78 79 1.747367 CCGGGCACGCCTCAAATTA 60.747 57.895 0.58 0.00 39.22 1.40
79 80 1.714899 CCGGGCACGCCTCAAATTAG 61.715 60.000 0.58 0.00 39.22 1.73
80 81 1.433471 GGGCACGCCTCAAATTAGC 59.567 57.895 8.20 0.00 36.10 3.09
81 82 1.433471 GGCACGCCTCAAATTAGCC 59.567 57.895 0.00 0.00 0.00 3.93
82 83 1.312371 GGCACGCCTCAAATTAGCCA 61.312 55.000 0.00 0.00 40.29 4.75
83 84 0.179163 GCACGCCTCAAATTAGCCAC 60.179 55.000 0.00 0.00 0.00 5.01
84 85 1.453155 CACGCCTCAAATTAGCCACT 58.547 50.000 0.00 0.00 0.00 4.00
85 86 1.812571 CACGCCTCAAATTAGCCACTT 59.187 47.619 0.00 0.00 0.00 3.16
86 87 2.228822 CACGCCTCAAATTAGCCACTTT 59.771 45.455 0.00 0.00 0.00 2.66
87 88 2.228822 ACGCCTCAAATTAGCCACTTTG 59.771 45.455 0.00 0.00 34.41 2.77
88 89 2.610433 GCCTCAAATTAGCCACTTTGC 58.390 47.619 0.00 0.00 33.40 3.68
89 90 2.029110 GCCTCAAATTAGCCACTTTGCA 60.029 45.455 0.00 0.00 33.40 4.08
90 91 3.368739 GCCTCAAATTAGCCACTTTGCAT 60.369 43.478 0.00 0.00 33.40 3.96
91 92 4.427312 CCTCAAATTAGCCACTTTGCATC 58.573 43.478 0.00 0.00 33.40 3.91
92 93 4.427312 CTCAAATTAGCCACTTTGCATCC 58.573 43.478 0.00 0.00 33.40 3.51
93 94 3.119531 TCAAATTAGCCACTTTGCATCCG 60.120 43.478 0.00 0.00 33.40 4.18
94 95 0.740737 ATTAGCCACTTTGCATCCGC 59.259 50.000 0.00 0.00 39.24 5.54
95 96 1.312371 TTAGCCACTTTGCATCCGCC 61.312 55.000 0.00 0.00 37.32 6.13
96 97 2.196997 TAGCCACTTTGCATCCGCCT 62.197 55.000 0.00 0.00 37.32 5.52
97 98 3.056313 GCCACTTTGCATCCGCCTC 62.056 63.158 0.00 0.00 37.32 4.70
98 99 1.377725 CCACTTTGCATCCGCCTCT 60.378 57.895 0.00 0.00 37.32 3.69
99 100 1.372087 CCACTTTGCATCCGCCTCTC 61.372 60.000 0.00 0.00 37.32 3.20
100 101 0.392193 CACTTTGCATCCGCCTCTCT 60.392 55.000 0.00 0.00 37.32 3.10
101 102 0.107945 ACTTTGCATCCGCCTCTCTC 60.108 55.000 0.00 0.00 37.32 3.20
102 103 0.107993 CTTTGCATCCGCCTCTCTCA 60.108 55.000 0.00 0.00 37.32 3.27
103 104 0.543277 TTTGCATCCGCCTCTCTCAT 59.457 50.000 0.00 0.00 37.32 2.90
104 105 1.413118 TTGCATCCGCCTCTCTCATA 58.587 50.000 0.00 0.00 37.32 2.15
105 106 1.637338 TGCATCCGCCTCTCTCATAT 58.363 50.000 0.00 0.00 37.32 1.78
106 107 1.973515 TGCATCCGCCTCTCTCATATT 59.026 47.619 0.00 0.00 37.32 1.28
107 108 2.369860 TGCATCCGCCTCTCTCATATTT 59.630 45.455 0.00 0.00 37.32 1.40
108 109 2.999355 GCATCCGCCTCTCTCATATTTC 59.001 50.000 0.00 0.00 0.00 2.17
109 110 3.555795 GCATCCGCCTCTCTCATATTTCA 60.556 47.826 0.00 0.00 0.00 2.69
110 111 4.829968 CATCCGCCTCTCTCATATTTCAT 58.170 43.478 0.00 0.00 0.00 2.57
111 112 4.527509 TCCGCCTCTCTCATATTTCATC 57.472 45.455 0.00 0.00 0.00 2.92
112 113 3.259374 TCCGCCTCTCTCATATTTCATCC 59.741 47.826 0.00 0.00 0.00 3.51
113 114 3.594134 CGCCTCTCTCATATTTCATCCC 58.406 50.000 0.00 0.00 0.00 3.85
114 115 3.618507 CGCCTCTCTCATATTTCATCCCC 60.619 52.174 0.00 0.00 0.00 4.81
115 116 3.586618 GCCTCTCTCATATTTCATCCCCT 59.413 47.826 0.00 0.00 0.00 4.79
116 117 4.780021 GCCTCTCTCATATTTCATCCCCTA 59.220 45.833 0.00 0.00 0.00 3.53
117 118 5.104982 GCCTCTCTCATATTTCATCCCCTAG 60.105 48.000 0.00 0.00 0.00 3.02
118 119 6.259893 CCTCTCTCATATTTCATCCCCTAGA 58.740 44.000 0.00 0.00 0.00 2.43
119 120 6.902416 CCTCTCTCATATTTCATCCCCTAGAT 59.098 42.308 0.00 0.00 34.66 1.98
120 121 7.069826 CCTCTCTCATATTTCATCCCCTAGATC 59.930 44.444 0.00 0.00 30.59 2.75
121 122 6.900186 TCTCTCATATTTCATCCCCTAGATCC 59.100 42.308 0.00 0.00 30.59 3.36
122 123 6.574463 TCTCATATTTCATCCCCTAGATCCA 58.426 40.000 0.00 0.00 30.59 3.41
123 124 7.201920 TCTCATATTTCATCCCCTAGATCCAT 58.798 38.462 0.00 0.00 30.59 3.41
124 125 8.354486 TCTCATATTTCATCCCCTAGATCCATA 58.646 37.037 0.00 0.00 30.59 2.74
125 126 8.324191 TCATATTTCATCCCCTAGATCCATAC 57.676 38.462 0.00 0.00 30.59 2.39
126 127 7.906192 TCATATTTCATCCCCTAGATCCATACA 59.094 37.037 0.00 0.00 30.59 2.29
127 128 8.551440 CATATTTCATCCCCTAGATCCATACAA 58.449 37.037 0.00 0.00 30.59 2.41
128 129 6.840090 TTTCATCCCCTAGATCCATACAAA 57.160 37.500 0.00 0.00 30.59 2.83
129 130 6.439636 TTCATCCCCTAGATCCATACAAAG 57.560 41.667 0.00 0.00 30.59 2.77
130 131 4.287067 TCATCCCCTAGATCCATACAAAGC 59.713 45.833 0.00 0.00 30.59 3.51
131 132 3.664320 TCCCCTAGATCCATACAAAGCA 58.336 45.455 0.00 0.00 0.00 3.91
132 133 4.242811 TCCCCTAGATCCATACAAAGCAT 58.757 43.478 0.00 0.00 0.00 3.79
133 134 4.042062 TCCCCTAGATCCATACAAAGCATG 59.958 45.833 0.00 0.00 0.00 4.06
134 135 3.755378 CCCTAGATCCATACAAAGCATGC 59.245 47.826 10.51 10.51 0.00 4.06
135 136 4.392047 CCTAGATCCATACAAAGCATGCA 58.608 43.478 21.98 0.00 0.00 3.96
136 137 4.823442 CCTAGATCCATACAAAGCATGCAA 59.177 41.667 21.98 0.00 0.00 4.08
137 138 5.300034 CCTAGATCCATACAAAGCATGCAAA 59.700 40.000 21.98 0.00 0.00 3.68
138 139 5.258456 AGATCCATACAAAGCATGCAAAG 57.742 39.130 21.98 11.03 0.00 2.77
139 140 4.951715 AGATCCATACAAAGCATGCAAAGA 59.048 37.500 21.98 5.12 0.00 2.52
140 141 5.419788 AGATCCATACAAAGCATGCAAAGAA 59.580 36.000 21.98 2.20 0.00 2.52
141 142 5.465532 TCCATACAAAGCATGCAAAGAAA 57.534 34.783 21.98 0.42 0.00 2.52
142 143 6.040209 TCCATACAAAGCATGCAAAGAAAT 57.960 33.333 21.98 3.04 0.00 2.17
143 144 6.101332 TCCATACAAAGCATGCAAAGAAATC 58.899 36.000 21.98 0.00 0.00 2.17
144 145 5.292589 CCATACAAAGCATGCAAAGAAATCC 59.707 40.000 21.98 0.00 0.00 3.01
145 146 3.667360 ACAAAGCATGCAAAGAAATCCC 58.333 40.909 21.98 0.00 0.00 3.85
146 147 3.325716 ACAAAGCATGCAAAGAAATCCCT 59.674 39.130 21.98 0.00 0.00 4.20
147 148 4.527816 ACAAAGCATGCAAAGAAATCCCTA 59.472 37.500 21.98 0.00 0.00 3.53
148 149 4.725790 AAGCATGCAAAGAAATCCCTAC 57.274 40.909 21.98 0.00 0.00 3.18
149 150 2.684881 AGCATGCAAAGAAATCCCTACG 59.315 45.455 21.98 0.00 0.00 3.51
150 151 2.423538 GCATGCAAAGAAATCCCTACGT 59.576 45.455 14.21 0.00 0.00 3.57
151 152 3.625764 GCATGCAAAGAAATCCCTACGTA 59.374 43.478 14.21 0.00 0.00 3.57
152 153 4.495844 GCATGCAAAGAAATCCCTACGTAC 60.496 45.833 14.21 0.00 0.00 3.67
153 154 4.546829 TGCAAAGAAATCCCTACGTACT 57.453 40.909 0.00 0.00 0.00 2.73
154 155 4.250464 TGCAAAGAAATCCCTACGTACTG 58.750 43.478 0.00 0.00 0.00 2.74
155 156 3.063588 GCAAAGAAATCCCTACGTACTGC 59.936 47.826 0.00 0.00 0.00 4.40
156 157 3.538634 AAGAAATCCCTACGTACTGCC 57.461 47.619 0.00 0.00 0.00 4.85
157 158 1.761198 AGAAATCCCTACGTACTGCCC 59.239 52.381 0.00 0.00 0.00 5.36
158 159 1.761198 GAAATCCCTACGTACTGCCCT 59.239 52.381 0.00 0.00 0.00 5.19
159 160 2.761786 AATCCCTACGTACTGCCCTA 57.238 50.000 0.00 0.00 0.00 3.53
160 161 2.761786 ATCCCTACGTACTGCCCTAA 57.238 50.000 0.00 0.00 0.00 2.69
161 162 1.767759 TCCCTACGTACTGCCCTAAC 58.232 55.000 0.00 0.00 0.00 2.34
162 163 1.285962 TCCCTACGTACTGCCCTAACT 59.714 52.381 0.00 0.00 0.00 2.24
163 164 2.509548 TCCCTACGTACTGCCCTAACTA 59.490 50.000 0.00 0.00 0.00 2.24
164 165 2.883386 CCCTACGTACTGCCCTAACTAG 59.117 54.545 0.00 0.00 0.00 2.57
165 166 3.549794 CCTACGTACTGCCCTAACTAGT 58.450 50.000 0.00 0.00 0.00 2.57
166 167 3.563390 CCTACGTACTGCCCTAACTAGTC 59.437 52.174 0.00 0.00 0.00 2.59
167 168 3.362870 ACGTACTGCCCTAACTAGTCT 57.637 47.619 0.00 0.00 0.00 3.24
168 169 3.694926 ACGTACTGCCCTAACTAGTCTT 58.305 45.455 0.00 0.00 0.00 3.01
169 170 3.693578 ACGTACTGCCCTAACTAGTCTTC 59.306 47.826 0.00 0.00 0.00 2.87
170 171 3.242673 CGTACTGCCCTAACTAGTCTTCG 60.243 52.174 0.00 0.00 0.00 3.79
171 172 2.805194 ACTGCCCTAACTAGTCTTCGT 58.195 47.619 0.00 0.00 0.00 3.85
172 173 2.754002 ACTGCCCTAACTAGTCTTCGTC 59.246 50.000 0.00 0.00 0.00 4.20
173 174 1.741706 TGCCCTAACTAGTCTTCGTCG 59.258 52.381 0.00 0.00 0.00 5.12
174 175 1.742268 GCCCTAACTAGTCTTCGTCGT 59.258 52.381 0.00 0.00 0.00 4.34
175 176 2.223226 GCCCTAACTAGTCTTCGTCGTC 60.223 54.545 0.00 0.00 0.00 4.20
176 177 2.030213 CCCTAACTAGTCTTCGTCGTCG 59.970 54.545 0.00 0.00 38.55 5.12
177 178 2.030213 CCTAACTAGTCTTCGTCGTCGG 59.970 54.545 0.00 0.00 37.69 4.79
178 179 1.800805 AACTAGTCTTCGTCGTCGGA 58.199 50.000 0.00 0.00 37.69 4.55
179 180 1.357907 ACTAGTCTTCGTCGTCGGAG 58.642 55.000 3.79 3.79 43.44 4.63
183 184 1.428219 TCTTCGTCGTCGGAGATGC 59.572 57.895 9.06 0.00 45.42 3.91
184 185 1.586564 CTTCGTCGTCGGAGATGCC 60.587 63.158 4.17 0.00 44.73 4.40
185 186 2.938539 CTTCGTCGTCGGAGATGCCC 62.939 65.000 4.17 0.00 44.73 5.36
186 187 3.822192 CGTCGTCGGAGATGCCCA 61.822 66.667 0.00 0.00 44.51 5.36
187 188 2.202756 GTCGTCGGAGATGCCCAC 60.203 66.667 0.00 0.00 44.51 4.61
188 189 2.678580 TCGTCGGAGATGCCCACA 60.679 61.111 0.00 0.00 44.51 4.17
189 190 2.264480 CGTCGGAGATGCCCACAA 59.736 61.111 0.00 0.00 40.67 3.33
190 191 2.100631 CGTCGGAGATGCCCACAAC 61.101 63.158 0.00 0.00 40.67 3.32
191 192 2.100631 GTCGGAGATGCCCACAACG 61.101 63.158 0.00 0.00 40.67 4.10
192 193 2.264480 CGGAGATGCCCACAACGA 59.736 61.111 0.00 0.00 0.00 3.85
193 194 2.100631 CGGAGATGCCCACAACGAC 61.101 63.158 0.00 0.00 0.00 4.34
194 195 2.100631 GGAGATGCCCACAACGACG 61.101 63.158 0.00 0.00 0.00 5.12
195 196 2.047274 AGATGCCCACAACGACGG 60.047 61.111 0.00 0.00 0.00 4.79
196 197 2.358247 GATGCCCACAACGACGGT 60.358 61.111 0.00 0.00 0.00 4.83
197 198 2.668212 ATGCCCACAACGACGGTG 60.668 61.111 12.24 12.24 36.03 4.94
200 201 3.345808 CCCACAACGACGGTGCTG 61.346 66.667 13.97 10.37 34.94 4.41
201 202 3.345808 CCACAACGACGGTGCTGG 61.346 66.667 13.97 15.51 34.94 4.85
202 203 3.345808 CACAACGACGGTGCTGGG 61.346 66.667 13.97 0.00 0.00 4.45
224 225 3.775654 GGCTGGACGGGTGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
225 226 3.775654 GCTGGACGGGTGAGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
226 227 2.037367 CTGGACGGGTGAGGAGGA 59.963 66.667 0.00 0.00 0.00 3.71
227 228 2.037367 TGGACGGGTGAGGAGGAG 59.963 66.667 0.00 0.00 0.00 3.69
228 229 2.760385 GGACGGGTGAGGAGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
229 230 2.760385 GACGGGTGAGGAGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
231 232 4.787280 CGGGTGAGGAGGAGGGCT 62.787 72.222 0.00 0.00 0.00 5.19
232 233 2.766229 GGGTGAGGAGGAGGGCTC 60.766 72.222 0.00 0.00 0.00 4.70
241 242 3.934962 GGAGGGCTCCGGCTCATC 61.935 72.222 0.00 0.00 42.42 2.92
242 243 3.934962 GAGGGCTCCGGCTCATCC 61.935 72.222 0.00 0.00 42.42 3.51
243 244 4.488911 AGGGCTCCGGCTCATCCT 62.489 66.667 0.00 0.00 42.42 3.24
244 245 3.934962 GGGCTCCGGCTCATCCTC 61.935 72.222 0.00 0.00 39.12 3.71
245 246 3.934962 GGCTCCGGCTCATCCTCC 61.935 72.222 0.00 0.00 38.73 4.30
246 247 2.841988 GCTCCGGCTCATCCTCCT 60.842 66.667 0.00 0.00 35.22 3.69
247 248 2.866726 GCTCCGGCTCATCCTCCTC 61.867 68.421 0.00 0.00 35.22 3.71
248 249 2.519541 TCCGGCTCATCCTCCTCG 60.520 66.667 0.00 0.00 0.00 4.63
249 250 2.835431 CCGGCTCATCCTCCTCGT 60.835 66.667 0.00 0.00 0.00 4.18
250 251 2.415010 CGGCTCATCCTCCTCGTG 59.585 66.667 0.00 0.00 0.00 4.35
251 252 2.107953 GGCTCATCCTCCTCGTGC 59.892 66.667 0.00 0.00 0.00 5.34
252 253 2.430610 GGCTCATCCTCCTCGTGCT 61.431 63.158 0.00 0.00 0.00 4.40
253 254 1.067250 GCTCATCCTCCTCGTGCTC 59.933 63.158 0.00 0.00 0.00 4.26
254 255 1.358402 CTCATCCTCCTCGTGCTCG 59.642 63.158 0.81 0.81 38.55 5.03
255 256 1.077716 TCATCCTCCTCGTGCTCGA 60.078 57.895 10.80 10.80 44.12 4.04
256 257 1.064946 CATCCTCCTCGTGCTCGAC 59.935 63.158 6.80 0.00 41.35 4.20
257 258 2.122167 ATCCTCCTCGTGCTCGACC 61.122 63.158 6.80 0.00 41.35 4.79
258 259 2.559922 ATCCTCCTCGTGCTCGACCT 62.560 60.000 6.80 0.00 41.35 3.85
259 260 2.766400 CCTCCTCGTGCTCGACCTC 61.766 68.421 6.80 0.00 41.35 3.85
260 261 2.033602 TCCTCGTGCTCGACCTCA 59.966 61.111 6.80 0.00 41.35 3.86
261 262 1.378646 TCCTCGTGCTCGACCTCAT 60.379 57.895 6.80 0.00 41.35 2.90
262 263 1.064946 CCTCGTGCTCGACCTCATC 59.935 63.158 6.80 0.00 41.35 2.92
263 264 1.064946 CTCGTGCTCGACCTCATCC 59.935 63.158 6.80 0.00 41.35 3.51
264 265 1.657751 CTCGTGCTCGACCTCATCCA 61.658 60.000 6.80 0.00 41.35 3.41
265 266 1.037579 TCGTGCTCGACCTCATCCAT 61.038 55.000 6.80 0.00 41.35 3.41
266 267 0.873312 CGTGCTCGACCTCATCCATG 60.873 60.000 1.00 0.00 39.71 3.66
267 268 0.176680 GTGCTCGACCTCATCCATGT 59.823 55.000 0.00 0.00 0.00 3.21
268 269 1.409064 GTGCTCGACCTCATCCATGTA 59.591 52.381 0.00 0.00 0.00 2.29
269 270 1.683385 TGCTCGACCTCATCCATGTAG 59.317 52.381 0.00 0.00 0.00 2.74
270 271 1.000283 GCTCGACCTCATCCATGTAGG 60.000 57.143 0.00 0.00 39.47 3.18
271 272 1.000283 CTCGACCTCATCCATGTAGGC 60.000 57.143 0.00 0.00 37.29 3.93
272 273 0.319040 CGACCTCATCCATGTAGGCG 60.319 60.000 0.00 0.00 37.29 5.52
273 274 1.040646 GACCTCATCCATGTAGGCGA 58.959 55.000 0.00 0.00 37.29 5.54
274 275 1.000283 GACCTCATCCATGTAGGCGAG 60.000 57.143 0.00 0.00 36.76 5.03
275 276 0.320247 CCTCATCCATGTAGGCGAGC 60.320 60.000 0.00 0.00 36.09 5.03
276 277 0.390492 CTCATCCATGTAGGCGAGCA 59.610 55.000 0.00 0.00 37.29 4.26
277 278 1.001746 CTCATCCATGTAGGCGAGCAT 59.998 52.381 0.00 0.00 37.29 3.79
278 279 1.001293 TCATCCATGTAGGCGAGCATC 59.999 52.381 0.00 0.00 37.29 3.91
279 280 1.001746 CATCCATGTAGGCGAGCATCT 59.998 52.381 0.00 0.00 37.29 2.90
280 281 1.123077 TCCATGTAGGCGAGCATCTT 58.877 50.000 0.00 0.00 37.29 2.40
281 282 1.069204 TCCATGTAGGCGAGCATCTTC 59.931 52.381 0.00 0.00 37.29 2.87
282 283 1.135046 CATGTAGGCGAGCATCTTCG 58.865 55.000 0.00 0.00 43.23 3.79
283 284 0.747255 ATGTAGGCGAGCATCTTCGT 59.253 50.000 0.00 0.00 42.38 3.85
284 285 0.100682 TGTAGGCGAGCATCTTCGTC 59.899 55.000 0.00 0.00 45.06 4.20
286 287 4.005032 GGCGAGCATCTTCGTCTC 57.995 61.111 0.00 0.00 41.69 3.36
287 288 1.590259 GGCGAGCATCTTCGTCTCC 60.590 63.158 0.00 0.00 41.69 3.71
288 289 1.435515 GCGAGCATCTTCGTCTCCT 59.564 57.895 0.00 0.00 42.38 3.69
289 290 0.593773 GCGAGCATCTTCGTCTCCTC 60.594 60.000 0.00 0.00 42.38 3.71
290 291 0.030101 CGAGCATCTTCGTCTCCTCC 59.970 60.000 0.00 0.00 35.91 4.30
291 292 0.030101 GAGCATCTTCGTCTCCTCCG 59.970 60.000 0.00 0.00 0.00 4.63
292 293 1.590259 GCATCTTCGTCTCCTCCGC 60.590 63.158 0.00 0.00 0.00 5.54
293 294 1.298713 CATCTTCGTCTCCTCCGCG 60.299 63.158 0.00 0.00 0.00 6.46
294 295 2.482333 ATCTTCGTCTCCTCCGCGG 61.482 63.158 22.12 22.12 0.00 6.46
295 296 4.856607 CTTCGTCTCCTCCGCGGC 62.857 72.222 23.51 3.78 0.00 6.53
312 313 4.172512 CCTGCTGCGCCTCCATCT 62.173 66.667 4.18 0.00 0.00 2.90
313 314 2.588314 CTGCTGCGCCTCCATCTC 60.588 66.667 4.18 0.00 0.00 2.75
314 315 4.166888 TGCTGCGCCTCCATCTCC 62.167 66.667 4.18 0.00 0.00 3.71
315 316 3.859414 GCTGCGCCTCCATCTCCT 61.859 66.667 4.18 0.00 0.00 3.69
316 317 2.108566 CTGCGCCTCCATCTCCTG 59.891 66.667 4.18 0.00 0.00 3.86
317 318 4.166888 TGCGCCTCCATCTCCTGC 62.167 66.667 4.18 0.00 0.00 4.85
318 319 4.925861 GCGCCTCCATCTCCTGCC 62.926 72.222 0.00 0.00 0.00 4.85
319 320 4.598894 CGCCTCCATCTCCTGCCG 62.599 72.222 0.00 0.00 0.00 5.69
320 321 4.247380 GCCTCCATCTCCTGCCGG 62.247 72.222 0.00 0.00 0.00 6.13
321 322 4.247380 CCTCCATCTCCTGCCGGC 62.247 72.222 22.73 22.73 0.00 6.13
322 323 4.598894 CTCCATCTCCTGCCGGCG 62.599 72.222 23.90 16.52 0.00 6.46
324 325 4.899239 CCATCTCCTGCCGGCGAC 62.899 72.222 23.90 0.00 0.00 5.19
336 337 4.719369 GGCGACGACGTCTTGCCT 62.719 66.667 28.83 0.00 41.20 4.75
337 338 3.173240 GCGACGACGTCTTGCCTC 61.173 66.667 24.36 0.00 41.98 4.70
338 339 2.504244 CGACGACGTCTTGCCTCC 60.504 66.667 24.36 0.00 34.56 4.30
339 340 2.504244 GACGACGTCTTGCCTCCG 60.504 66.667 20.52 0.21 0.00 4.63
340 341 4.719369 ACGACGTCTTGCCTCCGC 62.719 66.667 14.70 0.00 0.00 5.54
341 342 4.717629 CGACGTCTTGCCTCCGCA 62.718 66.667 14.70 0.00 45.49 5.69
362 363 4.021925 GACTCCGGGCAAGGCAGT 62.022 66.667 0.00 0.00 0.00 4.40
363 364 3.959991 GACTCCGGGCAAGGCAGTC 62.960 68.421 0.00 0.80 0.00 3.51
366 367 4.473520 CCGGGCAAGGCAGTCGAT 62.474 66.667 0.00 0.00 0.00 3.59
367 368 2.436646 CGGGCAAGGCAGTCGATT 60.437 61.111 0.00 0.00 0.00 3.34
368 369 2.040544 CGGGCAAGGCAGTCGATTT 61.041 57.895 0.00 0.00 0.00 2.17
369 370 0.742990 CGGGCAAGGCAGTCGATTTA 60.743 55.000 0.00 0.00 0.00 1.40
370 371 1.459450 GGGCAAGGCAGTCGATTTAA 58.541 50.000 0.00 0.00 0.00 1.52
371 372 1.816224 GGGCAAGGCAGTCGATTTAAA 59.184 47.619 0.00 0.00 0.00 1.52
372 373 2.427095 GGGCAAGGCAGTCGATTTAAAT 59.573 45.455 0.00 0.00 0.00 1.40
373 374 3.630312 GGGCAAGGCAGTCGATTTAAATA 59.370 43.478 0.00 0.00 0.00 1.40
374 375 4.261197 GGGCAAGGCAGTCGATTTAAATAG 60.261 45.833 0.00 0.92 0.00 1.73
375 376 4.282873 GCAAGGCAGTCGATTTAAATAGC 58.717 43.478 0.00 1.25 0.00 2.97
376 377 4.789802 GCAAGGCAGTCGATTTAAATAGCC 60.790 45.833 14.98 14.98 41.08 3.93
377 378 3.131396 AGGCAGTCGATTTAAATAGCCG 58.869 45.455 16.00 10.31 45.19 5.52
378 379 2.223377 GGCAGTCGATTTAAATAGCCGG 59.777 50.000 0.00 0.00 0.00 6.13
379 380 2.223377 GCAGTCGATTTAAATAGCCGGG 59.777 50.000 2.18 0.00 0.00 5.73
380 381 2.223377 CAGTCGATTTAAATAGCCGGGC 59.777 50.000 12.11 12.11 0.00 6.13
381 382 2.158871 AGTCGATTTAAATAGCCGGGCA 60.159 45.455 23.09 7.74 0.00 5.36
382 383 2.614983 GTCGATTTAAATAGCCGGGCAA 59.385 45.455 23.09 5.66 0.00 4.52
383 384 2.875933 TCGATTTAAATAGCCGGGCAAG 59.124 45.455 23.09 0.00 0.00 4.01
384 385 2.031157 CGATTTAAATAGCCGGGCAAGG 60.031 50.000 23.09 0.00 0.00 3.61
413 414 4.790962 CCGCCAGAGCTGCACCAT 62.791 66.667 1.02 0.00 36.60 3.55
414 415 3.506096 CGCCAGAGCTGCACCATG 61.506 66.667 1.02 0.00 36.60 3.66
415 416 3.823330 GCCAGAGCTGCACCATGC 61.823 66.667 1.02 0.00 45.29 4.06
441 442 3.507009 CGGTCCGACGGAGGAGAC 61.507 72.222 18.98 5.37 41.68 3.36
442 443 3.507009 GGTCCGACGGAGGAGACG 61.507 72.222 18.98 0.00 41.68 4.18
443 444 2.435586 GTCCGACGGAGGAGACGA 60.436 66.667 18.98 0.00 41.68 4.20
444 445 2.125229 TCCGACGGAGGAGACGAG 60.125 66.667 13.88 0.00 34.92 4.18
445 446 2.436292 CCGACGGAGGAGACGAGT 60.436 66.667 8.64 0.00 34.93 4.18
446 447 2.039405 CCGACGGAGGAGACGAGTT 61.039 63.158 8.64 0.00 34.93 3.01
447 448 1.584380 CCGACGGAGGAGACGAGTTT 61.584 60.000 8.64 0.00 34.93 2.66
448 449 0.240411 CGACGGAGGAGACGAGTTTT 59.760 55.000 0.00 0.00 34.93 2.43
449 450 1.699343 GACGGAGGAGACGAGTTTTG 58.301 55.000 0.00 0.00 34.93 2.44
450 451 0.317479 ACGGAGGAGACGAGTTTTGG 59.683 55.000 0.00 0.00 34.93 3.28
451 452 0.601558 CGGAGGAGACGAGTTTTGGA 59.398 55.000 0.00 0.00 0.00 3.53
452 453 1.669211 CGGAGGAGACGAGTTTTGGAC 60.669 57.143 0.00 0.00 0.00 4.02
453 454 1.337917 GGAGGAGACGAGTTTTGGACC 60.338 57.143 0.00 0.00 0.00 4.46
454 455 0.317479 AGGAGACGAGTTTTGGACCG 59.683 55.000 0.00 0.00 0.00 4.79
455 456 1.289800 GGAGACGAGTTTTGGACCGC 61.290 60.000 0.00 0.00 0.00 5.68
456 457 1.289800 GAGACGAGTTTTGGACCGCC 61.290 60.000 0.00 0.00 0.00 6.13
457 458 2.663852 ACGAGTTTTGGACCGCCG 60.664 61.111 0.00 0.00 36.79 6.46
458 459 3.419759 CGAGTTTTGGACCGCCGG 61.420 66.667 0.00 0.00 36.79 6.13
459 460 3.053896 GAGTTTTGGACCGCCGGG 61.054 66.667 8.57 0.00 36.79 5.73
472 473 2.596338 CCGGGTTTGAGGGCGTTT 60.596 61.111 0.00 0.00 0.00 3.60
473 474 2.197605 CCGGGTTTGAGGGCGTTTT 61.198 57.895 0.00 0.00 0.00 2.43
474 475 1.284715 CGGGTTTGAGGGCGTTTTC 59.715 57.895 0.00 0.00 0.00 2.29
486 487 4.391869 GTTTTCGACTGGGACCCC 57.608 61.111 8.45 2.69 0.00 4.95
487 488 1.759236 GTTTTCGACTGGGACCCCT 59.241 57.895 8.45 0.00 36.94 4.79
488 489 0.109913 GTTTTCGACTGGGACCCCTT 59.890 55.000 8.45 0.00 36.94 3.95
489 490 0.399075 TTTTCGACTGGGACCCCTTC 59.601 55.000 8.45 3.03 36.94 3.46
490 491 1.823169 TTTCGACTGGGACCCCTTCG 61.823 60.000 20.19 20.19 40.90 3.79
491 492 4.452733 CGACTGGGACCCCTTCGC 62.453 72.222 15.83 0.00 36.24 4.70
492 493 4.097361 GACTGGGACCCCTTCGCC 62.097 72.222 8.45 0.00 36.30 5.54
493 494 4.974438 ACTGGGACCCCTTCGCCA 62.974 66.667 8.45 0.00 36.30 5.69
494 495 4.101448 CTGGGACCCCTTCGCCAG 62.101 72.222 8.45 0.00 36.75 4.85
495 496 4.974438 TGGGACCCCTTCGCCAGT 62.974 66.667 8.45 0.00 36.30 4.00
496 497 4.097361 GGGACCCCTTCGCCAGTC 62.097 72.222 0.00 0.00 0.00 3.51
497 498 3.003763 GGACCCCTTCGCCAGTCT 61.004 66.667 0.00 0.00 0.00 3.24
498 499 2.266055 GACCCCTTCGCCAGTCTG 59.734 66.667 0.00 0.00 0.00 3.51
499 500 2.203788 ACCCCTTCGCCAGTCTGA 60.204 61.111 0.00 0.00 0.00 3.27
500 501 2.266055 CCCCTTCGCCAGTCTGAC 59.734 66.667 0.00 0.00 0.00 3.51
501 502 2.125912 CCCTTCGCCAGTCTGACG 60.126 66.667 1.61 1.61 0.00 4.35
502 503 2.651361 CCTTCGCCAGTCTGACGT 59.349 61.111 8.46 0.00 0.00 4.34
503 504 1.734477 CCTTCGCCAGTCTGACGTG 60.734 63.158 8.46 3.39 0.00 4.49
504 505 1.734477 CTTCGCCAGTCTGACGTGG 60.734 63.158 16.91 16.91 36.85 4.94
508 509 2.126307 CCAGTCTGACGTGGCGAG 60.126 66.667 0.00 0.00 0.00 5.03
509 510 2.807045 CAGTCTGACGTGGCGAGC 60.807 66.667 0.00 0.00 0.00 5.03
510 511 4.406173 AGTCTGACGTGGCGAGCG 62.406 66.667 0.00 0.00 0.00 5.03
511 512 4.702081 GTCTGACGTGGCGAGCGT 62.702 66.667 0.00 1.45 45.86 5.07
512 513 4.700365 TCTGACGTGGCGAGCGTG 62.700 66.667 0.00 0.00 43.04 5.34
532 533 3.542676 CGGGCGCCCACATACCTA 61.543 66.667 42.78 0.00 35.37 3.08
533 534 2.110420 GGGCGCCCACATACCTAC 59.890 66.667 40.73 8.62 35.81 3.18
534 535 2.110420 GGCGCCCACATACCTACC 59.890 66.667 18.11 0.00 0.00 3.18
535 536 2.110420 GCGCCCACATACCTACCC 59.890 66.667 0.00 0.00 0.00 3.69
536 537 2.826702 CGCCCACATACCTACCCC 59.173 66.667 0.00 0.00 0.00 4.95
537 538 2.067605 CGCCCACATACCTACCCCA 61.068 63.158 0.00 0.00 0.00 4.96
538 539 1.415672 CGCCCACATACCTACCCCAT 61.416 60.000 0.00 0.00 0.00 4.00
539 540 1.737199 GCCCACATACCTACCCCATA 58.263 55.000 0.00 0.00 0.00 2.74
540 541 2.275466 GCCCACATACCTACCCCATAT 58.725 52.381 0.00 0.00 0.00 1.78
541 542 2.647802 GCCCACATACCTACCCCATATT 59.352 50.000 0.00 0.00 0.00 1.28
542 543 3.075432 GCCCACATACCTACCCCATATTT 59.925 47.826 0.00 0.00 0.00 1.40
543 544 4.662278 CCCACATACCTACCCCATATTTG 58.338 47.826 0.00 0.00 0.00 2.32
544 545 4.508405 CCCACATACCTACCCCATATTTGG 60.508 50.000 0.00 0.00 43.23 3.28
557 558 4.275810 CCATATTTGGGCTGGATATGAGG 58.724 47.826 12.68 0.00 39.56 3.86
558 559 2.299326 ATTTGGGCTGGATATGAGGC 57.701 50.000 0.00 0.00 35.29 4.70
559 560 0.179020 TTTGGGCTGGATATGAGGCG 60.179 55.000 0.00 0.00 36.87 5.52
560 561 1.344953 TTGGGCTGGATATGAGGCGT 61.345 55.000 0.00 0.00 36.87 5.68
561 562 1.302033 GGGCTGGATATGAGGCGTG 60.302 63.158 0.00 0.00 36.87 5.34
562 563 1.963338 GGCTGGATATGAGGCGTGC 60.963 63.158 0.00 0.00 0.00 5.34
563 564 1.963338 GCTGGATATGAGGCGTGCC 60.963 63.158 1.67 1.67 0.00 5.01
564 565 1.447217 CTGGATATGAGGCGTGCCA 59.553 57.895 14.29 0.00 38.92 4.92
565 566 0.602106 CTGGATATGAGGCGTGCCAG 60.602 60.000 14.29 0.00 38.92 4.85
566 567 1.337384 TGGATATGAGGCGTGCCAGT 61.337 55.000 14.29 0.82 38.92 4.00
567 568 0.601311 GGATATGAGGCGTGCCAGTC 60.601 60.000 14.29 3.33 38.92 3.51
568 569 0.104855 GATATGAGGCGTGCCAGTCA 59.895 55.000 14.29 9.42 38.92 3.41
569 570 0.541392 ATATGAGGCGTGCCAGTCAA 59.459 50.000 14.29 1.43 38.92 3.18
570 571 0.391130 TATGAGGCGTGCCAGTCAAC 60.391 55.000 14.29 0.00 38.92 3.18
571 572 3.050275 GAGGCGTGCCAGTCAACC 61.050 66.667 14.29 0.00 38.92 3.77
572 573 4.643387 AGGCGTGCCAGTCAACCC 62.643 66.667 14.29 0.00 38.92 4.11
575 576 4.308458 CGTGCCAGTCAACCCGGA 62.308 66.667 0.73 0.00 0.00 5.14
576 577 2.668550 GTGCCAGTCAACCCGGAC 60.669 66.667 0.73 0.00 38.08 4.79
577 578 4.308458 TGCCAGTCAACCCGGACG 62.308 66.667 0.73 0.00 42.62 4.79
578 579 4.309950 GCCAGTCAACCCGGACGT 62.310 66.667 0.73 0.00 42.62 4.34
579 580 2.424302 CCAGTCAACCCGGACGTT 59.576 61.111 0.73 0.00 42.62 3.99
580 581 1.227734 CCAGTCAACCCGGACGTTT 60.228 57.895 0.73 0.00 42.62 3.60
581 582 1.503818 CCAGTCAACCCGGACGTTTG 61.504 60.000 0.73 0.36 42.62 2.93
582 583 0.531090 CAGTCAACCCGGACGTTTGA 60.531 55.000 0.73 3.13 42.62 2.69
583 584 0.249741 AGTCAACCCGGACGTTTGAG 60.250 55.000 0.73 0.00 42.62 3.02
584 585 1.070105 TCAACCCGGACGTTTGAGG 59.930 57.895 0.73 0.00 0.00 3.86
589 590 4.675029 CGGACGTTTGAGGGCCGT 62.675 66.667 0.00 0.00 37.35 5.68
590 591 2.281276 GGACGTTTGAGGGCCGTT 60.281 61.111 0.00 0.00 34.51 4.44
591 592 1.895231 GGACGTTTGAGGGCCGTTT 60.895 57.895 0.00 0.00 34.51 3.60
592 593 1.281656 GACGTTTGAGGGCCGTTTG 59.718 57.895 0.00 0.00 34.51 2.93
593 594 1.153127 ACGTTTGAGGGCCGTTTGA 60.153 52.632 0.00 0.00 0.00 2.69
594 595 1.164041 ACGTTTGAGGGCCGTTTGAG 61.164 55.000 0.00 0.00 0.00 3.02
595 596 1.852067 CGTTTGAGGGCCGTTTGAGG 61.852 60.000 0.00 0.00 0.00 3.86
603 604 3.110178 CCGTTTGAGGCGTCCGTC 61.110 66.667 3.56 0.00 0.00 4.79
604 605 2.049433 CGTTTGAGGCGTCCGTCT 60.049 61.111 3.56 0.00 0.00 4.18
605 606 2.372690 CGTTTGAGGCGTCCGTCTG 61.373 63.158 0.00 0.00 0.00 3.51
606 607 2.027625 GTTTGAGGCGTCCGTCTGG 61.028 63.158 0.00 0.00 0.00 3.86
607 608 3.234630 TTTGAGGCGTCCGTCTGGG 62.235 63.158 0.00 0.00 35.24 4.45
608 609 4.988716 TGAGGCGTCCGTCTGGGT 62.989 66.667 0.00 0.00 37.00 4.51
609 610 3.692406 GAGGCGTCCGTCTGGGTT 61.692 66.667 0.00 0.00 37.00 4.11
610 611 2.283388 AGGCGTCCGTCTGGGTTA 60.283 61.111 0.00 0.00 37.00 2.85
611 612 1.880819 GAGGCGTCCGTCTGGGTTAA 61.881 60.000 0.00 0.00 37.00 2.01
612 613 1.004679 GGCGTCCGTCTGGGTTAAA 60.005 57.895 0.00 0.00 37.00 1.52
613 614 0.603439 GGCGTCCGTCTGGGTTAAAA 60.603 55.000 0.00 0.00 37.00 1.52
614 615 1.228533 GCGTCCGTCTGGGTTAAAAA 58.771 50.000 0.00 0.00 37.00 1.94
632 633 2.631160 AAAATGTGACCGGTCAGTGA 57.369 45.000 37.04 23.42 40.75 3.41
633 634 1.878953 AAATGTGACCGGTCAGTGAC 58.121 50.000 37.04 24.72 40.75 3.67
659 660 3.150949 CCGCCTGGGCATATGAGA 58.849 61.111 6.97 0.00 42.06 3.27
660 661 1.302033 CCGCCTGGGCATATGAGAC 60.302 63.158 6.97 0.00 42.06 3.36
661 662 1.665916 CGCCTGGGCATATGAGACG 60.666 63.158 6.97 0.00 42.06 4.18
662 663 1.302033 GCCTGGGCATATGAGACGG 60.302 63.158 6.97 2.17 41.49 4.79
663 664 1.372683 CCTGGGCATATGAGACGGG 59.627 63.158 6.97 6.08 0.00 5.28
664 665 1.410850 CCTGGGCATATGAGACGGGT 61.411 60.000 6.97 0.00 0.00 5.28
665 666 0.469917 CTGGGCATATGAGACGGGTT 59.530 55.000 6.97 0.00 0.00 4.11
666 667 0.916086 TGGGCATATGAGACGGGTTT 59.084 50.000 6.97 0.00 0.00 3.27
667 668 2.104111 CTGGGCATATGAGACGGGTTTA 59.896 50.000 6.97 0.00 0.00 2.01
668 669 2.506231 TGGGCATATGAGACGGGTTTAA 59.494 45.455 6.97 0.00 0.00 1.52
669 670 3.139077 GGGCATATGAGACGGGTTTAAG 58.861 50.000 6.97 0.00 0.00 1.85
670 671 3.139077 GGCATATGAGACGGGTTTAAGG 58.861 50.000 6.97 0.00 0.00 2.69
671 672 2.548480 GCATATGAGACGGGTTTAAGGC 59.452 50.000 6.97 0.00 0.00 4.35
672 673 2.589798 TATGAGACGGGTTTAAGGCG 57.410 50.000 0.00 0.00 0.00 5.52
673 674 0.611714 ATGAGACGGGTTTAAGGCGT 59.388 50.000 0.00 0.00 0.00 5.68
674 675 0.037975 TGAGACGGGTTTAAGGCGTC 60.038 55.000 0.00 0.00 0.00 5.19
675 676 0.738762 GAGACGGGTTTAAGGCGTCC 60.739 60.000 0.00 0.00 0.00 4.79
676 677 2.047939 ACGGGTTTAAGGCGTCCG 60.048 61.111 2.33 2.33 45.42 4.79
677 678 2.816520 CGGGTTTAAGGCGTCCGG 60.817 66.667 0.00 0.00 37.35 5.14
678 679 3.129502 GGGTTTAAGGCGTCCGGC 61.130 66.667 4.96 4.96 42.51 6.13
686 687 2.279517 GGCGTCCGGCTGTAGATG 60.280 66.667 5.95 0.00 42.94 2.90
687 688 2.494918 GCGTCCGGCTGTAGATGT 59.505 61.111 0.00 0.00 39.11 3.06
688 689 1.153628 GCGTCCGGCTGTAGATGTT 60.154 57.895 0.00 0.00 39.11 2.71
689 690 1.146358 GCGTCCGGCTGTAGATGTTC 61.146 60.000 0.00 0.00 39.11 3.18
690 691 0.456221 CGTCCGGCTGTAGATGTTCT 59.544 55.000 0.00 0.00 0.00 3.01
691 692 1.135083 CGTCCGGCTGTAGATGTTCTT 60.135 52.381 0.00 0.00 0.00 2.52
692 693 2.541556 GTCCGGCTGTAGATGTTCTTC 58.458 52.381 0.00 0.00 0.00 2.87
693 694 1.480954 TCCGGCTGTAGATGTTCTTCC 59.519 52.381 0.00 0.00 0.00 3.46
694 695 1.482593 CCGGCTGTAGATGTTCTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
695 696 2.693591 CCGGCTGTAGATGTTCTTCCTA 59.306 50.000 0.00 0.00 0.00 2.94
696 697 3.132289 CCGGCTGTAGATGTTCTTCCTAA 59.868 47.826 0.00 0.00 0.00 2.69
715 716 7.633018 TCCTAATAAATTCCTACTGGAGCAT 57.367 36.000 0.00 0.00 44.24 3.79
725 726 2.100605 ACTGGAGCATCGTTTCCTTC 57.899 50.000 0.00 0.00 34.37 3.46
783 784 1.001974 GGACCCCACATTTTTGAAGGC 59.998 52.381 0.00 0.00 0.00 4.35
905 911 6.276847 CCGATCTTCTGCACTACTAATTCTT 58.723 40.000 0.00 0.00 0.00 2.52
912 918 7.435068 TCTGCACTACTAATTCTTTTGGAAC 57.565 36.000 0.00 0.00 36.70 3.62
929 941 1.908066 AACTTCGCCAATCCGAACGC 61.908 55.000 0.00 0.00 41.75 4.84
955 967 3.873910 TCGGTTCAGATCCTCCATTTTC 58.126 45.455 0.00 0.00 0.00 2.29
1117 1135 2.743928 GTCTGCACGAAGCCCCTG 60.744 66.667 0.00 0.00 44.83 4.45
1321 1339 0.721718 CGACGAATCTTGGACTTGGC 59.278 55.000 0.00 0.00 0.00 4.52
1342 1360 1.402852 GGCGGAGAAACTGAAAATGCC 60.403 52.381 0.00 0.00 0.00 4.40
1417 1438 1.546923 TCCATCGCTTACACGGAGAAA 59.453 47.619 0.00 0.00 0.00 2.52
1481 1502 1.833630 AGATCAGATGGCCGTCAAGAA 59.166 47.619 26.70 9.17 0.00 2.52
1550 1571 0.868406 GACACAGAAGAACAAGCCCG 59.132 55.000 0.00 0.00 0.00 6.13
1604 1625 1.338105 CGGAGCTCCAACATGAGTTCA 60.338 52.381 31.67 0.00 42.44 3.18
1681 1702 1.372251 CGACGCAGCTTCAGACTGT 60.372 57.895 1.59 0.00 37.47 3.55
1945 1966 1.439529 CGAGTCGATGATCGCCGAG 60.440 63.158 10.45 0.00 40.21 4.63
1985 2006 3.214328 GAGAACTGGAAACCAAAGCTCA 58.786 45.455 0.00 0.00 30.80 4.26
2054 2075 5.180117 AGTCCAGATGTTGTTTTCTGAATCG 59.820 40.000 1.63 0.00 41.53 3.34
2055 2076 4.083324 TCCAGATGTTGTTTTCTGAATCGC 60.083 41.667 1.63 0.00 41.53 4.58
2120 3593 4.801330 ATGGAGTACATGTTCTCGTTGA 57.199 40.909 21.75 9.50 38.70 3.18
2175 3648 9.654663 AGTTTATGGTTTAGCAAGTAGTCTTAG 57.345 33.333 0.00 0.00 32.07 2.18
2218 3691 1.077212 CTGCTACATGGCAAGCCCT 60.077 57.895 8.89 0.00 41.94 5.19
2219 3692 0.682209 CTGCTACATGGCAAGCCCTT 60.682 55.000 8.89 0.00 41.94 3.95
2410 3883 3.112075 CGCGTGCGTGGAGTTGAT 61.112 61.111 6.00 0.00 34.35 2.57
2426 3899 3.262660 AGTTGATGATCTTCAGCTCACCA 59.737 43.478 18.46 0.00 32.45 4.17
2438 3911 1.538687 GCTCACCATGCCCAAAGCTT 61.539 55.000 0.00 0.00 44.23 3.74
2477 3950 1.557832 CAGAGGGGTTTCGGGTTATGA 59.442 52.381 0.00 0.00 0.00 2.15
2520 3998 4.103785 AGGCATTCAATCTAGTGGCACTAT 59.896 41.667 26.39 12.31 39.35 2.12
2529 4007 5.122512 TCTAGTGGCACTATAGCGATTTC 57.877 43.478 26.39 0.00 34.64 2.17
2532 4010 3.120792 GTGGCACTATAGCGATTTCGAA 58.879 45.455 11.13 0.00 43.02 3.71
2534 4012 4.211374 GTGGCACTATAGCGATTTCGAATT 59.789 41.667 11.13 0.00 43.02 2.17
2535 4013 4.211164 TGGCACTATAGCGATTTCGAATTG 59.789 41.667 0.00 0.00 43.02 2.32
2538 4016 5.612709 GCACTATAGCGATTTCGAATTGGAC 60.613 44.000 0.00 0.00 43.02 4.02
2540 4018 1.722011 AGCGATTTCGAATTGGACGT 58.278 45.000 0.00 0.00 43.02 4.34
2541 4019 1.393539 AGCGATTTCGAATTGGACGTG 59.606 47.619 0.00 0.00 43.02 4.49
2549 4027 5.676532 TTCGAATTGGACGTGTTAACAAT 57.323 34.783 10.51 1.10 35.24 2.71
2557 4035 3.306502 GGACGTGTTAACAATGAGGAGGA 60.307 47.826 10.51 0.00 0.00 3.71
2558 4036 3.926616 ACGTGTTAACAATGAGGAGGAG 58.073 45.455 10.51 0.00 0.00 3.69
2559 4037 3.262420 CGTGTTAACAATGAGGAGGAGG 58.738 50.000 10.51 0.00 0.00 4.30
2560 4038 3.056107 CGTGTTAACAATGAGGAGGAGGA 60.056 47.826 10.51 0.00 0.00 3.71
2602 4080 0.037590 CTTCCCGGTTTCCACCATCA 59.962 55.000 0.00 0.00 44.53 3.07
2605 4083 1.074072 CCGGTTTCCACCATCACCA 59.926 57.895 0.00 0.00 44.53 4.17
2733 4211 2.223433 GCCAGAGGCTCAAATTTGATCG 60.223 50.000 20.76 11.62 46.69 3.69
2901 4379 1.662517 TGCTGTTATACCATGGCACG 58.337 50.000 13.04 2.20 0.00 5.34
2922 4400 0.593128 GCAACAGAACAACGAGCCAT 59.407 50.000 0.00 0.00 0.00 4.40
2957 4435 6.983906 TCTATCTATGTTGGCAAGATCAGA 57.016 37.500 13.67 14.05 32.39 3.27
2989 4467 4.094590 CAGAAAAGATGGTCATCTGTCAGC 59.905 45.833 13.49 3.28 46.75 4.26
2990 4468 2.706339 AAGATGGTCATCTGTCAGCC 57.294 50.000 13.49 0.00 46.75 4.85
3004 4482 3.288809 GTCAGCCAAAATGACAAGGAC 57.711 47.619 1.37 0.00 45.18 3.85
3007 4485 1.880027 AGCCAAAATGACAAGGACGAC 59.120 47.619 0.00 0.00 0.00 4.34
3015 4493 5.924475 AATGACAAGGACGACTTAACTTG 57.076 39.130 0.00 0.00 44.32 3.16
3026 4504 4.620184 ACGACTTAACTTGTAAGCTAAGCG 59.380 41.667 18.58 18.58 37.92 4.68
3043 4521 1.997606 AGCGCATCGTGTTTAAGGTAC 59.002 47.619 11.47 0.00 0.00 3.34
3057 4538 7.658575 GTGTTTAAGGTACAGAAGAATACACCA 59.341 37.037 0.00 0.00 0.00 4.17
3058 4539 7.876068 TGTTTAAGGTACAGAAGAATACACCAG 59.124 37.037 0.00 0.00 0.00 4.00
3061 4542 3.197983 GGTACAGAAGAATACACCAGCCT 59.802 47.826 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279935 ATTTGCCAAGTCCGGTTGTA 57.720 45.000 0.00 0.00 0.00 2.41
1 2 1.339929 GAATTTGCCAAGTCCGGTTGT 59.660 47.619 0.00 0.00 0.00 3.32
2 3 1.665735 CGAATTTGCCAAGTCCGGTTG 60.666 52.381 0.00 0.00 0.00 3.77
3 4 0.596082 CGAATTTGCCAAGTCCGGTT 59.404 50.000 0.00 0.00 0.00 4.44
4 5 1.241315 CCGAATTTGCCAAGTCCGGT 61.241 55.000 0.00 0.00 0.00 5.28
5 6 1.506262 CCGAATTTGCCAAGTCCGG 59.494 57.895 0.00 0.00 0.00 5.14
6 7 1.154035 GCCGAATTTGCCAAGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
7 8 4.889427 GCCGAATTTGCCAAGTCC 57.111 55.556 0.00 0.00 0.00 3.85
14 15 1.155889 CTTTTTGGGGCCGAATTTGC 58.844 50.000 0.48 0.00 0.00 3.68
15 16 1.155889 GCTTTTTGGGGCCGAATTTG 58.844 50.000 0.48 0.00 0.00 2.32
16 17 0.036164 GGCTTTTTGGGGCCGAATTT 59.964 50.000 0.48 0.00 38.91 1.82
17 18 1.676968 GGCTTTTTGGGGCCGAATT 59.323 52.632 0.48 0.00 38.91 2.17
18 19 3.387716 GGCTTTTTGGGGCCGAAT 58.612 55.556 0.48 0.00 38.91 3.34
24 25 3.747976 CTCGCGGGCTTTTTGGGG 61.748 66.667 6.13 0.00 0.00 4.96
25 26 4.419939 GCTCGCGGGCTTTTTGGG 62.420 66.667 26.87 0.00 0.00 4.12
26 27 4.759096 CGCTCGCGGGCTTTTTGG 62.759 66.667 30.72 8.35 35.56 3.28
59 60 2.472414 TAATTTGAGGCGTGCCCGGT 62.472 55.000 7.39 0.00 39.21 5.28
60 61 1.714899 CTAATTTGAGGCGTGCCCGG 61.715 60.000 7.39 0.00 39.21 5.73
61 62 1.721487 CTAATTTGAGGCGTGCCCG 59.279 57.895 7.39 0.00 39.21 6.13
62 63 1.433471 GCTAATTTGAGGCGTGCCC 59.567 57.895 7.39 0.00 36.58 5.36
63 64 1.312371 TGGCTAATTTGAGGCGTGCC 61.312 55.000 1.67 1.67 44.78 5.01
64 65 0.179163 GTGGCTAATTTGAGGCGTGC 60.179 55.000 0.00 0.00 44.78 5.34
65 66 1.453155 AGTGGCTAATTTGAGGCGTG 58.547 50.000 0.00 0.00 44.78 5.34
66 67 2.200373 AAGTGGCTAATTTGAGGCGT 57.800 45.000 0.00 0.00 44.78 5.68
67 68 2.867429 CAAAGTGGCTAATTTGAGGCG 58.133 47.619 16.79 0.00 42.72 5.52
68 69 2.029110 TGCAAAGTGGCTAATTTGAGGC 60.029 45.455 24.44 11.27 42.72 4.70
69 70 3.940209 TGCAAAGTGGCTAATTTGAGG 57.060 42.857 24.44 1.10 42.72 3.86
70 71 4.427312 GGATGCAAAGTGGCTAATTTGAG 58.573 43.478 24.44 1.81 42.72 3.02
71 72 3.119531 CGGATGCAAAGTGGCTAATTTGA 60.120 43.478 24.44 11.30 42.72 2.69
72 73 3.181397 CGGATGCAAAGTGGCTAATTTG 58.819 45.455 17.34 17.34 42.90 2.32
73 74 2.417243 GCGGATGCAAAGTGGCTAATTT 60.417 45.455 0.00 0.00 42.15 1.82
74 75 1.134946 GCGGATGCAAAGTGGCTAATT 59.865 47.619 0.00 0.00 42.15 1.40
75 76 0.740737 GCGGATGCAAAGTGGCTAAT 59.259 50.000 0.00 0.00 42.15 1.73
76 77 1.312371 GGCGGATGCAAAGTGGCTAA 61.312 55.000 0.00 0.00 45.35 3.09
77 78 1.748879 GGCGGATGCAAAGTGGCTA 60.749 57.895 0.00 0.00 45.35 3.93
78 79 3.064324 GGCGGATGCAAAGTGGCT 61.064 61.111 0.00 0.00 45.35 4.75
79 80 3.056313 GAGGCGGATGCAAAGTGGC 62.056 63.158 0.00 0.00 45.35 5.01
80 81 1.372087 GAGAGGCGGATGCAAAGTGG 61.372 60.000 0.00 0.00 45.35 4.00
81 82 0.392193 AGAGAGGCGGATGCAAAGTG 60.392 55.000 0.00 0.00 45.35 3.16
82 83 0.107945 GAGAGAGGCGGATGCAAAGT 60.108 55.000 0.00 0.00 45.35 2.66
83 84 0.107993 TGAGAGAGGCGGATGCAAAG 60.108 55.000 0.00 0.00 45.35 2.77
84 85 0.543277 ATGAGAGAGGCGGATGCAAA 59.457 50.000 0.00 0.00 45.35 3.68
85 86 1.413118 TATGAGAGAGGCGGATGCAA 58.587 50.000 0.00 0.00 45.35 4.08
86 87 1.637338 ATATGAGAGAGGCGGATGCA 58.363 50.000 0.00 0.00 45.35 3.96
87 88 2.758736 AATATGAGAGAGGCGGATGC 57.241 50.000 0.00 0.00 41.71 3.91
88 89 4.263018 TGAAATATGAGAGAGGCGGATG 57.737 45.455 0.00 0.00 0.00 3.51
89 90 4.081198 GGATGAAATATGAGAGAGGCGGAT 60.081 45.833 0.00 0.00 0.00 4.18
90 91 3.259374 GGATGAAATATGAGAGAGGCGGA 59.741 47.826 0.00 0.00 0.00 5.54
91 92 3.594134 GGATGAAATATGAGAGAGGCGG 58.406 50.000 0.00 0.00 0.00 6.13
92 93 3.594134 GGGATGAAATATGAGAGAGGCG 58.406 50.000 0.00 0.00 0.00 5.52
93 94 3.586618 AGGGGATGAAATATGAGAGAGGC 59.413 47.826 0.00 0.00 0.00 4.70
94 95 6.259893 TCTAGGGGATGAAATATGAGAGAGG 58.740 44.000 0.00 0.00 0.00 3.69
95 96 7.069826 GGATCTAGGGGATGAAATATGAGAGAG 59.930 44.444 0.00 0.00 34.33 3.20
96 97 6.900186 GGATCTAGGGGATGAAATATGAGAGA 59.100 42.308 0.00 0.00 34.33 3.10
97 98 6.671340 TGGATCTAGGGGATGAAATATGAGAG 59.329 42.308 0.00 0.00 34.33 3.20
98 99 6.574463 TGGATCTAGGGGATGAAATATGAGA 58.426 40.000 0.00 0.00 34.33 3.27
99 100 6.881067 TGGATCTAGGGGATGAAATATGAG 57.119 41.667 0.00 0.00 34.33 2.90
100 101 7.906192 TGTATGGATCTAGGGGATGAAATATGA 59.094 37.037 0.00 0.00 34.33 2.15
101 102 8.094284 TGTATGGATCTAGGGGATGAAATATG 57.906 38.462 0.00 0.00 34.33 1.78
102 103 8.700145 TTGTATGGATCTAGGGGATGAAATAT 57.300 34.615 0.00 0.00 34.33 1.28
103 104 8.518720 TTTGTATGGATCTAGGGGATGAAATA 57.481 34.615 0.00 0.00 34.33 1.40
104 105 7.406620 TTTGTATGGATCTAGGGGATGAAAT 57.593 36.000 0.00 0.00 34.33 2.17
105 106 6.691491 GCTTTGTATGGATCTAGGGGATGAAA 60.691 42.308 0.00 0.00 34.33 2.69
106 107 5.221925 GCTTTGTATGGATCTAGGGGATGAA 60.222 44.000 0.00 0.00 34.33 2.57
107 108 4.287067 GCTTTGTATGGATCTAGGGGATGA 59.713 45.833 0.00 0.00 34.33 2.92
108 109 4.042062 TGCTTTGTATGGATCTAGGGGATG 59.958 45.833 0.00 0.00 34.33 3.51
109 110 4.242811 TGCTTTGTATGGATCTAGGGGAT 58.757 43.478 0.00 0.00 37.37 3.85
110 111 3.664320 TGCTTTGTATGGATCTAGGGGA 58.336 45.455 0.00 0.00 0.00 4.81
111 112 4.330250 CATGCTTTGTATGGATCTAGGGG 58.670 47.826 0.00 0.00 0.00 4.79
112 113 3.755378 GCATGCTTTGTATGGATCTAGGG 59.245 47.826 11.37 0.00 0.00 3.53
113 114 4.392047 TGCATGCTTTGTATGGATCTAGG 58.608 43.478 20.33 0.00 0.00 3.02
114 115 6.261603 TCTTTGCATGCTTTGTATGGATCTAG 59.738 38.462 20.33 0.00 0.00 2.43
115 116 6.121590 TCTTTGCATGCTTTGTATGGATCTA 58.878 36.000 20.33 0.00 0.00 1.98
116 117 4.951715 TCTTTGCATGCTTTGTATGGATCT 59.048 37.500 20.33 0.00 0.00 2.75
117 118 5.252969 TCTTTGCATGCTTTGTATGGATC 57.747 39.130 20.33 0.00 0.00 3.36
118 119 5.664294 TTCTTTGCATGCTTTGTATGGAT 57.336 34.783 20.33 0.00 0.00 3.41
119 120 5.465532 TTTCTTTGCATGCTTTGTATGGA 57.534 34.783 20.33 3.27 0.00 3.41
120 121 5.292589 GGATTTCTTTGCATGCTTTGTATGG 59.707 40.000 20.33 0.94 0.00 2.74
121 122 5.292589 GGGATTTCTTTGCATGCTTTGTATG 59.707 40.000 20.33 2.46 0.00 2.39
122 123 5.188359 AGGGATTTCTTTGCATGCTTTGTAT 59.812 36.000 20.33 5.42 0.00 2.29
123 124 4.527816 AGGGATTTCTTTGCATGCTTTGTA 59.472 37.500 20.33 0.00 0.00 2.41
124 125 3.325716 AGGGATTTCTTTGCATGCTTTGT 59.674 39.130 20.33 0.00 0.00 2.83
125 126 3.934068 AGGGATTTCTTTGCATGCTTTG 58.066 40.909 20.33 8.55 0.00 2.77
126 127 4.380867 CGTAGGGATTTCTTTGCATGCTTT 60.381 41.667 20.33 0.00 0.00 3.51
127 128 3.129287 CGTAGGGATTTCTTTGCATGCTT 59.871 43.478 20.33 0.00 0.00 3.91
128 129 2.684881 CGTAGGGATTTCTTTGCATGCT 59.315 45.455 20.33 0.00 0.00 3.79
129 130 2.423538 ACGTAGGGATTTCTTTGCATGC 59.576 45.455 11.82 11.82 0.00 4.06
130 131 4.876107 AGTACGTAGGGATTTCTTTGCATG 59.124 41.667 0.00 0.00 0.00 4.06
131 132 4.876107 CAGTACGTAGGGATTTCTTTGCAT 59.124 41.667 0.00 0.00 0.00 3.96
132 133 4.250464 CAGTACGTAGGGATTTCTTTGCA 58.750 43.478 0.00 0.00 0.00 4.08
133 134 3.063588 GCAGTACGTAGGGATTTCTTTGC 59.936 47.826 0.00 0.00 0.00 3.68
134 135 3.621715 GGCAGTACGTAGGGATTTCTTTG 59.378 47.826 0.00 0.00 0.00 2.77
135 136 3.370209 GGGCAGTACGTAGGGATTTCTTT 60.370 47.826 0.00 0.00 0.00 2.52
136 137 2.169978 GGGCAGTACGTAGGGATTTCTT 59.830 50.000 0.00 0.00 0.00 2.52
137 138 1.761198 GGGCAGTACGTAGGGATTTCT 59.239 52.381 0.00 0.00 0.00 2.52
138 139 1.761198 AGGGCAGTACGTAGGGATTTC 59.239 52.381 0.00 0.00 0.00 2.17
139 140 1.875488 AGGGCAGTACGTAGGGATTT 58.125 50.000 0.00 0.00 0.00 2.17
140 141 2.697229 GTTAGGGCAGTACGTAGGGATT 59.303 50.000 0.00 0.00 0.00 3.01
141 142 2.091444 AGTTAGGGCAGTACGTAGGGAT 60.091 50.000 0.00 0.00 0.00 3.85
142 143 1.285962 AGTTAGGGCAGTACGTAGGGA 59.714 52.381 0.00 0.00 0.00 4.20
143 144 1.772836 AGTTAGGGCAGTACGTAGGG 58.227 55.000 0.00 0.00 0.00 3.53
144 145 3.549794 ACTAGTTAGGGCAGTACGTAGG 58.450 50.000 0.00 0.00 0.00 3.18
145 146 4.450053 AGACTAGTTAGGGCAGTACGTAG 58.550 47.826 0.00 0.00 0.00 3.51
146 147 4.494091 AGACTAGTTAGGGCAGTACGTA 57.506 45.455 0.00 0.00 0.00 3.57
147 148 3.362870 AGACTAGTTAGGGCAGTACGT 57.637 47.619 0.00 0.00 0.00 3.57
148 149 3.242673 CGAAGACTAGTTAGGGCAGTACG 60.243 52.174 0.00 0.00 0.00 3.67
149 150 3.693578 ACGAAGACTAGTTAGGGCAGTAC 59.306 47.826 0.00 0.00 0.00 2.73
150 151 3.944015 GACGAAGACTAGTTAGGGCAGTA 59.056 47.826 0.00 0.00 0.00 2.74
151 152 2.754002 GACGAAGACTAGTTAGGGCAGT 59.246 50.000 0.00 0.00 0.00 4.40
152 153 2.223294 CGACGAAGACTAGTTAGGGCAG 60.223 54.545 0.00 0.00 0.00 4.85
153 154 1.741706 CGACGAAGACTAGTTAGGGCA 59.258 52.381 0.00 0.00 0.00 5.36
154 155 1.742268 ACGACGAAGACTAGTTAGGGC 59.258 52.381 0.00 0.00 0.00 5.19
155 156 2.030213 CGACGACGAAGACTAGTTAGGG 59.970 54.545 0.00 0.00 42.66 3.53
156 157 2.030213 CCGACGACGAAGACTAGTTAGG 59.970 54.545 9.28 0.00 42.66 2.69
157 158 2.926200 TCCGACGACGAAGACTAGTTAG 59.074 50.000 9.28 0.00 42.66 2.34
158 159 2.926200 CTCCGACGACGAAGACTAGTTA 59.074 50.000 9.28 0.00 42.66 2.24
159 160 1.731160 CTCCGACGACGAAGACTAGTT 59.269 52.381 9.28 0.00 42.66 2.24
160 161 1.067283 TCTCCGACGACGAAGACTAGT 60.067 52.381 9.28 0.00 42.66 2.57
161 162 1.638133 TCTCCGACGACGAAGACTAG 58.362 55.000 9.28 0.00 42.66 2.57
162 163 1.931841 CATCTCCGACGACGAAGACTA 59.068 52.381 9.28 0.00 35.46 2.59
163 164 0.727970 CATCTCCGACGACGAAGACT 59.272 55.000 9.28 0.00 35.46 3.24
164 165 0.862283 GCATCTCCGACGACGAAGAC 60.862 60.000 9.28 0.00 35.46 3.01
165 166 1.428219 GCATCTCCGACGACGAAGA 59.572 57.895 9.28 3.16 37.29 2.87
166 167 1.586564 GGCATCTCCGACGACGAAG 60.587 63.158 9.28 0.00 42.66 3.79
167 168 2.488355 GGCATCTCCGACGACGAA 59.512 61.111 9.28 0.00 42.66 3.85
168 169 3.515286 GGGCATCTCCGACGACGA 61.515 66.667 9.28 0.00 42.66 4.20
169 170 3.822192 TGGGCATCTCCGACGACG 61.822 66.667 0.00 0.00 39.43 5.12
170 171 2.202756 GTGGGCATCTCCGACGAC 60.203 66.667 0.00 0.00 33.82 4.34
171 172 2.279810 TTGTGGGCATCTCCGACGA 61.280 57.895 0.00 0.00 45.46 4.20
172 173 2.100631 GTTGTGGGCATCTCCGACG 61.101 63.158 0.00 0.00 45.46 5.12
173 174 2.100631 CGTTGTGGGCATCTCCGAC 61.101 63.158 0.00 0.00 43.13 4.79
174 175 2.264480 CGTTGTGGGCATCTCCGA 59.736 61.111 0.00 0.00 34.94 4.55
175 176 2.100631 GTCGTTGTGGGCATCTCCG 61.101 63.158 0.00 0.00 34.94 4.63
176 177 2.100631 CGTCGTTGTGGGCATCTCC 61.101 63.158 0.00 0.00 0.00 3.71
177 178 2.100631 CCGTCGTTGTGGGCATCTC 61.101 63.158 0.00 0.00 0.00 2.75
178 179 2.047274 CCGTCGTTGTGGGCATCT 60.047 61.111 0.00 0.00 0.00 2.90
179 180 2.358247 ACCGTCGTTGTGGGCATC 60.358 61.111 0.00 0.00 0.00 3.91
180 181 2.668212 CACCGTCGTTGTGGGCAT 60.668 61.111 0.00 0.00 0.00 4.40
183 184 3.345808 CAGCACCGTCGTTGTGGG 61.346 66.667 4.20 0.00 34.27 4.61
184 185 3.345808 CCAGCACCGTCGTTGTGG 61.346 66.667 4.20 1.49 34.27 4.17
185 186 3.345808 CCCAGCACCGTCGTTGTG 61.346 66.667 0.00 0.00 36.79 3.33
207 208 3.775654 CTCCTCACCCGTCCAGCC 61.776 72.222 0.00 0.00 0.00 4.85
208 209 3.775654 CCTCCTCACCCGTCCAGC 61.776 72.222 0.00 0.00 0.00 4.85
209 210 2.037367 TCCTCCTCACCCGTCCAG 59.963 66.667 0.00 0.00 0.00 3.86
210 211 2.037367 CTCCTCCTCACCCGTCCA 59.963 66.667 0.00 0.00 0.00 4.02
211 212 2.760385 CCTCCTCCTCACCCGTCC 60.760 72.222 0.00 0.00 0.00 4.79
212 213 2.760385 CCCTCCTCCTCACCCGTC 60.760 72.222 0.00 0.00 0.00 4.79
214 215 4.787280 AGCCCTCCTCCTCACCCG 62.787 72.222 0.00 0.00 0.00 5.28
215 216 2.766229 GAGCCCTCCTCCTCACCC 60.766 72.222 0.00 0.00 34.35 4.61
224 225 3.934962 GATGAGCCGGAGCCCTCC 61.935 72.222 5.05 4.19 46.18 4.30
225 226 3.934962 GGATGAGCCGGAGCCCTC 61.935 72.222 5.05 2.01 41.25 4.30
226 227 4.488911 AGGATGAGCCGGAGCCCT 62.489 66.667 5.05 0.00 43.43 5.19
227 228 3.934962 GAGGATGAGCCGGAGCCC 61.935 72.222 5.05 0.00 43.43 5.19
228 229 3.934962 GGAGGATGAGCCGGAGCC 61.935 72.222 5.05 0.00 43.43 4.70
229 230 2.841988 AGGAGGATGAGCCGGAGC 60.842 66.667 5.05 0.00 43.43 4.70
230 231 2.560119 CGAGGAGGATGAGCCGGAG 61.560 68.421 5.05 0.00 43.43 4.63
231 232 2.519541 CGAGGAGGATGAGCCGGA 60.520 66.667 5.05 0.00 43.43 5.14
232 233 2.835431 ACGAGGAGGATGAGCCGG 60.835 66.667 0.00 0.00 43.43 6.13
233 234 2.415010 CACGAGGAGGATGAGCCG 59.585 66.667 0.00 0.00 43.43 5.52
234 235 2.107953 GCACGAGGAGGATGAGCC 59.892 66.667 0.00 0.00 0.00 4.70
235 236 1.067250 GAGCACGAGGAGGATGAGC 59.933 63.158 0.00 0.00 0.00 4.26
236 237 1.098129 TCGAGCACGAGGAGGATGAG 61.098 60.000 0.88 0.00 43.81 2.90
237 238 1.077716 TCGAGCACGAGGAGGATGA 60.078 57.895 0.88 0.00 43.81 2.92
238 239 3.514417 TCGAGCACGAGGAGGATG 58.486 61.111 0.88 0.00 43.81 3.51
246 247 1.037579 ATGGATGAGGTCGAGCACGA 61.038 55.000 18.15 0.88 46.56 4.35
247 248 0.873312 CATGGATGAGGTCGAGCACG 60.873 60.000 18.15 0.00 41.26 5.34
248 249 0.176680 ACATGGATGAGGTCGAGCAC 59.823 55.000 18.15 11.53 0.00 4.40
249 250 1.683385 CTACATGGATGAGGTCGAGCA 59.317 52.381 18.15 0.79 0.00 4.26
250 251 1.000283 CCTACATGGATGAGGTCGAGC 60.000 57.143 6.48 6.48 38.35 5.03
251 252 1.000283 GCCTACATGGATGAGGTCGAG 60.000 57.143 0.00 0.00 38.35 4.04
252 253 1.040646 GCCTACATGGATGAGGTCGA 58.959 55.000 0.00 0.00 38.35 4.20
253 254 0.319040 CGCCTACATGGATGAGGTCG 60.319 60.000 0.00 3.26 38.35 4.79
254 255 1.000283 CTCGCCTACATGGATGAGGTC 60.000 57.143 0.00 0.00 36.68 3.85
255 256 1.043816 CTCGCCTACATGGATGAGGT 58.956 55.000 0.00 0.00 36.68 3.85
256 257 0.320247 GCTCGCCTACATGGATGAGG 60.320 60.000 0.00 0.00 39.08 3.86
257 258 0.390492 TGCTCGCCTACATGGATGAG 59.610 55.000 0.00 0.00 40.59 2.90
258 259 1.001293 GATGCTCGCCTACATGGATGA 59.999 52.381 0.00 0.00 38.35 2.92
259 260 1.001746 AGATGCTCGCCTACATGGATG 59.998 52.381 0.00 0.00 38.35 3.51
260 261 1.346062 AGATGCTCGCCTACATGGAT 58.654 50.000 0.00 0.00 38.35 3.41
261 262 1.069204 GAAGATGCTCGCCTACATGGA 59.931 52.381 0.00 0.00 38.35 3.41
262 263 1.506493 GAAGATGCTCGCCTACATGG 58.494 55.000 0.00 0.00 39.35 3.66
263 264 1.135046 CGAAGATGCTCGCCTACATG 58.865 55.000 0.00 0.00 31.04 3.21
264 265 0.747255 ACGAAGATGCTCGCCTACAT 59.253 50.000 0.00 0.00 42.69 2.29
265 266 0.100682 GACGAAGATGCTCGCCTACA 59.899 55.000 0.00 0.00 42.69 2.74
266 267 0.382515 AGACGAAGATGCTCGCCTAC 59.617 55.000 0.00 0.00 42.69 3.18
267 268 0.663688 GAGACGAAGATGCTCGCCTA 59.336 55.000 0.00 0.00 42.69 3.93
268 269 1.435515 GAGACGAAGATGCTCGCCT 59.564 57.895 0.00 0.00 42.69 5.52
269 270 1.590259 GGAGACGAAGATGCTCGCC 60.590 63.158 0.00 0.00 42.69 5.54
270 271 0.593773 GAGGAGACGAAGATGCTCGC 60.594 60.000 0.00 0.00 42.69 5.03
271 272 0.030101 GGAGGAGACGAAGATGCTCG 59.970 60.000 0.00 0.00 44.50 5.03
272 273 0.030101 CGGAGGAGACGAAGATGCTC 59.970 60.000 0.00 0.00 35.43 4.26
273 274 2.010582 GCGGAGGAGACGAAGATGCT 62.011 60.000 0.00 0.00 0.00 3.79
274 275 1.590259 GCGGAGGAGACGAAGATGC 60.590 63.158 0.00 0.00 0.00 3.91
275 276 1.298713 CGCGGAGGAGACGAAGATG 60.299 63.158 0.00 0.00 0.00 2.90
276 277 2.482333 CCGCGGAGGAGACGAAGAT 61.482 63.158 24.07 0.00 45.00 2.40
277 278 3.132139 CCGCGGAGGAGACGAAGA 61.132 66.667 24.07 0.00 45.00 2.87
278 279 4.856607 GCCGCGGAGGAGACGAAG 62.857 72.222 33.48 0.00 45.00 3.79
299 300 2.108566 CAGGAGATGGAGGCGCAG 59.891 66.667 10.83 0.00 0.00 5.18
300 301 4.166888 GCAGGAGATGGAGGCGCA 62.167 66.667 10.83 0.00 0.00 6.09
301 302 4.925861 GGCAGGAGATGGAGGCGC 62.926 72.222 0.00 0.00 0.00 6.53
302 303 4.598894 CGGCAGGAGATGGAGGCG 62.599 72.222 0.00 0.00 43.34 5.52
303 304 4.247380 CCGGCAGGAGATGGAGGC 62.247 72.222 0.00 0.00 41.02 4.70
304 305 4.247380 GCCGGCAGGAGATGGAGG 62.247 72.222 24.80 0.00 41.02 4.30
305 306 4.598894 CGCCGGCAGGAGATGGAG 62.599 72.222 28.98 0.98 39.96 3.86
319 320 4.719369 AGGCAAGACGTCGTCGCC 62.719 66.667 27.25 27.25 43.31 5.54
320 321 3.173240 GAGGCAAGACGTCGTCGC 61.173 66.667 19.11 16.64 41.18 5.19
321 322 2.504244 GGAGGCAAGACGTCGTCG 60.504 66.667 19.11 7.75 37.67 5.12
322 323 2.504244 CGGAGGCAAGACGTCGTC 60.504 66.667 17.70 17.70 33.84 4.20
323 324 4.719369 GCGGAGGCAAGACGTCGT 62.719 66.667 10.46 3.44 39.62 4.34
345 346 3.959991 GACTGCCTTGCCCGGAGTC 62.960 68.421 0.73 1.47 0.00 3.36
346 347 4.021925 GACTGCCTTGCCCGGAGT 62.022 66.667 0.73 0.00 0.00 3.85
349 350 3.976701 AATCGACTGCCTTGCCCGG 62.977 63.158 0.00 0.00 0.00 5.73
350 351 0.742990 TAAATCGACTGCCTTGCCCG 60.743 55.000 0.00 0.00 0.00 6.13
351 352 1.459450 TTAAATCGACTGCCTTGCCC 58.541 50.000 0.00 0.00 0.00 5.36
352 353 3.782889 ATTTAAATCGACTGCCTTGCC 57.217 42.857 0.00 0.00 0.00 4.52
353 354 4.282873 GCTATTTAAATCGACTGCCTTGC 58.717 43.478 3.39 0.00 0.00 4.01
354 355 4.552767 CGGCTATTTAAATCGACTGCCTTG 60.553 45.833 3.39 0.00 37.22 3.61
355 356 3.560068 CGGCTATTTAAATCGACTGCCTT 59.440 43.478 3.39 0.00 37.22 4.35
356 357 3.131396 CGGCTATTTAAATCGACTGCCT 58.869 45.455 3.39 0.00 37.22 4.75
357 358 2.223377 CCGGCTATTTAAATCGACTGCC 59.777 50.000 3.39 10.51 36.14 4.85
358 359 2.223377 CCCGGCTATTTAAATCGACTGC 59.777 50.000 3.39 3.26 0.00 4.40
359 360 2.223377 GCCCGGCTATTTAAATCGACTG 59.777 50.000 3.39 0.00 0.00 3.51
360 361 2.158871 TGCCCGGCTATTTAAATCGACT 60.159 45.455 11.61 0.00 0.00 4.18
361 362 2.215196 TGCCCGGCTATTTAAATCGAC 58.785 47.619 11.61 0.00 0.00 4.20
362 363 2.623878 TGCCCGGCTATTTAAATCGA 57.376 45.000 11.61 0.00 0.00 3.59
363 364 2.031157 CCTTGCCCGGCTATTTAAATCG 60.031 50.000 11.61 2.45 0.00 3.34
364 365 2.288213 GCCTTGCCCGGCTATTTAAATC 60.288 50.000 11.61 0.00 46.63 2.17
365 366 1.686587 GCCTTGCCCGGCTATTTAAAT 59.313 47.619 11.61 5.89 46.63 1.40
366 367 1.107945 GCCTTGCCCGGCTATTTAAA 58.892 50.000 11.61 0.00 46.63 1.52
367 368 2.801859 GCCTTGCCCGGCTATTTAA 58.198 52.632 11.61 0.00 46.63 1.52
368 369 4.571243 GCCTTGCCCGGCTATTTA 57.429 55.556 11.61 0.00 46.63 1.40
396 397 4.790962 ATGGTGCAGCTCTGGCGG 62.791 66.667 18.08 0.00 44.37 6.13
397 398 3.506096 CATGGTGCAGCTCTGGCG 61.506 66.667 18.08 0.00 44.37 5.69
398 399 3.823330 GCATGGTGCAGCTCTGGC 61.823 66.667 18.08 11.17 44.26 4.85
399 400 3.506096 CGCATGGTGCAGCTCTGG 61.506 66.667 18.08 4.99 45.36 3.86
400 401 3.506096 CCGCATGGTGCAGCTCTG 61.506 66.667 18.08 14.97 45.36 3.35
424 425 3.507009 GTCTCCTCCGTCGGACCG 61.507 72.222 10.71 7.84 0.00 4.79
425 426 3.507009 CGTCTCCTCCGTCGGACC 61.507 72.222 10.71 0.00 0.00 4.46
426 427 2.435586 TCGTCTCCTCCGTCGGAC 60.436 66.667 10.71 0.00 0.00 4.79
427 428 2.125229 CTCGTCTCCTCCGTCGGA 60.125 66.667 14.54 14.54 0.00 4.55
428 429 1.584380 AAACTCGTCTCCTCCGTCGG 61.584 60.000 4.39 4.39 0.00 4.79
429 430 0.240411 AAAACTCGTCTCCTCCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
430 431 1.669211 CCAAAACTCGTCTCCTCCGTC 60.669 57.143 0.00 0.00 0.00 4.79
431 432 0.317479 CCAAAACTCGTCTCCTCCGT 59.683 55.000 0.00 0.00 0.00 4.69
432 433 0.601558 TCCAAAACTCGTCTCCTCCG 59.398 55.000 0.00 0.00 0.00 4.63
433 434 1.337917 GGTCCAAAACTCGTCTCCTCC 60.338 57.143 0.00 0.00 0.00 4.30
434 435 1.669211 CGGTCCAAAACTCGTCTCCTC 60.669 57.143 0.00 0.00 0.00 3.71
435 436 0.317479 CGGTCCAAAACTCGTCTCCT 59.683 55.000 0.00 0.00 0.00 3.69
436 437 1.289800 GCGGTCCAAAACTCGTCTCC 61.290 60.000 0.00 0.00 0.00 3.71
437 438 1.289800 GGCGGTCCAAAACTCGTCTC 61.290 60.000 0.00 0.00 0.00 3.36
438 439 1.301479 GGCGGTCCAAAACTCGTCT 60.301 57.895 0.00 0.00 0.00 4.18
439 440 2.664436 CGGCGGTCCAAAACTCGTC 61.664 63.158 0.00 0.00 0.00 4.20
440 441 2.663852 CGGCGGTCCAAAACTCGT 60.664 61.111 0.00 0.00 0.00 4.18
441 442 3.419759 CCGGCGGTCCAAAACTCG 61.420 66.667 19.97 0.00 0.00 4.18
442 443 3.053896 CCCGGCGGTCCAAAACTC 61.054 66.667 26.32 0.00 0.00 3.01
443 444 2.914756 AAACCCGGCGGTCCAAAACT 62.915 55.000 26.32 0.00 43.71 2.66
444 445 2.491897 AAACCCGGCGGTCCAAAAC 61.492 57.895 26.32 0.00 43.71 2.43
445 446 2.123812 AAACCCGGCGGTCCAAAA 60.124 55.556 26.32 0.00 43.71 2.44
446 447 2.907917 CAAACCCGGCGGTCCAAA 60.908 61.111 26.32 0.00 43.71 3.28
447 448 3.835790 CTCAAACCCGGCGGTCCAA 62.836 63.158 26.32 5.13 43.71 3.53
448 449 4.323477 CTCAAACCCGGCGGTCCA 62.323 66.667 26.32 2.55 43.71 4.02
455 456 2.137425 GAAAACGCCCTCAAACCCGG 62.137 60.000 0.00 0.00 0.00 5.73
456 457 1.284715 GAAAACGCCCTCAAACCCG 59.715 57.895 0.00 0.00 0.00 5.28
457 458 1.167781 TCGAAAACGCCCTCAAACCC 61.168 55.000 0.00 0.00 0.00 4.11
458 459 0.040692 GTCGAAAACGCCCTCAAACC 60.041 55.000 0.00 0.00 0.00 3.27
459 460 0.942252 AGTCGAAAACGCCCTCAAAC 59.058 50.000 0.00 0.00 0.00 2.93
460 461 0.941542 CAGTCGAAAACGCCCTCAAA 59.058 50.000 0.00 0.00 0.00 2.69
461 462 0.882927 CCAGTCGAAAACGCCCTCAA 60.883 55.000 0.00 0.00 0.00 3.02
462 463 1.301401 CCAGTCGAAAACGCCCTCA 60.301 57.895 0.00 0.00 0.00 3.86
463 464 2.033194 CCCAGTCGAAAACGCCCTC 61.033 63.158 0.00 0.00 0.00 4.30
464 465 2.032071 CCCAGTCGAAAACGCCCT 59.968 61.111 0.00 0.00 0.00 5.19
465 466 2.031465 TCCCAGTCGAAAACGCCC 59.969 61.111 0.00 0.00 0.00 6.13
466 467 2.322830 GGTCCCAGTCGAAAACGCC 61.323 63.158 0.00 0.00 0.00 5.68
467 468 2.322830 GGGTCCCAGTCGAAAACGC 61.323 63.158 1.78 0.00 0.00 4.84
468 469 1.670083 GGGGTCCCAGTCGAAAACG 60.670 63.158 10.98 0.00 35.81 3.60
469 470 0.109913 AAGGGGTCCCAGTCGAAAAC 59.890 55.000 10.98 0.00 38.92 2.43
470 471 0.399075 GAAGGGGTCCCAGTCGAAAA 59.601 55.000 10.98 0.00 38.92 2.29
471 472 1.823169 CGAAGGGGTCCCAGTCGAAA 61.823 60.000 22.18 0.00 43.82 3.46
472 473 2.280552 CGAAGGGGTCCCAGTCGAA 61.281 63.158 22.18 0.00 43.82 3.71
473 474 2.678934 CGAAGGGGTCCCAGTCGA 60.679 66.667 22.18 0.00 43.82 4.20
474 475 4.452733 GCGAAGGGGTCCCAGTCG 62.453 72.222 22.29 22.29 43.89 4.18
475 476 4.097361 GGCGAAGGGGTCCCAGTC 62.097 72.222 10.98 5.08 38.92 3.51
476 477 4.974438 TGGCGAAGGGGTCCCAGT 62.974 66.667 10.98 0.00 38.92 4.00
477 478 4.101448 CTGGCGAAGGGGTCCCAG 62.101 72.222 10.98 0.00 37.95 4.45
478 479 4.974438 ACTGGCGAAGGGGTCCCA 62.974 66.667 10.98 0.00 38.92 4.37
479 480 4.097361 GACTGGCGAAGGGGTCCC 62.097 72.222 0.00 0.00 0.00 4.46
480 481 3.003763 AGACTGGCGAAGGGGTCC 61.004 66.667 0.00 0.00 0.00 4.46
481 482 2.266055 CAGACTGGCGAAGGGGTC 59.734 66.667 0.00 0.00 0.00 4.46
482 483 2.203788 TCAGACTGGCGAAGGGGT 60.204 61.111 1.81 0.00 0.00 4.95
483 484 2.266055 GTCAGACTGGCGAAGGGG 59.734 66.667 1.81 0.00 0.00 4.79
491 492 2.126307 CTCGCCACGTCAGACTGG 60.126 66.667 12.42 12.42 0.00 4.00
492 493 2.807045 GCTCGCCACGTCAGACTG 60.807 66.667 0.00 0.00 0.00 3.51
493 494 4.406173 CGCTCGCCACGTCAGACT 62.406 66.667 0.00 0.00 0.00 3.24
494 495 4.702081 ACGCTCGCCACGTCAGAC 62.702 66.667 0.00 0.00 40.28 3.51
495 496 4.700365 CACGCTCGCCACGTCAGA 62.700 66.667 0.00 0.00 42.96 3.27
515 516 3.542676 TAGGTATGTGGGCGCCCG 61.543 66.667 39.00 0.00 39.42 6.13
516 517 2.110420 GTAGGTATGTGGGCGCCC 59.890 66.667 39.40 39.40 0.00 6.13
517 518 2.110420 GGTAGGTATGTGGGCGCC 59.890 66.667 21.18 21.18 0.00 6.53
518 519 2.110420 GGGTAGGTATGTGGGCGC 59.890 66.667 0.00 0.00 0.00 6.53
519 520 1.415672 ATGGGGTAGGTATGTGGGCG 61.416 60.000 0.00 0.00 0.00 6.13
520 521 1.737199 TATGGGGTAGGTATGTGGGC 58.263 55.000 0.00 0.00 0.00 5.36
521 522 4.508405 CCAAATATGGGGTAGGTATGTGGG 60.508 50.000 0.00 0.00 43.51 4.61
522 523 4.662278 CCAAATATGGGGTAGGTATGTGG 58.338 47.826 0.00 0.00 43.51 4.17
536 537 3.698040 GCCTCATATCCAGCCCAAATATG 59.302 47.826 0.00 0.00 35.58 1.78
537 538 3.623203 CGCCTCATATCCAGCCCAAATAT 60.623 47.826 0.00 0.00 0.00 1.28
538 539 2.290260 CGCCTCATATCCAGCCCAAATA 60.290 50.000 0.00 0.00 0.00 1.40
539 540 1.546323 CGCCTCATATCCAGCCCAAAT 60.546 52.381 0.00 0.00 0.00 2.32
540 541 0.179020 CGCCTCATATCCAGCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
541 542 1.344953 ACGCCTCATATCCAGCCCAA 61.345 55.000 0.00 0.00 0.00 4.12
542 543 1.766059 ACGCCTCATATCCAGCCCA 60.766 57.895 0.00 0.00 0.00 5.36
543 544 1.302033 CACGCCTCATATCCAGCCC 60.302 63.158 0.00 0.00 0.00 5.19
544 545 1.963338 GCACGCCTCATATCCAGCC 60.963 63.158 0.00 0.00 0.00 4.85
545 546 1.963338 GGCACGCCTCATATCCAGC 60.963 63.158 0.00 0.00 0.00 4.85
546 547 0.602106 CTGGCACGCCTCATATCCAG 60.602 60.000 9.92 0.00 35.68 3.86
547 548 1.337384 ACTGGCACGCCTCATATCCA 61.337 55.000 9.92 0.00 36.94 3.41
548 549 0.601311 GACTGGCACGCCTCATATCC 60.601 60.000 9.92 0.00 36.94 2.59
549 550 0.104855 TGACTGGCACGCCTCATATC 59.895 55.000 9.92 0.77 36.94 1.63
550 551 0.541392 TTGACTGGCACGCCTCATAT 59.459 50.000 9.92 0.00 36.94 1.78
551 552 0.391130 GTTGACTGGCACGCCTCATA 60.391 55.000 9.92 0.00 36.94 2.15
552 553 1.672356 GTTGACTGGCACGCCTCAT 60.672 57.895 9.92 0.00 36.94 2.90
553 554 2.280797 GTTGACTGGCACGCCTCA 60.281 61.111 9.92 2.64 36.94 3.86
554 555 3.050275 GGTTGACTGGCACGCCTC 61.050 66.667 9.92 0.00 36.94 4.70
555 556 4.643387 GGGTTGACTGGCACGCCT 62.643 66.667 9.92 0.00 36.94 5.52
558 559 4.308458 TCCGGGTTGACTGGCACG 62.308 66.667 0.00 0.00 45.92 5.34
559 560 2.668550 GTCCGGGTTGACTGGCAC 60.669 66.667 0.00 0.00 45.92 5.01
560 561 4.308458 CGTCCGGGTTGACTGGCA 62.308 66.667 0.00 0.00 45.92 4.92
561 562 3.819877 AACGTCCGGGTTGACTGGC 62.820 63.158 0.00 0.00 45.92 4.85
563 564 0.531090 TCAAACGTCCGGGTTGACTG 60.531 55.000 0.00 0.00 32.97 3.51
564 565 0.249741 CTCAAACGTCCGGGTTGACT 60.250 55.000 0.00 0.00 32.97 3.41
565 566 1.226030 CCTCAAACGTCCGGGTTGAC 61.226 60.000 0.00 0.00 0.00 3.18
566 567 1.070105 CCTCAAACGTCCGGGTTGA 59.930 57.895 0.00 6.13 0.00 3.18
567 568 1.964373 CCCTCAAACGTCCGGGTTG 60.964 63.158 0.00 1.48 31.89 3.77
568 569 2.428622 CCCTCAAACGTCCGGGTT 59.571 61.111 0.00 0.00 31.89 4.11
569 570 4.324991 GCCCTCAAACGTCCGGGT 62.325 66.667 0.00 0.00 38.97 5.28
572 573 4.675029 ACGGCCCTCAAACGTCCG 62.675 66.667 7.93 7.93 45.04 4.79
573 574 1.895231 AAACGGCCCTCAAACGTCC 60.895 57.895 0.00 0.00 40.31 4.79
574 575 1.161563 TCAAACGGCCCTCAAACGTC 61.162 55.000 0.00 0.00 40.31 4.34
575 576 1.153127 TCAAACGGCCCTCAAACGT 60.153 52.632 0.00 0.00 43.43 3.99
576 577 1.574428 CTCAAACGGCCCTCAAACG 59.426 57.895 0.00 0.00 0.00 3.60
577 578 1.956802 CCTCAAACGGCCCTCAAAC 59.043 57.895 0.00 0.00 0.00 2.93
578 579 1.901464 GCCTCAAACGGCCCTCAAA 60.901 57.895 0.00 0.00 44.41 2.69
579 580 2.282180 GCCTCAAACGGCCCTCAA 60.282 61.111 0.00 0.00 44.41 3.02
586 587 3.110178 GACGGACGCCTCAAACGG 61.110 66.667 0.00 0.00 34.00 4.44
587 588 2.049433 AGACGGACGCCTCAAACG 60.049 61.111 0.00 0.00 0.00 3.60
588 589 2.027625 CCAGACGGACGCCTCAAAC 61.028 63.158 0.00 0.00 0.00 2.93
589 590 2.342279 CCAGACGGACGCCTCAAA 59.658 61.111 0.00 0.00 0.00 2.69
590 591 3.691342 CCCAGACGGACGCCTCAA 61.691 66.667 0.00 0.00 0.00 3.02
591 592 4.988716 ACCCAGACGGACGCCTCA 62.989 66.667 0.00 0.00 34.64 3.86
592 593 1.880819 TTAACCCAGACGGACGCCTC 61.881 60.000 0.00 0.00 34.64 4.70
593 594 1.474332 TTTAACCCAGACGGACGCCT 61.474 55.000 0.00 0.00 34.64 5.52
594 595 0.603439 TTTTAACCCAGACGGACGCC 60.603 55.000 0.00 0.00 34.64 5.68
595 596 1.228533 TTTTTAACCCAGACGGACGC 58.771 50.000 0.00 0.00 34.64 5.19
612 613 2.616842 GTCACTGACCGGTCACATTTTT 59.383 45.455 33.23 10.37 35.46 1.94
613 614 2.218603 GTCACTGACCGGTCACATTTT 58.781 47.619 33.23 12.15 35.46 1.82
614 615 1.542547 GGTCACTGACCGGTCACATTT 60.543 52.381 33.23 14.69 43.14 2.32
615 616 0.034896 GGTCACTGACCGGTCACATT 59.965 55.000 33.23 17.26 43.14 2.71
616 617 1.671742 GGTCACTGACCGGTCACAT 59.328 57.895 33.23 21.02 43.14 3.21
617 618 3.134879 GGTCACTGACCGGTCACA 58.865 61.111 33.23 16.93 43.14 3.58
642 643 1.302033 GTCTCATATGCCCAGGCGG 60.302 63.158 3.83 0.00 45.51 6.13
643 644 1.665916 CGTCTCATATGCCCAGGCG 60.666 63.158 3.83 2.95 45.51 5.52
644 645 1.302033 CCGTCTCATATGCCCAGGC 60.302 63.158 0.38 0.38 42.35 4.85
645 646 1.372683 CCCGTCTCATATGCCCAGG 59.627 63.158 0.00 0.00 0.00 4.45
646 647 0.469917 AACCCGTCTCATATGCCCAG 59.530 55.000 0.00 0.00 0.00 4.45
647 648 0.916086 AAACCCGTCTCATATGCCCA 59.084 50.000 0.00 0.00 0.00 5.36
648 649 2.922740 TAAACCCGTCTCATATGCCC 57.077 50.000 0.00 0.00 0.00 5.36
649 650 3.139077 CCTTAAACCCGTCTCATATGCC 58.861 50.000 0.00 0.00 0.00 4.40
650 651 2.548480 GCCTTAAACCCGTCTCATATGC 59.452 50.000 0.00 0.00 0.00 3.14
651 652 2.800544 CGCCTTAAACCCGTCTCATATG 59.199 50.000 0.00 0.00 0.00 1.78
652 653 2.433239 ACGCCTTAAACCCGTCTCATAT 59.567 45.455 0.00 0.00 0.00 1.78
653 654 1.826720 ACGCCTTAAACCCGTCTCATA 59.173 47.619 0.00 0.00 0.00 2.15
654 655 0.611714 ACGCCTTAAACCCGTCTCAT 59.388 50.000 0.00 0.00 0.00 2.90
655 656 0.037975 GACGCCTTAAACCCGTCTCA 60.038 55.000 12.32 0.00 45.56 3.27
656 657 2.746997 GACGCCTTAAACCCGTCTC 58.253 57.895 12.32 0.00 45.56 3.36
659 660 2.047939 CGGACGCCTTAAACCCGT 60.048 61.111 0.00 0.00 37.99 5.28
660 661 2.816520 CCGGACGCCTTAAACCCG 60.817 66.667 0.00 0.00 39.85 5.28
661 662 3.129502 GCCGGACGCCTTAAACCC 61.130 66.667 5.05 0.00 0.00 4.11
662 663 2.046604 AGCCGGACGCCTTAAACC 60.047 61.111 5.05 0.00 38.78 3.27
663 664 0.390209 TACAGCCGGACGCCTTAAAC 60.390 55.000 5.05 0.00 38.78 2.01
664 665 0.108520 CTACAGCCGGACGCCTTAAA 60.109 55.000 5.05 0.00 38.78 1.52
665 666 0.966875 TCTACAGCCGGACGCCTTAA 60.967 55.000 5.05 0.00 38.78 1.85
666 667 0.754217 ATCTACAGCCGGACGCCTTA 60.754 55.000 5.05 0.00 38.78 2.69
667 668 2.058595 ATCTACAGCCGGACGCCTT 61.059 57.895 5.05 0.00 38.78 4.35
668 669 2.442272 ATCTACAGCCGGACGCCT 60.442 61.111 5.05 0.00 38.78 5.52
669 670 2.279517 CATCTACAGCCGGACGCC 60.280 66.667 5.05 0.00 38.78 5.68
670 671 1.146358 GAACATCTACAGCCGGACGC 61.146 60.000 5.05 0.00 37.98 5.19
671 672 0.456221 AGAACATCTACAGCCGGACG 59.544 55.000 5.05 0.00 0.00 4.79
672 673 2.541556 GAAGAACATCTACAGCCGGAC 58.458 52.381 5.05 0.00 0.00 4.79
673 674 1.480954 GGAAGAACATCTACAGCCGGA 59.519 52.381 5.05 0.00 0.00 5.14
674 675 1.482593 AGGAAGAACATCTACAGCCGG 59.517 52.381 0.00 0.00 0.00 6.13
675 676 2.969628 AGGAAGAACATCTACAGCCG 57.030 50.000 0.00 0.00 0.00 5.52
676 677 8.910351 ATTTATTAGGAAGAACATCTACAGCC 57.090 34.615 0.00 0.00 0.00 4.85
684 685 9.853177 CCAGTAGGAATTTATTAGGAAGAACAT 57.147 33.333 0.00 0.00 36.89 2.71
685 686 9.053472 TCCAGTAGGAATTTATTAGGAAGAACA 57.947 33.333 0.00 0.00 42.23 3.18
686 687 9.549078 CTCCAGTAGGAATTTATTAGGAAGAAC 57.451 37.037 0.00 0.00 45.19 3.01
687 688 8.211629 GCTCCAGTAGGAATTTATTAGGAAGAA 58.788 37.037 0.00 0.00 45.19 2.52
688 689 7.347222 TGCTCCAGTAGGAATTTATTAGGAAGA 59.653 37.037 0.00 0.00 45.19 2.87
689 690 7.509546 TGCTCCAGTAGGAATTTATTAGGAAG 58.490 38.462 0.00 0.00 45.19 3.46
690 691 7.446106 TGCTCCAGTAGGAATTTATTAGGAA 57.554 36.000 0.00 0.00 45.19 3.36
691 692 7.525526 CGATGCTCCAGTAGGAATTTATTAGGA 60.526 40.741 0.00 0.00 45.19 2.94
692 693 6.591834 CGATGCTCCAGTAGGAATTTATTAGG 59.408 42.308 0.00 0.00 45.19 2.69
693 694 7.155328 ACGATGCTCCAGTAGGAATTTATTAG 58.845 38.462 0.00 0.00 45.19 1.73
694 695 7.062749 ACGATGCTCCAGTAGGAATTTATTA 57.937 36.000 0.00 0.00 45.19 0.98
695 696 5.930135 ACGATGCTCCAGTAGGAATTTATT 58.070 37.500 0.00 0.00 45.19 1.40
696 697 5.552870 ACGATGCTCCAGTAGGAATTTAT 57.447 39.130 0.00 0.00 45.19 1.40
715 716 5.237561 TGAAATCATGAAACGAAGGAAACGA 59.762 36.000 0.00 0.00 34.70 3.85
783 784 3.423645 GCGACAAGAAGATTTGTTCCTCG 60.424 47.826 0.00 0.00 41.15 4.63
905 911 0.878416 CGGATTGGCGAAGTTCCAAA 59.122 50.000 0.50 0.00 45.63 3.28
912 918 2.399611 GCGTTCGGATTGGCGAAG 59.600 61.111 0.00 0.00 0.00 3.79
929 941 2.107141 GGATCTGAACCGAGGCCG 59.893 66.667 0.00 0.00 0.00 6.13
936 948 4.242336 AGGAAAATGGAGGATCTGAACC 57.758 45.455 0.00 0.00 33.73 3.62
942 954 2.158813 TGCGGTAGGAAAATGGAGGATC 60.159 50.000 0.00 0.00 0.00 3.36
955 967 1.823899 GGGCTTTGGATGCGGTAGG 60.824 63.158 0.00 0.00 0.00 3.18
996 1008 3.117171 GTGTCGCTGCTGCTCTGG 61.117 66.667 14.03 0.00 36.97 3.86
998 1010 4.731612 CGGTGTCGCTGCTGCTCT 62.732 66.667 14.03 0.00 36.97 4.09
1321 1339 1.729149 GCATTTTCAGTTTCTCCGCCG 60.729 52.381 0.00 0.00 0.00 6.46
1417 1438 1.736586 GATGTCGATCCGGAGCTGT 59.263 57.895 19.08 0.00 0.00 4.40
1481 1502 2.548920 CGAGTTTGGCAAGAGGAGAACT 60.549 50.000 0.00 0.00 0.00 3.01
1550 1571 2.730672 CTTCGCCTGTGCTACGTGC 61.731 63.158 0.00 0.00 43.25 5.34
1681 1702 3.901222 TCAGATGTTTCACCAGTACCTGA 59.099 43.478 0.00 0.00 32.44 3.86
1690 1711 2.094894 CAGCACGATCAGATGTTTCACC 59.905 50.000 0.00 0.00 0.00 4.02
1732 1753 0.609957 TCTCGTGGTACATCCGGTGT 60.610 55.000 13.10 13.10 44.52 4.16
1844 1865 1.000827 GATGCTCTCGATGGTCGACAT 60.001 52.381 18.91 8.99 44.82 3.06
1985 2006 9.482175 AGTCCAGAGAAATTACTACTATGACTT 57.518 33.333 0.00 0.00 0.00 3.01
2116 3589 9.301153 CTTTTTGCTGTATATGGGTTAATCAAC 57.699 33.333 0.00 0.00 0.00 3.18
2151 3624 9.649167 GTCTAAGACTACTTGCTAAACCATAAA 57.351 33.333 0.00 0.00 37.53 1.40
2202 3675 0.897621 AAAAGGGCTTGCCATGTAGC 59.102 50.000 14.04 3.77 36.66 3.58
2410 3883 1.407851 GGCATGGTGAGCTGAAGATCA 60.408 52.381 0.00 0.00 38.23 2.92
2426 3899 1.547472 GGGAAGCAAGCTTTGGGCAT 61.547 55.000 8.91 0.00 44.79 4.40
2477 3950 6.084738 TGCCTATCTTGGTATCTTCAGGTAT 58.915 40.000 0.00 0.00 0.00 2.73
2520 3998 2.601314 CACGTCCAATTCGAAATCGCTA 59.399 45.455 0.00 0.00 39.60 4.26
2529 4007 5.024768 TCATTGTTAACACGTCCAATTCG 57.975 39.130 8.07 0.00 0.00 3.34
2532 4010 4.647611 TCCTCATTGTTAACACGTCCAAT 58.352 39.130 8.07 0.00 0.00 3.16
2534 4012 3.556213 CCTCCTCATTGTTAACACGTCCA 60.556 47.826 8.07 0.00 0.00 4.02
2535 4013 3.000727 CCTCCTCATTGTTAACACGTCC 58.999 50.000 8.07 0.00 0.00 4.79
2538 4016 3.056107 TCCTCCTCCTCATTGTTAACACG 60.056 47.826 8.07 2.69 0.00 4.49
2540 4018 3.907474 TGTCCTCCTCCTCATTGTTAACA 59.093 43.478 3.59 3.59 0.00 2.41
2541 4019 4.553330 TGTCCTCCTCCTCATTGTTAAC 57.447 45.455 0.00 0.00 0.00 2.01
2549 4027 2.537143 GTACCTTTGTCCTCCTCCTCA 58.463 52.381 0.00 0.00 0.00 3.86
2602 4080 6.542370 GTGGTGCTGTTCATATAACTATTGGT 59.458 38.462 0.00 0.00 0.00 3.67
2605 4083 7.229306 CCATGTGGTGCTGTTCATATAACTATT 59.771 37.037 0.00 0.00 0.00 1.73
2731 4209 1.835267 ACCAGTAGCACACCACCGA 60.835 57.895 0.00 0.00 0.00 4.69
2733 4211 0.324943 ATCACCAGTAGCACACCACC 59.675 55.000 0.00 0.00 0.00 4.61
2901 4379 0.317020 GGCTCGTTGTTCTGTTGCAC 60.317 55.000 0.00 0.00 0.00 4.57
2922 4400 5.157770 ACATAGATAGAAAGAGGACCCCA 57.842 43.478 0.00 0.00 0.00 4.96
2957 4435 6.150140 GATGACCATCTTTTCTGCTTTACAGT 59.850 38.462 2.91 0.00 39.81 3.55
2974 4452 2.885135 TTTGGCTGACAGATGACCAT 57.115 45.000 6.65 0.00 0.00 3.55
2989 4467 5.238650 AGTTAAGTCGTCCTTGTCATTTTGG 59.761 40.000 1.23 0.00 34.46 3.28
2990 4468 6.300354 AGTTAAGTCGTCCTTGTCATTTTG 57.700 37.500 1.23 0.00 34.46 2.44
3003 4481 4.620184 CGCTTAGCTTACAAGTTAAGTCGT 59.380 41.667 20.04 0.00 45.75 4.34
3004 4482 4.490479 GCGCTTAGCTTACAAGTTAAGTCG 60.490 45.833 22.34 22.34 45.75 4.18
3007 4485 4.921470 TGCGCTTAGCTTACAAGTTAAG 57.079 40.909 16.75 16.75 46.35 1.85
3026 4504 4.927425 TCTTCTGTACCTTAAACACGATGC 59.073 41.667 0.00 0.00 0.00 3.91
3043 4521 7.396540 AATTTTAGGCTGGTGTATTCTTCTG 57.603 36.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.