Multiple sequence alignment - TraesCS6D01G103300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G103300 chr6D 100.000 5329 0 0 1 5329 67370620 67375948 0.000000e+00 9841.0
1 TraesCS6D01G103300 chr6A 94.270 1117 60 2 3221 4334 84918119 84919234 0.000000e+00 1705.0
2 TraesCS6D01G103300 chr6A 89.134 1178 80 20 1929 3072 84916856 84918019 0.000000e+00 1423.0
3 TraesCS6D01G103300 chr6A 93.061 980 57 6 4350 5327 84920109 84921079 0.000000e+00 1423.0
4 TraesCS6D01G103300 chr6A 92.121 990 42 15 570 1542 84915695 84916665 0.000000e+00 1363.0
5 TraesCS6D01G103300 chr6A 87.463 335 36 5 320 654 84911875 84912203 1.080000e-101 381.0
6 TraesCS6D01G103300 chr6A 83.594 256 21 15 1 248 84911453 84911695 2.500000e-53 220.0
7 TraesCS6D01G103300 chr6A 85.638 188 18 4 648 828 84912788 84912973 7.050000e-44 189.0
8 TraesCS6D01G103300 chr6A 80.478 251 40 6 1 247 84914759 84915004 3.280000e-42 183.0
9 TraesCS6D01G103300 chr6A 95.588 68 3 0 1863 1930 84916684 84916751 5.640000e-20 110.0
10 TraesCS6D01G103300 chr6A 96.970 33 1 0 3166 3198 562943446 562943414 7.460000e-04 56.5
11 TraesCS6D01G103300 chr6B 94.429 1077 59 1 3221 4297 142226742 142227817 0.000000e+00 1655.0
12 TraesCS6D01G103300 chr6B 89.814 1129 46 33 451 1540 142223878 142224976 0.000000e+00 1384.0
13 TraesCS6D01G103300 chr6B 93.820 890 32 6 1733 2618 142225016 142225886 0.000000e+00 1317.0
14 TraesCS6D01G103300 chr6B 85.622 466 65 2 998 1462 40494598 40494134 6.200000e-134 488.0
15 TraesCS6D01G103300 chr6B 80.203 591 52 30 2615 3155 142226172 142226747 3.010000e-102 383.0
16 TraesCS6D01G103300 chr6B 85.397 315 44 2 999 1312 5242832 5243145 5.150000e-85 326.0
17 TraesCS6D01G103300 chr6B 85.397 315 44 2 999 1312 5264441 5264754 5.150000e-85 326.0
18 TraesCS6D01G103300 chr6B 85.833 120 17 0 1343 1462 5243402 5243521 1.560000e-25 128.0
19 TraesCS6D01G103300 chr6B 85.833 120 17 0 1343 1462 5269959 5270078 1.560000e-25 128.0
20 TraesCS6D01G103300 chr6B 86.325 117 15 1 1617 1732 408626272 408626156 5.600000e-25 126.0
21 TraesCS6D01G103300 chr6B 78.680 197 32 8 1628 1821 582441131 582440942 7.250000e-24 122.0
22 TraesCS6D01G103300 chr4D 86.481 466 60 3 998 1462 333616849 333617312 4.760000e-140 508.0
23 TraesCS6D01G103300 chr4D 86.052 466 61 4 998 1462 333693823 333694285 1.030000e-136 497.0
24 TraesCS6D01G103300 chr4D 97.727 88 2 0 1544 1631 123301073 123300986 9.240000e-33 152.0
25 TraesCS6D01G103300 chr4D 90.625 96 8 1 1733 1827 21147821 21147726 5.600000e-25 126.0
26 TraesCS6D01G103300 chr5B 86.133 375 50 2 1086 1459 563544881 563544508 2.310000e-108 403.0
27 TraesCS6D01G103300 chr5B 97.727 88 2 0 1544 1631 455637177 455637090 9.240000e-33 152.0
28 TraesCS6D01G103300 chr3D 85.542 249 35 1 4682 4930 573228261 573228014 5.290000e-65 259.0
29 TraesCS6D01G103300 chr3D 97.727 88 2 0 1544 1631 501932622 501932709 9.240000e-33 152.0
30 TraesCS6D01G103300 chrUn 97.727 88 2 0 1544 1631 275329079 275329166 9.240000e-33 152.0
31 TraesCS6D01G103300 chrUn 97.727 88 2 0 1544 1631 393315062 393315149 9.240000e-33 152.0
32 TraesCS6D01G103300 chrUn 97.727 88 2 0 1544 1631 454685136 454685223 9.240000e-33 152.0
33 TraesCS6D01G103300 chr7D 97.727 88 2 0 1544 1631 203516661 203516574 9.240000e-33 152.0
34 TraesCS6D01G103300 chr7D 79.104 134 23 4 1083 1211 613710864 613710997 2.640000e-13 87.9
35 TraesCS6D01G103300 chr1D 97.727 88 2 0 1544 1631 141311953 141312040 9.240000e-33 152.0
36 TraesCS6D01G103300 chr1D 97.727 88 2 0 1544 1631 298814799 298814886 9.240000e-33 152.0
37 TraesCS6D01G103300 chr1D 93.478 92 5 1 1733 1823 296367346 296367437 9.310000e-28 135.0
38 TraesCS6D01G103300 chr5D 90.566 106 10 0 1626 1731 53583240 53583135 2.000000e-29 141.0
39 TraesCS6D01G103300 chr5D 92.222 90 6 1 1733 1821 519343990 519344079 5.600000e-25 126.0
40 TraesCS6D01G103300 chr2D 90.000 110 9 2 1623 1731 296364215 296364107 2.000000e-29 141.0
41 TraesCS6D01G103300 chr2D 89.091 110 12 0 1622 1731 291991887 291991996 2.590000e-28 137.0
42 TraesCS6D01G103300 chr2B 89.381 113 10 2 1620 1731 366017510 366017621 2.000000e-29 141.0
43 TraesCS6D01G103300 chr2B 89.796 98 9 1 1733 1829 695721771 695721868 2.020000e-24 124.0
44 TraesCS6D01G103300 chr2A 90.000 110 9 2 1623 1731 367649327 367649219 2.000000e-29 141.0
45 TraesCS6D01G103300 chr2A 89.091 110 12 0 1622 1731 342647393 342647502 2.590000e-28 137.0
46 TraesCS6D01G103300 chr2A 91.111 45 4 0 3157 3201 171955811 171955767 1.600000e-05 62.1
47 TraesCS6D01G103300 chr2A 94.737 38 2 0 3154 3191 638322610 638322573 5.760000e-05 60.2
48 TraesCS6D01G103300 chr7B 88.596 114 12 1 1620 1732 672551707 672551820 2.590000e-28 137.0
49 TraesCS6D01G103300 chr7B 77.966 118 23 3 1097 1211 704790753 704790870 2.660000e-08 71.3
50 TraesCS6D01G103300 chr1A 93.333 90 5 1 1733 1821 535073885 535073974 1.200000e-26 132.0
51 TraesCS6D01G103300 chr1A 97.222 36 1 0 3166 3201 475313290 475313255 1.600000e-05 62.1
52 TraesCS6D01G103300 chr4B 92.222 90 6 1 1733 1821 28724215 28724304 5.600000e-25 126.0
53 TraesCS6D01G103300 chr1B 90.625 96 8 1 1733 1827 324356015 324356110 5.600000e-25 126.0
54 TraesCS6D01G103300 chr4A 86.111 72 5 5 3131 3201 709852728 709852795 7.400000e-09 73.1
55 TraesCS6D01G103300 chr4A 93.333 45 3 0 3157 3201 318044421 318044465 3.440000e-07 67.6
56 TraesCS6D01G103300 chr3A 95.238 42 2 0 3157 3198 159833586 159833545 3.440000e-07 67.6
57 TraesCS6D01G103300 chr3A 81.481 81 11 4 3154 3231 704356151 704356072 4.460000e-06 63.9
58 TraesCS6D01G103300 chr3A 90.698 43 4 0 3156 3198 738712707 738712665 2.070000e-04 58.4
59 TraesCS6D01G103300 chr7A 95.000 40 2 0 3157 3196 660540039 660540000 4.460000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G103300 chr6D 67370620 67375948 5328 False 9841.000000 9841 100.000000 1 5329 1 chr6D.!!$F1 5328
1 TraesCS6D01G103300 chr6A 84911453 84921079 9626 False 777.444444 1705 89.038556 1 5327 9 chr6A.!!$F1 5326
2 TraesCS6D01G103300 chr6B 142223878 142227817 3939 False 1184.750000 1655 89.566500 451 4297 4 chr6B.!!$F4 3846
3 TraesCS6D01G103300 chr6B 5242832 5243521 689 False 227.000000 326 85.615000 999 1462 2 chr6B.!!$F3 463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 4379 0.166597 CGTACTCGTCGTGCAAGGTA 59.833 55.000 0.00 0.0 0.0 3.08 F
1574 5561 0.042431 AGGCCTCTCTGTGACCTGAT 59.958 55.000 0.00 0.0 0.0 2.90 F
1621 5608 1.279025 TATCAGCGGGCCCCTTCTTT 61.279 55.000 18.66 0.0 0.0 2.52 F
1627 5614 1.543944 CGGGCCCCTTCTTTTGCAAT 61.544 55.000 18.66 0.0 0.0 3.56 F
1643 5630 2.037144 GCAATACTCCCTCCGTTCCTA 58.963 52.381 0.00 0.0 0.0 2.94 F
3030 7473 2.882137 CGACCAGGCCAAAGTAAAAGAA 59.118 45.455 5.01 0.0 0.0 2.52 F
3389 7856 1.664649 CAAGCAGAGGAACGCACGA 60.665 57.895 0.00 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 5609 0.539986 GGAACGGAGGGAGTATTGCA 59.460 55.000 0.00 0.00 0.00 4.08 R
3229 7696 0.321671 GACAACAGGCAGGCAGAGTA 59.678 55.000 0.00 0.00 0.00 2.59 R
3235 7702 0.322456 TACATGGACAACAGGCAGGC 60.322 55.000 0.00 0.00 33.23 4.85 R
3236 7703 1.271325 TGTACATGGACAACAGGCAGG 60.271 52.381 8.76 0.00 33.23 4.85 R
3269 7736 1.277842 ACCGCATGGATGTCTTGTACA 59.722 47.619 0.00 0.00 39.92 2.90 R
3859 8329 0.543749 CTTCAAGTAGGGGAGGCTGG 59.456 60.000 0.00 0.00 0.00 4.85 R
5129 10460 0.453782 CACTGTCGTGTCGCGTATCA 60.454 55.000 5.77 1.28 42.13 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 70 3.526825 CATGCATGCTGATGACACG 57.473 52.632 20.33 0.00 0.00 4.49
85 88 2.265182 GCCAAAGTTGCCGCCAGTA 61.265 57.895 0.00 0.00 0.00 2.74
92 95 0.320421 GTTGCCGCCAGTAGAGTTCA 60.320 55.000 0.00 0.00 0.00 3.18
93 96 0.394938 TTGCCGCCAGTAGAGTTCAA 59.605 50.000 0.00 0.00 0.00 2.69
95 98 0.741221 GCCGCCAGTAGAGTTCAAGG 60.741 60.000 0.00 0.00 0.00 3.61
97 100 0.741221 CGCCAGTAGAGTTCAAGGCC 60.741 60.000 0.00 0.00 38.90 5.19
98 101 0.615850 GCCAGTAGAGTTCAAGGCCT 59.384 55.000 0.00 0.00 36.17 5.19
99 102 1.406205 GCCAGTAGAGTTCAAGGCCTC 60.406 57.143 5.23 0.00 36.17 4.70
100 103 1.208293 CCAGTAGAGTTCAAGGCCTCC 59.792 57.143 5.23 0.00 0.00 4.30
101 104 1.208293 CAGTAGAGTTCAAGGCCTCCC 59.792 57.143 5.23 0.00 0.00 4.30
102 105 0.542333 GTAGAGTTCAAGGCCTCCCC 59.458 60.000 5.23 0.00 0.00 4.81
103 106 0.620700 TAGAGTTCAAGGCCTCCCCC 60.621 60.000 5.23 0.00 0.00 5.40
104 107 3.330720 AGTTCAAGGCCTCCCCCG 61.331 66.667 5.23 0.00 0.00 5.73
105 108 3.327404 GTTCAAGGCCTCCCCCGA 61.327 66.667 5.23 0.00 0.00 5.14
106 109 2.530661 TTCAAGGCCTCCCCCGAA 60.531 61.111 5.23 1.25 0.00 4.30
107 110 2.902457 TTCAAGGCCTCCCCCGAAC 61.902 63.158 5.23 0.00 0.00 3.95
108 111 3.646715 CAAGGCCTCCCCCGAACA 61.647 66.667 5.23 0.00 0.00 3.18
109 112 2.856988 AAGGCCTCCCCCGAACAA 60.857 61.111 5.23 0.00 0.00 2.83
110 113 2.238701 AAGGCCTCCCCCGAACAAT 61.239 57.895 5.23 0.00 0.00 2.71
111 114 0.917333 AAGGCCTCCCCCGAACAATA 60.917 55.000 5.23 0.00 0.00 1.90
112 115 0.917333 AGGCCTCCCCCGAACAATAA 60.917 55.000 0.00 0.00 0.00 1.40
113 116 0.465642 GGCCTCCCCCGAACAATAAG 60.466 60.000 0.00 0.00 0.00 1.73
145 148 3.579586 ACACATGCAATTGGGAAAGTCAT 59.420 39.130 7.72 0.00 0.00 3.06
155 158 3.099905 TGGGAAAGTCATCGATCTCTGT 58.900 45.455 0.00 0.00 0.00 3.41
157 160 3.868077 GGGAAAGTCATCGATCTCTGTTG 59.132 47.826 0.00 0.00 0.00 3.33
160 163 5.814705 GGAAAGTCATCGATCTCTGTTGAAT 59.185 40.000 0.00 0.00 0.00 2.57
162 165 7.492669 GGAAAGTCATCGATCTCTGTTGAATAA 59.507 37.037 0.00 0.00 0.00 1.40
164 167 5.974158 AGTCATCGATCTCTGTTGAATAACG 59.026 40.000 0.00 0.00 39.71 3.18
166 169 3.444916 TCGATCTCTGTTGAATAACGCC 58.555 45.455 0.00 0.00 39.71 5.68
181 184 2.325857 GCCAGCAATGTCGATCGC 59.674 61.111 11.09 6.41 0.00 4.58
192 195 1.338674 TGTCGATCGCAAAGGTTCCAT 60.339 47.619 11.09 0.00 0.00 3.41
194 197 1.086696 CGATCGCAAAGGTTCCATGT 58.913 50.000 0.26 0.00 0.00 3.21
197 200 1.522668 TCGCAAAGGTTCCATGTCTG 58.477 50.000 0.00 0.00 0.00 3.51
220 226 5.013495 TGGAAGAAGAAGATGTCAGGTTGAT 59.987 40.000 0.00 0.00 0.00 2.57
229 235 5.482908 AGATGTCAGGTTGATCACACTTAC 58.517 41.667 0.00 0.00 0.00 2.34
231 237 5.029807 TGTCAGGTTGATCACACTTACAA 57.970 39.130 9.31 0.00 0.00 2.41
232 238 4.814234 TGTCAGGTTGATCACACTTACAAC 59.186 41.667 9.31 0.00 40.90 3.32
235 241 3.806316 GTTGATCACACTTACAACCCG 57.194 47.619 0.00 0.00 37.30 5.28
236 242 1.803334 TGATCACACTTACAACCCGC 58.197 50.000 0.00 0.00 0.00 6.13
238 244 0.322187 ATCACACTTACAACCCGCCC 60.322 55.000 0.00 0.00 0.00 6.13
239 245 2.031465 ACACTTACAACCCGCCCG 59.969 61.111 0.00 0.00 0.00 6.13
240 246 2.344500 CACTTACAACCCGCCCGA 59.656 61.111 0.00 0.00 0.00 5.14
241 247 1.740296 CACTTACAACCCGCCCGAG 60.740 63.158 0.00 0.00 0.00 4.63
242 248 2.212110 ACTTACAACCCGCCCGAGT 61.212 57.895 0.00 0.00 0.00 4.18
243 249 1.447314 CTTACAACCCGCCCGAGTC 60.447 63.158 0.00 0.00 0.00 3.36
244 250 2.162338 CTTACAACCCGCCCGAGTCA 62.162 60.000 0.00 0.00 0.00 3.41
256 343 1.512926 CCGAGTCAACACAGGGAAAG 58.487 55.000 0.00 0.00 0.00 2.62
257 344 0.868406 CGAGTCAACACAGGGAAAGC 59.132 55.000 0.00 0.00 0.00 3.51
268 355 1.693606 CAGGGAAAGCCAACCATGTTT 59.306 47.619 0.00 0.00 33.97 2.83
277 364 4.526970 AGCCAACCATGTTTATTCGATCT 58.473 39.130 0.00 0.00 0.00 2.75
299 386 1.402968 GTTGCTCGATCCACAATGCAT 59.597 47.619 0.00 0.00 0.00 3.96
300 387 1.018910 TGCTCGATCCACAATGCATG 58.981 50.000 0.00 0.00 0.00 4.06
341 456 0.168128 GACACCATCGCCCGAAAAAG 59.832 55.000 0.00 0.00 0.00 2.27
342 457 0.250553 ACACCATCGCCCGAAAAAGA 60.251 50.000 0.00 0.00 0.00 2.52
343 458 0.168128 CACCATCGCCCGAAAAAGAC 59.832 55.000 0.00 0.00 0.00 3.01
344 459 1.296056 ACCATCGCCCGAAAAAGACG 61.296 55.000 0.00 0.00 0.00 4.18
346 461 0.793861 CATCGCCCGAAAAAGACGAA 59.206 50.000 0.00 0.00 36.22 3.85
347 462 1.076332 ATCGCCCGAAAAAGACGAAG 58.924 50.000 0.00 0.00 36.22 3.79
348 463 1.154469 CGCCCGAAAAAGACGAAGC 60.154 57.895 0.00 0.00 0.00 3.86
349 464 1.154469 GCCCGAAAAAGACGAAGCG 60.154 57.895 0.00 0.00 0.00 4.68
350 465 1.562575 GCCCGAAAAAGACGAAGCGA 61.563 55.000 0.00 0.00 0.00 4.93
351 466 1.076332 CCCGAAAAAGACGAAGCGAT 58.924 50.000 0.00 0.00 0.00 4.58
353 468 1.201921 CCGAAAAAGACGAAGCGATGG 60.202 52.381 0.00 0.00 0.00 3.51
354 469 1.724623 CGAAAAAGACGAAGCGATGGA 59.275 47.619 0.00 0.00 0.00 3.41
355 470 2.472397 CGAAAAAGACGAAGCGATGGAC 60.472 50.000 0.00 0.00 0.00 4.02
356 471 1.439679 AAAAGACGAAGCGATGGACC 58.560 50.000 0.00 0.00 0.00 4.46
367 482 1.442769 CGATGGACCACAAAGACCTG 58.557 55.000 0.00 0.00 0.00 4.00
377 492 1.271597 ACAAAGACCTGCCTCCACATC 60.272 52.381 0.00 0.00 0.00 3.06
378 493 0.329596 AAAGACCTGCCTCCACATCC 59.670 55.000 0.00 0.00 0.00 3.51
386 501 1.006805 CCTCCACATCCGATCTCGC 60.007 63.158 0.00 0.00 38.18 5.03
414 529 1.879380 CCCAAAACGTCTCATGAGCAA 59.121 47.619 18.36 0.00 0.00 3.91
415 530 2.350772 CCCAAAACGTCTCATGAGCAAC 60.351 50.000 18.36 10.91 0.00 4.17
436 551 1.137479 TGGAACCGTATAAGAAGCCGG 59.863 52.381 0.00 0.00 45.72 6.13
497 612 1.573829 GGCCAAAGCGACGAACATCA 61.574 55.000 0.00 0.00 41.24 3.07
518 633 5.930135 TCAAAAGAACTACTTGAAGCTCCT 58.070 37.500 0.00 0.00 38.98 3.69
578 693 4.821589 GCTTCTCCGCACTCCCCG 62.822 72.222 0.00 0.00 0.00 5.73
621 4311 2.446994 AAGGGTGACGGGGTGTGA 60.447 61.111 0.00 0.00 0.00 3.58
680 4379 0.166597 CGTACTCGTCGTGCAAGGTA 59.833 55.000 0.00 0.00 0.00 3.08
734 4445 2.531206 AGCTAGAATCGCGAAACAGAC 58.469 47.619 15.24 1.65 0.00 3.51
788 4499 0.237235 GAAGTCGTGCCAATGCGAAA 59.763 50.000 0.00 0.00 41.78 3.46
794 4505 0.447801 GTGCCAATGCGAAACGAGAT 59.552 50.000 0.00 0.00 41.78 2.75
821 4532 1.213182 AGATCAGAGACCGGTGAGCTA 59.787 52.381 14.63 0.00 37.66 3.32
838 4549 1.870167 GCTAGCCACGGCAGAAGATAC 60.870 57.143 11.35 0.00 44.88 2.24
839 4550 0.384309 TAGCCACGGCAGAAGATACG 59.616 55.000 11.35 0.00 44.88 3.06
840 4551 2.526120 GCCACGGCAGAAGATACGC 61.526 63.158 2.36 0.00 41.49 4.42
842 4553 0.739462 CCACGGCAGAAGATACGCAA 60.739 55.000 0.00 0.00 0.00 4.85
843 4554 1.290203 CACGGCAGAAGATACGCAAT 58.710 50.000 0.00 0.00 0.00 3.56
844 4555 1.665679 CACGGCAGAAGATACGCAATT 59.334 47.619 0.00 0.00 0.00 2.32
869 4588 3.643978 GGTCGCAGATGCCATCGC 61.644 66.667 10.24 10.24 40.67 4.58
876 4595 2.964925 GATGCCATCGCGCGGTTA 60.965 61.111 31.69 11.79 38.08 2.85
1044 4793 0.741927 TCATACTCTCCGTCGTCGCA 60.742 55.000 0.00 0.00 35.54 5.10
1462 5441 1.005097 TCAGGGAGCAAGAGGTACGTA 59.995 52.381 0.00 0.00 0.00 3.57
1463 5442 1.134560 CAGGGAGCAAGAGGTACGTAC 59.865 57.143 17.56 17.56 0.00 3.67
1464 5443 0.100146 GGGAGCAAGAGGTACGTACG 59.900 60.000 18.98 15.01 0.00 3.67
1465 5444 0.807496 GGAGCAAGAGGTACGTACGT 59.193 55.000 25.98 25.98 0.00 3.57
1542 5529 9.574516 AGCTACGAATTATTTCCTCCATTTTAT 57.425 29.630 0.00 0.00 0.00 1.40
1546 5533 9.574516 ACGAATTATTTCCTCCATTTTATAGCT 57.425 29.630 0.00 0.00 0.00 3.32
1552 5539 5.223449 TCCTCCATTTTATAGCTTACGGG 57.777 43.478 0.00 0.00 0.00 5.28
1553 5540 3.751698 CCTCCATTTTATAGCTTACGGGC 59.248 47.826 0.00 0.00 0.00 6.13
1556 5543 3.502211 CCATTTTATAGCTTACGGGCCAG 59.498 47.826 4.39 1.85 0.00 4.85
1557 5544 2.922740 TTTATAGCTTACGGGCCAGG 57.077 50.000 8.08 0.00 0.00 4.45
1558 5545 0.395312 TTATAGCTTACGGGCCAGGC 59.605 55.000 8.08 1.26 0.00 4.85
1568 5555 3.005539 GGCCAGGCCTCTCTGTGA 61.006 66.667 24.99 0.00 46.69 3.58
1569 5556 2.267324 GCCAGGCCTCTCTGTGAC 59.733 66.667 0.00 0.00 33.14 3.67
1570 5557 2.985456 CCAGGCCTCTCTGTGACC 59.015 66.667 0.00 0.00 33.14 4.02
1571 5558 1.611851 CCAGGCCTCTCTGTGACCT 60.612 63.158 0.00 0.00 33.14 3.85
1572 5559 1.595882 CAGGCCTCTCTGTGACCTG 59.404 63.158 0.00 0.00 41.78 4.00
1573 5560 1.466979 AGGCCTCTCTGTGACCTGA 59.533 57.895 0.00 0.00 0.00 3.86
1574 5561 0.042431 AGGCCTCTCTGTGACCTGAT 59.958 55.000 0.00 0.00 0.00 2.90
1575 5562 1.289231 AGGCCTCTCTGTGACCTGATA 59.711 52.381 0.00 0.00 0.00 2.15
1576 5563 2.111384 GGCCTCTCTGTGACCTGATAA 58.889 52.381 0.00 0.00 0.00 1.75
1577 5564 2.159028 GGCCTCTCTGTGACCTGATAAC 60.159 54.545 0.00 0.00 0.00 1.89
1578 5565 2.763448 GCCTCTCTGTGACCTGATAACT 59.237 50.000 0.00 0.00 0.00 2.24
1579 5566 3.954904 GCCTCTCTGTGACCTGATAACTA 59.045 47.826 0.00 0.00 0.00 2.24
1580 5567 4.037446 GCCTCTCTGTGACCTGATAACTAG 59.963 50.000 0.00 0.00 0.00 2.57
1581 5568 5.197451 CCTCTCTGTGACCTGATAACTAGT 58.803 45.833 0.00 0.00 0.00 2.57
1582 5569 6.358178 CCTCTCTGTGACCTGATAACTAGTA 58.642 44.000 0.00 0.00 0.00 1.82
1583 5570 7.001674 CCTCTCTGTGACCTGATAACTAGTAT 58.998 42.308 0.00 0.00 0.00 2.12
1584 5571 7.174253 CCTCTCTGTGACCTGATAACTAGTATC 59.826 44.444 0.00 0.83 39.38 2.24
1585 5572 6.706716 TCTCTGTGACCTGATAACTAGTATCG 59.293 42.308 0.00 0.00 41.51 2.92
1586 5573 5.238868 TCTGTGACCTGATAACTAGTATCGC 59.761 44.000 0.00 0.00 41.51 4.58
1587 5574 4.277672 TGTGACCTGATAACTAGTATCGCC 59.722 45.833 0.00 0.00 41.51 5.54
1588 5575 4.519730 GTGACCTGATAACTAGTATCGCCT 59.480 45.833 0.00 0.00 41.51 5.52
1589 5576 4.760715 TGACCTGATAACTAGTATCGCCTC 59.239 45.833 0.00 0.00 41.51 4.70
1590 5577 4.080687 ACCTGATAACTAGTATCGCCTCC 58.919 47.826 0.00 0.00 41.51 4.30
1591 5578 3.444388 CCTGATAACTAGTATCGCCTCCC 59.556 52.174 0.00 0.00 41.51 4.30
1592 5579 3.428532 TGATAACTAGTATCGCCTCCCC 58.571 50.000 0.00 0.00 41.51 4.81
1593 5580 1.901591 TAACTAGTATCGCCTCCCCG 58.098 55.000 0.00 0.00 0.00 5.73
1594 5581 1.461911 AACTAGTATCGCCTCCCCGC 61.462 60.000 0.00 0.00 0.00 6.13
1595 5582 2.599578 TAGTATCGCCTCCCCGCC 60.600 66.667 0.00 0.00 0.00 6.13
1603 5590 4.860881 CCTCCCCGCCCAGCTCTA 62.861 72.222 0.00 0.00 0.00 2.43
1604 5591 2.525381 CTCCCCGCCCAGCTCTAT 60.525 66.667 0.00 0.00 0.00 1.98
1605 5592 2.524394 TCCCCGCCCAGCTCTATC 60.524 66.667 0.00 0.00 0.00 2.08
1606 5593 2.844362 CCCCGCCCAGCTCTATCA 60.844 66.667 0.00 0.00 0.00 2.15
1607 5594 2.739784 CCCGCCCAGCTCTATCAG 59.260 66.667 0.00 0.00 0.00 2.90
1615 5602 4.321966 GCTCTATCAGCGGGCCCC 62.322 72.222 18.66 9.47 38.76 5.80
1616 5603 2.525381 CTCTATCAGCGGGCCCCT 60.525 66.667 18.66 12.02 0.00 4.79
1617 5604 2.040884 TCTATCAGCGGGCCCCTT 60.041 61.111 18.66 0.22 0.00 3.95
1618 5605 2.105806 CTCTATCAGCGGGCCCCTTC 62.106 65.000 18.66 5.61 0.00 3.46
1619 5606 2.040884 TATCAGCGGGCCCCTTCT 60.041 61.111 18.66 8.26 0.00 2.85
1620 5607 1.692749 TATCAGCGGGCCCCTTCTT 60.693 57.895 18.66 0.64 0.00 2.52
1621 5608 1.279025 TATCAGCGGGCCCCTTCTTT 61.279 55.000 18.66 0.00 0.00 2.52
1622 5609 2.155197 ATCAGCGGGCCCCTTCTTTT 62.155 55.000 18.66 0.00 0.00 2.27
1623 5610 2.283173 AGCGGGCCCCTTCTTTTG 60.283 61.111 18.66 0.00 0.00 2.44
1624 5611 4.069232 GCGGGCCCCTTCTTTTGC 62.069 66.667 18.66 7.33 0.00 3.68
1625 5612 2.600173 CGGGCCCCTTCTTTTGCA 60.600 61.111 18.66 0.00 0.00 4.08
1626 5613 2.206536 CGGGCCCCTTCTTTTGCAA 61.207 57.895 18.66 0.00 0.00 4.08
1627 5614 1.543944 CGGGCCCCTTCTTTTGCAAT 61.544 55.000 18.66 0.00 0.00 3.56
1632 5619 2.166459 GCCCCTTCTTTTGCAATACTCC 59.834 50.000 0.00 0.00 0.00 3.85
1633 5620 2.760650 CCCCTTCTTTTGCAATACTCCC 59.239 50.000 0.00 0.00 0.00 4.30
1643 5630 2.037144 GCAATACTCCCTCCGTTCCTA 58.963 52.381 0.00 0.00 0.00 2.94
1650 5637 8.591072 CAATACTCCCTCCGTTCCTAAATATAA 58.409 37.037 0.00 0.00 0.00 0.98
1651 5638 8.912614 ATACTCCCTCCGTTCCTAAATATAAT 57.087 34.615 0.00 0.00 0.00 1.28
1652 5639 7.628501 ACTCCCTCCGTTCCTAAATATAATT 57.371 36.000 0.00 0.00 0.00 1.40
1653 5640 7.677892 ACTCCCTCCGTTCCTAAATATAATTC 58.322 38.462 0.00 0.00 0.00 2.17
1654 5641 7.513091 ACTCCCTCCGTTCCTAAATATAATTCT 59.487 37.037 0.00 0.00 0.00 2.40
1655 5642 8.271398 TCCCTCCGTTCCTAAATATAATTCTT 57.729 34.615 0.00 0.00 0.00 2.52
1656 5643 8.720537 TCCCTCCGTTCCTAAATATAATTCTTT 58.279 33.333 0.00 0.00 0.00 2.52
1657 5644 9.350951 CCCTCCGTTCCTAAATATAATTCTTTT 57.649 33.333 0.00 0.00 0.00 2.27
1696 5683 5.948758 TGGACCACATACAAAGCAATATGAA 59.051 36.000 0.00 0.00 33.73 2.57
1774 5761 8.909708 ACGTCTATATAGATCTGTACGTAGTC 57.090 38.462 18.20 5.70 36.91 2.59
1816 5803 4.383173 ACGCTTATATTTAGAAACGGGGG 58.617 43.478 0.00 0.00 0.00 5.40
1824 5811 5.970501 ATTTAGAAACGGGGGAGTAGAAT 57.029 39.130 0.00 0.00 0.00 2.40
2051 6145 6.640907 GGTTTGACTTCTGAAAATAAACGCAT 59.359 34.615 12.65 0.00 0.00 4.73
2211 6307 6.485393 CCTTTTACCATGCAACAACAAAAAG 58.515 36.000 0.00 3.15 34.20 2.27
2273 6393 7.970614 GGTTCTCTTTGGTGCAAATAATCTTAG 59.029 37.037 0.00 0.00 32.70 2.18
2340 6460 9.696917 AGGTTATTTTCACATGAGAAAACATTC 57.303 29.630 26.49 18.09 46.63 2.67
2389 6509 6.873076 TGTTTTCATCAAGTTTGAGTTGCTTT 59.127 30.769 0.74 0.00 41.08 3.51
2423 6546 4.685628 CCACATGGTTATTTGCAAGTGTTC 59.314 41.667 4.47 0.00 0.00 3.18
2644 7058 6.543430 AATCATGGTGCTAGATAGGAGATC 57.457 41.667 0.00 0.00 0.00 2.75
2748 7162 5.352569 GTGCGACTACTAACTTAGTACTCCA 59.647 44.000 0.00 4.60 40.14 3.86
2921 7335 4.648762 TGTATTGGGGGTGCTGATAATTTG 59.351 41.667 0.00 0.00 0.00 2.32
2983 7425 9.606631 TTTTGAAAACAAAATATGCACTTACCT 57.393 25.926 0.00 0.00 0.00 3.08
3014 7456 4.829872 ATGAAGTGGGTATTAACGACCA 57.170 40.909 9.92 0.99 38.86 4.02
3030 7473 2.882137 CGACCAGGCCAAAGTAAAAGAA 59.118 45.455 5.01 0.00 0.00 2.52
3132 7599 5.762045 ACAATGCTGACTTTATGTGACAAC 58.238 37.500 0.00 0.00 0.00 3.32
3149 7616 4.019950 TGACAACTGACATCCATCACAGAT 60.020 41.667 0.00 0.00 34.88 2.90
3155 7622 6.810911 ACTGACATCCATCACAGATAACTAC 58.189 40.000 0.00 0.00 34.88 2.73
3158 7625 7.941919 TGACATCCATCACAGATAACTACTAC 58.058 38.462 0.00 0.00 0.00 2.73
3159 7626 7.780271 TGACATCCATCACAGATAACTACTACT 59.220 37.037 0.00 0.00 0.00 2.57
3165 7632 8.564574 CCATCACAGATAACTACTACTCTCTTC 58.435 40.741 0.00 0.00 0.00 2.87
3166 7633 7.773864 TCACAGATAACTACTACTCTCTTCG 57.226 40.000 0.00 0.00 0.00 3.79
3167 7634 7.329499 TCACAGATAACTACTACTCTCTTCGT 58.671 38.462 0.00 0.00 0.00 3.85
3168 7635 7.492020 TCACAGATAACTACTACTCTCTTCGTC 59.508 40.741 0.00 0.00 0.00 4.20
3169 7636 7.493320 CACAGATAACTACTACTCTCTTCGTCT 59.507 40.741 0.00 0.00 0.00 4.18
3170 7637 7.707893 ACAGATAACTACTACTCTCTTCGTCTC 59.292 40.741 0.00 0.00 0.00 3.36
3171 7638 7.707464 CAGATAACTACTACTCTCTTCGTCTCA 59.293 40.741 0.00 0.00 0.00 3.27
3172 7639 8.426489 AGATAACTACTACTCTCTTCGTCTCAT 58.574 37.037 0.00 0.00 0.00 2.90
3173 7640 9.695526 GATAACTACTACTCTCTTCGTCTCATA 57.304 37.037 0.00 0.00 0.00 2.15
3175 7642 8.967664 AACTACTACTCTCTTCGTCTCATAAT 57.032 34.615 0.00 0.00 0.00 1.28
3202 7669 6.237313 AGACGTTTTTACAAGCTAACATCC 57.763 37.500 0.00 0.00 0.00 3.51
3203 7670 5.995897 AGACGTTTTTACAAGCTAACATCCT 59.004 36.000 0.00 0.00 0.00 3.24
3204 7671 7.156673 AGACGTTTTTACAAGCTAACATCCTA 58.843 34.615 0.00 0.00 0.00 2.94
3205 7672 7.822822 AGACGTTTTTACAAGCTAACATCCTAT 59.177 33.333 0.00 0.00 0.00 2.57
3206 7673 9.090692 GACGTTTTTACAAGCTAACATCCTATA 57.909 33.333 0.00 0.00 0.00 1.31
3207 7674 9.609346 ACGTTTTTACAAGCTAACATCCTATAT 57.391 29.630 0.00 0.00 0.00 0.86
3213 7680 9.764363 TTACAAGCTAACATCCTATATTGTGAG 57.236 33.333 0.00 0.00 32.38 3.51
3214 7681 8.023021 ACAAGCTAACATCCTATATTGTGAGA 57.977 34.615 0.00 0.00 0.00 3.27
3215 7682 7.928706 ACAAGCTAACATCCTATATTGTGAGAC 59.071 37.037 0.00 0.00 0.00 3.36
3216 7683 6.682746 AGCTAACATCCTATATTGTGAGACG 58.317 40.000 0.00 0.00 0.00 4.18
3217 7684 5.864474 GCTAACATCCTATATTGTGAGACGG 59.136 44.000 0.00 0.00 0.00 4.79
3218 7685 6.294564 GCTAACATCCTATATTGTGAGACGGA 60.295 42.308 0.00 0.00 0.00 4.69
3219 7686 5.713792 ACATCCTATATTGTGAGACGGAG 57.286 43.478 0.00 0.00 0.00 4.63
3220 7687 4.524714 ACATCCTATATTGTGAGACGGAGG 59.475 45.833 0.00 0.00 0.00 4.30
3221 7688 4.448720 TCCTATATTGTGAGACGGAGGA 57.551 45.455 0.00 0.00 0.00 3.71
3222 7689 4.800023 TCCTATATTGTGAGACGGAGGAA 58.200 43.478 0.00 0.00 0.00 3.36
3223 7690 4.827835 TCCTATATTGTGAGACGGAGGAAG 59.172 45.833 0.00 0.00 0.00 3.46
3224 7691 4.585162 CCTATATTGTGAGACGGAGGAAGT 59.415 45.833 0.00 0.00 0.00 3.01
3225 7692 5.768662 CCTATATTGTGAGACGGAGGAAGTA 59.231 44.000 0.00 0.00 0.00 2.24
3226 7693 6.264744 CCTATATTGTGAGACGGAGGAAGTAA 59.735 42.308 0.00 0.00 0.00 2.24
3227 7694 6.732896 ATATTGTGAGACGGAGGAAGTAAT 57.267 37.500 0.00 0.00 0.00 1.89
3228 7695 7.834881 ATATTGTGAGACGGAGGAAGTAATA 57.165 36.000 0.00 0.00 0.00 0.98
3229 7696 6.732896 ATTGTGAGACGGAGGAAGTAATAT 57.267 37.500 0.00 0.00 0.00 1.28
3230 7697 7.834881 ATTGTGAGACGGAGGAAGTAATATA 57.165 36.000 0.00 0.00 0.00 0.86
3231 7698 6.630444 TGTGAGACGGAGGAAGTAATATAC 57.370 41.667 0.00 0.00 0.00 1.47
3232 7699 6.363065 TGTGAGACGGAGGAAGTAATATACT 58.637 40.000 0.00 0.00 41.73 2.12
3233 7700 6.485984 TGTGAGACGGAGGAAGTAATATACTC 59.514 42.308 0.00 0.00 38.26 2.59
3234 7701 6.711645 GTGAGACGGAGGAAGTAATATACTCT 59.288 42.308 0.00 0.00 38.26 3.24
3235 7702 6.711194 TGAGACGGAGGAAGTAATATACTCTG 59.289 42.308 0.00 0.00 38.26 3.35
3236 7703 5.474189 AGACGGAGGAAGTAATATACTCTGC 59.526 44.000 0.00 0.00 38.26 4.26
3269 7736 4.040047 TCCATGTACAGGTGAGGAATCAT 58.960 43.478 6.79 0.00 0.00 2.45
3286 7753 5.278169 GGAATCATGTACAAGACATCCATGC 60.278 44.000 21.23 0.00 46.33 4.06
3293 7760 3.272334 GACATCCATGCGGTCGGC 61.272 66.667 0.00 0.00 43.96 5.54
3389 7856 1.664649 CAAGCAGAGGAACGCACGA 60.665 57.895 0.00 0.00 0.00 4.35
3425 7892 4.003788 AAGACCGGGGTCACGCTG 62.004 66.667 19.38 0.00 46.76 5.18
3554 8021 1.742768 CCTGGACGAGGCCATAGAC 59.257 63.158 5.01 0.00 37.30 2.59
3564 8031 1.757699 AGGCCATAGACGAGAGGAAAC 59.242 52.381 5.01 0.00 0.00 2.78
3719 8189 2.047655 GACATGTTCGTGGCCGGA 60.048 61.111 5.05 0.00 33.95 5.14
3859 8329 2.087095 GAGCACGACATCGATGCAGC 62.087 60.000 25.11 21.18 43.48 5.25
3873 8343 2.366167 CAGCCAGCCTCCCCTACT 60.366 66.667 0.00 0.00 0.00 2.57
3972 8442 4.430765 AGCTCGGCGGTTACGTGG 62.431 66.667 7.21 0.00 43.45 4.94
4094 8564 1.390463 GACAGCTCCGTCGATTTCAAC 59.610 52.381 0.00 0.00 0.00 3.18
4319 8789 3.367743 CCGTTCGTCCCCGAGTCA 61.368 66.667 0.00 0.00 45.24 3.41
4327 8797 2.738521 CCCCGAGTCAGCGTGTTG 60.739 66.667 0.00 0.00 0.00 3.33
4330 8800 1.354337 CCCGAGTCAGCGTGTTGATG 61.354 60.000 0.00 0.00 34.51 3.07
4334 8804 1.656095 GAGTCAGCGTGTTGATGTAGC 59.344 52.381 0.00 0.00 34.90 3.58
4336 8806 1.126846 GTCAGCGTGTTGATGTAGCAC 59.873 52.381 0.00 0.00 37.18 4.40
4337 8807 1.147473 CAGCGTGTTGATGTAGCACA 58.853 50.000 0.00 0.00 40.16 4.57
4345 8899 5.579119 CGTGTTGATGTAGCACATAGGTAAA 59.421 40.000 2.37 0.00 39.27 2.01
4412 9742 7.038302 TCCTCTATGTTCCTGATTTTACTGTGT 60.038 37.037 0.00 0.00 0.00 3.72
4413 9743 8.258007 CCTCTATGTTCCTGATTTTACTGTGTA 58.742 37.037 0.00 0.00 0.00 2.90
4414 9744 8.997621 TCTATGTTCCTGATTTTACTGTGTAC 57.002 34.615 0.00 0.00 0.00 2.90
4415 9745 8.590204 TCTATGTTCCTGATTTTACTGTGTACA 58.410 33.333 0.00 0.00 0.00 2.90
4416 9746 9.214957 CTATGTTCCTGATTTTACTGTGTACAA 57.785 33.333 0.00 0.00 0.00 2.41
4417 9747 7.867305 TGTTCCTGATTTTACTGTGTACAAA 57.133 32.000 0.00 0.00 0.00 2.83
4421 9751 8.263940 TCCTGATTTTACTGTGTACAAATAGC 57.736 34.615 0.00 0.00 0.00 2.97
4433 9763 9.920826 CTGTGTACAAATAGCACATATTGTAAG 57.079 33.333 0.00 0.00 41.49 2.34
4437 9767 7.264373 ACAAATAGCACATATTGTAAGCTCC 57.736 36.000 0.00 0.00 32.76 4.70
4443 9773 5.590259 AGCACATATTGTAAGCTCCGAATTT 59.410 36.000 0.00 0.00 24.85 1.82
4467 9797 4.867047 CAGCAGTCATAGTACAGGTTTCAG 59.133 45.833 0.00 0.00 0.00 3.02
4469 9799 5.715279 AGCAGTCATAGTACAGGTTTCAGTA 59.285 40.000 0.00 0.00 0.00 2.74
4475 9805 8.517878 GTCATAGTACAGGTTTCAGTAGTTGTA 58.482 37.037 0.00 0.00 0.00 2.41
4479 9809 5.211174 ACAGGTTTCAGTAGTTGTAGTCC 57.789 43.478 0.00 0.00 0.00 3.85
4499 9830 5.701290 AGTCCTTTTTACAGTGCACAGATAC 59.299 40.000 21.04 7.39 0.00 2.24
4500 9831 5.701290 GTCCTTTTTACAGTGCACAGATACT 59.299 40.000 21.04 0.00 0.00 2.12
4501 9832 6.872020 GTCCTTTTTACAGTGCACAGATACTA 59.128 38.462 21.04 0.00 0.00 1.82
4504 9835 7.360101 CCTTTTTACAGTGCACAGATACTACAC 60.360 40.741 21.04 0.00 0.00 2.90
4545 9876 9.975218 AGGTTTAATATTCAGACCAACTACAAT 57.025 29.630 13.94 0.00 32.81 2.71
4622 9953 9.542462 TTTACAGTAGCCTCATGATGTATTTAC 57.458 33.333 0.00 0.00 0.00 2.01
4666 9997 5.853936 ACAGTATTGACTCTAGTGTTGCAA 58.146 37.500 0.00 0.00 31.73 4.08
4688 10019 4.756084 AGAGCAAGAAACTTTCAATCCG 57.244 40.909 4.34 0.00 0.00 4.18
4734 10065 7.478044 CAGTTTGTTTACATGTTTTGCTTTGTG 59.522 33.333 2.30 0.00 0.00 3.33
4751 10082 4.418013 TTGTGCTGATGGTGAATTTACG 57.582 40.909 0.00 0.00 0.00 3.18
4779 10110 5.994054 GCCTGATGATGAATTTAGAGCACTA 59.006 40.000 0.00 0.00 0.00 2.74
4821 10152 3.221771 TGCTGAATGCTTGTGTTTAGGT 58.778 40.909 0.00 0.00 43.37 3.08
4889 10220 0.834612 ACTCGGGTGTTTCTTCCACA 59.165 50.000 0.00 0.00 34.46 4.17
4890 10221 1.210967 ACTCGGGTGTTTCTTCCACAA 59.789 47.619 0.00 0.00 34.46 3.33
4891 10222 1.873591 CTCGGGTGTTTCTTCCACAAG 59.126 52.381 0.00 0.00 34.46 3.16
4896 10227 3.194755 GGGTGTTTCTTCCACAAGTGTTT 59.805 43.478 0.00 0.00 34.46 2.83
4920 10251 8.888579 TTTAAAGAACAACAAACCTTCAAACA 57.111 26.923 0.00 0.00 0.00 2.83
4963 10294 5.648092 ACATTTACCTGGACTTATTCTGTGC 59.352 40.000 0.00 0.00 0.00 4.57
5000 10331 4.647291 ATTTGTTAAGAACGTGAGAGCG 57.353 40.909 0.00 0.00 37.94 5.03
5037 10368 2.821366 CCGCTGCTCCACCATGAC 60.821 66.667 0.00 0.00 0.00 3.06
5076 10407 1.473434 CGAGGTAATGAAGGAGGCACC 60.473 57.143 0.00 0.00 39.35 5.01
5129 10460 2.753452 CTCCTTCATGAACTTGCAGCAT 59.247 45.455 3.38 0.00 0.00 3.79
5137 10468 0.374758 AACTTGCAGCATGATACGCG 59.625 50.000 14.99 3.53 39.69 6.01
5164 10495 2.202557 TGACGCCGACGCATACTG 60.203 61.111 0.00 0.00 45.53 2.74
5173 10504 0.721718 GACGCATACTGGCTGTTCAC 59.278 55.000 1.31 0.00 0.00 3.18
5205 10536 9.974980 TTTCTATTTGGAAAACTTCGCTAAATT 57.025 25.926 0.00 0.00 33.04 1.82
5206 10537 8.964420 TCTATTTGGAAAACTTCGCTAAATTG 57.036 30.769 0.00 0.00 0.00 2.32
5313 10644 7.496920 TGCATGAATTTAAACATGTCCACAAAA 59.503 29.630 16.05 0.00 43.67 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.713762 AGATTCTCAGAGGACTAGATTGTG 57.286 41.667 0.00 0.00 0.00 3.33
22 24 5.304871 CAGGATGAGAGATGGAAGATTCTCA 59.695 44.000 5.61 5.61 46.98 3.27
82 85 1.574263 GGGAGGCCTTGAACTCTACT 58.426 55.000 6.77 0.00 34.22 2.57
85 88 1.925972 GGGGGAGGCCTTGAACTCT 60.926 63.158 6.77 0.00 34.22 3.24
92 95 0.917333 TATTGTTCGGGGGAGGCCTT 60.917 55.000 6.77 0.00 0.00 4.35
93 96 0.917333 TTATTGTTCGGGGGAGGCCT 60.917 55.000 3.86 3.86 0.00 5.19
95 98 0.255033 ACTTATTGTTCGGGGGAGGC 59.745 55.000 0.00 0.00 0.00 4.70
97 100 4.482952 ACTAACTTATTGTTCGGGGGAG 57.517 45.455 0.00 0.00 39.89 4.30
98 101 5.070847 GGATACTAACTTATTGTTCGGGGGA 59.929 44.000 0.00 0.00 39.89 4.81
99 102 5.163280 TGGATACTAACTTATTGTTCGGGGG 60.163 44.000 0.00 0.00 39.89 5.40
100 103 5.756833 GTGGATACTAACTTATTGTTCGGGG 59.243 44.000 0.00 0.00 39.89 5.73
101 104 6.257193 GTGTGGATACTAACTTATTGTTCGGG 59.743 42.308 0.00 0.00 39.89 5.14
102 105 6.814644 TGTGTGGATACTAACTTATTGTTCGG 59.185 38.462 0.00 0.00 39.89 4.30
103 106 7.821595 TGTGTGGATACTAACTTATTGTTCG 57.178 36.000 0.00 0.00 39.89 3.95
104 107 8.122952 GCATGTGTGGATACTAACTTATTGTTC 58.877 37.037 0.00 0.00 39.89 3.18
105 108 7.609918 TGCATGTGTGGATACTAACTTATTGTT 59.390 33.333 0.00 0.00 42.31 2.83
106 109 7.109501 TGCATGTGTGGATACTAACTTATTGT 58.890 34.615 0.00 0.00 37.61 2.71
107 110 7.552458 TGCATGTGTGGATACTAACTTATTG 57.448 36.000 0.00 0.00 37.61 1.90
108 111 8.752005 ATTGCATGTGTGGATACTAACTTATT 57.248 30.769 0.00 0.00 37.61 1.40
109 112 8.623903 CAATTGCATGTGTGGATACTAACTTAT 58.376 33.333 0.00 0.00 37.61 1.73
110 113 7.066887 CCAATTGCATGTGTGGATACTAACTTA 59.933 37.037 0.00 0.00 32.54 2.24
111 114 6.127647 CCAATTGCATGTGTGGATACTAACTT 60.128 38.462 0.00 0.00 32.54 2.66
112 115 5.357878 CCAATTGCATGTGTGGATACTAACT 59.642 40.000 0.00 0.00 32.54 2.24
113 116 5.450412 CCCAATTGCATGTGTGGATACTAAC 60.450 44.000 0.00 0.00 32.54 2.34
145 148 3.119280 TGGCGTTATTCAACAGAGATCGA 60.119 43.478 0.00 0.00 34.05 3.59
155 158 3.485947 GACATTGCTGGCGTTATTCAA 57.514 42.857 0.00 0.00 0.00 2.69
164 167 1.980951 TTGCGATCGACATTGCTGGC 61.981 55.000 21.57 0.00 39.90 4.85
166 169 1.530441 CCTTTGCGATCGACATTGCTG 60.530 52.381 21.57 5.36 39.90 4.41
192 195 4.020751 CCTGACATCTTCTTCTTCCAGACA 60.021 45.833 0.00 0.00 0.00 3.41
194 197 4.163427 ACCTGACATCTTCTTCTTCCAGA 58.837 43.478 0.00 0.00 0.00 3.86
197 200 4.899502 TCAACCTGACATCTTCTTCTTCC 58.100 43.478 0.00 0.00 0.00 3.46
220 226 1.071814 GGGCGGGTTGTAAGTGTGA 59.928 57.895 0.00 0.00 0.00 3.58
229 235 3.047877 GTTGACTCGGGCGGGTTG 61.048 66.667 0.00 0.00 0.00 3.77
231 237 4.309950 GTGTTGACTCGGGCGGGT 62.310 66.667 0.00 0.00 0.00 5.28
232 238 4.308458 TGTGTTGACTCGGGCGGG 62.308 66.667 0.00 0.00 0.00 6.13
235 241 2.358737 CCCTGTGTTGACTCGGGC 60.359 66.667 5.70 0.00 35.20 6.13
236 242 0.107831 TTTCCCTGTGTTGACTCGGG 59.892 55.000 4.45 4.45 36.05 5.14
238 244 0.868406 GCTTTCCCTGTGTTGACTCG 59.132 55.000 0.00 0.00 0.00 4.18
239 245 1.239347 GGCTTTCCCTGTGTTGACTC 58.761 55.000 0.00 0.00 0.00 3.36
240 246 0.550914 TGGCTTTCCCTGTGTTGACT 59.449 50.000 0.00 0.00 0.00 3.41
241 247 1.067060 GTTGGCTTTCCCTGTGTTGAC 59.933 52.381 0.00 0.00 0.00 3.18
242 248 1.398692 GTTGGCTTTCCCTGTGTTGA 58.601 50.000 0.00 0.00 0.00 3.18
243 249 0.389025 GGTTGGCTTTCCCTGTGTTG 59.611 55.000 0.00 0.00 0.00 3.33
244 250 0.032615 TGGTTGGCTTTCCCTGTGTT 60.033 50.000 0.00 0.00 0.00 3.32
256 343 4.900635 AGATCGAATAAACATGGTTGGC 57.099 40.909 6.16 0.00 0.00 4.52
257 344 7.409697 CAACTAGATCGAATAAACATGGTTGG 58.590 38.462 6.16 0.00 0.00 3.77
277 364 2.279741 GCATTGTGGATCGAGCAACTA 58.720 47.619 10.01 1.69 0.00 2.24
325 440 1.296056 CGTCTTTTTCGGGCGATGGT 61.296 55.000 0.00 0.00 0.00 3.55
333 448 1.201921 CCATCGCTTCGTCTTTTTCGG 60.202 52.381 0.00 0.00 0.00 4.30
334 449 1.724623 TCCATCGCTTCGTCTTTTTCG 59.275 47.619 0.00 0.00 0.00 3.46
341 456 0.669318 TTGTGGTCCATCGCTTCGTC 60.669 55.000 0.00 0.00 0.00 4.20
342 457 0.250124 TTTGTGGTCCATCGCTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
343 458 0.443869 CTTTGTGGTCCATCGCTTCG 59.556 55.000 0.00 0.00 0.00 3.79
344 459 1.464997 GTCTTTGTGGTCCATCGCTTC 59.535 52.381 0.00 0.00 0.00 3.86
346 461 0.321653 GGTCTTTGTGGTCCATCGCT 60.322 55.000 0.00 0.00 0.00 4.93
347 462 0.321653 AGGTCTTTGTGGTCCATCGC 60.322 55.000 0.00 0.00 0.00 4.58
348 463 1.442769 CAGGTCTTTGTGGTCCATCG 58.557 55.000 0.00 0.00 0.00 3.84
349 464 1.168714 GCAGGTCTTTGTGGTCCATC 58.831 55.000 0.00 0.00 0.00 3.51
350 465 0.251341 GGCAGGTCTTTGTGGTCCAT 60.251 55.000 0.00 0.00 0.00 3.41
351 466 1.150536 GGCAGGTCTTTGTGGTCCA 59.849 57.895 0.00 0.00 0.00 4.02
353 468 0.606673 GGAGGCAGGTCTTTGTGGTC 60.607 60.000 0.00 0.00 0.00 4.02
354 469 1.352622 TGGAGGCAGGTCTTTGTGGT 61.353 55.000 0.00 0.00 0.00 4.16
355 470 0.890996 GTGGAGGCAGGTCTTTGTGG 60.891 60.000 0.00 0.00 0.00 4.17
356 471 0.179020 TGTGGAGGCAGGTCTTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
367 482 1.006805 CGAGATCGGATGTGGAGGC 60.007 63.158 0.00 0.00 35.37 4.70
386 501 0.249741 AGACGTTTTGGGTCTCGTGG 60.250 55.000 0.00 0.00 40.63 4.94
397 512 2.549754 CCAGTTGCTCATGAGACGTTTT 59.450 45.455 27.04 3.16 0.00 2.43
398 513 2.146342 CCAGTTGCTCATGAGACGTTT 58.854 47.619 27.04 4.24 0.00 3.60
414 529 2.159142 CGGCTTCTTATACGGTTCCAGT 60.159 50.000 0.00 0.00 0.00 4.00
415 530 2.470821 CGGCTTCTTATACGGTTCCAG 58.529 52.381 0.00 0.00 0.00 3.86
443 558 3.058224 GTGACGGGGATGCTTAATAATGC 60.058 47.826 0.00 0.00 0.00 3.56
471 586 4.715523 TCGCTTTGGCCCTTCCGG 62.716 66.667 0.00 0.00 37.80 5.14
497 612 7.304497 TCTAGGAGCTTCAAGTAGTTCTTTT 57.696 36.000 0.00 0.00 33.63 2.27
518 633 5.514310 GGGAGCTGTAGTTTTTCCCTTTCTA 60.514 44.000 0.00 0.00 43.39 2.10
621 4311 2.178984 CTCCCAGGAGATCTAGGGTTCT 59.821 54.545 20.89 1.30 44.53 3.01
659 4349 2.429571 TTGCACGACGAGTACGCC 60.430 61.111 0.00 0.00 43.96 5.68
680 4379 6.855763 TCAAGCAAGGTCCATTTGATTAAT 57.144 33.333 0.00 0.00 32.89 1.40
734 4445 5.258622 GCTAATATTGACTTTCTGTGTGCG 58.741 41.667 0.00 0.00 0.00 5.34
788 4499 4.335315 GTCTCTGATCTCAAGTGATCTCGT 59.665 45.833 11.88 0.00 42.30 4.18
794 4505 2.095461 CCGGTCTCTGATCTCAAGTGA 58.905 52.381 0.00 0.00 0.00 3.41
821 4532 1.141881 CGTATCTTCTGCCGTGGCT 59.858 57.895 12.84 0.00 42.51 4.75
838 4549 1.501741 CGACCAAGGTGGAATTGCG 59.498 57.895 0.18 0.00 40.96 4.85
839 4550 1.212751 GCGACCAAGGTGGAATTGC 59.787 57.895 5.37 0.00 40.96 3.56
840 4551 0.523072 CTGCGACCAAGGTGGAATTG 59.477 55.000 5.37 0.00 40.96 2.32
842 4553 0.620556 ATCTGCGACCAAGGTGGAAT 59.379 50.000 5.37 0.00 40.96 3.01
843 4554 0.321564 CATCTGCGACCAAGGTGGAA 60.322 55.000 5.37 0.00 40.96 3.53
844 4555 1.296392 CATCTGCGACCAAGGTGGA 59.704 57.895 5.37 0.00 40.96 4.02
876 4595 2.033801 GTGTATCCGGCCGCGTATATAT 59.966 50.000 22.85 6.21 0.00 0.86
1044 4793 2.851102 ACCTGGAGCAGCACCACT 60.851 61.111 7.60 0.00 33.57 4.00
1227 4976 2.733593 GACGACACCACCACGAGC 60.734 66.667 0.00 0.00 0.00 5.03
1366 5341 2.579201 GAGCTTGCGCCAGTAGGA 59.421 61.111 10.52 0.00 36.89 2.94
1462 5441 1.215647 GGTGAAGATCGGCTGACGT 59.784 57.895 1.46 0.00 44.69 4.34
1463 5442 0.389817 TTGGTGAAGATCGGCTGACG 60.390 55.000 0.00 0.00 46.11 4.35
1464 5443 1.808411 TTTGGTGAAGATCGGCTGAC 58.192 50.000 0.00 0.00 0.00 3.51
1465 5444 2.787473 ATTTGGTGAAGATCGGCTGA 57.213 45.000 0.00 0.00 0.00 4.26
1542 5529 3.476419 GGCCTGGCCCGTAAGCTA 61.476 66.667 27.77 0.00 44.06 3.32
1552 5539 2.267324 GTCACAGAGAGGCCTGGC 59.733 66.667 12.00 11.05 38.44 4.85
1553 5540 1.611851 AGGTCACAGAGAGGCCTGG 60.612 63.158 12.00 0.00 38.44 4.45
1556 5543 1.781786 TATCAGGTCACAGAGAGGCC 58.218 55.000 0.00 0.00 0.00 5.19
1557 5544 2.763448 AGTTATCAGGTCACAGAGAGGC 59.237 50.000 0.00 0.00 0.00 4.70
1558 5545 5.197451 ACTAGTTATCAGGTCACAGAGAGG 58.803 45.833 0.00 0.00 0.00 3.69
1559 5546 7.095397 CGATACTAGTTATCAGGTCACAGAGAG 60.095 44.444 0.00 0.00 37.06 3.20
1560 5547 6.706716 CGATACTAGTTATCAGGTCACAGAGA 59.293 42.308 0.00 0.00 37.06 3.10
1561 5548 6.566942 GCGATACTAGTTATCAGGTCACAGAG 60.567 46.154 0.00 0.00 37.06 3.35
1562 5549 5.238868 GCGATACTAGTTATCAGGTCACAGA 59.761 44.000 0.00 0.00 37.06 3.41
1563 5550 5.453648 GCGATACTAGTTATCAGGTCACAG 58.546 45.833 0.00 0.00 37.06 3.66
1564 5551 4.277672 GGCGATACTAGTTATCAGGTCACA 59.722 45.833 0.00 0.00 37.06 3.58
1565 5552 4.519730 AGGCGATACTAGTTATCAGGTCAC 59.480 45.833 0.00 0.00 37.06 3.67
1566 5553 4.726583 AGGCGATACTAGTTATCAGGTCA 58.273 43.478 0.00 0.00 37.06 4.02
1567 5554 4.156373 GGAGGCGATACTAGTTATCAGGTC 59.844 50.000 0.00 0.02 37.06 3.85
1568 5555 4.080687 GGAGGCGATACTAGTTATCAGGT 58.919 47.826 0.00 0.00 37.06 4.00
1569 5556 3.444388 GGGAGGCGATACTAGTTATCAGG 59.556 52.174 0.00 0.00 37.06 3.86
1570 5557 3.444388 GGGGAGGCGATACTAGTTATCAG 59.556 52.174 0.00 1.43 37.06 2.90
1571 5558 3.428532 GGGGAGGCGATACTAGTTATCA 58.571 50.000 0.00 0.00 37.06 2.15
1572 5559 2.422832 CGGGGAGGCGATACTAGTTATC 59.577 54.545 0.00 1.70 34.21 1.75
1573 5560 2.444421 CGGGGAGGCGATACTAGTTAT 58.556 52.381 0.00 0.00 0.00 1.89
1574 5561 1.901591 CGGGGAGGCGATACTAGTTA 58.098 55.000 0.00 0.00 0.00 2.24
1575 5562 1.461911 GCGGGGAGGCGATACTAGTT 61.462 60.000 0.00 0.00 0.00 2.24
1576 5563 1.902432 GCGGGGAGGCGATACTAGT 60.902 63.158 0.00 0.00 0.00 2.57
1577 5564 2.637383 GGCGGGGAGGCGATACTAG 61.637 68.421 0.00 0.00 35.04 2.57
1578 5565 2.599578 GGCGGGGAGGCGATACTA 60.600 66.667 0.00 0.00 35.04 1.82
1586 5573 4.860881 TAGAGCTGGGCGGGGAGG 62.861 72.222 0.00 0.00 0.00 4.30
1587 5574 2.525381 ATAGAGCTGGGCGGGGAG 60.525 66.667 0.00 0.00 0.00 4.30
1588 5575 2.524394 GATAGAGCTGGGCGGGGA 60.524 66.667 0.00 0.00 0.00 4.81
1589 5576 2.844362 TGATAGAGCTGGGCGGGG 60.844 66.667 0.00 0.00 0.00 5.73
1590 5577 2.739784 CTGATAGAGCTGGGCGGG 59.260 66.667 0.00 0.00 0.00 6.13
1591 5578 2.030262 GCTGATAGAGCTGGGCGG 59.970 66.667 0.00 0.00 45.21 6.13
1592 5579 2.355599 CGCTGATAGAGCTGGGCG 60.356 66.667 0.00 0.00 46.64 6.13
1593 5580 2.030262 CCGCTGATAGAGCTGGGC 59.970 66.667 0.00 0.00 46.64 5.36
1594 5581 2.739784 CCCGCTGATAGAGCTGGG 59.260 66.667 0.00 0.00 45.95 4.45
1596 5583 2.030262 GGCCCGCTGATAGAGCTG 59.970 66.667 0.00 0.00 46.64 4.24
1597 5584 3.237741 GGGCCCGCTGATAGAGCT 61.238 66.667 5.69 0.00 46.64 4.09
1598 5585 4.321966 GGGGCCCGCTGATAGAGC 62.322 72.222 17.79 0.00 45.20 4.09
1599 5586 2.105806 GAAGGGGCCCGCTGATAGAG 62.106 65.000 18.95 0.00 0.00 2.43
1600 5587 2.040884 AAGGGGCCCGCTGATAGA 60.041 61.111 18.95 0.00 0.00 1.98
1601 5588 1.700042 AAGAAGGGGCCCGCTGATAG 61.700 60.000 18.95 0.00 0.00 2.08
1602 5589 1.279025 AAAGAAGGGGCCCGCTGATA 61.279 55.000 18.95 0.00 0.00 2.15
1603 5590 2.155197 AAAAGAAGGGGCCCGCTGAT 62.155 55.000 18.95 8.89 0.00 2.90
1604 5591 2.840753 AAAAGAAGGGGCCCGCTGA 61.841 57.895 18.95 0.00 0.00 4.26
1605 5592 2.283173 AAAAGAAGGGGCCCGCTG 60.283 61.111 18.95 0.00 0.00 5.18
1606 5593 2.283173 CAAAAGAAGGGGCCCGCT 60.283 61.111 18.95 16.29 0.00 5.52
1607 5594 4.069232 GCAAAAGAAGGGGCCCGC 62.069 66.667 18.95 13.98 0.00 6.13
1608 5595 1.543944 ATTGCAAAAGAAGGGGCCCG 61.544 55.000 18.95 1.22 0.00 6.13
1609 5596 1.207089 GTATTGCAAAAGAAGGGGCCC 59.793 52.381 17.12 17.12 0.00 5.80
1610 5597 2.166459 GAGTATTGCAAAAGAAGGGGCC 59.834 50.000 1.71 0.00 0.00 5.80
1611 5598 2.166459 GGAGTATTGCAAAAGAAGGGGC 59.834 50.000 1.71 0.00 0.00 5.80
1612 5599 2.760650 GGGAGTATTGCAAAAGAAGGGG 59.239 50.000 1.71 0.00 0.00 4.79
1613 5600 3.696548 GAGGGAGTATTGCAAAAGAAGGG 59.303 47.826 1.71 0.00 0.00 3.95
1614 5601 3.696548 GGAGGGAGTATTGCAAAAGAAGG 59.303 47.826 1.71 0.00 0.00 3.46
1615 5602 3.375299 CGGAGGGAGTATTGCAAAAGAAG 59.625 47.826 1.71 0.00 0.00 2.85
1616 5603 3.244770 ACGGAGGGAGTATTGCAAAAGAA 60.245 43.478 1.71 0.00 0.00 2.52
1617 5604 2.304761 ACGGAGGGAGTATTGCAAAAGA 59.695 45.455 1.71 0.00 0.00 2.52
1618 5605 2.711542 ACGGAGGGAGTATTGCAAAAG 58.288 47.619 1.71 0.00 0.00 2.27
1619 5606 2.871096 ACGGAGGGAGTATTGCAAAA 57.129 45.000 1.71 0.00 0.00 2.44
1620 5607 2.617021 GGAACGGAGGGAGTATTGCAAA 60.617 50.000 1.71 0.00 0.00 3.68
1621 5608 1.065709 GGAACGGAGGGAGTATTGCAA 60.066 52.381 0.00 0.00 0.00 4.08
1622 5609 0.539986 GGAACGGAGGGAGTATTGCA 59.460 55.000 0.00 0.00 0.00 4.08
1623 5610 0.831307 AGGAACGGAGGGAGTATTGC 59.169 55.000 0.00 0.00 0.00 3.56
1624 5611 4.748277 TTTAGGAACGGAGGGAGTATTG 57.252 45.455 0.00 0.00 0.00 1.90
1625 5612 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
1626 5613 8.912614 ATTATATTTAGGAACGGAGGGAGTAT 57.087 34.615 0.00 0.00 0.00 2.12
1627 5614 8.731591 AATTATATTTAGGAACGGAGGGAGTA 57.268 34.615 0.00 0.00 0.00 2.59
1671 5658 5.356751 TCATATTGCTTTGTATGTGGTCCAC 59.643 40.000 15.64 15.64 34.56 4.02
1672 5659 5.504853 TCATATTGCTTTGTATGTGGTCCA 58.495 37.500 0.00 0.00 31.75 4.02
1673 5660 6.449635 TTCATATTGCTTTGTATGTGGTCC 57.550 37.500 0.00 0.00 31.75 4.46
1674 5661 7.706159 TCATTCATATTGCTTTGTATGTGGTC 58.294 34.615 0.00 0.00 31.75 4.02
1675 5662 7.643569 TCATTCATATTGCTTTGTATGTGGT 57.356 32.000 0.00 0.00 31.75 4.16
1676 5663 9.188588 GATTCATTCATATTGCTTTGTATGTGG 57.811 33.333 0.00 0.00 31.75 4.17
1677 5664 9.961265 AGATTCATTCATATTGCTTTGTATGTG 57.039 29.630 0.00 0.00 31.75 3.21
1682 5669 9.182214 AGTGTAGATTCATTCATATTGCTTTGT 57.818 29.630 0.00 0.00 0.00 2.83
1683 5670 9.661187 GAGTGTAGATTCATTCATATTGCTTTG 57.339 33.333 0.00 0.00 0.00 2.77
1684 5671 9.624373 AGAGTGTAGATTCATTCATATTGCTTT 57.376 29.630 0.00 0.00 0.00 3.51
1748 5735 9.995957 GACTACGTACAGATCTATATAGACGTA 57.004 37.037 21.37 21.37 34.72 3.57
1749 5736 7.973388 GGACTACGTACAGATCTATATAGACGT 59.027 40.741 21.41 21.41 34.72 4.34
1769 5756 8.858186 GTTTTTAGAGATTTCAGTACGGACTAC 58.142 37.037 0.00 0.00 33.32 2.73
1774 5761 5.347907 AGCGTTTTTAGAGATTTCAGTACGG 59.652 40.000 0.00 0.00 0.00 4.02
1805 5792 7.232127 CACTTATATTCTACTCCCCCGTTTCTA 59.768 40.741 0.00 0.00 0.00 2.10
2026 6120 5.974751 TGCGTTTATTTTCAGAAGTCAAACC 59.025 36.000 8.72 4.83 0.00 3.27
2051 6145 7.236847 CCCCTCAGTTCCATAATATAAGGTGTA 59.763 40.741 0.00 0.00 0.00 2.90
2067 6161 5.167303 AGATCAAAACTACCCCTCAGTTC 57.833 43.478 0.00 0.00 35.19 3.01
2151 6246 4.771903 TCCGTATTAGGTATGCAAAGCAA 58.228 39.130 0.00 0.00 43.62 3.91
2159 6254 6.426937 CCACAAAGGATTCCGTATTAGGTATG 59.573 42.308 0.00 0.00 41.22 2.39
2211 6307 6.016276 TGTCAACCTTCTCTTCTAAATTTGCC 60.016 38.462 0.00 0.00 0.00 4.52
2245 6365 1.757682 TTTGCACCAAAGAGAACCGT 58.242 45.000 0.00 0.00 0.00 4.83
2340 6460 3.436015 CACCTGCAAAGAGACTTCATCTG 59.564 47.826 0.00 0.00 38.00 2.90
2423 6546 6.092955 ACAATCCATGCAATATGGCTTAAG 57.907 37.500 3.19 0.00 39.01 1.85
2650 7064 0.679505 TGTCTGCTGAGGCGTTTACT 59.320 50.000 0.00 0.00 42.25 2.24
2652 7066 2.028112 AGATTGTCTGCTGAGGCGTTTA 60.028 45.455 0.00 0.00 42.25 2.01
2662 7076 1.473258 AGCTCGAGAGATTGTCTGCT 58.527 50.000 18.75 0.00 40.84 4.24
2748 7162 3.811083 TGGACTACATTGTGAAACGGTT 58.189 40.909 0.00 0.00 42.39 4.44
2999 7441 0.542805 GGCCTGGTCGTTAATACCCA 59.457 55.000 0.00 0.00 36.06 4.51
3001 7443 2.406596 TTGGCCTGGTCGTTAATACC 57.593 50.000 3.32 3.57 37.53 2.73
3005 7447 3.488778 TTACTTTGGCCTGGTCGTTAA 57.511 42.857 3.32 0.00 0.00 2.01
3014 7456 3.067601 CCACGTTTCTTTTACTTTGGCCT 59.932 43.478 3.32 0.00 0.00 5.19
3030 7473 5.465724 GTCACACTAGATCTTTTTCCACGTT 59.534 40.000 0.00 0.00 0.00 3.99
3105 7567 6.183360 TGTCACATAAAGTCAGCATTGTTTGT 60.183 34.615 0.00 0.00 0.00 2.83
3108 7570 6.039717 AGTTGTCACATAAAGTCAGCATTGTT 59.960 34.615 0.00 0.00 0.00 2.83
3111 7573 5.764686 TCAGTTGTCACATAAAGTCAGCATT 59.235 36.000 0.00 0.00 0.00 3.56
3112 7574 5.180117 GTCAGTTGTCACATAAAGTCAGCAT 59.820 40.000 0.00 0.00 0.00 3.79
3121 7583 5.643348 GTGATGGATGTCAGTTGTCACATAA 59.357 40.000 0.00 0.00 33.90 1.90
3122 7584 5.178061 GTGATGGATGTCAGTTGTCACATA 58.822 41.667 0.00 0.00 33.90 2.29
3123 7585 4.005650 GTGATGGATGTCAGTTGTCACAT 58.994 43.478 0.00 0.00 33.90 3.21
3132 7599 7.048629 AGTAGTTATCTGTGATGGATGTCAG 57.951 40.000 0.00 0.00 0.00 3.51
3176 7643 8.448615 GGATGTTAGCTTGTAAAAACGTCTTAT 58.551 33.333 13.86 0.00 37.77 1.73
3177 7644 7.658575 AGGATGTTAGCTTGTAAAAACGTCTTA 59.341 33.333 13.86 0.00 37.77 2.10
3178 7645 6.485648 AGGATGTTAGCTTGTAAAAACGTCTT 59.514 34.615 13.86 6.44 37.77 3.01
3179 7646 5.995897 AGGATGTTAGCTTGTAAAAACGTCT 59.004 36.000 13.86 2.05 37.77 4.18
3180 7647 6.237313 AGGATGTTAGCTTGTAAAAACGTC 57.763 37.500 8.03 8.03 37.21 4.34
3181 7648 7.916914 ATAGGATGTTAGCTTGTAAAAACGT 57.083 32.000 0.00 0.00 0.00 3.99
3187 7654 9.764363 CTCACAATATAGGATGTTAGCTTGTAA 57.236 33.333 0.00 0.00 0.00 2.41
3188 7655 9.143155 TCTCACAATATAGGATGTTAGCTTGTA 57.857 33.333 0.00 0.00 0.00 2.41
3189 7656 7.928706 GTCTCACAATATAGGATGTTAGCTTGT 59.071 37.037 0.00 0.00 0.00 3.16
3190 7657 7.115520 CGTCTCACAATATAGGATGTTAGCTTG 59.884 40.741 0.00 0.00 0.00 4.01
3191 7658 7.148641 CGTCTCACAATATAGGATGTTAGCTT 58.851 38.462 0.00 0.00 0.00 3.74
3192 7659 6.294787 CCGTCTCACAATATAGGATGTTAGCT 60.295 42.308 0.00 0.00 0.00 3.32
3193 7660 5.864474 CCGTCTCACAATATAGGATGTTAGC 59.136 44.000 0.00 0.00 0.00 3.09
3194 7661 7.215719 TCCGTCTCACAATATAGGATGTTAG 57.784 40.000 0.00 0.00 0.00 2.34
3195 7662 6.208797 CCTCCGTCTCACAATATAGGATGTTA 59.791 42.308 0.00 0.00 0.00 2.41
3196 7663 5.011125 CCTCCGTCTCACAATATAGGATGTT 59.989 44.000 0.00 0.00 0.00 2.71
3197 7664 4.524714 CCTCCGTCTCACAATATAGGATGT 59.475 45.833 0.00 0.00 0.00 3.06
3198 7665 4.767409 TCCTCCGTCTCACAATATAGGATG 59.233 45.833 0.00 0.00 0.00 3.51
3199 7666 4.999310 TCCTCCGTCTCACAATATAGGAT 58.001 43.478 0.00 0.00 0.00 3.24
3200 7667 4.448720 TCCTCCGTCTCACAATATAGGA 57.551 45.455 0.00 0.00 0.00 2.94
3201 7668 4.585162 ACTTCCTCCGTCTCACAATATAGG 59.415 45.833 0.00 0.00 0.00 2.57
3202 7669 5.776173 ACTTCCTCCGTCTCACAATATAG 57.224 43.478 0.00 0.00 0.00 1.31
3203 7670 7.834881 ATTACTTCCTCCGTCTCACAATATA 57.165 36.000 0.00 0.00 0.00 0.86
3204 7671 6.732896 ATTACTTCCTCCGTCTCACAATAT 57.267 37.500 0.00 0.00 0.00 1.28
3205 7672 7.834881 ATATTACTTCCTCCGTCTCACAATA 57.165 36.000 0.00 0.00 0.00 1.90
3206 7673 6.732896 ATATTACTTCCTCCGTCTCACAAT 57.267 37.500 0.00 0.00 0.00 2.71
3207 7674 6.832384 AGTATATTACTTCCTCCGTCTCACAA 59.168 38.462 0.00 0.00 34.86 3.33
3208 7675 6.363065 AGTATATTACTTCCTCCGTCTCACA 58.637 40.000 0.00 0.00 34.86 3.58
3209 7676 6.711645 AGAGTATATTACTTCCTCCGTCTCAC 59.288 42.308 0.00 0.00 39.59 3.51
3210 7677 6.711194 CAGAGTATATTACTTCCTCCGTCTCA 59.289 42.308 0.00 0.00 39.59 3.27
3211 7678 6.348704 GCAGAGTATATTACTTCCTCCGTCTC 60.349 46.154 0.00 0.00 39.59 3.36
3212 7679 5.474189 GCAGAGTATATTACTTCCTCCGTCT 59.526 44.000 0.00 0.00 39.59 4.18
3213 7680 5.335819 GGCAGAGTATATTACTTCCTCCGTC 60.336 48.000 0.00 0.00 39.59 4.79
3214 7681 4.523558 GGCAGAGTATATTACTTCCTCCGT 59.476 45.833 0.00 0.00 39.59 4.69
3215 7682 4.767928 AGGCAGAGTATATTACTTCCTCCG 59.232 45.833 0.00 0.00 39.59 4.63
3216 7683 5.567823 GCAGGCAGAGTATATTACTTCCTCC 60.568 48.000 0.00 0.00 39.59 4.30
3217 7684 5.474825 GCAGGCAGAGTATATTACTTCCTC 58.525 45.833 0.00 0.00 39.59 3.71
3218 7685 4.284746 GGCAGGCAGAGTATATTACTTCCT 59.715 45.833 0.00 0.00 39.59 3.36
3219 7686 4.284746 AGGCAGGCAGAGTATATTACTTCC 59.715 45.833 0.00 0.00 39.59 3.46
3220 7687 5.221541 ACAGGCAGGCAGAGTATATTACTTC 60.222 44.000 0.00 0.00 39.59 3.01
3221 7688 4.656112 ACAGGCAGGCAGAGTATATTACTT 59.344 41.667 0.00 0.00 39.59 2.24
3222 7689 4.227197 ACAGGCAGGCAGAGTATATTACT 58.773 43.478 0.00 0.00 42.86 2.24
3223 7690 4.608948 ACAGGCAGGCAGAGTATATTAC 57.391 45.455 0.00 0.00 0.00 1.89
3224 7691 4.408921 ACAACAGGCAGGCAGAGTATATTA 59.591 41.667 0.00 0.00 0.00 0.98
3225 7692 3.200825 ACAACAGGCAGGCAGAGTATATT 59.799 43.478 0.00 0.00 0.00 1.28
3226 7693 2.774234 ACAACAGGCAGGCAGAGTATAT 59.226 45.455 0.00 0.00 0.00 0.86
3227 7694 2.168521 GACAACAGGCAGGCAGAGTATA 59.831 50.000 0.00 0.00 0.00 1.47
3228 7695 0.987294 ACAACAGGCAGGCAGAGTAT 59.013 50.000 0.00 0.00 0.00 2.12
3229 7696 0.321671 GACAACAGGCAGGCAGAGTA 59.678 55.000 0.00 0.00 0.00 2.59
3230 7697 1.072159 GACAACAGGCAGGCAGAGT 59.928 57.895 0.00 0.00 0.00 3.24
3231 7698 1.673665 GGACAACAGGCAGGCAGAG 60.674 63.158 0.00 0.00 0.00 3.35
3232 7699 1.782201 ATGGACAACAGGCAGGCAGA 61.782 55.000 0.00 0.00 0.00 4.26
3233 7700 1.303888 ATGGACAACAGGCAGGCAG 60.304 57.895 0.00 0.00 0.00 4.85
3234 7701 1.604308 CATGGACAACAGGCAGGCA 60.604 57.895 0.00 0.00 0.00 4.75
3235 7702 0.322456 TACATGGACAACAGGCAGGC 60.322 55.000 0.00 0.00 33.23 4.85
3236 7703 1.271325 TGTACATGGACAACAGGCAGG 60.271 52.381 8.76 0.00 33.23 4.85
3269 7736 1.277842 ACCGCATGGATGTCTTGTACA 59.722 47.619 0.00 0.00 39.92 2.90
3389 7856 2.600769 ACCGCCGACAGGAACTCT 60.601 61.111 0.00 0.00 41.02 3.24
3547 8014 1.841450 GCGTTTCCTCTCGTCTATGG 58.159 55.000 0.00 0.00 0.00 2.74
3554 8021 2.874780 CGGACGCGTTTCCTCTCG 60.875 66.667 15.53 5.58 32.88 4.04
3604 8071 3.437795 GGTTCTCCTCGACGGCGA 61.438 66.667 15.22 15.22 45.71 5.54
3665 8135 1.671054 GCTGTTGGTGCTTAGGCGA 60.671 57.895 0.00 0.00 42.25 5.54
3671 8141 0.963962 CCTTGATGCTGTTGGTGCTT 59.036 50.000 0.00 0.00 0.00 3.91
3731 8201 2.202362 CAGTCCAGCGACGACGAG 60.202 66.667 12.29 2.22 44.28 4.18
3844 8314 1.520120 CTGGCTGCATCGATGTCGT 60.520 57.895 25.47 0.00 40.80 4.34
3859 8329 0.543749 CTTCAAGTAGGGGAGGCTGG 59.456 60.000 0.00 0.00 0.00 4.85
3873 8343 4.257267 TCTCTTTGATGACGAGCTTCAA 57.743 40.909 0.00 0.00 38.46 2.69
3965 8435 4.376176 CCCGCCGGAACCACGTAA 62.376 66.667 5.05 0.00 0.00 3.18
3993 8463 3.799755 GGCCCACGCATTCACGAC 61.800 66.667 0.00 0.00 36.38 4.34
4094 8564 0.802607 GAAACTCGTAGCTGCTCCCG 60.803 60.000 4.91 10.46 0.00 5.14
4151 8621 1.262640 GGAAGGGGAGGCTGTACGAA 61.263 60.000 0.00 0.00 0.00 3.85
4319 8789 2.099141 ATGTGCTACATCAACACGCT 57.901 45.000 0.00 0.00 32.38 5.07
4363 8917 9.981460 AGGATAGTAAATCCATCAAGAAACTTT 57.019 29.630 6.79 0.00 40.61 2.66
4365 8919 8.997734 AGAGGATAGTAAATCCATCAAGAAACT 58.002 33.333 6.79 0.00 40.61 2.66
4412 9742 7.170828 CGGAGCTTACAATATGTGCTATTTGTA 59.829 37.037 0.00 0.00 30.97 2.41
4413 9743 6.017934 CGGAGCTTACAATATGTGCTATTTGT 60.018 38.462 0.00 0.00 30.97 2.83
4414 9744 6.202762 TCGGAGCTTACAATATGTGCTATTTG 59.797 38.462 0.00 0.00 30.97 2.32
4415 9745 6.288294 TCGGAGCTTACAATATGTGCTATTT 58.712 36.000 0.00 0.00 30.97 1.40
4416 9746 5.853936 TCGGAGCTTACAATATGTGCTATT 58.146 37.500 0.00 0.00 30.97 1.73
4417 9747 5.468540 TCGGAGCTTACAATATGTGCTAT 57.531 39.130 0.00 0.00 30.97 2.97
4421 9751 7.015226 TGAAATTCGGAGCTTACAATATGTG 57.985 36.000 0.00 0.00 0.00 3.21
4433 9763 1.442769 TGACTGCTGAAATTCGGAGC 58.557 50.000 5.91 2.12 0.00 4.70
4437 9767 5.233050 CCTGTACTATGACTGCTGAAATTCG 59.767 44.000 0.00 0.00 0.00 3.34
4443 9773 4.526650 TGAAACCTGTACTATGACTGCTGA 59.473 41.667 0.00 0.00 0.00 4.26
4467 9797 6.480981 TGCACTGTAAAAAGGACTACAACTAC 59.519 38.462 0.00 0.00 0.00 2.73
4469 9799 5.296035 GTGCACTGTAAAAAGGACTACAACT 59.704 40.000 10.32 0.00 0.00 3.16
4475 9805 4.150897 TCTGTGCACTGTAAAAAGGACT 57.849 40.909 19.41 0.00 0.00 3.85
4479 9809 7.385205 AGTGTAGTATCTGTGCACTGTAAAAAG 59.615 37.037 19.41 5.02 38.74 2.27
4545 9876 9.606631 ACACAAAATAAAGAGGCAAAAATTACA 57.393 25.926 0.00 0.00 0.00 2.41
4594 9925 9.632638 AAATACATCATGAGGCTACTGTAAATT 57.367 29.630 7.40 4.37 0.00 1.82
4637 9968 9.239002 CAACACTAGAGTCAATACTGTAATAGC 57.761 37.037 0.00 0.00 35.56 2.97
4638 9969 9.239002 GCAACACTAGAGTCAATACTGTAATAG 57.761 37.037 0.00 0.00 35.56 1.73
4666 9997 4.580580 ACGGATTGAAAGTTTCTTGCTCTT 59.419 37.500 16.33 0.00 0.00 2.85
4701 10032 9.687717 CAAAACATGTAAACAAACTGAAATGAC 57.312 29.630 0.00 0.00 0.00 3.06
4734 10065 3.002348 GCTACCGTAAATTCACCATCAGC 59.998 47.826 0.00 0.00 0.00 4.26
4751 10082 5.411053 GCTCTAAATTCATCATCAGGCTACC 59.589 44.000 0.00 0.00 0.00 3.18
4779 10110 7.665559 TCAGCAACCAGAAATTCAAGTAACTAT 59.334 33.333 0.00 0.00 0.00 2.12
4786 10117 4.387862 GCATTCAGCAACCAGAAATTCAAG 59.612 41.667 0.00 0.00 44.79 3.02
4787 10118 4.309099 GCATTCAGCAACCAGAAATTCAA 58.691 39.130 0.00 0.00 44.79 2.69
4821 10152 5.832539 AGAAGATTCTTGTGGAAGGAAGA 57.167 39.130 3.03 0.00 37.36 2.87
4889 10220 8.896320 AAGGTTTGTTGTTCTTTAAAACACTT 57.104 26.923 0.00 0.00 38.80 3.16
4890 10221 8.145122 TGAAGGTTTGTTGTTCTTTAAAACACT 58.855 29.630 0.00 0.00 38.80 3.55
4891 10222 8.300495 TGAAGGTTTGTTGTTCTTTAAAACAC 57.700 30.769 0.00 0.00 38.80 3.32
4896 10227 8.766151 GTTGTTTGAAGGTTTGTTGTTCTTTAA 58.234 29.630 0.00 0.00 0.00 1.52
4920 10251 3.165875 TGTCTCCTCGAGATCTTTGGTT 58.834 45.455 15.71 0.00 40.98 3.67
4992 10323 1.751924 ACTAGGATCCAACGCTCTCAC 59.248 52.381 15.82 0.00 0.00 3.51
5000 10331 1.279025 TGGCCCCACTAGGATCCAAC 61.279 60.000 15.82 0.00 38.24 3.77
5032 10363 2.528743 GCGGTGCCTCATCGTCATG 61.529 63.158 1.37 0.00 40.42 3.07
5089 10420 4.096003 AGGTGCCCCCGACAATCG 62.096 66.667 0.00 0.00 40.07 3.34
5129 10460 0.453782 CACTGTCGTGTCGCGTATCA 60.454 55.000 5.77 1.28 42.13 2.15
5137 10468 3.097728 CGGCGTCACTGTCGTGTC 61.098 66.667 0.00 0.00 41.89 3.67
5164 10495 5.358298 AATAGAAAAGTTCGTGAACAGCC 57.642 39.130 14.61 1.93 43.47 4.85
5277 10608 8.531622 TGTTTAAATTCATGCATACTGTTTGG 57.468 30.769 0.00 0.00 0.00 3.28
5284 10615 7.758980 TGTGGACATGTTTAAATTCATGCATAC 59.241 33.333 15.22 12.28 43.34 2.39
5285 10616 7.834803 TGTGGACATGTTTAAATTCATGCATA 58.165 30.769 15.22 5.68 43.34 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.