Multiple sequence alignment - TraesCS6D01G103800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G103800 chr6D 100.000 4783 0 0 1 4783 67513509 67518291 0.000000e+00 8833
1 TraesCS6D01G103800 chr6D 86.957 92 12 0 1119 1210 79598498 79598589 2.350000e-18 104
2 TraesCS6D01G103800 chr6A 91.107 3677 220 64 371 3988 85017297 85020925 0.000000e+00 4879
3 TraesCS6D01G103800 chr6A 92.383 814 38 6 3970 4780 85022359 85023151 0.000000e+00 1138
4 TraesCS6D01G103800 chr6A 93.850 374 23 0 1 374 85010613 85010986 8.990000e-157 564
5 TraesCS6D01G103800 chr6B 92.278 3354 184 37 1451 4781 142499825 142503126 0.000000e+00 4689
6 TraesCS6D01G103800 chr6B 88.875 791 32 17 714 1459 142499023 142499802 0.000000e+00 922
7 TraesCS6D01G103800 chr6B 94.054 185 11 0 274 458 142498625 142498809 1.010000e-71 281
8 TraesCS6D01G103800 chr6B 94.350 177 10 0 1 177 142487613 142487789 6.100000e-69 272
9 TraesCS6D01G103800 chr6B 89.172 157 13 4 462 614 142498872 142499028 4.880000e-45 193
10 TraesCS6D01G103800 chr6B 93.478 92 6 0 170 261 142497742 142497833 2.320000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G103800 chr6D 67513509 67518291 4782 False 8833.0 8833 100.0000 1 4783 1 chr6D.!!$F1 4782
1 TraesCS6D01G103800 chr6A 85017297 85023151 5854 False 3008.5 4879 91.7450 371 4780 2 chr6A.!!$F2 4409
2 TraesCS6D01G103800 chr6B 142497742 142503126 5384 False 1244.4 4689 91.5714 170 4781 5 chr6B.!!$F2 4611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 1359 0.042581 ATGATGGTCCCAAAACCCCC 59.957 55.000 0.00 0.00 38.65 5.40 F
867 1712 1.350319 GACAAACGCGCTCACACAA 59.650 52.632 5.73 0.00 0.00 3.33 F
874 1719 1.871039 ACGCGCTCACACAAAAATAGT 59.129 42.857 5.73 0.00 0.00 2.12 F
1417 2310 2.635915 TGGTACACTCCCTGGTTAAGTG 59.364 50.000 15.51 15.51 44.68 3.16 F
2719 3682 2.639327 GGTTGCAGGGGTGCATGTC 61.639 63.158 0.03 0.00 44.94 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 2605 1.009389 GCACAGACGCACAGTAGTCC 61.009 60.000 5.08 0.00 38.08 3.85 R
2467 3430 2.742348 TCACCGGGAAGTAAGAGCATA 58.258 47.619 6.32 0.00 0.00 3.14 R
2641 3604 2.771089 TCATAAGGCATCTTCCATCGC 58.229 47.619 0.00 0.00 34.59 4.58 R
2924 3891 0.318441 GTGCTGAGTGTAGGTCTGCA 59.682 55.000 1.06 1.06 43.95 4.41 R
3821 4811 0.682209 CTGCTACATGGCAAGCCCTT 60.682 55.000 8.89 0.00 41.94 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.988064 TCTCTACAGACATTTTCTTGTATGTC 57.012 34.615 7.99 7.03 46.10 3.06
28 29 8.585018 TCTCTACAGACATTTTCTTGTATGTCA 58.415 33.333 15.22 0.00 46.10 3.58
29 30 9.376075 CTCTACAGACATTTTCTTGTATGTCAT 57.624 33.333 15.22 7.34 46.10 3.06
30 31 9.154847 TCTACAGACATTTTCTTGTATGTCATG 57.845 33.333 15.22 12.47 46.10 3.07
31 32 7.984422 ACAGACATTTTCTTGTATGTCATGA 57.016 32.000 15.22 0.00 46.10 3.07
32 33 8.037382 ACAGACATTTTCTTGTATGTCATGAG 57.963 34.615 15.22 6.68 46.10 2.90
33 34 7.120285 ACAGACATTTTCTTGTATGTCATGAGG 59.880 37.037 15.22 4.56 46.10 3.86
34 35 6.764308 ACATTTTCTTGTATGTCATGAGGG 57.236 37.500 0.00 0.00 33.00 4.30
35 36 5.126061 ACATTTTCTTGTATGTCATGAGGGC 59.874 40.000 0.00 0.00 33.00 5.19
36 37 3.998913 TTCTTGTATGTCATGAGGGCA 57.001 42.857 0.00 0.00 33.00 5.36
37 38 4.508551 TTCTTGTATGTCATGAGGGCAT 57.491 40.909 0.00 0.00 33.00 4.40
48 49 3.845781 ATGAGGGCATGACTATCGTTT 57.154 42.857 0.00 0.00 32.31 3.60
49 50 3.627395 TGAGGGCATGACTATCGTTTT 57.373 42.857 0.00 0.00 0.00 2.43
50 51 4.746535 TGAGGGCATGACTATCGTTTTA 57.253 40.909 0.00 0.00 0.00 1.52
51 52 4.439057 TGAGGGCATGACTATCGTTTTAC 58.561 43.478 0.00 0.00 0.00 2.01
52 53 4.161565 TGAGGGCATGACTATCGTTTTACT 59.838 41.667 0.00 0.00 0.00 2.24
53 54 4.694339 AGGGCATGACTATCGTTTTACTC 58.306 43.478 0.00 0.00 0.00 2.59
54 55 4.161565 AGGGCATGACTATCGTTTTACTCA 59.838 41.667 0.00 0.00 0.00 3.41
55 56 5.057149 GGGCATGACTATCGTTTTACTCAT 58.943 41.667 0.00 0.00 0.00 2.90
56 57 6.041637 AGGGCATGACTATCGTTTTACTCATA 59.958 38.462 0.00 0.00 0.00 2.15
57 58 6.145696 GGGCATGACTATCGTTTTACTCATAC 59.854 42.308 0.00 0.00 0.00 2.39
58 59 6.700081 GGCATGACTATCGTTTTACTCATACA 59.300 38.462 0.00 0.00 0.00 2.29
59 60 7.385205 GGCATGACTATCGTTTTACTCATACAT 59.615 37.037 0.00 0.00 0.00 2.29
60 61 8.765219 GCATGACTATCGTTTTACTCATACATT 58.235 33.333 0.00 0.00 0.00 2.71
63 64 9.863845 TGACTATCGTTTTACTCATACATTTCA 57.136 29.630 0.00 0.00 0.00 2.69
65 66 9.647797 ACTATCGTTTTACTCATACATTTCACA 57.352 29.630 0.00 0.00 0.00 3.58
68 69 7.240674 TCGTTTTACTCATACATTTCACATGC 58.759 34.615 0.00 0.00 0.00 4.06
69 70 7.119116 TCGTTTTACTCATACATTTCACATGCT 59.881 33.333 0.00 0.00 0.00 3.79
70 71 7.426456 CGTTTTACTCATACATTTCACATGCTC 59.574 37.037 0.00 0.00 0.00 4.26
71 72 8.454106 GTTTTACTCATACATTTCACATGCTCT 58.546 33.333 0.00 0.00 0.00 4.09
72 73 7.776933 TTACTCATACATTTCACATGCTCTC 57.223 36.000 0.00 0.00 0.00 3.20
73 74 5.121811 ACTCATACATTTCACATGCTCTCC 58.878 41.667 0.00 0.00 0.00 3.71
74 75 4.122046 TCATACATTTCACATGCTCTCCG 58.878 43.478 0.00 0.00 0.00 4.63
75 76 1.742761 ACATTTCACATGCTCTCCGG 58.257 50.000 0.00 0.00 0.00 5.14
76 77 1.003580 ACATTTCACATGCTCTCCGGT 59.996 47.619 0.00 0.00 0.00 5.28
77 78 2.086869 CATTTCACATGCTCTCCGGTT 58.913 47.619 0.00 0.00 0.00 4.44
78 79 3.270027 CATTTCACATGCTCTCCGGTTA 58.730 45.455 0.00 0.00 0.00 2.85
79 80 2.672961 TTCACATGCTCTCCGGTTAG 57.327 50.000 0.00 0.76 0.00 2.34
80 81 1.557099 TCACATGCTCTCCGGTTAGT 58.443 50.000 0.00 0.00 0.00 2.24
81 82 1.899814 TCACATGCTCTCCGGTTAGTT 59.100 47.619 0.00 0.00 0.00 2.24
82 83 2.094182 TCACATGCTCTCCGGTTAGTTC 60.094 50.000 0.00 0.00 0.00 3.01
83 84 1.899814 ACATGCTCTCCGGTTAGTTCA 59.100 47.619 0.00 0.00 0.00 3.18
84 85 2.501723 ACATGCTCTCCGGTTAGTTCAT 59.498 45.455 0.00 0.00 0.00 2.57
85 86 3.704566 ACATGCTCTCCGGTTAGTTCATA 59.295 43.478 0.00 0.00 0.00 2.15
86 87 4.202161 ACATGCTCTCCGGTTAGTTCATAG 60.202 45.833 0.00 0.00 0.00 2.23
87 88 3.362706 TGCTCTCCGGTTAGTTCATAGT 58.637 45.455 0.00 0.00 0.00 2.12
88 89 3.767673 TGCTCTCCGGTTAGTTCATAGTT 59.232 43.478 0.00 0.00 0.00 2.24
89 90 4.951715 TGCTCTCCGGTTAGTTCATAGTTA 59.048 41.667 0.00 0.00 0.00 2.24
90 91 5.597182 TGCTCTCCGGTTAGTTCATAGTTAT 59.403 40.000 0.00 0.00 0.00 1.89
91 92 5.921408 GCTCTCCGGTTAGTTCATAGTTATG 59.079 44.000 0.00 0.00 35.04 1.90
92 93 6.401047 TCTCCGGTTAGTTCATAGTTATGG 57.599 41.667 0.00 0.00 34.50 2.74
93 94 4.952460 TCCGGTTAGTTCATAGTTATGGC 58.048 43.478 0.00 0.00 34.50 4.40
94 95 4.406326 TCCGGTTAGTTCATAGTTATGGCA 59.594 41.667 0.00 0.00 34.50 4.92
95 96 4.750098 CCGGTTAGTTCATAGTTATGGCAG 59.250 45.833 0.00 0.00 34.50 4.85
96 97 5.452776 CCGGTTAGTTCATAGTTATGGCAGA 60.453 44.000 0.00 0.00 34.50 4.26
97 98 6.223852 CGGTTAGTTCATAGTTATGGCAGAT 58.776 40.000 0.00 0.00 34.50 2.90
98 99 7.375834 CGGTTAGTTCATAGTTATGGCAGATA 58.624 38.462 0.00 0.00 34.50 1.98
99 100 7.542477 CGGTTAGTTCATAGTTATGGCAGATAG 59.458 40.741 0.00 0.00 34.50 2.08
100 101 7.819900 GGTTAGTTCATAGTTATGGCAGATAGG 59.180 40.741 0.00 0.00 34.50 2.57
101 102 8.585881 GTTAGTTCATAGTTATGGCAGATAGGA 58.414 37.037 0.00 0.00 34.50 2.94
102 103 6.998802 AGTTCATAGTTATGGCAGATAGGAC 58.001 40.000 0.00 0.00 34.50 3.85
103 104 6.554982 AGTTCATAGTTATGGCAGATAGGACA 59.445 38.462 0.00 0.00 34.50 4.02
104 105 7.236432 AGTTCATAGTTATGGCAGATAGGACAT 59.764 37.037 0.00 0.00 40.39 3.06
105 106 7.559335 TCATAGTTATGGCAGATAGGACATT 57.441 36.000 0.00 0.00 37.73 2.71
106 107 7.977818 TCATAGTTATGGCAGATAGGACATTT 58.022 34.615 0.00 0.00 37.73 2.32
107 108 7.879677 TCATAGTTATGGCAGATAGGACATTTG 59.120 37.037 0.00 0.00 37.73 2.32
108 109 6.006275 AGTTATGGCAGATAGGACATTTGT 57.994 37.500 0.00 0.00 37.73 2.83
109 110 6.426587 AGTTATGGCAGATAGGACATTTGTT 58.573 36.000 0.00 0.00 37.73 2.83
110 111 6.319658 AGTTATGGCAGATAGGACATTTGTTG 59.680 38.462 0.00 0.00 37.73 3.33
111 112 4.299586 TGGCAGATAGGACATTTGTTGA 57.700 40.909 0.00 0.00 0.00 3.18
112 113 4.264253 TGGCAGATAGGACATTTGTTGAG 58.736 43.478 0.00 0.00 0.00 3.02
113 114 4.263462 TGGCAGATAGGACATTTGTTGAGT 60.263 41.667 0.00 0.00 0.00 3.41
114 115 4.702131 GGCAGATAGGACATTTGTTGAGTT 59.298 41.667 0.00 0.00 0.00 3.01
115 116 5.163713 GGCAGATAGGACATTTGTTGAGTTC 60.164 44.000 0.00 0.00 0.00 3.01
116 117 5.446473 GCAGATAGGACATTTGTTGAGTTCG 60.446 44.000 0.00 0.00 0.00 3.95
117 118 5.063944 CAGATAGGACATTTGTTGAGTTCGG 59.936 44.000 0.00 0.00 0.00 4.30
118 119 3.208747 AGGACATTTGTTGAGTTCGGT 57.791 42.857 0.00 0.00 0.00 4.69
119 120 2.878406 AGGACATTTGTTGAGTTCGGTG 59.122 45.455 0.00 0.00 0.00 4.94
120 121 2.031157 GGACATTTGTTGAGTTCGGTGG 60.031 50.000 0.00 0.00 0.00 4.61
121 122 2.616842 GACATTTGTTGAGTTCGGTGGT 59.383 45.455 0.00 0.00 0.00 4.16
122 123 2.357637 ACATTTGTTGAGTTCGGTGGTG 59.642 45.455 0.00 0.00 0.00 4.17
123 124 1.384525 TTTGTTGAGTTCGGTGGTGG 58.615 50.000 0.00 0.00 0.00 4.61
124 125 1.098712 TTGTTGAGTTCGGTGGTGGC 61.099 55.000 0.00 0.00 0.00 5.01
125 126 1.525077 GTTGAGTTCGGTGGTGGCA 60.525 57.895 0.00 0.00 0.00 4.92
126 127 0.889186 GTTGAGTTCGGTGGTGGCAT 60.889 55.000 0.00 0.00 0.00 4.40
127 128 0.687920 TTGAGTTCGGTGGTGGCATA 59.312 50.000 0.00 0.00 0.00 3.14
128 129 0.908910 TGAGTTCGGTGGTGGCATAT 59.091 50.000 0.00 0.00 0.00 1.78
129 130 1.299541 GAGTTCGGTGGTGGCATATG 58.700 55.000 0.00 0.00 0.00 1.78
130 131 0.908910 AGTTCGGTGGTGGCATATGA 59.091 50.000 6.97 0.00 0.00 2.15
131 132 1.134401 AGTTCGGTGGTGGCATATGAG 60.134 52.381 6.97 0.00 0.00 2.90
132 133 0.463654 TTCGGTGGTGGCATATGAGC 60.464 55.000 6.97 0.00 0.00 4.26
133 134 1.153188 CGGTGGTGGCATATGAGCA 60.153 57.895 6.97 0.00 35.83 4.26
134 135 0.747644 CGGTGGTGGCATATGAGCAA 60.748 55.000 6.97 0.00 35.83 3.91
135 136 1.473258 GGTGGTGGCATATGAGCAAA 58.527 50.000 6.97 0.00 35.83 3.68
136 137 1.406539 GGTGGTGGCATATGAGCAAAG 59.593 52.381 6.97 0.00 35.83 2.77
137 138 1.406539 GTGGTGGCATATGAGCAAAGG 59.593 52.381 6.97 0.00 35.83 3.11
138 139 1.035139 GGTGGCATATGAGCAAAGGG 58.965 55.000 6.97 0.00 35.83 3.95
139 140 1.686115 GGTGGCATATGAGCAAAGGGT 60.686 52.381 6.97 0.00 35.83 4.34
140 141 1.406539 GTGGCATATGAGCAAAGGGTG 59.593 52.381 6.97 0.00 35.83 4.61
141 142 1.005805 TGGCATATGAGCAAAGGGTGT 59.994 47.619 6.97 0.00 35.83 4.16
142 143 2.102578 GGCATATGAGCAAAGGGTGTT 58.897 47.619 6.97 0.00 35.83 3.32
143 144 2.497273 GGCATATGAGCAAAGGGTGTTT 59.503 45.455 6.97 0.00 35.83 2.83
144 145 3.514645 GCATATGAGCAAAGGGTGTTTG 58.485 45.455 6.97 0.00 0.00 2.93
145 146 3.056607 GCATATGAGCAAAGGGTGTTTGT 60.057 43.478 6.97 0.00 0.00 2.83
146 147 4.561326 GCATATGAGCAAAGGGTGTTTGTT 60.561 41.667 6.97 0.00 0.00 2.83
147 148 3.733443 ATGAGCAAAGGGTGTTTGTTC 57.267 42.857 7.22 7.22 39.20 3.18
148 149 1.403679 TGAGCAAAGGGTGTTTGTTCG 59.596 47.619 9.00 0.00 40.84 3.95
149 150 1.673920 GAGCAAAGGGTGTTTGTTCGA 59.326 47.619 0.00 0.00 31.83 3.71
150 151 2.293399 GAGCAAAGGGTGTTTGTTCGAT 59.707 45.455 0.00 0.00 31.83 3.59
151 152 2.034558 AGCAAAGGGTGTTTGTTCGATG 59.965 45.455 0.00 0.00 0.00 3.84
152 153 2.862140 GCAAAGGGTGTTTGTTCGATGG 60.862 50.000 0.00 0.00 0.00 3.51
153 154 0.958822 AAGGGTGTTTGTTCGATGGC 59.041 50.000 0.00 0.00 0.00 4.40
154 155 0.179004 AGGGTGTTTGTTCGATGGCA 60.179 50.000 0.00 0.00 0.00 4.92
155 156 0.671251 GGGTGTTTGTTCGATGGCAA 59.329 50.000 0.00 0.00 0.00 4.52
156 157 1.272212 GGGTGTTTGTTCGATGGCAAT 59.728 47.619 0.00 0.00 0.00 3.56
157 158 2.288763 GGGTGTTTGTTCGATGGCAATT 60.289 45.455 0.00 0.00 0.00 2.32
158 159 2.986479 GGTGTTTGTTCGATGGCAATTC 59.014 45.455 0.00 0.00 0.00 2.17
159 160 3.551863 GGTGTTTGTTCGATGGCAATTCA 60.552 43.478 0.00 0.00 0.00 2.57
160 161 3.670055 GTGTTTGTTCGATGGCAATTCAG 59.330 43.478 0.00 0.00 0.00 3.02
161 162 2.634982 TTGTTCGATGGCAATTCAGC 57.365 45.000 0.00 0.00 0.00 4.26
162 163 1.532523 TGTTCGATGGCAATTCAGCA 58.467 45.000 0.00 0.00 35.83 4.41
163 164 1.885233 TGTTCGATGGCAATTCAGCAA 59.115 42.857 0.00 0.00 35.83 3.91
164 165 2.095110 TGTTCGATGGCAATTCAGCAAG 60.095 45.455 0.00 0.00 35.83 4.01
165 166 1.825090 TCGATGGCAATTCAGCAAGT 58.175 45.000 0.00 0.00 35.83 3.16
166 167 2.161855 TCGATGGCAATTCAGCAAGTT 58.838 42.857 0.00 0.00 35.83 2.66
167 168 2.095110 TCGATGGCAATTCAGCAAGTTG 60.095 45.455 0.00 0.00 35.83 3.16
168 169 1.997606 GATGGCAATTCAGCAAGTTGC 59.002 47.619 20.44 20.44 45.54 4.17
193 194 5.609423 AGTTTGTTGATGGCAAATAAGCAA 58.391 33.333 0.00 0.00 38.00 3.91
199 200 6.369340 TGTTGATGGCAAATAAGCAAATTCTG 59.631 34.615 0.00 0.00 35.42 3.02
203 204 5.398169 TGGCAAATAAGCAAATTCTGTACG 58.602 37.500 0.00 0.00 35.83 3.67
222 223 2.839629 CAATACTGCACCTGCGTCA 58.160 52.632 0.00 0.00 45.83 4.35
226 227 2.004583 TACTGCACCTGCGTCATAAC 57.995 50.000 0.00 0.00 45.83 1.89
268 269 2.586792 CCCTGTAGGCAGCCTCAC 59.413 66.667 20.38 14.98 41.26 3.51
269 270 2.586792 CCTGTAGGCAGCCTCACC 59.413 66.667 20.38 8.04 41.26 4.02
270 271 2.293318 CCTGTAGGCAGCCTCACCA 61.293 63.158 20.38 12.58 41.26 4.17
271 272 1.630126 CCTGTAGGCAGCCTCACCAT 61.630 60.000 20.38 0.00 41.26 3.55
272 273 0.463295 CTGTAGGCAGCCTCACCATG 60.463 60.000 20.38 4.32 35.77 3.66
275 1055 0.543277 TAGGCAGCCTCACCATGAAG 59.457 55.000 20.38 0.00 34.61 3.02
278 1058 1.093159 GCAGCCTCACCATGAAGAAG 58.907 55.000 0.00 0.00 0.00 2.85
283 1063 4.574013 CAGCCTCACCATGAAGAAGATAAC 59.426 45.833 0.00 0.00 0.00 1.89
289 1069 6.042777 TCACCATGAAGAAGATAACGATGAC 58.957 40.000 0.00 0.00 0.00 3.06
294 1074 7.278646 CCATGAAGAAGATAACGATGACAAGAA 59.721 37.037 0.00 0.00 0.00 2.52
308 1088 5.366829 TGACAAGAACATGATGCAAAGAG 57.633 39.130 0.00 0.00 0.00 2.85
356 1136 4.397730 TCGGTTAATGGATGACATGTTTGG 59.602 41.667 0.00 0.00 40.44 3.28
493 1332 1.678728 CGTGTAATCATGGCCACCACT 60.679 52.381 8.16 0.00 35.80 4.00
515 1355 4.954875 TGTTTCAATGATGGTCCCAAAAC 58.045 39.130 0.00 0.00 0.00 2.43
519 1359 0.042581 ATGATGGTCCCAAAACCCCC 59.957 55.000 0.00 0.00 38.65 5.40
522 1362 2.026208 ATGGTCCCAAAACCCCCGTT 62.026 55.000 0.00 0.00 38.65 4.44
529 1369 3.424780 AAAACCCCCGTTGGCGACT 62.425 57.895 2.89 0.00 41.33 4.18
607 1451 7.554118 ACACGGTCTTGAAGATGATATTTTGAT 59.446 33.333 0.00 0.00 0.00 2.57
716 1561 8.296000 TGTGATAGTAACAAATGACCAAACATG 58.704 33.333 0.00 0.00 0.00 3.21
867 1712 1.350319 GACAAACGCGCTCACACAA 59.650 52.632 5.73 0.00 0.00 3.33
874 1719 1.871039 ACGCGCTCACACAAAAATAGT 59.129 42.857 5.73 0.00 0.00 2.12
1203 2078 3.941188 CCCCAGCAGGTGACGTGT 61.941 66.667 7.15 0.00 0.00 4.49
1413 2306 3.263369 TCTTGGTACACTCCCTGGTTA 57.737 47.619 0.00 0.00 39.29 2.85
1414 2307 3.589641 TCTTGGTACACTCCCTGGTTAA 58.410 45.455 0.00 0.00 39.29 2.01
1415 2308 3.581332 TCTTGGTACACTCCCTGGTTAAG 59.419 47.826 0.00 0.00 39.29 1.85
1416 2309 2.980548 TGGTACACTCCCTGGTTAAGT 58.019 47.619 0.00 0.00 0.00 2.24
1417 2310 2.635915 TGGTACACTCCCTGGTTAAGTG 59.364 50.000 15.51 15.51 44.68 3.16
1447 2351 7.663501 ATATGGGGTTAAATTACAGGGATCT 57.336 36.000 0.00 0.00 0.00 2.75
1552 2501 3.532232 AGACCCCTAGTTGTCCTCAGATA 59.468 47.826 5.52 0.00 31.76 1.98
1560 2509 7.175990 CCCTAGTTGTCCTCAGATATCTAGTTC 59.824 44.444 4.54 0.00 34.28 3.01
1584 2533 6.479990 TCGACAATTTGCTGGACATATCTTAG 59.520 38.462 0.00 0.00 0.00 2.18
1598 2554 8.185505 GGACATATCTTAGTTCGGATGATAGTC 58.814 40.741 0.00 0.00 0.00 2.59
1648 2605 5.895636 TTGTGTGCCTATTGAGTATTTGG 57.104 39.130 0.00 0.00 0.00 3.28
1683 2644 5.120830 CGTCTGTGCTATTCTAATTATGCCC 59.879 44.000 0.00 0.00 0.00 5.36
1722 2683 8.628280 TGAACTGATCAATTTGTCATACACAAA 58.372 29.630 0.00 2.55 44.86 2.83
1769 2730 3.514706 TGCAGGTTATGTTGAATTGGCAT 59.485 39.130 0.00 0.00 0.00 4.40
1797 2758 7.233689 TCTTGATTTTGTATTTGATCGTGTCG 58.766 34.615 0.00 0.00 0.00 4.35
1972 2934 4.592942 TGAATTCACTTGATCCCAGAAGG 58.407 43.478 3.38 0.00 0.00 3.46
2018 2980 7.177184 TCCTGTGTGTTATCCTACAGTACTTA 58.823 38.462 0.00 0.00 39.02 2.24
2044 3006 5.184892 AGTCCTCATTCATAGCTTTGGTT 57.815 39.130 4.23 0.00 0.00 3.67
2052 3014 8.044060 TCATTCATAGCTTTGGTTTTAGACAG 57.956 34.615 4.23 0.00 0.00 3.51
2087 3050 3.316308 ACAAGTTCATCAACTGCTGAACC 59.684 43.478 18.16 5.68 46.51 3.62
2093 3056 3.264193 TCATCAACTGCTGAACCCTATGT 59.736 43.478 0.00 0.00 37.67 2.29
2122 3085 4.991153 TGTTTTACAGGTGCACATTTCA 57.009 36.364 20.43 3.68 0.00 2.69
2269 3232 5.661056 ACAGCTACTTAATGTACAGCTCA 57.339 39.130 0.33 0.00 38.22 4.26
2614 3577 7.703058 TGAAAAGGAGAGGATACCATTTTTC 57.297 36.000 0.00 0.00 29.27 2.29
2641 3604 8.037382 AGTCTGGATTTCAATCATATAATGCG 57.963 34.615 2.04 0.00 37.15 4.73
2719 3682 2.639327 GGTTGCAGGGGTGCATGTC 61.639 63.158 0.03 0.00 44.94 3.06
2802 3765 5.247792 AGGTTCGTAACTTCCTAACTCCATT 59.752 40.000 0.00 0.00 0.00 3.16
2807 3770 6.816640 TCGTAACTTCCTAACTCCATTTCATG 59.183 38.462 0.00 0.00 0.00 3.07
2816 3779 4.877378 ACTCCATTTCATGTTGCATTGT 57.123 36.364 0.00 0.00 0.00 2.71
2819 3782 5.477984 ACTCCATTTCATGTTGCATTGTAGT 59.522 36.000 0.00 0.00 0.00 2.73
2821 3784 7.176515 ACTCCATTTCATGTTGCATTGTAGTTA 59.823 33.333 0.00 0.00 0.00 2.24
2828 3791 5.856126 TGTTGCATTGTAGTTACTGCTAC 57.144 39.130 1.72 2.13 41.13 3.58
2832 3795 7.012894 TGTTGCATTGTAGTTACTGCTACTTTT 59.987 33.333 14.23 0.00 41.27 2.27
2835 3798 7.012894 TGCATTGTAGTTACTGCTACTTTTTGT 59.987 33.333 1.72 0.00 41.27 2.83
2837 3800 9.807386 CATTGTAGTTACTGCTACTTTTTGTAC 57.193 33.333 1.72 0.00 41.27 2.90
2841 3804 9.199982 GTAGTTACTGCTACTTTTTGTACATCA 57.800 33.333 0.00 0.00 38.54 3.07
2912 3879 8.362639 ACTTTTTCTAGAAACGTATAGTGACCA 58.637 33.333 17.51 0.00 0.00 4.02
2916 3883 7.035840 TCTAGAAACGTATAGTGACCATTCC 57.964 40.000 0.00 0.00 0.00 3.01
2918 3885 5.903810 AGAAACGTATAGTGACCATTCCTC 58.096 41.667 0.00 0.00 0.00 3.71
2919 3886 5.421056 AGAAACGTATAGTGACCATTCCTCA 59.579 40.000 0.00 0.00 0.00 3.86
2921 3888 6.971726 AACGTATAGTGACCATTCCTCATA 57.028 37.500 0.00 0.00 0.00 2.15
2922 3889 6.576662 ACGTATAGTGACCATTCCTCATAG 57.423 41.667 0.00 0.00 0.00 2.23
2923 3890 6.069331 ACGTATAGTGACCATTCCTCATAGT 58.931 40.000 0.00 0.00 0.00 2.12
2924 3891 6.550108 ACGTATAGTGACCATTCCTCATAGTT 59.450 38.462 0.00 0.00 0.00 2.24
2925 3892 6.863645 CGTATAGTGACCATTCCTCATAGTTG 59.136 42.308 0.00 0.00 0.00 3.16
2926 3893 3.878778 AGTGACCATTCCTCATAGTTGC 58.121 45.455 0.00 0.00 0.00 4.17
2927 3894 3.264193 AGTGACCATTCCTCATAGTTGCA 59.736 43.478 0.00 0.00 0.00 4.08
2928 3895 3.624861 GTGACCATTCCTCATAGTTGCAG 59.375 47.826 0.00 0.00 0.00 4.41
2939 3906 4.086457 TCATAGTTGCAGACCTACACTCA 58.914 43.478 0.00 0.00 0.00 3.41
2941 3908 1.001406 AGTTGCAGACCTACACTCAGC 59.999 52.381 0.00 0.00 0.00 4.26
2948 3915 4.677584 CAGACCTACACTCAGCACTTATC 58.322 47.826 0.00 0.00 0.00 1.75
2953 3920 7.178628 AGACCTACACTCAGCACTTATCTTAAA 59.821 37.037 0.00 0.00 0.00 1.52
2955 3922 7.982354 ACCTACACTCAGCACTTATCTTAAATC 59.018 37.037 0.00 0.00 0.00 2.17
2982 3952 6.956299 TGTGACTACGAGTTAATTTTAGGC 57.044 37.500 0.00 0.00 0.00 3.93
2983 3953 6.694447 TGTGACTACGAGTTAATTTTAGGCT 58.306 36.000 0.00 0.00 0.00 4.58
2996 3966 8.957466 GTTAATTTTAGGCTGGTGTATTCTTCT 58.043 33.333 0.00 0.00 0.00 2.85
2997 3967 7.396540 AATTTTAGGCTGGTGTATTCTTCTG 57.603 36.000 0.00 0.00 0.00 3.02
3014 3987 4.927425 TCTTCTGTACCTTAAACACGATGC 59.073 41.667 0.00 0.00 0.00 3.91
3033 4006 4.921470 TGCGCTTAGCTTACAAGTTAAG 57.079 40.909 16.75 16.75 46.35 1.85
3034 4007 4.312443 TGCGCTTAGCTTACAAGTTAAGT 58.688 39.130 20.04 0.00 45.75 2.24
3035 4008 4.387862 TGCGCTTAGCTTACAAGTTAAGTC 59.612 41.667 20.04 14.77 45.75 3.01
3036 4009 4.490479 GCGCTTAGCTTACAAGTTAAGTCG 60.490 45.833 22.34 22.34 45.75 4.18
3037 4010 4.620184 CGCTTAGCTTACAAGTTAAGTCGT 59.380 41.667 20.04 0.00 45.75 4.34
3038 4011 5.219987 CGCTTAGCTTACAAGTTAAGTCGTC 60.220 44.000 20.04 8.27 45.75 4.20
3039 4012 5.061933 GCTTAGCTTACAAGTTAAGTCGTCC 59.938 44.000 20.04 6.15 45.75 4.79
3040 4013 4.868314 AGCTTACAAGTTAAGTCGTCCT 57.132 40.909 0.00 0.00 0.00 3.85
3041 4014 5.211174 AGCTTACAAGTTAAGTCGTCCTT 57.789 39.130 0.00 0.00 37.17 3.36
3042 4015 4.989168 AGCTTACAAGTTAAGTCGTCCTTG 59.011 41.667 0.00 0.00 40.05 3.61
3050 4032 6.300354 AGTTAAGTCGTCCTTGTCATTTTG 57.700 37.500 1.23 0.00 34.46 2.44
3051 4033 5.238650 AGTTAAGTCGTCCTTGTCATTTTGG 59.761 40.000 1.23 0.00 34.46 3.28
3066 4048 2.885135 TTTGGCTGACAGATGACCAT 57.115 45.000 6.65 0.00 0.00 3.55
3083 4065 6.150140 GATGACCATCTTTTCTGCTTTACAGT 59.850 38.462 2.91 0.00 39.81 3.55
3118 4100 5.157770 ACATAGATAGAAAGAGGACCCCA 57.842 43.478 0.00 0.00 0.00 4.96
3139 4121 0.317020 GGCTCGTTGTTCTGTTGCAC 60.317 55.000 0.00 0.00 0.00 4.57
3307 4289 0.324943 ATCACCAGTAGCACACCACC 59.675 55.000 0.00 0.00 0.00 4.61
3309 4291 1.835267 ACCAGTAGCACACCACCGA 60.835 57.895 0.00 0.00 0.00 4.69
3435 4417 7.229306 CCATGTGGTGCTGTTCATATAACTATT 59.771 37.037 0.00 0.00 0.00 1.73
3438 4420 6.542370 GTGGTGCTGTTCATATAACTATTGGT 59.458 38.462 0.00 0.00 0.00 3.67
3491 4473 2.537143 GTACCTTTGTCCTCCTCCTCA 58.463 52.381 0.00 0.00 0.00 3.86
3499 4481 4.553330 TGTCCTCCTCCTCATTGTTAAC 57.447 45.455 0.00 0.00 0.00 2.01
3500 4482 3.907474 TGTCCTCCTCCTCATTGTTAACA 59.093 43.478 3.59 3.59 0.00 2.41
3502 4484 3.056107 TCCTCCTCCTCATTGTTAACACG 60.056 47.826 8.07 2.69 0.00 4.49
3505 4487 3.000727 CCTCCTCATTGTTAACACGTCC 58.999 50.000 8.07 0.00 0.00 4.79
3506 4488 3.556213 CCTCCTCATTGTTAACACGTCCA 60.556 47.826 8.07 0.00 0.00 4.02
3508 4490 4.647611 TCCTCATTGTTAACACGTCCAAT 58.352 39.130 8.07 0.00 0.00 3.16
3511 4493 5.024768 TCATTGTTAACACGTCCAATTCG 57.975 39.130 8.07 0.00 0.00 3.34
3520 4502 2.601314 CACGTCCAATTCGAAATCGCTA 59.399 45.455 0.00 0.00 39.60 4.26
3563 4550 6.084738 TGCCTATCTTGGTATCTTCAGGTAT 58.915 40.000 0.00 0.00 0.00 2.73
3614 4601 1.547472 GGGAAGCAAGCTTTGGGCAT 61.547 55.000 8.91 0.00 44.79 4.40
3630 4617 1.407851 GGCATGGTGAGCTGAAGATCA 60.408 52.381 0.00 0.00 38.23 2.92
3742 4729 2.740055 GCAGTGCGTCCAGGACAG 60.740 66.667 20.13 12.91 44.28 3.51
3743 4730 2.740055 CAGTGCGTCCAGGACAGC 60.740 66.667 20.13 21.43 44.28 4.40
3744 4731 3.233980 AGTGCGTCCAGGACAGCA 61.234 61.111 25.85 25.85 44.28 4.41
3838 4828 0.897621 AAAAGGGCTTGCCATGTAGC 59.102 50.000 14.04 3.77 36.66 3.58
3889 4879 9.649167 GTCTAAGACTACTTGCTAAACCATAAA 57.351 33.333 0.00 0.00 37.53 1.40
3924 4914 9.301153 CTTTTTGCTGTATATGGGTTAATCAAC 57.699 33.333 0.00 0.00 0.00 3.18
4055 6497 9.482175 AGTCCAGAGAAATTACTACTATGACTT 57.518 33.333 0.00 0.00 0.00 3.01
4196 6638 1.000827 GATGCTCTCGATGGTCGACAT 60.001 52.381 18.91 8.99 44.82 3.06
4308 6750 0.609957 TCTCGTGGTACATCCGGTGT 60.610 55.000 13.10 13.10 44.52 4.16
4350 6792 2.094894 CAGCACGATCAGATGTTTCACC 59.905 50.000 0.00 0.00 0.00 4.02
4359 6801 3.901222 TCAGATGTTTCACCAGTACCTGA 59.099 43.478 0.00 0.00 32.44 3.86
4490 6932 2.730672 CTTCGCCTGTGCTACGTGC 61.731 63.158 0.00 0.00 43.25 5.34
4559 7001 2.548920 CGAGTTTGGCAAGAGGAGAACT 60.549 50.000 0.00 0.00 0.00 3.01
4623 7065 1.736586 GATGTCGATCCGGAGCTGT 59.263 57.895 19.08 0.00 0.00 4.40
4719 7164 1.729149 GCATTTTCAGTTTCTCCGCCG 60.729 52.381 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.778741 ACATACAAGAAAATGTCTGTAGAGAAA 57.221 29.630 0.00 0.00 38.42 2.52
1 2 9.424319 GACATACAAGAAAATGTCTGTAGAGAA 57.576 33.333 7.93 0.00 45.52 2.87
2 3 8.988064 GACATACAAGAAAATGTCTGTAGAGA 57.012 34.615 7.93 0.00 45.52 3.10
11 12 5.126061 GCCCTCATGACATACAAGAAAATGT 59.874 40.000 0.00 0.00 39.00 2.71
12 13 5.125900 TGCCCTCATGACATACAAGAAAATG 59.874 40.000 0.00 0.00 0.00 2.32
13 14 5.263599 TGCCCTCATGACATACAAGAAAAT 58.736 37.500 0.00 0.00 0.00 1.82
14 15 4.661222 TGCCCTCATGACATACAAGAAAA 58.339 39.130 0.00 0.00 0.00 2.29
15 16 4.299586 TGCCCTCATGACATACAAGAAA 57.700 40.909 0.00 0.00 0.00 2.52
16 17 3.998913 TGCCCTCATGACATACAAGAA 57.001 42.857 0.00 0.00 0.00 2.52
42 43 7.910162 GCATGTGAAATGTATGAGTAAAACGAT 59.090 33.333 0.00 0.00 0.00 3.73
43 44 7.119116 AGCATGTGAAATGTATGAGTAAAACGA 59.881 33.333 0.00 0.00 0.00 3.85
44 45 7.243487 AGCATGTGAAATGTATGAGTAAAACG 58.757 34.615 0.00 0.00 0.00 3.60
45 46 8.454106 AGAGCATGTGAAATGTATGAGTAAAAC 58.546 33.333 0.00 0.00 0.00 2.43
46 47 8.565896 AGAGCATGTGAAATGTATGAGTAAAA 57.434 30.769 0.00 0.00 0.00 1.52
47 48 7.280876 GGAGAGCATGTGAAATGTATGAGTAAA 59.719 37.037 0.00 0.00 0.00 2.01
48 49 6.763135 GGAGAGCATGTGAAATGTATGAGTAA 59.237 38.462 0.00 0.00 0.00 2.24
49 50 6.283694 GGAGAGCATGTGAAATGTATGAGTA 58.716 40.000 0.00 0.00 0.00 2.59
50 51 5.121811 GGAGAGCATGTGAAATGTATGAGT 58.878 41.667 0.00 0.00 0.00 3.41
51 52 4.210746 CGGAGAGCATGTGAAATGTATGAG 59.789 45.833 0.00 0.00 0.00 2.90
52 53 4.122046 CGGAGAGCATGTGAAATGTATGA 58.878 43.478 0.00 0.00 0.00 2.15
53 54 3.249320 CCGGAGAGCATGTGAAATGTATG 59.751 47.826 0.00 0.00 0.00 2.39
54 55 3.118261 ACCGGAGAGCATGTGAAATGTAT 60.118 43.478 9.46 0.00 0.00 2.29
55 56 2.236146 ACCGGAGAGCATGTGAAATGTA 59.764 45.455 9.46 0.00 0.00 2.29
56 57 1.003580 ACCGGAGAGCATGTGAAATGT 59.996 47.619 9.46 0.00 0.00 2.71
57 58 1.742761 ACCGGAGAGCATGTGAAATG 58.257 50.000 9.46 0.00 0.00 2.32
58 59 2.496899 AACCGGAGAGCATGTGAAAT 57.503 45.000 9.46 0.00 0.00 2.17
59 60 2.301870 ACTAACCGGAGAGCATGTGAAA 59.698 45.455 9.46 0.00 0.00 2.69
60 61 1.899814 ACTAACCGGAGAGCATGTGAA 59.100 47.619 9.46 0.00 0.00 3.18
61 62 1.557099 ACTAACCGGAGAGCATGTGA 58.443 50.000 9.46 0.00 0.00 3.58
62 63 2.271800 GAACTAACCGGAGAGCATGTG 58.728 52.381 9.46 0.00 0.00 3.21
63 64 1.899814 TGAACTAACCGGAGAGCATGT 59.100 47.619 9.46 0.00 0.00 3.21
64 65 2.672961 TGAACTAACCGGAGAGCATG 57.327 50.000 9.46 0.00 0.00 4.06
65 66 3.961408 ACTATGAACTAACCGGAGAGCAT 59.039 43.478 9.46 7.96 0.00 3.79
66 67 3.362706 ACTATGAACTAACCGGAGAGCA 58.637 45.455 9.46 0.05 0.00 4.26
67 68 4.388378 AACTATGAACTAACCGGAGAGC 57.612 45.455 9.46 0.00 0.00 4.09
68 69 6.448006 CCATAACTATGAACTAACCGGAGAG 58.552 44.000 9.46 7.21 35.75 3.20
69 70 5.221382 GCCATAACTATGAACTAACCGGAGA 60.221 44.000 9.46 0.00 35.75 3.71
70 71 4.989168 GCCATAACTATGAACTAACCGGAG 59.011 45.833 9.46 0.00 35.75 4.63
71 72 4.406326 TGCCATAACTATGAACTAACCGGA 59.594 41.667 9.46 0.00 35.75 5.14
72 73 4.699637 TGCCATAACTATGAACTAACCGG 58.300 43.478 0.00 0.00 35.75 5.28
73 74 5.597806 TCTGCCATAACTATGAACTAACCG 58.402 41.667 0.00 0.00 35.75 4.44
74 75 7.819900 CCTATCTGCCATAACTATGAACTAACC 59.180 40.741 0.00 0.00 35.75 2.85
75 76 8.585881 TCCTATCTGCCATAACTATGAACTAAC 58.414 37.037 0.00 0.00 35.75 2.34
76 77 8.585881 GTCCTATCTGCCATAACTATGAACTAA 58.414 37.037 0.00 0.00 35.75 2.24
77 78 7.728532 TGTCCTATCTGCCATAACTATGAACTA 59.271 37.037 0.00 0.00 35.75 2.24
78 79 6.554982 TGTCCTATCTGCCATAACTATGAACT 59.445 38.462 0.00 0.00 35.75 3.01
79 80 6.759272 TGTCCTATCTGCCATAACTATGAAC 58.241 40.000 0.00 0.00 35.75 3.18
80 81 6.994421 TGTCCTATCTGCCATAACTATGAA 57.006 37.500 0.00 0.00 35.75 2.57
81 82 7.559335 AATGTCCTATCTGCCATAACTATGA 57.441 36.000 0.00 0.00 35.75 2.15
82 83 7.663081 ACAAATGTCCTATCTGCCATAACTATG 59.337 37.037 0.00 0.00 0.00 2.23
83 84 7.749666 ACAAATGTCCTATCTGCCATAACTAT 58.250 34.615 0.00 0.00 0.00 2.12
84 85 7.136822 ACAAATGTCCTATCTGCCATAACTA 57.863 36.000 0.00 0.00 0.00 2.24
85 86 6.006275 ACAAATGTCCTATCTGCCATAACT 57.994 37.500 0.00 0.00 0.00 2.24
86 87 6.318648 TCAACAAATGTCCTATCTGCCATAAC 59.681 38.462 0.00 0.00 0.00 1.89
87 88 6.422333 TCAACAAATGTCCTATCTGCCATAA 58.578 36.000 0.00 0.00 0.00 1.90
88 89 6.000246 TCAACAAATGTCCTATCTGCCATA 58.000 37.500 0.00 0.00 0.00 2.74
89 90 4.858850 TCAACAAATGTCCTATCTGCCAT 58.141 39.130 0.00 0.00 0.00 4.40
90 91 4.263462 ACTCAACAAATGTCCTATCTGCCA 60.263 41.667 0.00 0.00 0.00 4.92
91 92 4.265073 ACTCAACAAATGTCCTATCTGCC 58.735 43.478 0.00 0.00 0.00 4.85
92 93 5.446473 CGAACTCAACAAATGTCCTATCTGC 60.446 44.000 0.00 0.00 0.00 4.26
93 94 5.063944 CCGAACTCAACAAATGTCCTATCTG 59.936 44.000 0.00 0.00 0.00 2.90
94 95 5.178797 CCGAACTCAACAAATGTCCTATCT 58.821 41.667 0.00 0.00 0.00 1.98
95 96 4.935808 ACCGAACTCAACAAATGTCCTATC 59.064 41.667 0.00 0.00 0.00 2.08
96 97 4.695455 CACCGAACTCAACAAATGTCCTAT 59.305 41.667 0.00 0.00 0.00 2.57
97 98 4.062293 CACCGAACTCAACAAATGTCCTA 58.938 43.478 0.00 0.00 0.00 2.94
98 99 2.878406 CACCGAACTCAACAAATGTCCT 59.122 45.455 0.00 0.00 0.00 3.85
99 100 2.031157 CCACCGAACTCAACAAATGTCC 60.031 50.000 0.00 0.00 0.00 4.02
100 101 2.616842 ACCACCGAACTCAACAAATGTC 59.383 45.455 0.00 0.00 0.00 3.06
101 102 2.357637 CACCACCGAACTCAACAAATGT 59.642 45.455 0.00 0.00 0.00 2.71
102 103 2.287547 CCACCACCGAACTCAACAAATG 60.288 50.000 0.00 0.00 0.00 2.32
103 104 1.953686 CCACCACCGAACTCAACAAAT 59.046 47.619 0.00 0.00 0.00 2.32
104 105 1.384525 CCACCACCGAACTCAACAAA 58.615 50.000 0.00 0.00 0.00 2.83
105 106 1.098712 GCCACCACCGAACTCAACAA 61.099 55.000 0.00 0.00 0.00 2.83
106 107 1.525077 GCCACCACCGAACTCAACA 60.525 57.895 0.00 0.00 0.00 3.33
107 108 0.889186 ATGCCACCACCGAACTCAAC 60.889 55.000 0.00 0.00 0.00 3.18
108 109 0.687920 TATGCCACCACCGAACTCAA 59.312 50.000 0.00 0.00 0.00 3.02
109 110 0.908910 ATATGCCACCACCGAACTCA 59.091 50.000 0.00 0.00 0.00 3.41
110 111 1.134521 TCATATGCCACCACCGAACTC 60.135 52.381 0.00 0.00 0.00 3.01
111 112 0.908910 TCATATGCCACCACCGAACT 59.091 50.000 0.00 0.00 0.00 3.01
112 113 1.299541 CTCATATGCCACCACCGAAC 58.700 55.000 0.00 0.00 0.00 3.95
113 114 0.463654 GCTCATATGCCACCACCGAA 60.464 55.000 0.00 0.00 0.00 4.30
114 115 1.146041 GCTCATATGCCACCACCGA 59.854 57.895 0.00 0.00 0.00 4.69
115 116 0.747644 TTGCTCATATGCCACCACCG 60.748 55.000 0.00 0.00 0.00 4.94
116 117 1.406539 CTTTGCTCATATGCCACCACC 59.593 52.381 0.00 0.00 0.00 4.61
117 118 1.406539 CCTTTGCTCATATGCCACCAC 59.593 52.381 0.00 0.00 0.00 4.16
118 119 1.685803 CCCTTTGCTCATATGCCACCA 60.686 52.381 0.00 0.00 0.00 4.17
119 120 1.035139 CCCTTTGCTCATATGCCACC 58.965 55.000 0.00 0.00 0.00 4.61
120 121 1.406539 CACCCTTTGCTCATATGCCAC 59.593 52.381 0.00 0.00 0.00 5.01
121 122 1.005805 ACACCCTTTGCTCATATGCCA 59.994 47.619 0.00 0.00 0.00 4.92
122 123 1.767759 ACACCCTTTGCTCATATGCC 58.232 50.000 0.00 0.00 0.00 4.40
123 124 3.056607 ACAAACACCCTTTGCTCATATGC 60.057 43.478 0.00 0.00 32.93 3.14
124 125 4.789012 ACAAACACCCTTTGCTCATATG 57.211 40.909 0.00 0.00 32.93 1.78
125 126 4.082787 CGAACAAACACCCTTTGCTCATAT 60.083 41.667 0.00 0.00 32.93 1.78
126 127 3.252215 CGAACAAACACCCTTTGCTCATA 59.748 43.478 0.00 0.00 32.93 2.15
127 128 2.034558 CGAACAAACACCCTTTGCTCAT 59.965 45.455 0.00 0.00 32.93 2.90
128 129 1.403679 CGAACAAACACCCTTTGCTCA 59.596 47.619 0.00 0.00 32.93 4.26
129 130 1.673920 TCGAACAAACACCCTTTGCTC 59.326 47.619 0.00 0.00 32.93 4.26
130 131 1.757682 TCGAACAAACACCCTTTGCT 58.242 45.000 0.00 0.00 32.93 3.91
131 132 2.393764 CATCGAACAAACACCCTTTGC 58.606 47.619 0.00 0.00 32.93 3.68
132 133 2.862140 GCCATCGAACAAACACCCTTTG 60.862 50.000 0.00 0.00 35.64 2.77
133 134 1.339929 GCCATCGAACAAACACCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
134 135 0.958822 GCCATCGAACAAACACCCTT 59.041 50.000 0.00 0.00 0.00 3.95
135 136 0.179004 TGCCATCGAACAAACACCCT 60.179 50.000 0.00 0.00 0.00 4.34
136 137 0.671251 TTGCCATCGAACAAACACCC 59.329 50.000 0.00 0.00 0.00 4.61
137 138 2.723124 ATTGCCATCGAACAAACACC 57.277 45.000 0.00 0.00 0.00 4.16
138 139 3.637432 TGAATTGCCATCGAACAAACAC 58.363 40.909 0.00 0.00 0.00 3.32
139 140 3.856638 GCTGAATTGCCATCGAACAAACA 60.857 43.478 0.00 0.03 0.00 2.83
140 141 2.663119 GCTGAATTGCCATCGAACAAAC 59.337 45.455 0.00 0.00 0.00 2.93
141 142 2.295629 TGCTGAATTGCCATCGAACAAA 59.704 40.909 0.00 0.00 0.00 2.83
142 143 1.885233 TGCTGAATTGCCATCGAACAA 59.115 42.857 0.00 0.00 0.00 2.83
143 144 1.532523 TGCTGAATTGCCATCGAACA 58.467 45.000 0.00 0.00 0.00 3.18
144 145 2.095059 ACTTGCTGAATTGCCATCGAAC 60.095 45.455 0.00 0.00 0.00 3.95
145 146 2.161855 ACTTGCTGAATTGCCATCGAA 58.838 42.857 0.00 0.00 0.00 3.71
146 147 1.825090 ACTTGCTGAATTGCCATCGA 58.175 45.000 0.00 0.00 0.00 3.59
147 148 2.256174 CAACTTGCTGAATTGCCATCG 58.744 47.619 0.00 0.00 0.00 3.84
148 149 1.997606 GCAACTTGCTGAATTGCCATC 59.002 47.619 6.50 0.00 42.32 3.51
149 150 1.345089 TGCAACTTGCTGAATTGCCAT 59.655 42.857 14.78 0.00 46.53 4.40
150 151 0.751452 TGCAACTTGCTGAATTGCCA 59.249 45.000 14.78 0.00 46.53 4.92
151 152 1.796459 CTTGCAACTTGCTGAATTGCC 59.204 47.619 14.78 0.00 46.53 4.52
152 153 2.476821 ACTTGCAACTTGCTGAATTGC 58.523 42.857 14.78 1.30 45.31 3.56
153 154 4.330620 ACAAACTTGCAACTTGCTGAATTG 59.669 37.500 14.78 15.08 45.31 2.32
154 155 4.506758 ACAAACTTGCAACTTGCTGAATT 58.493 34.783 14.78 3.11 45.31 2.17
155 156 4.127566 ACAAACTTGCAACTTGCTGAAT 57.872 36.364 14.78 0.00 45.31 2.57
156 157 3.591196 ACAAACTTGCAACTTGCTGAA 57.409 38.095 14.78 1.26 45.31 3.02
157 158 3.056962 TCAACAAACTTGCAACTTGCTGA 60.057 39.130 14.78 14.35 45.31 4.26
158 159 3.252400 TCAACAAACTTGCAACTTGCTG 58.748 40.909 14.78 12.50 45.31 4.41
159 160 3.591196 TCAACAAACTTGCAACTTGCT 57.409 38.095 14.78 2.53 45.31 3.91
160 161 3.001533 CCATCAACAAACTTGCAACTTGC 59.998 43.478 13.87 6.82 45.29 4.01
161 162 3.001533 GCCATCAACAAACTTGCAACTTG 59.998 43.478 12.80 12.80 0.00 3.16
162 163 3.197265 GCCATCAACAAACTTGCAACTT 58.803 40.909 0.00 0.00 0.00 2.66
163 164 2.168106 TGCCATCAACAAACTTGCAACT 59.832 40.909 0.00 0.00 0.00 3.16
164 165 2.548875 TGCCATCAACAAACTTGCAAC 58.451 42.857 0.00 0.00 0.00 4.17
165 166 2.975732 TGCCATCAACAAACTTGCAA 57.024 40.000 0.00 0.00 0.00 4.08
166 167 2.975732 TTGCCATCAACAAACTTGCA 57.024 40.000 0.00 0.00 0.00 4.08
167 168 5.615325 GCTTATTTGCCATCAACAAACTTGC 60.615 40.000 0.00 0.00 39.65 4.01
168 169 5.466058 TGCTTATTTGCCATCAACAAACTTG 59.534 36.000 0.00 0.00 39.65 3.16
219 220 2.040178 ACGATCCTCCTGGGTTATGAC 58.960 52.381 0.00 0.00 36.25 3.06
222 223 2.434702 GACAACGATCCTCCTGGGTTAT 59.565 50.000 0.00 0.00 36.25 1.89
226 227 0.461961 GAGACAACGATCCTCCTGGG 59.538 60.000 0.00 0.00 0.00 4.45
261 262 4.681781 CGTTATCTTCTTCATGGTGAGGCT 60.682 45.833 0.00 0.00 0.00 4.58
262 263 3.557595 CGTTATCTTCTTCATGGTGAGGC 59.442 47.826 0.00 0.00 0.00 4.70
264 265 6.199908 GTCATCGTTATCTTCTTCATGGTGAG 59.800 42.308 0.00 0.00 0.00 3.51
265 266 6.042777 GTCATCGTTATCTTCTTCATGGTGA 58.957 40.000 0.00 0.00 0.00 4.02
266 267 5.812127 TGTCATCGTTATCTTCTTCATGGTG 59.188 40.000 0.00 0.00 0.00 4.17
267 268 5.977635 TGTCATCGTTATCTTCTTCATGGT 58.022 37.500 0.00 0.00 0.00 3.55
268 269 6.758416 TCTTGTCATCGTTATCTTCTTCATGG 59.242 38.462 0.00 0.00 0.00 3.66
269 270 7.761651 TCTTGTCATCGTTATCTTCTTCATG 57.238 36.000 0.00 0.00 0.00 3.07
270 271 7.819415 TGTTCTTGTCATCGTTATCTTCTTCAT 59.181 33.333 0.00 0.00 0.00 2.57
271 272 7.151976 TGTTCTTGTCATCGTTATCTTCTTCA 58.848 34.615 0.00 0.00 0.00 3.02
272 273 7.582435 TGTTCTTGTCATCGTTATCTTCTTC 57.418 36.000 0.00 0.00 0.00 2.87
275 1055 7.525688 TCATGTTCTTGTCATCGTTATCTTC 57.474 36.000 0.00 0.00 0.00 2.87
278 1058 6.132056 GCATCATGTTCTTGTCATCGTTATC 58.868 40.000 0.00 0.00 0.00 1.75
283 1063 4.345271 TTGCATCATGTTCTTGTCATCG 57.655 40.909 0.00 0.00 0.00 3.84
308 1088 2.126734 GGCTCATGTTGCGTGTGC 60.127 61.111 6.79 6.79 38.60 4.57
356 1136 3.637769 AGTCTCCTCATAGAACCACTCC 58.362 50.000 0.00 0.00 0.00 3.85
454 1234 5.340803 ACACGGCTCTTCTTTTTCTTTTTC 58.659 37.500 0.00 0.00 0.00 2.29
460 1240 5.607119 TGATTACACGGCTCTTCTTTTTC 57.393 39.130 0.00 0.00 0.00 2.29
493 1332 4.202305 GGTTTTGGGACCATCATTGAAACA 60.202 41.667 13.15 0.00 39.57 2.83
519 1359 2.423926 ATCTATGCTAGTCGCCAACG 57.576 50.000 0.00 0.00 42.01 4.10
522 1362 4.672587 AAGAAATCTATGCTAGTCGCCA 57.327 40.909 0.00 0.00 38.05 5.69
566 1406 6.963049 AGACCGTGTTATGTCATAAAAGAC 57.037 37.500 6.85 4.27 38.99 3.01
607 1451 4.338964 ACTTGTTTGCACACTGATTGATGA 59.661 37.500 4.37 0.00 30.32 2.92
701 1546 5.676532 ACATTTGCATGTTTGGTCATTTG 57.323 34.783 0.00 0.00 41.16 2.32
716 1561 8.770438 TTGGATTTTATGAGGTAAACATTTGC 57.230 30.769 0.00 0.00 32.17 3.68
814 1659 5.236263 GGGTGGCTTTTAAACATGACAAAAG 59.764 40.000 18.41 18.41 40.57 2.27
820 1665 4.219115 TCAAGGGTGGCTTTTAAACATGA 58.781 39.130 0.00 0.00 0.00 3.07
826 1671 5.541868 TCATGATTTCAAGGGTGGCTTTTAA 59.458 36.000 0.00 0.00 0.00 1.52
874 1719 6.192044 ACCTGGTGGTTCTCTTTTTCTTTTA 58.808 36.000 0.00 0.00 46.05 1.52
1021 1878 2.366570 GAGGAGGAGCAGGAGGGT 59.633 66.667 0.00 0.00 0.00 4.34
1390 2283 2.986728 ACCAGGGAGTGTACCAAGAAAT 59.013 45.455 0.00 0.00 0.00 2.17
1421 2314 9.364302 AGATCCCTGTAATTTAACCCCATATAT 57.636 33.333 0.00 0.00 0.00 0.86
1422 2315 8.766492 AGATCCCTGTAATTTAACCCCATATA 57.234 34.615 0.00 0.00 0.00 0.86
1423 2316 7.663501 AGATCCCTGTAATTTAACCCCATAT 57.336 36.000 0.00 0.00 0.00 1.78
1424 2317 7.256908 GCTAGATCCCTGTAATTTAACCCCATA 60.257 40.741 0.00 0.00 0.00 2.74
1425 2318 6.467339 GCTAGATCCCTGTAATTTAACCCCAT 60.467 42.308 0.00 0.00 0.00 4.00
1459 2363 7.432148 TGTATGGTGAATTGTAGTACTCCAT 57.568 36.000 0.00 6.18 39.11 3.41
1460 2364 6.860790 TGTATGGTGAATTGTAGTACTCCA 57.139 37.500 0.00 0.00 0.00 3.86
1552 2501 4.631813 GTCCAGCAAATTGTCGAACTAGAT 59.368 41.667 0.00 0.00 0.00 1.98
1560 2509 5.490139 AAGATATGTCCAGCAAATTGTCG 57.510 39.130 0.00 0.00 0.00 4.35
1584 2533 7.657761 ACCATCAAAATAGACTATCATCCGAAC 59.342 37.037 0.00 0.00 0.00 3.95
1598 2554 7.161773 ACATTGAACCTCACCATCAAAATAG 57.838 36.000 0.00 0.00 36.72 1.73
1633 2589 6.986817 CACAGTAGTCCCAAATACTCAATAGG 59.013 42.308 0.00 0.00 29.77 2.57
1648 2605 1.009389 GCACAGACGCACAGTAGTCC 61.009 60.000 5.08 0.00 38.08 3.85
1683 2644 3.616956 TCAGTTCAATCCAGGCTACAG 57.383 47.619 0.00 0.00 0.00 2.74
1722 2683 8.039538 CAGTATGCATACTTCCATCATCTGTAT 58.960 37.037 32.12 7.37 41.44 2.29
1769 2730 8.729756 ACACGATCAAATACAAAATCAAGATGA 58.270 29.630 0.00 0.00 0.00 2.92
1922 2884 4.202223 ACTGAACATTGTGGAACTAGACGT 60.202 41.667 0.00 0.00 38.04 4.34
1972 2934 7.822822 ACAGGATCTGGTACATAAAACTGTAAC 59.177 37.037 7.41 0.00 39.33 2.50
2018 2980 5.416952 CCAAAGCTATGAATGAGGACTTTGT 59.583 40.000 10.58 0.00 40.37 2.83
2122 3085 4.285020 TCATGTGCTTCTCTCCAGATAGT 58.715 43.478 0.00 0.00 0.00 2.12
2210 3173 5.798132 TCCATTAGATGAGGATGTGTATGC 58.202 41.667 0.00 0.00 0.00 3.14
2269 3232 3.814504 ACAACATGGTGGATCTTTCCT 57.185 42.857 16.70 0.00 43.07 3.36
2350 3313 3.451402 GGGGGTGTCTTAAGTTGGAAT 57.549 47.619 1.63 0.00 0.00 3.01
2467 3430 2.742348 TCACCGGGAAGTAAGAGCATA 58.258 47.619 6.32 0.00 0.00 3.14
2614 3577 9.622004 GCATTATATGATTGAAATCCAGACTTG 57.378 33.333 0.72 0.00 34.50 3.16
2641 3604 2.771089 TCATAAGGCATCTTCCATCGC 58.229 47.619 0.00 0.00 34.59 4.58
2802 3765 5.473162 AGCAGTAACTACAATGCAACATGAA 59.527 36.000 0.00 0.00 41.14 2.57
2807 3770 6.481954 AAGTAGCAGTAACTACAATGCAAC 57.518 37.500 0.00 0.00 44.14 4.17
2816 3779 9.767228 TTGATGTACAAAAAGTAGCAGTAACTA 57.233 29.630 0.00 0.00 35.39 2.24
2837 3800 9.170734 TCTTTGAGAGAACATCCTTAATTGATG 57.829 33.333 11.58 11.58 44.13 3.07
2845 3808 9.579932 AGTTTAATTCTTTGAGAGAACATCCTT 57.420 29.630 0.00 0.00 46.66 3.36
2889 3856 9.362539 GAATGGTCACTATACGTTTCTAGAAAA 57.637 33.333 19.30 5.04 31.33 2.29
2890 3857 7.977853 GGAATGGTCACTATACGTTTCTAGAAA 59.022 37.037 13.99 13.99 0.00 2.52
2892 3859 6.832384 AGGAATGGTCACTATACGTTTCTAGA 59.168 38.462 0.00 0.00 0.00 2.43
2900 3867 6.576662 ACTATGAGGAATGGTCACTATACG 57.423 41.667 0.00 0.00 0.00 3.06
2904 3871 4.469586 TGCAACTATGAGGAATGGTCACTA 59.530 41.667 0.00 0.00 0.00 2.74
2912 3879 4.716784 TGTAGGTCTGCAACTATGAGGAAT 59.283 41.667 0.00 0.00 0.00 3.01
2916 3883 4.158579 TGAGTGTAGGTCTGCAACTATGAG 59.841 45.833 0.00 0.00 0.00 2.90
2918 3885 4.428209 CTGAGTGTAGGTCTGCAACTATG 58.572 47.826 0.00 0.00 0.00 2.23
2919 3886 3.118956 GCTGAGTGTAGGTCTGCAACTAT 60.119 47.826 0.00 0.00 38.41 2.12
2921 3888 1.001406 GCTGAGTGTAGGTCTGCAACT 59.999 52.381 0.00 0.00 38.41 3.16
2922 3889 1.270305 TGCTGAGTGTAGGTCTGCAAC 60.270 52.381 2.59 0.00 43.42 4.17
2923 3890 1.047801 TGCTGAGTGTAGGTCTGCAA 58.952 50.000 2.59 0.00 43.42 4.08
2924 3891 0.318441 GTGCTGAGTGTAGGTCTGCA 59.682 55.000 1.06 1.06 43.95 4.41
2925 3892 0.605589 AGTGCTGAGTGTAGGTCTGC 59.394 55.000 0.00 0.00 38.86 4.26
2926 3893 4.400884 AGATAAGTGCTGAGTGTAGGTCTG 59.599 45.833 0.00 0.00 0.00 3.51
2927 3894 4.605183 AGATAAGTGCTGAGTGTAGGTCT 58.395 43.478 0.00 0.00 0.00 3.85
2928 3895 4.993029 AGATAAGTGCTGAGTGTAGGTC 57.007 45.455 0.00 0.00 0.00 3.85
2958 3925 7.277981 CAGCCTAAAATTAACTCGTAGTCACAT 59.722 37.037 0.00 0.00 0.00 3.21
2962 3929 6.035758 CACCAGCCTAAAATTAACTCGTAGTC 59.964 42.308 0.00 0.00 0.00 2.59
2966 3933 4.648651 ACACCAGCCTAAAATTAACTCGT 58.351 39.130 0.00 0.00 0.00 4.18
2967 3934 6.920569 ATACACCAGCCTAAAATTAACTCG 57.079 37.500 0.00 0.00 0.00 4.18
2979 3949 3.197983 GGTACAGAAGAATACACCAGCCT 59.802 47.826 0.00 0.00 0.00 4.58
2982 3952 7.876068 TGTTTAAGGTACAGAAGAATACACCAG 59.124 37.037 0.00 0.00 0.00 4.00
2983 3953 7.658575 GTGTTTAAGGTACAGAAGAATACACCA 59.341 37.037 0.00 0.00 0.00 4.17
2996 3966 1.727880 GCGCATCGTGTTTAAGGTACA 59.272 47.619 0.30 0.00 0.00 2.90
2997 3967 1.997606 AGCGCATCGTGTTTAAGGTAC 59.002 47.619 11.47 0.00 0.00 3.34
3014 3987 4.620184 ACGACTTAACTTGTAAGCTAAGCG 59.380 41.667 18.58 18.58 37.92 4.68
3025 3998 5.924475 AATGACAAGGACGACTTAACTTG 57.076 39.130 0.00 0.00 44.32 3.16
3033 4006 1.880027 AGCCAAAATGACAAGGACGAC 59.120 47.619 0.00 0.00 0.00 4.34
3034 4007 1.879380 CAGCCAAAATGACAAGGACGA 59.121 47.619 0.00 0.00 0.00 4.20
3035 4008 1.879380 TCAGCCAAAATGACAAGGACG 59.121 47.619 0.00 0.00 0.00 4.79
3036 4009 3.288809 GTCAGCCAAAATGACAAGGAC 57.711 47.619 1.37 0.00 45.18 3.85
3042 4015 3.119708 GGTCATCTGTCAGCCAAAATGAC 60.120 47.826 17.37 17.37 45.88 3.06
3050 4032 2.706339 AAGATGGTCATCTGTCAGCC 57.294 50.000 13.49 0.00 46.75 4.85
3051 4033 4.094590 CAGAAAAGATGGTCATCTGTCAGC 59.905 45.833 13.49 3.28 46.75 4.26
3083 4065 6.983906 TCTATCTATGTTGGCAAGATCAGA 57.016 37.500 13.67 14.05 32.39 3.27
3118 4100 0.593128 GCAACAGAACAACGAGCCAT 59.407 50.000 0.00 0.00 0.00 4.40
3139 4121 1.662517 TGCTGTTATACCATGGCACG 58.337 50.000 13.04 2.20 0.00 5.34
3307 4289 2.223433 GCCAGAGGCTCAAATTTGATCG 60.223 50.000 20.76 11.62 46.69 3.69
3435 4417 1.074072 CCGGTTTCCACCATCACCA 59.926 57.895 0.00 0.00 44.53 4.17
3438 4420 0.037590 CTTCCCGGTTTCCACCATCA 59.962 55.000 0.00 0.00 44.53 3.07
3480 4462 3.056107 CGTGTTAACAATGAGGAGGAGGA 60.056 47.826 10.51 0.00 0.00 3.71
3481 4463 3.262420 CGTGTTAACAATGAGGAGGAGG 58.738 50.000 10.51 0.00 0.00 4.30
3482 4464 3.926616 ACGTGTTAACAATGAGGAGGAG 58.073 45.455 10.51 0.00 0.00 3.69
3483 4465 3.306502 GGACGTGTTAACAATGAGGAGGA 60.307 47.826 10.51 0.00 0.00 3.71
3491 4473 5.676532 TTCGAATTGGACGTGTTAACAAT 57.323 34.783 10.51 1.10 35.24 2.71
3499 4481 1.393539 AGCGATTTCGAATTGGACGTG 59.606 47.619 0.00 0.00 43.02 4.49
3500 4482 1.722011 AGCGATTTCGAATTGGACGT 58.278 45.000 0.00 0.00 43.02 4.34
3502 4484 5.612709 GCACTATAGCGATTTCGAATTGGAC 60.613 44.000 0.00 0.00 43.02 4.02
3505 4487 4.211164 TGGCACTATAGCGATTTCGAATTG 59.789 41.667 0.00 0.00 43.02 2.32
3506 4488 4.211374 GTGGCACTATAGCGATTTCGAATT 59.789 41.667 11.13 0.00 43.02 2.17
3508 4490 3.120792 GTGGCACTATAGCGATTTCGAA 58.879 45.455 11.13 0.00 43.02 3.71
3511 4493 5.122512 TCTAGTGGCACTATAGCGATTTC 57.877 43.478 26.39 0.00 34.64 2.17
3520 4502 4.103785 AGGCATTCAATCTAGTGGCACTAT 59.896 41.667 26.39 12.31 39.35 2.12
3563 4550 1.557832 CAGAGGGGTTTCGGGTTATGA 59.442 52.381 0.00 0.00 0.00 2.15
3602 4589 1.538687 GCTCACCATGCCCAAAGCTT 61.539 55.000 0.00 0.00 44.23 3.74
3614 4601 3.262660 AGTTGATGATCTTCAGCTCACCA 59.737 43.478 18.46 0.00 32.45 4.17
3630 4617 3.112075 CGCGTGCGTGGAGTTGAT 61.112 61.111 6.00 0.00 34.35 2.57
3742 4729 2.033141 TGAACTCAGGGCTGCTGC 59.967 61.111 7.10 7.10 38.76 5.25
3743 4730 4.298009 CTGAACTCAGGGCTGCTG 57.702 61.111 0.00 0.00 40.20 4.41
3821 4811 0.682209 CTGCTACATGGCAAGCCCTT 60.682 55.000 8.89 0.00 41.94 3.95
3822 4812 1.077212 CTGCTACATGGCAAGCCCT 60.077 57.895 8.89 0.00 41.94 5.19
3865 4855 9.654663 AGTTTATGGTTTAGCAAGTAGTCTTAG 57.345 33.333 0.00 0.00 32.07 2.18
3920 4910 4.801330 ATGGAGTACATGTTCTCGTTGA 57.199 40.909 21.75 9.50 38.70 3.18
3986 6428 5.180117 AGTCCAGATGTTGTTTTCTGAATCG 59.820 40.000 1.63 0.00 41.53 3.34
4055 6497 3.214328 GAGAACTGGAAACCAAAGCTCA 58.786 45.455 0.00 0.00 30.80 4.26
4095 6537 1.439529 CGAGTCGATGATCGCCGAG 60.440 63.158 10.45 0.00 40.21 4.63
4359 6801 1.372251 CGACGCAGCTTCAGACTGT 60.372 57.895 1.59 0.00 37.47 3.55
4436 6878 1.338105 CGGAGCTCCAACATGAGTTCA 60.338 52.381 31.67 0.00 42.44 3.18
4490 6932 0.868406 GACACAGAAGAACAAGCCCG 59.132 55.000 0.00 0.00 0.00 6.13
4559 7001 1.833630 AGATCAGATGGCCGTCAAGAA 59.166 47.619 26.70 9.17 0.00 2.52
4623 7065 1.546923 TCCATCGCTTACACGGAGAAA 59.453 47.619 0.00 0.00 0.00 2.52
4698 7140 1.402852 GGCGGAGAAACTGAAAATGCC 60.403 52.381 0.00 0.00 0.00 4.40
4719 7164 0.721718 CGACGAATCTTGGACTTGGC 59.278 55.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.