Multiple sequence alignment - TraesCS6D01G103200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G103200 chr6D 100.000 4606 0 0 1 4606 67318251 67322856 0.000000e+00 8506.0
1 TraesCS6D01G103200 chr6A 94.017 2691 122 26 1254 3918 84693987 84696664 0.000000e+00 4041.0
2 TraesCS6D01G103200 chr6A 98.485 66 0 1 3053 3118 84909700 84909636 1.050000e-21 115.0
3 TraesCS6D01G103200 chr6B 96.089 1892 61 5 1254 3140 142087573 142089456 0.000000e+00 3072.0
4 TraesCS6D01G103200 chr6B 89.812 903 77 13 3125 4022 142089469 142090361 0.000000e+00 1144.0
5 TraesCS6D01G103200 chr6B 82.245 597 67 18 1902 2479 142131402 142131978 3.220000e-131 479.0
6 TraesCS6D01G103200 chr6B 95.000 200 9 1 4366 4565 142090550 142090748 3.460000e-81 313.0
7 TraesCS6D01G103200 chr6B 96.970 66 1 1 3053 3118 142131977 142132041 4.870000e-20 110.0
8 TraesCS6D01G103200 chr6B 98.305 59 1 0 4066 4124 142090471 142090529 2.270000e-18 104.0
9 TraesCS6D01G103200 chr2D 98.123 746 14 0 509 1254 190538935 190539680 0.000000e+00 1301.0
10 TraesCS6D01G103200 chr2D 98.123 746 14 0 509 1254 396437731 396436986 0.000000e+00 1301.0
11 TraesCS6D01G103200 chr2D 96.477 511 16 1 1 509 489634530 489635040 0.000000e+00 843.0
12 TraesCS6D01G103200 chr4D 97.603 751 17 1 504 1254 26068636 26069385 0.000000e+00 1286.0
13 TraesCS6D01G103200 chr4D 97.587 746 18 0 509 1254 26075648 26076393 0.000000e+00 1279.0
14 TraesCS6D01G103200 chr4D 96.464 509 16 1 1 509 179299578 179300084 0.000000e+00 839.0
15 TraesCS6D01G103200 chr4D 96.457 508 18 0 2 509 469226780 469226273 0.000000e+00 839.0
16 TraesCS6D01G103200 chr4D 96.457 508 18 0 2 509 469232621 469232114 0.000000e+00 839.0
17 TraesCS6D01G103200 chr3D 97.721 746 17 0 509 1254 182439985 182440730 0.000000e+00 1284.0
18 TraesCS6D01G103200 chr3D 96.457 508 18 0 2 509 609353033 609353540 0.000000e+00 839.0
19 TraesCS6D01G103200 chr3D 80.198 101 16 4 1876 1974 594505805 594505903 6.390000e-09 73.1
20 TraesCS6D01G103200 chr7D 97.587 746 18 0 509 1254 105728492 105729237 0.000000e+00 1279.0
21 TraesCS6D01G103200 chr7D 97.587 746 18 0 509 1254 454824841 454824096 0.000000e+00 1279.0
22 TraesCS6D01G103200 chr7D 91.170 906 63 15 354 1251 551640773 551641669 0.000000e+00 1214.0
23 TraesCS6D01G103200 chr7D 96.647 507 16 1 3 509 153954725 153954220 0.000000e+00 841.0
24 TraesCS6D01G103200 chr7D 96.457 508 18 0 2 509 361853451 361853958 0.000000e+00 839.0
25 TraesCS6D01G103200 chr1D 97.587 746 18 0 509 1254 121509874 121509129 0.000000e+00 1279.0
26 TraesCS6D01G103200 chr1D 96.464 509 18 0 1 509 451734688 451734180 0.000000e+00 841.0
27 TraesCS6D01G103200 chrUn 96.464 509 18 0 1 509 153479160 153478652 0.000000e+00 841.0
28 TraesCS6D01G103200 chr3A 81.000 100 17 2 1876 1974 725342654 725342752 1.370000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G103200 chr6D 67318251 67322856 4605 False 8506.00 8506 100.0000 1 4606 1 chr6D.!!$F1 4605
1 TraesCS6D01G103200 chr6A 84693987 84696664 2677 False 4041.00 4041 94.0170 1254 3918 1 chr6A.!!$F1 2664
2 TraesCS6D01G103200 chr6B 142087573 142090748 3175 False 1158.25 3072 94.8015 1254 4565 4 chr6B.!!$F1 3311
3 TraesCS6D01G103200 chr6B 142131402 142132041 639 False 294.50 479 89.6075 1902 3118 2 chr6B.!!$F2 1216
4 TraesCS6D01G103200 chr2D 190538935 190539680 745 False 1301.00 1301 98.1230 509 1254 1 chr2D.!!$F1 745
5 TraesCS6D01G103200 chr2D 396436986 396437731 745 True 1301.00 1301 98.1230 509 1254 1 chr2D.!!$R1 745
6 TraesCS6D01G103200 chr2D 489634530 489635040 510 False 843.00 843 96.4770 1 509 1 chr2D.!!$F2 508
7 TraesCS6D01G103200 chr4D 26068636 26069385 749 False 1286.00 1286 97.6030 504 1254 1 chr4D.!!$F1 750
8 TraesCS6D01G103200 chr4D 26075648 26076393 745 False 1279.00 1279 97.5870 509 1254 1 chr4D.!!$F2 745
9 TraesCS6D01G103200 chr4D 179299578 179300084 506 False 839.00 839 96.4640 1 509 1 chr4D.!!$F3 508
10 TraesCS6D01G103200 chr4D 469226273 469226780 507 True 839.00 839 96.4570 2 509 1 chr4D.!!$R1 507
11 TraesCS6D01G103200 chr4D 469232114 469232621 507 True 839.00 839 96.4570 2 509 1 chr4D.!!$R2 507
12 TraesCS6D01G103200 chr3D 182439985 182440730 745 False 1284.00 1284 97.7210 509 1254 1 chr3D.!!$F1 745
13 TraesCS6D01G103200 chr3D 609353033 609353540 507 False 839.00 839 96.4570 2 509 1 chr3D.!!$F3 507
14 TraesCS6D01G103200 chr7D 105728492 105729237 745 False 1279.00 1279 97.5870 509 1254 1 chr7D.!!$F1 745
15 TraesCS6D01G103200 chr7D 454824096 454824841 745 True 1279.00 1279 97.5870 509 1254 1 chr7D.!!$R2 745
16 TraesCS6D01G103200 chr7D 551640773 551641669 896 False 1214.00 1214 91.1700 354 1251 1 chr7D.!!$F3 897
17 TraesCS6D01G103200 chr7D 153954220 153954725 505 True 841.00 841 96.6470 3 509 1 chr7D.!!$R1 506
18 TraesCS6D01G103200 chr7D 361853451 361853958 507 False 839.00 839 96.4570 2 509 1 chr7D.!!$F2 507
19 TraesCS6D01G103200 chr1D 121509129 121509874 745 True 1279.00 1279 97.5870 509 1254 1 chr1D.!!$R1 745
20 TraesCS6D01G103200 chr1D 451734180 451734688 508 True 841.00 841 96.4640 1 509 1 chr1D.!!$R2 508
21 TraesCS6D01G103200 chrUn 153478652 153479160 508 True 841.00 841 96.4640 1 509 1 chrUn.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 716 0.768622 ACGGTTTCCTGACCATGGAA 59.231 50.000 21.47 5.12 41.33 3.53 F
1233 1240 1.135139 CCTCGACATCGTGGTTCATCT 59.865 52.381 13.02 0.00 45.02 2.90 F
1827 1834 2.100252 GCATGCCATTGCTTGATACAGT 59.900 45.455 6.36 0.00 43.40 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 1879 0.037303 ACAGCTTGGATCACCACCAG 59.963 55.0 0.00 0.00 46.8 4.00 R
2720 2751 0.037419 TGCGAACTAGTGCATGCAGA 60.037 50.0 23.41 11.54 35.9 4.26 R
3810 3908 0.243907 ACAAGATCCTGACGACACGG 59.756 55.0 0.00 0.00 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 174 2.270527 GAGGCCAAGGACCAGAGC 59.729 66.667 5.01 0.00 0.00 4.09
215 218 3.008485 GGAGGAGCTCAAGGAAGAAGAAA 59.992 47.826 17.19 0.00 31.08 2.52
251 254 1.918800 CCCCTTCTCTTCCGGTGGT 60.919 63.158 0.00 0.00 0.00 4.16
264 267 2.280797 GTGGTGCCAGAACGCAGA 60.281 61.111 0.00 0.00 40.05 4.26
606 609 8.744568 TGTTCATGCTATAATTGTGTTATCCA 57.255 30.769 0.00 0.00 0.00 3.41
713 716 0.768622 ACGGTTTCCTGACCATGGAA 59.231 50.000 21.47 5.12 41.33 3.53
733 736 7.715266 TGGAAATTGGATGTCATTGATAACA 57.285 32.000 0.00 0.00 0.00 2.41
832 836 9.030301 GTTTGCTAAAGCTTTTCTAATGTCAAA 57.970 29.630 18.47 12.13 42.66 2.69
990 994 1.409427 ACGGATCGAGACTGGGATTTC 59.591 52.381 0.00 0.00 0.00 2.17
997 1001 2.757868 CGAGACTGGGATTTCTCACTCT 59.242 50.000 0.00 0.00 38.59 3.24
1233 1240 1.135139 CCTCGACATCGTGGTTCATCT 59.865 52.381 13.02 0.00 45.02 2.90
1309 1316 2.357517 AAGAGGTTCACCAGCGCG 60.358 61.111 0.00 0.00 38.89 6.86
1328 1335 2.552315 GCGGAGGATTTTGACAAGTTCA 59.448 45.455 0.00 0.00 0.00 3.18
1398 1405 2.852449 AGATCCAAGCCTATCCAACCAA 59.148 45.455 0.00 0.00 0.00 3.67
1766 1773 2.643551 CACCCAGTCTTGTTTCACTGT 58.356 47.619 0.00 0.00 38.74 3.55
1827 1834 2.100252 GCATGCCATTGCTTGATACAGT 59.900 45.455 6.36 0.00 43.40 3.55
1828 1835 3.316029 GCATGCCATTGCTTGATACAGTA 59.684 43.478 6.36 0.00 43.40 2.74
1872 1879 2.629051 CAAGGATAAGTGTCGGGGTTC 58.371 52.381 0.00 0.00 0.00 3.62
1951 1958 7.170998 CGTAGTGTCCTTTTGAATACTTTGTCT 59.829 37.037 0.00 0.00 0.00 3.41
2372 2402 4.699637 TGTCGTATTTTGTCCAGTCAAGT 58.300 39.130 0.00 0.00 0.00 3.16
2815 2846 3.009033 TGGGTAGATTTTCTGGACCACTG 59.991 47.826 0.00 0.00 28.81 3.66
2890 2921 4.392138 GTCCTGTAGAATTTGTTAAGCGCT 59.608 41.667 2.64 2.64 0.00 5.92
2920 2951 6.805713 AGGTGAAAGAAAACATGTTCGAATT 58.194 32.000 12.39 1.85 32.50 2.17
3128 3214 5.821470 CACCAGTTGCTCTCATCTTCATATT 59.179 40.000 0.00 0.00 0.00 1.28
3157 3243 5.635417 ACTTTGCTTTTATGCTCCTCTTC 57.365 39.130 0.00 0.00 0.00 2.87
3158 3244 5.320277 ACTTTGCTTTTATGCTCCTCTTCT 58.680 37.500 0.00 0.00 0.00 2.85
3244 3332 6.489700 TGTGACCAATTTGCTTATCAGAGAAA 59.510 34.615 0.00 0.00 0.00 2.52
3245 3333 7.177216 TGTGACCAATTTGCTTATCAGAGAAAT 59.823 33.333 0.00 0.00 0.00 2.17
3250 3338 9.649167 CCAATTTGCTTATCAGAGAAATTCTTT 57.351 29.630 0.00 0.00 32.41 2.52
3257 3345 9.777297 GCTTATCAGAGAAATTCTTTATCTCCT 57.223 33.333 0.00 0.00 39.04 3.69
3333 3422 8.327941 TGAGTCTTTTGAATATTGAGGTCTTG 57.672 34.615 0.00 0.00 0.00 3.02
3356 3451 4.993029 ACTGCTGGAAGTCTATGTACTC 57.007 45.455 0.00 0.00 35.30 2.59
3363 3458 6.630444 TGGAAGTCTATGTACTCGGATAAC 57.370 41.667 0.00 0.00 0.00 1.89
3389 3484 5.515797 ACAAAAGTTTCAGCTTACTTCCC 57.484 39.130 6.20 0.00 33.66 3.97
3483 3578 7.050377 TGTCCATTCAGTCAGAAATTCCTATC 58.950 38.462 0.00 0.00 40.22 2.08
3484 3579 7.050377 GTCCATTCAGTCAGAAATTCCTATCA 58.950 38.462 0.00 0.00 40.22 2.15
3633 3728 3.646162 TGTGTTGGACCAGTGATAGAAGT 59.354 43.478 0.00 0.00 0.00 3.01
3675 3772 8.508062 GTGTTGTTTTGTCCAAACCTTTTTAAT 58.492 29.630 0.00 0.00 43.87 1.40
3676 3773 8.507249 TGTTGTTTTGTCCAAACCTTTTTAATG 58.493 29.630 0.00 0.00 43.87 1.90
3738 3835 6.264518 CAGTTTCCAGTTGGGTAGTATGTTTT 59.735 38.462 0.00 0.00 38.11 2.43
3780 3877 7.270047 TGGGCAGTATGTAAAGATGTTACTAC 58.730 38.462 0.00 0.00 39.31 2.73
3783 3880 9.680315 GGCAGTATGTAAAGATGTTACTACTAG 57.320 37.037 0.00 0.00 39.31 2.57
3824 3922 1.069513 TGAAAACCGTGTCGTCAGGAT 59.930 47.619 3.92 0.00 0.00 3.24
3829 3927 0.243907 CCGTGTCGTCAGGATCTTGT 59.756 55.000 4.57 0.00 0.00 3.16
3830 3928 1.336887 CCGTGTCGTCAGGATCTTGTT 60.337 52.381 4.57 0.00 0.00 2.83
3838 3936 3.725895 CGTCAGGATCTTGTTGCATTTCG 60.726 47.826 4.57 0.00 0.00 3.46
3843 3941 5.691305 CAGGATCTTGTTGCATTTCGAAAAA 59.309 36.000 15.66 1.74 0.00 1.94
3853 3951 4.203077 GCATTTCGAAAAATTGTGTGTGC 58.797 39.130 15.66 12.59 32.69 4.57
3890 3988 6.339730 TGTTTGCACAAGAAATGAGATGTTT 58.660 32.000 0.00 0.00 0.00 2.83
3944 4042 5.182950 TGACACTTGTTGAACATTGAACTGT 59.817 36.000 12.72 4.58 0.00 3.55
3969 4067 3.130340 TCTCCACTTTTGAAAAGTGTGGC 59.870 43.478 35.08 0.00 44.52 5.01
3985 4083 3.435327 GTGTGGCGAACATCATCAAACTA 59.565 43.478 0.00 0.00 41.97 2.24
4040 4185 7.443879 TGCAGTTAGATGTCATTGTCTTTGTTA 59.556 33.333 0.00 0.00 0.00 2.41
4060 4205 3.710209 AAACCTAGAGCAACAGAGCAT 57.290 42.857 0.00 0.00 36.85 3.79
4062 4207 1.209019 ACCTAGAGCAACAGAGCATGG 59.791 52.381 0.00 0.00 36.85 3.66
4063 4208 1.209019 CCTAGAGCAACAGAGCATGGT 59.791 52.381 0.00 0.00 36.85 3.55
4102 4266 3.390135 TGCCTAGTTTCACAGAAGAACG 58.610 45.455 0.00 0.00 0.00 3.95
4124 4288 3.067320 GCAAACTGAGGAATAAGATGGCC 59.933 47.826 0.00 0.00 0.00 5.36
4126 4290 1.777272 ACTGAGGAATAAGATGGCCCC 59.223 52.381 0.00 0.00 0.00 5.80
4127 4291 1.776667 CTGAGGAATAAGATGGCCCCA 59.223 52.381 0.00 0.00 0.00 4.96
4128 4292 2.175499 CTGAGGAATAAGATGGCCCCAA 59.825 50.000 0.00 0.00 0.00 4.12
4129 4293 2.791179 TGAGGAATAAGATGGCCCCAAT 59.209 45.455 0.00 0.00 0.00 3.16
4130 4294 3.181429 TGAGGAATAAGATGGCCCCAATC 60.181 47.826 0.00 0.00 0.00 2.67
4131 4295 2.110721 AGGAATAAGATGGCCCCAATCC 59.889 50.000 0.00 0.00 0.00 3.01
4132 4296 2.529632 GAATAAGATGGCCCCAATCCC 58.470 52.381 0.00 0.00 0.00 3.85
4133 4297 0.786435 ATAAGATGGCCCCAATCCCC 59.214 55.000 0.00 0.00 0.00 4.81
4135 4299 1.953100 AAGATGGCCCCAATCCCCTG 61.953 60.000 0.00 0.00 0.00 4.45
4136 4300 3.441608 ATGGCCCCAATCCCCTGG 61.442 66.667 0.00 0.00 36.10 4.45
4141 4305 2.772924 CCCAATCCCCTGGCAGTT 59.227 61.111 14.43 0.00 34.88 3.16
4143 4307 1.380380 CCAATCCCCTGGCAGTTCC 60.380 63.158 14.43 0.00 0.00 3.62
4144 4308 1.383799 CAATCCCCTGGCAGTTCCA 59.616 57.895 14.43 0.00 44.18 3.53
4145 4309 0.251742 CAATCCCCTGGCAGTTCCAA 60.252 55.000 14.43 0.00 46.01 3.53
4146 4310 0.251787 AATCCCCTGGCAGTTCCAAC 60.252 55.000 14.43 0.00 46.01 3.77
4147 4311 1.142688 ATCCCCTGGCAGTTCCAACT 61.143 55.000 14.43 0.00 46.01 3.16
4148 4312 1.153756 CCCCTGGCAGTTCCAACTT 59.846 57.895 14.43 0.00 46.01 2.66
4149 4313 0.404040 CCCCTGGCAGTTCCAACTTA 59.596 55.000 14.43 0.00 46.01 2.24
4150 4314 1.614317 CCCCTGGCAGTTCCAACTTAG 60.614 57.143 14.43 0.00 46.01 2.18
4151 4315 1.351017 CCCTGGCAGTTCCAACTTAGA 59.649 52.381 14.43 0.00 46.01 2.10
4152 4316 2.224769 CCCTGGCAGTTCCAACTTAGAA 60.225 50.000 14.43 0.00 46.01 2.10
4153 4317 3.077359 CCTGGCAGTTCCAACTTAGAAG 58.923 50.000 14.43 0.00 46.01 2.85
4154 4318 3.244561 CCTGGCAGTTCCAACTTAGAAGA 60.245 47.826 14.43 0.00 46.01 2.87
4155 4319 4.566488 CCTGGCAGTTCCAACTTAGAAGAT 60.566 45.833 14.43 0.00 46.01 2.40
4156 4320 4.985538 TGGCAGTTCCAACTTAGAAGATT 58.014 39.130 0.00 0.00 43.21 2.40
4157 4321 5.003804 TGGCAGTTCCAACTTAGAAGATTC 58.996 41.667 0.00 0.00 43.21 2.52
4158 4322 5.003804 GGCAGTTCCAACTTAGAAGATTCA 58.996 41.667 0.00 0.00 37.08 2.57
4159 4323 5.649831 GGCAGTTCCAACTTAGAAGATTCAT 59.350 40.000 0.00 0.00 37.08 2.57
4160 4324 6.823689 GGCAGTTCCAACTTAGAAGATTCATA 59.176 38.462 0.00 0.00 37.08 2.15
4161 4325 7.011857 GGCAGTTCCAACTTAGAAGATTCATAG 59.988 40.741 0.00 0.00 37.08 2.23
4162 4326 7.466590 GCAGTTCCAACTTAGAAGATTCATAGC 60.467 40.741 0.00 0.00 37.08 2.97
4163 4327 7.768120 CAGTTCCAACTTAGAAGATTCATAGCT 59.232 37.037 0.00 0.00 37.08 3.32
4164 4328 7.984617 AGTTCCAACTTAGAAGATTCATAGCTC 59.015 37.037 0.00 0.00 35.21 4.09
4165 4329 6.821388 TCCAACTTAGAAGATTCATAGCTCC 58.179 40.000 0.00 0.00 0.00 4.70
4166 4330 6.613271 TCCAACTTAGAAGATTCATAGCTCCT 59.387 38.462 0.00 0.00 0.00 3.69
4167 4331 6.928492 CCAACTTAGAAGATTCATAGCTCCTC 59.072 42.308 0.00 0.00 0.00 3.71
4168 4332 7.418368 CCAACTTAGAAGATTCATAGCTCCTCA 60.418 40.741 0.00 0.00 0.00 3.86
4169 4333 7.854166 ACTTAGAAGATTCATAGCTCCTCAT 57.146 36.000 0.00 0.00 0.00 2.90
4170 4334 7.669427 ACTTAGAAGATTCATAGCTCCTCATG 58.331 38.462 0.00 0.00 0.00 3.07
4171 4335 5.486735 AGAAGATTCATAGCTCCTCATGG 57.513 43.478 0.00 0.00 0.00 3.66
4172 4336 5.153675 AGAAGATTCATAGCTCCTCATGGA 58.846 41.667 0.00 0.00 40.69 3.41
4180 4344 4.111967 TCCTCATGGAGCGTCACA 57.888 55.556 0.00 0.00 37.46 3.58
4181 4345 1.591703 TCCTCATGGAGCGTCACAC 59.408 57.895 0.00 0.00 37.46 3.82
4182 4346 1.807165 CCTCATGGAGCGTCACACG 60.807 63.158 0.00 0.00 39.26 4.49
4192 4356 3.188786 GTCACACGCGGCTCCATC 61.189 66.667 12.47 0.00 0.00 3.51
4193 4357 3.690280 TCACACGCGGCTCCATCA 61.690 61.111 12.47 0.00 0.00 3.07
4194 4358 3.190849 CACACGCGGCTCCATCAG 61.191 66.667 12.47 0.00 0.00 2.90
4195 4359 4.457496 ACACGCGGCTCCATCAGG 62.457 66.667 12.47 0.00 0.00 3.86
4196 4360 4.457496 CACGCGGCTCCATCAGGT 62.457 66.667 12.47 0.00 35.89 4.00
4197 4361 3.706373 ACGCGGCTCCATCAGGTT 61.706 61.111 12.47 0.00 35.89 3.50
4198 4362 2.355986 ACGCGGCTCCATCAGGTTA 61.356 57.895 12.47 0.00 35.89 2.85
4199 4363 1.883084 CGCGGCTCCATCAGGTTAC 60.883 63.158 0.00 0.00 35.89 2.50
4200 4364 1.523938 GCGGCTCCATCAGGTTACC 60.524 63.158 0.00 0.00 35.89 2.85
4201 4365 1.904771 CGGCTCCATCAGGTTACCA 59.095 57.895 3.51 0.00 35.89 3.25
4202 4366 0.179073 CGGCTCCATCAGGTTACCAG 60.179 60.000 3.51 0.00 35.89 4.00
4203 4367 0.464554 GGCTCCATCAGGTTACCAGC 60.465 60.000 3.51 2.12 35.89 4.85
4204 4368 0.253044 GCTCCATCAGGTTACCAGCA 59.747 55.000 3.51 0.00 31.80 4.41
4205 4369 1.745141 GCTCCATCAGGTTACCAGCAG 60.745 57.143 3.51 0.00 31.80 4.24
4206 4370 0.253044 TCCATCAGGTTACCAGCAGC 59.747 55.000 3.51 0.00 35.89 5.25
4207 4371 0.749454 CCATCAGGTTACCAGCAGCC 60.749 60.000 3.51 0.00 0.00 4.85
4208 4372 0.749454 CATCAGGTTACCAGCAGCCC 60.749 60.000 3.51 0.00 0.00 5.19
4209 4373 1.926426 ATCAGGTTACCAGCAGCCCC 61.926 60.000 3.51 0.00 0.00 5.80
4210 4374 2.531685 AGGTTACCAGCAGCCCCA 60.532 61.111 3.51 0.00 0.00 4.96
4211 4375 2.361230 GGTTACCAGCAGCCCCAC 60.361 66.667 0.00 0.00 0.00 4.61
4212 4376 2.746277 GTTACCAGCAGCCCCACG 60.746 66.667 0.00 0.00 0.00 4.94
4213 4377 4.715523 TTACCAGCAGCCCCACGC 62.716 66.667 0.00 0.00 37.98 5.34
4222 4386 3.509659 GCCCCACGCTTCCATAAC 58.490 61.111 0.00 0.00 0.00 1.89
4223 4387 1.377987 GCCCCACGCTTCCATAACA 60.378 57.895 0.00 0.00 0.00 2.41
4224 4388 1.376609 GCCCCACGCTTCCATAACAG 61.377 60.000 0.00 0.00 0.00 3.16
4225 4389 0.035439 CCCCACGCTTCCATAACAGT 60.035 55.000 0.00 0.00 0.00 3.55
4226 4390 1.613255 CCCCACGCTTCCATAACAGTT 60.613 52.381 0.00 0.00 0.00 3.16
4227 4391 1.737793 CCCACGCTTCCATAACAGTTC 59.262 52.381 0.00 0.00 0.00 3.01
4228 4392 1.737793 CCACGCTTCCATAACAGTTCC 59.262 52.381 0.00 0.00 0.00 3.62
4229 4393 2.615493 CCACGCTTCCATAACAGTTCCT 60.615 50.000 0.00 0.00 0.00 3.36
4230 4394 3.074412 CACGCTTCCATAACAGTTCCTT 58.926 45.455 0.00 0.00 0.00 3.36
4231 4395 3.125316 CACGCTTCCATAACAGTTCCTTC 59.875 47.826 0.00 0.00 0.00 3.46
4232 4396 3.008049 ACGCTTCCATAACAGTTCCTTCT 59.992 43.478 0.00 0.00 0.00 2.85
4233 4397 3.372206 CGCTTCCATAACAGTTCCTTCTG 59.628 47.826 0.00 0.00 40.80 3.02
4234 4398 3.127721 GCTTCCATAACAGTTCCTTCTGC 59.872 47.826 0.00 0.00 38.84 4.26
4235 4399 3.350219 TCCATAACAGTTCCTTCTGCC 57.650 47.619 0.00 0.00 38.84 4.85
4236 4400 2.912956 TCCATAACAGTTCCTTCTGCCT 59.087 45.455 0.00 0.00 38.84 4.75
4237 4401 3.330701 TCCATAACAGTTCCTTCTGCCTT 59.669 43.478 0.00 0.00 38.84 4.35
4238 4402 3.691609 CCATAACAGTTCCTTCTGCCTTC 59.308 47.826 0.00 0.00 38.84 3.46
4239 4403 4.326826 CATAACAGTTCCTTCTGCCTTCA 58.673 43.478 0.00 0.00 38.84 3.02
4240 4404 2.262423 ACAGTTCCTTCTGCCTTCAC 57.738 50.000 0.00 0.00 38.84 3.18
4241 4405 1.202818 ACAGTTCCTTCTGCCTTCACC 60.203 52.381 0.00 0.00 38.84 4.02
4242 4406 1.072965 CAGTTCCTTCTGCCTTCACCT 59.927 52.381 0.00 0.00 0.00 4.00
4243 4407 1.349357 AGTTCCTTCTGCCTTCACCTC 59.651 52.381 0.00 0.00 0.00 3.85
4244 4408 0.693049 TTCCTTCTGCCTTCACCTCC 59.307 55.000 0.00 0.00 0.00 4.30
4245 4409 0.178891 TCCTTCTGCCTTCACCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
4246 4410 0.695347 CCTTCTGCCTTCACCTCCTT 59.305 55.000 0.00 0.00 0.00 3.36
4247 4411 1.909302 CCTTCTGCCTTCACCTCCTTA 59.091 52.381 0.00 0.00 0.00 2.69
4248 4412 2.093235 CCTTCTGCCTTCACCTCCTTAG 60.093 54.545 0.00 0.00 0.00 2.18
4249 4413 0.905357 TCTGCCTTCACCTCCTTAGC 59.095 55.000 0.00 0.00 0.00 3.09
4250 4414 0.615331 CTGCCTTCACCTCCTTAGCA 59.385 55.000 0.00 0.00 0.00 3.49
4251 4415 1.003580 CTGCCTTCACCTCCTTAGCAA 59.996 52.381 0.00 0.00 0.00 3.91
4252 4416 1.003580 TGCCTTCACCTCCTTAGCAAG 59.996 52.381 0.00 0.00 0.00 4.01
4253 4417 1.003696 GCCTTCACCTCCTTAGCAAGT 59.996 52.381 0.00 0.00 0.00 3.16
4254 4418 2.704572 CCTTCACCTCCTTAGCAAGTG 58.295 52.381 0.00 0.00 0.00 3.16
4255 4419 2.039084 CCTTCACCTCCTTAGCAAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
4256 4420 3.260884 CCTTCACCTCCTTAGCAAGTGTA 59.739 47.826 0.00 0.00 0.00 2.90
4257 4421 4.080863 CCTTCACCTCCTTAGCAAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
4258 4422 5.491982 CTTCACCTCCTTAGCAAGTGTATT 58.508 41.667 0.00 0.00 0.00 1.89
4259 4423 5.086104 TCACCTCCTTAGCAAGTGTATTC 57.914 43.478 0.00 0.00 0.00 1.75
4260 4424 4.530553 TCACCTCCTTAGCAAGTGTATTCA 59.469 41.667 0.00 0.00 0.00 2.57
4261 4425 4.872691 CACCTCCTTAGCAAGTGTATTCAG 59.127 45.833 0.00 0.00 0.00 3.02
4262 4426 4.532521 ACCTCCTTAGCAAGTGTATTCAGT 59.467 41.667 0.00 0.00 0.00 3.41
4263 4427 5.013183 ACCTCCTTAGCAAGTGTATTCAGTT 59.987 40.000 0.00 0.00 37.67 3.16
4264 4428 5.582665 CCTCCTTAGCAAGTGTATTCAGTTC 59.417 44.000 0.00 0.00 35.32 3.01
4265 4429 5.488341 TCCTTAGCAAGTGTATTCAGTTCC 58.512 41.667 0.00 0.00 35.32 3.62
4266 4430 5.012664 TCCTTAGCAAGTGTATTCAGTTCCA 59.987 40.000 0.00 0.00 35.32 3.53
4267 4431 5.122396 CCTTAGCAAGTGTATTCAGTTCCAC 59.878 44.000 0.00 0.00 35.32 4.02
4268 4432 4.085357 AGCAAGTGTATTCAGTTCCACA 57.915 40.909 0.00 0.00 35.32 4.17
4269 4433 4.460263 AGCAAGTGTATTCAGTTCCACAA 58.540 39.130 0.00 0.00 35.32 3.33
4270 4434 4.516698 AGCAAGTGTATTCAGTTCCACAAG 59.483 41.667 0.00 0.00 35.32 3.16
4271 4435 4.275936 GCAAGTGTATTCAGTTCCACAAGT 59.724 41.667 0.00 0.00 35.32 3.16
4272 4436 5.560953 GCAAGTGTATTCAGTTCCACAAGTC 60.561 44.000 0.00 0.00 35.32 3.01
4273 4437 4.642429 AGTGTATTCAGTTCCACAAGTCC 58.358 43.478 0.00 0.00 0.00 3.85
4274 4438 4.102524 AGTGTATTCAGTTCCACAAGTCCA 59.897 41.667 0.00 0.00 0.00 4.02
4275 4439 4.819630 GTGTATTCAGTTCCACAAGTCCAA 59.180 41.667 0.00 0.00 0.00 3.53
4276 4440 5.473504 GTGTATTCAGTTCCACAAGTCCAAT 59.526 40.000 0.00 0.00 0.00 3.16
4277 4441 6.653320 GTGTATTCAGTTCCACAAGTCCAATA 59.347 38.462 0.00 0.00 0.00 1.90
4278 4442 7.336931 GTGTATTCAGTTCCACAAGTCCAATAT 59.663 37.037 0.00 0.00 0.00 1.28
4279 4443 7.552687 TGTATTCAGTTCCACAAGTCCAATATC 59.447 37.037 0.00 0.00 0.00 1.63
4280 4444 4.843728 TCAGTTCCACAAGTCCAATATCC 58.156 43.478 0.00 0.00 0.00 2.59
4281 4445 4.288366 TCAGTTCCACAAGTCCAATATCCA 59.712 41.667 0.00 0.00 0.00 3.41
4282 4446 4.396166 CAGTTCCACAAGTCCAATATCCAC 59.604 45.833 0.00 0.00 0.00 4.02
4283 4447 4.289672 AGTTCCACAAGTCCAATATCCACT 59.710 41.667 0.00 0.00 0.00 4.00
4284 4448 4.927267 TCCACAAGTCCAATATCCACTT 57.073 40.909 0.00 0.00 0.00 3.16
4285 4449 5.255397 TCCACAAGTCCAATATCCACTTT 57.745 39.130 0.00 0.00 0.00 2.66
4286 4450 5.009631 TCCACAAGTCCAATATCCACTTTG 58.990 41.667 0.00 0.00 0.00 2.77
4287 4451 4.380867 CCACAAGTCCAATATCCACTTTGC 60.381 45.833 0.00 0.00 0.00 3.68
4288 4452 3.763897 ACAAGTCCAATATCCACTTTGCC 59.236 43.478 0.00 0.00 0.00 4.52
4289 4453 4.019174 CAAGTCCAATATCCACTTTGCCT 58.981 43.478 0.00 0.00 0.00 4.75
4290 4454 3.891049 AGTCCAATATCCACTTTGCCTC 58.109 45.455 0.00 0.00 0.00 4.70
4291 4455 3.525199 AGTCCAATATCCACTTTGCCTCT 59.475 43.478 0.00 0.00 0.00 3.69
4292 4456 3.879892 GTCCAATATCCACTTTGCCTCTC 59.120 47.826 0.00 0.00 0.00 3.20
4293 4457 3.782523 TCCAATATCCACTTTGCCTCTCT 59.217 43.478 0.00 0.00 0.00 3.10
4294 4458 4.228210 TCCAATATCCACTTTGCCTCTCTT 59.772 41.667 0.00 0.00 0.00 2.85
4295 4459 4.578105 CCAATATCCACTTTGCCTCTCTTC 59.422 45.833 0.00 0.00 0.00 2.87
4296 4460 5.435291 CAATATCCACTTTGCCTCTCTTCT 58.565 41.667 0.00 0.00 0.00 2.85
4297 4461 2.847327 TCCACTTTGCCTCTCTTCTG 57.153 50.000 0.00 0.00 0.00 3.02
4298 4462 2.329267 TCCACTTTGCCTCTCTTCTGA 58.671 47.619 0.00 0.00 0.00 3.27
4299 4463 2.909006 TCCACTTTGCCTCTCTTCTGAT 59.091 45.455 0.00 0.00 0.00 2.90
4300 4464 3.055530 TCCACTTTGCCTCTCTTCTGATC 60.056 47.826 0.00 0.00 0.00 2.92
4301 4465 3.269178 CACTTTGCCTCTCTTCTGATCC 58.731 50.000 0.00 0.00 0.00 3.36
4302 4466 2.909006 ACTTTGCCTCTCTTCTGATCCA 59.091 45.455 0.00 0.00 0.00 3.41
4303 4467 3.269178 CTTTGCCTCTCTTCTGATCCAC 58.731 50.000 0.00 0.00 0.00 4.02
4304 4468 2.244486 TGCCTCTCTTCTGATCCACT 57.756 50.000 0.00 0.00 0.00 4.00
4305 4469 1.829849 TGCCTCTCTTCTGATCCACTG 59.170 52.381 0.00 0.00 0.00 3.66
4306 4470 2.106566 GCCTCTCTTCTGATCCACTGA 58.893 52.381 0.00 0.00 0.00 3.41
4307 4471 2.159114 GCCTCTCTTCTGATCCACTGAC 60.159 54.545 0.00 0.00 0.00 3.51
4308 4472 3.364549 CCTCTCTTCTGATCCACTGACT 58.635 50.000 0.00 0.00 0.00 3.41
4309 4473 3.381272 CCTCTCTTCTGATCCACTGACTC 59.619 52.174 0.00 0.00 0.00 3.36
4310 4474 4.272489 CTCTCTTCTGATCCACTGACTCT 58.728 47.826 0.00 0.00 0.00 3.24
4311 4475 4.671831 TCTCTTCTGATCCACTGACTCTT 58.328 43.478 0.00 0.00 0.00 2.85
4312 4476 4.462132 TCTCTTCTGATCCACTGACTCTTG 59.538 45.833 0.00 0.00 0.00 3.02
4313 4477 3.513119 TCTTCTGATCCACTGACTCTTGG 59.487 47.826 0.00 0.00 0.00 3.61
4314 4478 2.182827 TCTGATCCACTGACTCTTGGG 58.817 52.381 0.00 0.00 33.25 4.12
4315 4479 0.615331 TGATCCACTGACTCTTGGGC 59.385 55.000 0.00 0.00 33.25 5.36
4316 4480 0.615331 GATCCACTGACTCTTGGGCA 59.385 55.000 0.00 0.00 33.25 5.36
4317 4481 1.211457 GATCCACTGACTCTTGGGCAT 59.789 52.381 0.00 0.00 33.25 4.40
4318 4482 0.325933 TCCACTGACTCTTGGGCATG 59.674 55.000 0.00 0.00 33.25 4.06
4319 4483 1.310933 CCACTGACTCTTGGGCATGC 61.311 60.000 9.90 9.90 29.39 4.06
4320 4484 0.322277 CACTGACTCTTGGGCATGCT 60.322 55.000 18.92 0.00 29.39 3.79
4321 4485 0.035630 ACTGACTCTTGGGCATGCTC 60.036 55.000 18.92 15.59 29.39 4.26
4322 4486 1.078918 TGACTCTTGGGCATGCTCG 60.079 57.895 18.92 2.75 0.00 5.03
4323 4487 1.817099 GACTCTTGGGCATGCTCGG 60.817 63.158 18.92 10.86 0.00 4.63
4324 4488 2.244117 GACTCTTGGGCATGCTCGGA 62.244 60.000 18.92 14.70 0.00 4.55
4325 4489 1.817099 CTCTTGGGCATGCTCGGAC 60.817 63.158 18.92 0.00 0.00 4.79
4326 4490 2.046023 CTTGGGCATGCTCGGACA 60.046 61.111 18.92 6.56 0.00 4.02
4327 4491 1.675310 CTTGGGCATGCTCGGACAA 60.675 57.895 18.92 13.42 0.00 3.18
4328 4492 1.926511 CTTGGGCATGCTCGGACAAC 61.927 60.000 18.92 0.00 0.00 3.32
4329 4493 2.359850 GGGCATGCTCGGACAACA 60.360 61.111 18.92 0.00 0.00 3.33
4330 4494 1.750399 GGGCATGCTCGGACAACAT 60.750 57.895 18.92 0.00 0.00 2.71
4331 4495 1.430632 GGCATGCTCGGACAACATG 59.569 57.895 18.92 0.00 43.21 3.21
4332 4496 1.430632 GCATGCTCGGACAACATGG 59.569 57.895 11.37 0.00 41.17 3.66
4333 4497 1.308069 GCATGCTCGGACAACATGGT 61.308 55.000 11.37 0.00 41.17 3.55
4334 4498 2.011548 GCATGCTCGGACAACATGGTA 61.012 52.381 11.37 0.00 41.17 3.25
4335 4499 1.665679 CATGCTCGGACAACATGGTAC 59.334 52.381 0.00 0.00 37.99 3.34
4355 4519 3.558674 GCACCTTCTGCATGTAGGT 57.441 52.632 11.15 7.88 45.64 3.08
4356 4520 2.691409 GCACCTTCTGCATGTAGGTA 57.309 50.000 11.15 0.00 43.36 3.08
4357 4521 2.555199 GCACCTTCTGCATGTAGGTAG 58.445 52.381 11.15 8.59 43.36 3.18
4358 4522 2.168521 GCACCTTCTGCATGTAGGTAGA 59.831 50.000 11.15 0.00 43.36 2.59
4359 4523 3.786635 CACCTTCTGCATGTAGGTAGAC 58.213 50.000 11.15 0.00 43.36 2.59
4360 4524 3.449018 CACCTTCTGCATGTAGGTAGACT 59.551 47.826 11.15 0.00 43.36 3.24
4361 4525 3.449018 ACCTTCTGCATGTAGGTAGACTG 59.551 47.826 11.15 0.44 43.39 3.51
4362 4526 3.701542 CCTTCTGCATGTAGGTAGACTGA 59.298 47.826 11.15 0.00 0.00 3.41
4363 4527 4.343526 CCTTCTGCATGTAGGTAGACTGAT 59.656 45.833 11.15 0.00 0.00 2.90
4364 4528 4.926140 TCTGCATGTAGGTAGACTGATG 57.074 45.455 11.15 0.00 0.00 3.07
4365 4529 3.068732 TCTGCATGTAGGTAGACTGATGC 59.931 47.826 11.15 0.00 42.40 3.91
4366 4530 2.223805 TGCATGTAGGTAGACTGATGCG 60.224 50.000 0.00 0.00 43.79 4.73
4367 4531 2.034685 GCATGTAGGTAGACTGATGCGA 59.965 50.000 0.00 0.00 36.94 5.10
4368 4532 3.633235 CATGTAGGTAGACTGATGCGAC 58.367 50.000 0.00 0.00 0.00 5.19
4432 4596 2.200081 TCTTAGGCTTTCCTCCAGCAT 58.800 47.619 0.00 0.00 43.06 3.79
4446 4610 3.368822 GCATCCAACTGCTTGGCA 58.631 55.556 0.00 0.00 46.15 4.92
4475 4639 4.981806 TTACAGGTGCCATAGATTTTGC 57.018 40.909 0.00 0.00 0.00 3.68
4499 4663 2.310233 CCTGCGACTGTGAACACGG 61.310 63.158 11.58 11.58 43.20 4.94
4534 4698 5.127693 ACTGCTCATCTTGACCGATATAC 57.872 43.478 0.00 0.00 0.00 1.47
4565 4729 7.475771 CTCTTCATGGAGCTAGTTCATTTAC 57.524 40.000 8.96 0.00 0.00 2.01
4566 4730 6.349300 TCTTCATGGAGCTAGTTCATTTACC 58.651 40.000 8.96 0.00 0.00 2.85
4567 4731 5.957771 TCATGGAGCTAGTTCATTTACCT 57.042 39.130 8.96 0.00 0.00 3.08
4568 4732 5.674525 TCATGGAGCTAGTTCATTTACCTG 58.325 41.667 8.96 0.00 0.00 4.00
4569 4733 5.189736 TCATGGAGCTAGTTCATTTACCTGT 59.810 40.000 8.96 0.00 0.00 4.00
4570 4734 5.499004 TGGAGCTAGTTCATTTACCTGTT 57.501 39.130 8.96 0.00 0.00 3.16
4571 4735 5.488341 TGGAGCTAGTTCATTTACCTGTTC 58.512 41.667 8.96 0.00 0.00 3.18
4572 4736 4.567159 GGAGCTAGTTCATTTACCTGTTCG 59.433 45.833 8.96 0.00 0.00 3.95
4573 4737 4.504858 AGCTAGTTCATTTACCTGTTCGG 58.495 43.478 0.00 0.00 39.35 4.30
4574 4738 4.222145 AGCTAGTTCATTTACCTGTTCGGA 59.778 41.667 0.00 0.00 36.31 4.55
4575 4739 4.567159 GCTAGTTCATTTACCTGTTCGGAG 59.433 45.833 0.00 0.00 36.31 4.63
4576 4740 4.618920 AGTTCATTTACCTGTTCGGAGT 57.381 40.909 0.00 0.00 36.31 3.85
4577 4741 4.566987 AGTTCATTTACCTGTTCGGAGTC 58.433 43.478 0.00 0.00 36.31 3.36
4578 4742 3.604875 TCATTTACCTGTTCGGAGTCC 57.395 47.619 0.00 0.00 36.31 3.85
4579 4743 2.235402 TCATTTACCTGTTCGGAGTCCC 59.765 50.000 2.80 0.00 36.31 4.46
4580 4744 2.019807 TTTACCTGTTCGGAGTCCCT 57.980 50.000 2.80 0.00 36.31 4.20
4581 4745 2.019807 TTACCTGTTCGGAGTCCCTT 57.980 50.000 2.80 0.00 36.31 3.95
4582 4746 2.019807 TACCTGTTCGGAGTCCCTTT 57.980 50.000 2.80 0.00 36.31 3.11
4583 4747 0.396811 ACCTGTTCGGAGTCCCTTTG 59.603 55.000 2.80 0.00 36.31 2.77
4584 4748 0.955919 CCTGTTCGGAGTCCCTTTGC 60.956 60.000 2.80 0.00 33.16 3.68
4585 4749 0.035458 CTGTTCGGAGTCCCTTTGCT 59.965 55.000 2.80 0.00 0.00 3.91
4586 4750 0.034896 TGTTCGGAGTCCCTTTGCTC 59.965 55.000 2.80 0.00 0.00 4.26
4587 4751 0.673956 GTTCGGAGTCCCTTTGCTCC 60.674 60.000 2.80 0.00 45.78 4.70
4590 4754 4.285851 GAGTCCCTTTGCTCCACG 57.714 61.111 0.00 0.00 0.00 4.94
4591 4755 1.671742 GAGTCCCTTTGCTCCACGA 59.328 57.895 0.00 0.00 0.00 4.35
4592 4756 0.390472 GAGTCCCTTTGCTCCACGAG 60.390 60.000 0.00 0.00 0.00 4.18
4593 4757 1.376037 GTCCCTTTGCTCCACGAGG 60.376 63.158 0.00 0.00 0.00 4.63
4594 4758 2.747855 CCCTTTGCTCCACGAGGC 60.748 66.667 0.00 0.00 33.74 4.70
4595 4759 2.747855 CCTTTGCTCCACGAGGCC 60.748 66.667 0.00 0.00 33.74 5.19
4596 4760 3.121030 CTTTGCTCCACGAGGCCG 61.121 66.667 0.00 0.00 42.50 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.301274 TCCGATTGGGGTGAAACTTTTT 58.699 40.909 0.00 0.00 36.74 1.94
14 15 2.890945 CTCCGATTGGGGTGAAACTTTT 59.109 45.455 0.00 0.00 36.74 2.27
17 18 3.957288 CTCCGATTGGGGTGAAACT 57.043 52.632 0.00 0.00 36.74 2.66
24 25 0.756903 ATCCGTAACTCCGATTGGGG 59.243 55.000 0.00 0.00 43.71 4.96
171 174 0.912486 AGATGGGAGAAGGGTTTCCG 59.088 55.000 0.00 0.00 38.33 4.30
200 203 4.214332 CCCTTCGTTTTCTTCTTCCTTGAG 59.786 45.833 0.00 0.00 0.00 3.02
262 265 0.832626 TGATGATGATGGCCACGTCT 59.167 50.000 8.16 0.00 33.67 4.18
264 267 0.464373 GGTGATGATGATGGCCACGT 60.464 55.000 8.16 3.19 0.00 4.49
344 347 2.494870 GCGGGTAAGAGAGAGGTTACAA 59.505 50.000 0.00 0.00 31.80 2.41
558 561 9.793252 AACAATAGACAATTATCATGAACAAGC 57.207 29.630 0.00 0.00 0.00 4.01
606 609 7.739295 GTGTTCACACATGTATTACGATTTCT 58.261 34.615 0.00 0.00 45.75 2.52
713 716 7.781219 TGATCCTGTTATCAATGACATCCAATT 59.219 33.333 0.00 0.00 32.97 2.32
733 736 7.571071 ATCATTCTCCTAATGATGTGATCCT 57.429 36.000 11.39 0.00 43.52 3.24
832 836 8.256605 CGATCTCATGGTCTAAGGAAATGATAT 58.743 37.037 0.00 0.00 31.04 1.63
990 994 2.616376 CCTCTCCGACATACAGAGTGAG 59.384 54.545 0.00 0.00 33.10 3.51
997 1001 4.390264 CAGAGATACCTCTCCGACATACA 58.610 47.826 0.00 0.00 46.38 2.29
1233 1240 4.625028 CTTGCTCCACGATAATCTCATCA 58.375 43.478 0.00 0.00 0.00 3.07
1309 1316 5.964958 TCATGAACTTGTCAAAATCCTCC 57.035 39.130 0.00 0.00 40.50 4.30
1328 1335 2.978278 GGAGGGAGATGAGATGGTTCAT 59.022 50.000 0.00 0.00 40.40 2.57
1398 1405 4.825634 CAGGTTCACCAGCATAATCATCAT 59.174 41.667 0.00 0.00 38.89 2.45
1872 1879 0.037303 ACAGCTTGGATCACCACCAG 59.963 55.000 0.00 0.00 46.80 4.00
1951 1958 8.855110 TCTTTCAACTCCAAATTTACAGCATTA 58.145 29.630 0.00 0.00 0.00 1.90
2187 2206 8.405531 GCTGTAAGAAAATGCAGGTATAATCAA 58.594 33.333 0.00 0.00 34.07 2.57
2372 2402 7.360861 CGCATCAAGAAAACAACACTATAAGGA 60.361 37.037 0.00 0.00 0.00 3.36
2608 2639 6.344500 TGGACAAATTGCACAAGTACAAAAT 58.656 32.000 0.00 0.00 0.00 1.82
2610 2641 5.105554 ACTGGACAAATTGCACAAGTACAAA 60.106 36.000 0.00 0.00 0.00 2.83
2720 2751 0.037419 TGCGAACTAGTGCATGCAGA 60.037 50.000 23.41 11.54 35.90 4.26
2890 2921 1.314730 GTTTTCTTTCACCTCGGGCA 58.685 50.000 0.00 0.00 0.00 5.36
2920 2951 3.503891 CACGCATGAAAATGATTGCTCA 58.496 40.909 0.00 0.00 35.41 4.26
3128 3214 6.490040 AGGAGCATAAAAGCAAAGTAAACTGA 59.510 34.615 0.00 0.00 36.85 3.41
3157 3243 9.741647 GAGATTCTTATTAAAATGGAAGCCAAG 57.258 33.333 0.00 0.00 36.95 3.61
3158 3244 8.695456 GGAGATTCTTATTAAAATGGAAGCCAA 58.305 33.333 0.00 0.00 36.95 4.52
3202 3288 5.423931 TGGTCACAAGCTCCATACATAACTA 59.576 40.000 0.00 0.00 0.00 2.24
3207 3293 3.719268 TTGGTCACAAGCTCCATACAT 57.281 42.857 0.00 0.00 31.73 2.29
3216 3304 4.808558 TGATAAGCAAATTGGTCACAAGC 58.191 39.130 0.00 0.00 40.49 4.01
3217 3305 6.149973 TCTCTGATAAGCAAATTGGTCACAAG 59.850 38.462 0.00 0.00 40.49 3.16
3250 3338 7.924358 TTGCCCAGTTTTACTATAGGAGATA 57.076 36.000 4.43 0.00 0.00 1.98
3257 3345 6.069331 TGTTGGTTTGCCCAGTTTTACTATA 58.931 36.000 0.00 0.00 46.31 1.31
3333 3422 5.504337 CGAGTACATAGACTTCCAGCAGTAC 60.504 48.000 0.00 0.00 0.00 2.73
3385 3480 3.657398 TCAGAGTACATAGACCGGGAA 57.343 47.619 6.32 0.00 0.00 3.97
3464 3559 9.519191 TTGATTTGATAGGAATTTCTGACTGAA 57.481 29.630 0.00 0.00 0.00 3.02
3513 3608 9.160496 ACAAAATTGAAAACAAAACATCAGCTA 57.840 25.926 0.00 0.00 0.00 3.32
3515 3610 7.253387 GCACAAAATTGAAAACAAAACATCAGC 60.253 33.333 0.00 0.00 0.00 4.26
3633 3728 4.636249 ACAACACAAAAGGCTTGAAACAA 58.364 34.783 0.00 0.00 0.00 2.83
3786 3884 8.169268 CGGTTTTCATTACTGACAAGAGATAAC 58.831 37.037 0.00 0.00 0.00 1.89
3810 3908 0.243907 ACAAGATCCTGACGACACGG 59.756 55.000 0.00 0.00 0.00 4.94
3824 3922 6.312426 ACACAATTTTTCGAAATGCAACAAGA 59.688 30.769 12.12 0.00 0.00 3.02
3829 3927 5.726138 GCACACACAATTTTTCGAAATGCAA 60.726 36.000 12.12 3.57 0.00 4.08
3830 3928 4.260132 GCACACACAATTTTTCGAAATGCA 60.260 37.500 12.12 0.00 0.00 3.96
3838 3936 2.192624 AGCACGCACACACAATTTTTC 58.807 42.857 0.00 0.00 0.00 2.29
3843 3941 0.455410 AACAAGCACGCACACACAAT 59.545 45.000 0.00 0.00 0.00 2.71
3890 3988 1.344065 TCCTTCTTACTGGTTCGCCA 58.656 50.000 0.00 0.00 46.87 5.69
3969 4067 4.260907 CCATGCCTAGTTTGATGATGTTCG 60.261 45.833 0.00 0.00 0.00 3.95
4040 4185 3.341823 CATGCTCTGTTGCTCTAGGTTT 58.658 45.455 0.00 0.00 0.00 3.27
4060 4205 4.382040 GCAGAGCAGTGATAGAGTTAACCA 60.382 45.833 0.88 0.00 0.00 3.67
4062 4207 4.116238 GGCAGAGCAGTGATAGAGTTAAC 58.884 47.826 0.00 0.00 0.00 2.01
4063 4208 4.026744 AGGCAGAGCAGTGATAGAGTTAA 58.973 43.478 0.00 0.00 0.00 2.01
4102 4266 3.067320 GGCCATCTTATTCCTCAGTTTGC 59.933 47.826 0.00 0.00 0.00 3.68
4124 4288 1.380380 GAACTGCCAGGGGATTGGG 60.380 63.158 0.00 0.00 38.72 4.12
4126 4290 1.383799 TGGAACTGCCAGGGGATTG 59.616 57.895 0.00 0.00 43.33 2.67
4127 4291 3.936408 TGGAACTGCCAGGGGATT 58.064 55.556 0.00 0.00 43.33 3.01
4135 4299 5.003804 TGAATCTTCTAAGTTGGAACTGCC 58.996 41.667 0.00 0.00 39.66 4.85
4136 4300 6.749923 ATGAATCTTCTAAGTTGGAACTGC 57.250 37.500 0.00 0.00 39.66 4.40
4141 4305 6.613271 AGGAGCTATGAATCTTCTAAGTTGGA 59.387 38.462 0.00 0.00 0.00 3.53
4143 4307 7.495901 TGAGGAGCTATGAATCTTCTAAGTTG 58.504 38.462 0.00 0.00 0.00 3.16
4144 4308 7.667575 TGAGGAGCTATGAATCTTCTAAGTT 57.332 36.000 0.00 0.00 0.00 2.66
4145 4309 7.256261 CCATGAGGAGCTATGAATCTTCTAAGT 60.256 40.741 0.00 0.00 36.89 2.24
4146 4310 7.039152 TCCATGAGGAGCTATGAATCTTCTAAG 60.039 40.741 0.00 0.00 39.61 2.18
4147 4311 6.784473 TCCATGAGGAGCTATGAATCTTCTAA 59.216 38.462 0.00 0.00 39.61 2.10
4148 4312 6.318112 TCCATGAGGAGCTATGAATCTTCTA 58.682 40.000 0.00 0.00 39.61 2.10
4149 4313 5.153675 TCCATGAGGAGCTATGAATCTTCT 58.846 41.667 0.00 0.00 39.61 2.85
4150 4314 5.480642 TCCATGAGGAGCTATGAATCTTC 57.519 43.478 0.00 0.00 39.61 2.87
4163 4327 1.591703 GTGTGACGCTCCATGAGGA 59.408 57.895 0.00 0.00 43.21 3.71
4164 4328 1.807165 CGTGTGACGCTCCATGAGG 60.807 63.158 0.00 0.00 33.65 3.86
4165 4329 3.772636 CGTGTGACGCTCCATGAG 58.227 61.111 0.00 0.00 33.65 2.90
4175 4339 3.188786 GATGGAGCCGCGTGTGAC 61.189 66.667 4.92 0.00 0.00 3.67
4176 4340 3.647649 CTGATGGAGCCGCGTGTGA 62.648 63.158 4.92 0.00 0.00 3.58
4177 4341 3.190849 CTGATGGAGCCGCGTGTG 61.191 66.667 4.92 0.00 0.00 3.82
4178 4342 4.457496 CCTGATGGAGCCGCGTGT 62.457 66.667 4.92 0.00 34.57 4.49
4179 4343 2.572095 TAACCTGATGGAGCCGCGTG 62.572 60.000 4.92 0.00 37.04 5.34
4180 4344 2.355986 TAACCTGATGGAGCCGCGT 61.356 57.895 4.92 0.00 37.04 6.01
4181 4345 1.883084 GTAACCTGATGGAGCCGCG 60.883 63.158 0.00 0.00 37.04 6.46
4182 4346 1.523938 GGTAACCTGATGGAGCCGC 60.524 63.158 0.00 0.00 37.04 6.53
4183 4347 0.179073 CTGGTAACCTGATGGAGCCG 60.179 60.000 0.00 0.00 37.04 5.52
4184 4348 0.464554 GCTGGTAACCTGATGGAGCC 60.465 60.000 0.00 0.00 37.04 4.70
4185 4349 0.253044 TGCTGGTAACCTGATGGAGC 59.747 55.000 0.00 0.00 37.04 4.70
4186 4350 1.745141 GCTGCTGGTAACCTGATGGAG 60.745 57.143 0.00 0.00 37.04 3.86
4187 4351 0.253044 GCTGCTGGTAACCTGATGGA 59.747 55.000 0.00 0.00 37.04 3.41
4188 4352 0.749454 GGCTGCTGGTAACCTGATGG 60.749 60.000 0.00 0.00 39.83 3.51
4189 4353 0.749454 GGGCTGCTGGTAACCTGATG 60.749 60.000 0.00 0.00 0.00 3.07
4190 4354 1.609783 GGGCTGCTGGTAACCTGAT 59.390 57.895 0.00 0.00 0.00 2.90
4191 4355 2.602676 GGGGCTGCTGGTAACCTGA 61.603 63.158 0.00 0.00 0.00 3.86
4192 4356 2.044946 GGGGCTGCTGGTAACCTG 60.045 66.667 0.00 0.00 0.00 4.00
4193 4357 2.531685 TGGGGCTGCTGGTAACCT 60.532 61.111 0.00 0.00 0.00 3.50
4194 4358 2.361230 GTGGGGCTGCTGGTAACC 60.361 66.667 0.00 0.00 0.00 2.85
4195 4359 2.746277 CGTGGGGCTGCTGGTAAC 60.746 66.667 0.00 0.00 0.00 2.50
4196 4360 4.715523 GCGTGGGGCTGCTGGTAA 62.716 66.667 0.00 0.00 39.11 2.85
4205 4369 1.376609 CTGTTATGGAAGCGTGGGGC 61.377 60.000 0.00 0.00 44.05 5.80
4206 4370 0.035439 ACTGTTATGGAAGCGTGGGG 60.035 55.000 0.00 0.00 0.00 4.96
4207 4371 1.737793 GAACTGTTATGGAAGCGTGGG 59.262 52.381 0.00 0.00 0.00 4.61
4208 4372 1.737793 GGAACTGTTATGGAAGCGTGG 59.262 52.381 0.00 0.00 0.00 4.94
4209 4373 2.699954 AGGAACTGTTATGGAAGCGTG 58.300 47.619 0.00 0.00 37.18 5.34
4210 4374 3.008049 AGAAGGAACTGTTATGGAAGCGT 59.992 43.478 0.00 0.00 40.86 5.07
4211 4375 3.372206 CAGAAGGAACTGTTATGGAAGCG 59.628 47.826 0.00 0.00 40.86 4.68
4212 4376 3.127721 GCAGAAGGAACTGTTATGGAAGC 59.872 47.826 0.00 0.00 40.86 3.86
4213 4377 3.691609 GGCAGAAGGAACTGTTATGGAAG 59.308 47.826 0.00 0.00 40.86 3.46
4214 4378 3.330701 AGGCAGAAGGAACTGTTATGGAA 59.669 43.478 0.00 0.00 40.86 3.53
4215 4379 2.912956 AGGCAGAAGGAACTGTTATGGA 59.087 45.455 0.00 0.00 40.86 3.41
4216 4380 3.356529 AGGCAGAAGGAACTGTTATGG 57.643 47.619 0.00 0.00 40.86 2.74
4217 4381 4.154918 GTGAAGGCAGAAGGAACTGTTATG 59.845 45.833 0.00 0.00 40.86 1.90
4218 4382 4.327680 GTGAAGGCAGAAGGAACTGTTAT 58.672 43.478 0.00 0.00 40.86 1.89
4219 4383 3.496160 GGTGAAGGCAGAAGGAACTGTTA 60.496 47.826 0.00 0.00 40.86 2.41
4220 4384 2.576615 GTGAAGGCAGAAGGAACTGTT 58.423 47.619 0.00 0.00 40.86 3.16
4221 4385 1.202818 GGTGAAGGCAGAAGGAACTGT 60.203 52.381 0.00 0.00 40.86 3.55
4222 4386 1.072965 AGGTGAAGGCAGAAGGAACTG 59.927 52.381 0.00 0.00 40.86 3.16
4224 4388 1.611936 GGAGGTGAAGGCAGAAGGAAC 60.612 57.143 0.00 0.00 0.00 3.62
4225 4389 0.693049 GGAGGTGAAGGCAGAAGGAA 59.307 55.000 0.00 0.00 0.00 3.36
4226 4390 0.178891 AGGAGGTGAAGGCAGAAGGA 60.179 55.000 0.00 0.00 0.00 3.36
4227 4391 0.695347 AAGGAGGTGAAGGCAGAAGG 59.305 55.000 0.00 0.00 0.00 3.46
4228 4392 2.679349 GCTAAGGAGGTGAAGGCAGAAG 60.679 54.545 0.00 0.00 0.00 2.85
4229 4393 1.279271 GCTAAGGAGGTGAAGGCAGAA 59.721 52.381 0.00 0.00 0.00 3.02
4230 4394 0.905357 GCTAAGGAGGTGAAGGCAGA 59.095 55.000 0.00 0.00 0.00 4.26
4231 4395 0.615331 TGCTAAGGAGGTGAAGGCAG 59.385 55.000 0.00 0.00 0.00 4.85
4232 4396 1.003580 CTTGCTAAGGAGGTGAAGGCA 59.996 52.381 0.00 0.00 0.00 4.75
4233 4397 1.003696 ACTTGCTAAGGAGGTGAAGGC 59.996 52.381 0.00 0.00 0.00 4.35
4234 4398 2.039084 ACACTTGCTAAGGAGGTGAAGG 59.961 50.000 7.98 0.00 0.00 3.46
4235 4399 3.409026 ACACTTGCTAAGGAGGTGAAG 57.591 47.619 7.98 0.00 0.00 3.02
4236 4400 5.012664 TGAATACACTTGCTAAGGAGGTGAA 59.987 40.000 7.98 0.00 0.00 3.18
4237 4401 4.530553 TGAATACACTTGCTAAGGAGGTGA 59.469 41.667 7.98 0.00 0.00 4.02
4238 4402 4.832248 TGAATACACTTGCTAAGGAGGTG 58.168 43.478 0.00 0.00 0.00 4.00
4239 4403 4.532521 ACTGAATACACTTGCTAAGGAGGT 59.467 41.667 0.00 0.00 0.00 3.85
4240 4404 5.091261 ACTGAATACACTTGCTAAGGAGG 57.909 43.478 0.00 0.00 0.00 4.30
4241 4405 5.582665 GGAACTGAATACACTTGCTAAGGAG 59.417 44.000 0.00 0.00 0.00 3.69
4242 4406 5.012664 TGGAACTGAATACACTTGCTAAGGA 59.987 40.000 0.00 0.00 0.00 3.36
4243 4407 5.122396 GTGGAACTGAATACACTTGCTAAGG 59.878 44.000 0.00 0.00 0.00 2.69
4244 4408 5.700832 TGTGGAACTGAATACACTTGCTAAG 59.299 40.000 0.00 0.00 38.04 2.18
4245 4409 5.616270 TGTGGAACTGAATACACTTGCTAA 58.384 37.500 0.00 0.00 38.04 3.09
4246 4410 5.222079 TGTGGAACTGAATACACTTGCTA 57.778 39.130 0.00 0.00 38.04 3.49
4247 4411 4.085357 TGTGGAACTGAATACACTTGCT 57.915 40.909 0.00 0.00 38.04 3.91
4248 4412 4.275936 ACTTGTGGAACTGAATACACTTGC 59.724 41.667 0.00 0.00 38.04 4.01
4249 4413 5.049405 GGACTTGTGGAACTGAATACACTTG 60.049 44.000 0.00 0.00 38.04 3.16
4250 4414 5.063880 GGACTTGTGGAACTGAATACACTT 58.936 41.667 0.00 0.00 38.04 3.16
4251 4415 4.102524 TGGACTTGTGGAACTGAATACACT 59.897 41.667 0.00 0.00 38.04 3.55
4252 4416 4.385825 TGGACTTGTGGAACTGAATACAC 58.614 43.478 0.00 0.00 38.04 2.90
4253 4417 4.698201 TGGACTTGTGGAACTGAATACA 57.302 40.909 0.00 0.00 38.04 2.29
4254 4418 7.012421 GGATATTGGACTTGTGGAACTGAATAC 59.988 40.741 0.00 0.00 38.04 1.89
4255 4419 7.054124 GGATATTGGACTTGTGGAACTGAATA 58.946 38.462 0.00 0.00 38.04 1.75
4256 4420 5.888161 GGATATTGGACTTGTGGAACTGAAT 59.112 40.000 0.00 0.00 38.04 2.57
4257 4421 5.222027 TGGATATTGGACTTGTGGAACTGAA 60.222 40.000 0.00 0.00 38.04 3.02
4258 4422 4.288366 TGGATATTGGACTTGTGGAACTGA 59.712 41.667 0.00 0.00 38.04 3.41
4259 4423 4.396166 GTGGATATTGGACTTGTGGAACTG 59.604 45.833 0.00 0.00 38.04 3.16
4260 4424 4.289672 AGTGGATATTGGACTTGTGGAACT 59.710 41.667 0.00 0.00 38.04 3.01
4261 4425 4.589908 AGTGGATATTGGACTTGTGGAAC 58.410 43.478 0.00 0.00 37.35 3.62
4262 4426 4.927267 AGTGGATATTGGACTTGTGGAA 57.073 40.909 0.00 0.00 0.00 3.53
4263 4427 4.927267 AAGTGGATATTGGACTTGTGGA 57.073 40.909 0.00 0.00 0.00 4.02
4264 4428 4.380867 GCAAAGTGGATATTGGACTTGTGG 60.381 45.833 0.00 0.00 30.33 4.17
4265 4429 4.380867 GGCAAAGTGGATATTGGACTTGTG 60.381 45.833 0.00 0.00 30.33 3.33
4266 4430 3.763897 GGCAAAGTGGATATTGGACTTGT 59.236 43.478 0.00 0.00 30.33 3.16
4267 4431 4.019174 AGGCAAAGTGGATATTGGACTTG 58.981 43.478 0.00 0.00 30.33 3.16
4268 4432 4.018050 AGAGGCAAAGTGGATATTGGACTT 60.018 41.667 0.00 0.00 0.00 3.01
4269 4433 3.525199 AGAGGCAAAGTGGATATTGGACT 59.475 43.478 0.00 0.00 0.00 3.85
4270 4434 3.879892 GAGAGGCAAAGTGGATATTGGAC 59.120 47.826 0.00 0.00 0.00 4.02
4271 4435 3.782523 AGAGAGGCAAAGTGGATATTGGA 59.217 43.478 0.00 0.00 0.00 3.53
4272 4436 4.162040 AGAGAGGCAAAGTGGATATTGG 57.838 45.455 0.00 0.00 0.00 3.16
4273 4437 5.296283 CAGAAGAGAGGCAAAGTGGATATTG 59.704 44.000 0.00 0.00 0.00 1.90
4274 4438 5.190528 TCAGAAGAGAGGCAAAGTGGATATT 59.809 40.000 0.00 0.00 0.00 1.28
4275 4439 4.718774 TCAGAAGAGAGGCAAAGTGGATAT 59.281 41.667 0.00 0.00 0.00 1.63
4276 4440 4.096681 TCAGAAGAGAGGCAAAGTGGATA 58.903 43.478 0.00 0.00 0.00 2.59
4277 4441 2.909006 TCAGAAGAGAGGCAAAGTGGAT 59.091 45.455 0.00 0.00 0.00 3.41
4278 4442 2.329267 TCAGAAGAGAGGCAAAGTGGA 58.671 47.619 0.00 0.00 0.00 4.02
4279 4443 2.847327 TCAGAAGAGAGGCAAAGTGG 57.153 50.000 0.00 0.00 0.00 4.00
4280 4444 3.269178 GGATCAGAAGAGAGGCAAAGTG 58.731 50.000 0.00 0.00 0.00 3.16
4281 4445 2.909006 TGGATCAGAAGAGAGGCAAAGT 59.091 45.455 0.00 0.00 0.00 2.66
4282 4446 3.055240 AGTGGATCAGAAGAGAGGCAAAG 60.055 47.826 0.00 0.00 0.00 2.77
4283 4447 2.909006 AGTGGATCAGAAGAGAGGCAAA 59.091 45.455 0.00 0.00 0.00 3.68
4284 4448 2.235650 CAGTGGATCAGAAGAGAGGCAA 59.764 50.000 0.00 0.00 0.00 4.52
4285 4449 1.829849 CAGTGGATCAGAAGAGAGGCA 59.170 52.381 0.00 0.00 0.00 4.75
4286 4450 2.106566 TCAGTGGATCAGAAGAGAGGC 58.893 52.381 0.00 0.00 0.00 4.70
4287 4451 3.364549 AGTCAGTGGATCAGAAGAGAGG 58.635 50.000 0.00 0.00 0.00 3.69
4288 4452 4.272489 AGAGTCAGTGGATCAGAAGAGAG 58.728 47.826 0.00 0.00 0.00 3.20
4289 4453 4.314522 AGAGTCAGTGGATCAGAAGAGA 57.685 45.455 0.00 0.00 0.00 3.10
4290 4454 4.381825 CCAAGAGTCAGTGGATCAGAAGAG 60.382 50.000 7.00 0.00 37.03 2.85
4291 4455 3.513119 CCAAGAGTCAGTGGATCAGAAGA 59.487 47.826 7.00 0.00 37.03 2.87
4292 4456 3.369261 CCCAAGAGTCAGTGGATCAGAAG 60.369 52.174 13.16 0.00 37.03 2.85
4293 4457 2.568956 CCCAAGAGTCAGTGGATCAGAA 59.431 50.000 13.16 0.00 37.03 3.02
4294 4458 2.182827 CCCAAGAGTCAGTGGATCAGA 58.817 52.381 13.16 0.00 37.03 3.27
4295 4459 1.406614 GCCCAAGAGTCAGTGGATCAG 60.407 57.143 13.16 0.00 37.03 2.90
4296 4460 0.615331 GCCCAAGAGTCAGTGGATCA 59.385 55.000 13.16 0.00 37.03 2.92
4297 4461 0.615331 TGCCCAAGAGTCAGTGGATC 59.385 55.000 13.16 6.38 37.03 3.36
4298 4462 1.064906 CATGCCCAAGAGTCAGTGGAT 60.065 52.381 13.16 0.00 37.03 3.41
4299 4463 0.325933 CATGCCCAAGAGTCAGTGGA 59.674 55.000 13.16 0.00 37.03 4.02
4300 4464 1.310933 GCATGCCCAAGAGTCAGTGG 61.311 60.000 6.36 6.00 34.44 4.00
4301 4465 0.322277 AGCATGCCCAAGAGTCAGTG 60.322 55.000 15.66 0.00 0.00 3.66
4302 4466 0.035630 GAGCATGCCCAAGAGTCAGT 60.036 55.000 15.66 0.00 0.00 3.41
4303 4467 1.088340 CGAGCATGCCCAAGAGTCAG 61.088 60.000 15.66 0.00 0.00 3.51
4304 4468 1.078918 CGAGCATGCCCAAGAGTCA 60.079 57.895 15.66 0.00 0.00 3.41
4305 4469 1.817099 CCGAGCATGCCCAAGAGTC 60.817 63.158 15.66 2.07 0.00 3.36
4306 4470 2.270205 CCGAGCATGCCCAAGAGT 59.730 61.111 15.66 0.00 0.00 3.24
4307 4471 1.817099 GTCCGAGCATGCCCAAGAG 60.817 63.158 15.66 0.00 0.00 2.85
4308 4472 2.123248 TTGTCCGAGCATGCCCAAGA 62.123 55.000 15.66 3.45 0.00 3.02
4309 4473 1.675310 TTGTCCGAGCATGCCCAAG 60.675 57.895 15.66 3.08 0.00 3.61
4310 4474 1.971167 GTTGTCCGAGCATGCCCAA 60.971 57.895 15.66 7.13 0.00 4.12
4311 4475 2.359850 GTTGTCCGAGCATGCCCA 60.360 61.111 15.66 0.54 0.00 5.36
4312 4476 1.750399 ATGTTGTCCGAGCATGCCC 60.750 57.895 15.66 0.00 0.00 5.36
4313 4477 1.430632 CATGTTGTCCGAGCATGCC 59.569 57.895 15.66 4.99 34.47 4.40
4314 4478 1.308069 ACCATGTTGTCCGAGCATGC 61.308 55.000 10.51 10.51 38.79 4.06
4315 4479 1.665679 GTACCATGTTGTCCGAGCATG 59.334 52.381 0.00 0.00 39.54 4.06
4316 4480 1.277842 TGTACCATGTTGTCCGAGCAT 59.722 47.619 0.00 0.00 0.00 3.79
4317 4481 0.682292 TGTACCATGTTGTCCGAGCA 59.318 50.000 0.00 0.00 0.00 4.26
4318 4482 1.359848 CTGTACCATGTTGTCCGAGC 58.640 55.000 0.00 0.00 0.00 5.03
4319 4483 1.337728 TGCTGTACCATGTTGTCCGAG 60.338 52.381 0.00 0.00 0.00 4.63
4320 4484 0.682292 TGCTGTACCATGTTGTCCGA 59.318 50.000 0.00 0.00 0.00 4.55
4321 4485 0.796312 GTGCTGTACCATGTTGTCCG 59.204 55.000 0.00 0.00 0.00 4.79
4338 4502 3.449018 AGTCTACCTACATGCAGAAGGTG 59.551 47.826 21.63 13.94 43.47 4.00
4339 4503 3.449018 CAGTCTACCTACATGCAGAAGGT 59.551 47.826 18.30 18.30 45.53 3.50
4340 4504 3.701542 TCAGTCTACCTACATGCAGAAGG 59.298 47.826 9.60 9.60 36.42 3.46
4341 4505 4.991153 TCAGTCTACCTACATGCAGAAG 57.009 45.455 0.00 0.00 0.00 2.85
4342 4506 4.442052 GCATCAGTCTACCTACATGCAGAA 60.442 45.833 0.00 0.00 38.05 3.02
4343 4507 3.068732 GCATCAGTCTACCTACATGCAGA 59.931 47.826 0.00 0.00 38.05 4.26
4344 4508 3.388308 GCATCAGTCTACCTACATGCAG 58.612 50.000 0.00 0.00 38.05 4.41
4345 4509 2.223805 CGCATCAGTCTACCTACATGCA 60.224 50.000 0.00 0.00 38.04 3.96
4346 4510 2.034685 TCGCATCAGTCTACCTACATGC 59.965 50.000 0.00 0.00 36.18 4.06
4347 4511 3.066760 TGTCGCATCAGTCTACCTACATG 59.933 47.826 0.00 0.00 0.00 3.21
4348 4512 3.066900 GTGTCGCATCAGTCTACCTACAT 59.933 47.826 0.00 0.00 0.00 2.29
4349 4513 2.422479 GTGTCGCATCAGTCTACCTACA 59.578 50.000 0.00 0.00 0.00 2.74
4350 4514 2.422479 TGTGTCGCATCAGTCTACCTAC 59.578 50.000 0.00 0.00 0.00 3.18
4351 4515 2.718563 TGTGTCGCATCAGTCTACCTA 58.281 47.619 0.00 0.00 0.00 3.08
4352 4516 1.545841 TGTGTCGCATCAGTCTACCT 58.454 50.000 0.00 0.00 0.00 3.08
4353 4517 2.196749 CATGTGTCGCATCAGTCTACC 58.803 52.381 0.00 0.00 35.19 3.18
4354 4518 1.590238 GCATGTGTCGCATCAGTCTAC 59.410 52.381 0.00 0.00 35.19 2.59
4355 4519 1.478105 AGCATGTGTCGCATCAGTCTA 59.522 47.619 0.00 0.00 35.19 2.59
4356 4520 0.248565 AGCATGTGTCGCATCAGTCT 59.751 50.000 0.00 0.00 35.19 3.24
4357 4521 1.081892 AAGCATGTGTCGCATCAGTC 58.918 50.000 0.00 0.00 35.19 3.51
4358 4522 2.385013 TAAGCATGTGTCGCATCAGT 57.615 45.000 0.00 0.00 35.19 3.41
4359 4523 4.509230 ACTTATAAGCATGTGTCGCATCAG 59.491 41.667 12.54 0.00 35.19 2.90
4360 4524 4.441792 ACTTATAAGCATGTGTCGCATCA 58.558 39.130 12.54 0.00 35.19 3.07
4361 4525 4.747108 AGACTTATAAGCATGTGTCGCATC 59.253 41.667 12.54 0.00 35.19 3.91
4362 4526 4.509230 CAGACTTATAAGCATGTGTCGCAT 59.491 41.667 12.54 0.00 38.60 4.73
4363 4527 3.865164 CAGACTTATAAGCATGTGTCGCA 59.135 43.478 12.54 0.00 0.00 5.10
4364 4528 4.112634 TCAGACTTATAAGCATGTGTCGC 58.887 43.478 12.54 0.00 0.00 5.19
4365 4529 6.212235 AGATCAGACTTATAAGCATGTGTCG 58.788 40.000 12.54 0.58 0.00 4.35
4366 4530 7.925483 AGAAGATCAGACTTATAAGCATGTGTC 59.075 37.037 12.54 12.47 0.00 3.67
4367 4531 7.790027 AGAAGATCAGACTTATAAGCATGTGT 58.210 34.615 12.54 5.45 0.00 3.72
4368 4532 8.143193 AGAGAAGATCAGACTTATAAGCATGTG 58.857 37.037 12.54 3.43 0.00 3.21
4402 4566 4.480166 AGGAAAGCCTAAGAATGGGAAGAT 59.520 41.667 0.00 0.00 44.74 2.40
4403 4567 3.852578 AGGAAAGCCTAAGAATGGGAAGA 59.147 43.478 0.00 0.00 44.74 2.87
4446 4610 5.208890 TCTATGGCACCTGTAATCAGTAGT 58.791 41.667 0.00 0.00 39.82 2.73
4463 4627 4.496341 CGCAGGTTAGTGCAAAATCTATGG 60.496 45.833 0.00 0.00 44.21 2.74
4475 4639 1.792949 GTTCACAGTCGCAGGTTAGTG 59.207 52.381 0.00 0.00 0.00 2.74
4499 4663 2.876091 TGAGCAGTACTTCATACGTGC 58.124 47.619 0.00 0.00 38.97 5.34
4504 4668 5.450550 CGGTCAAGATGAGCAGTACTTCATA 60.451 44.000 9.55 0.00 44.51 2.15
4565 4729 0.955919 GCAAAGGGACTCCGAACAGG 60.956 60.000 0.00 0.00 38.49 4.00
4566 4730 0.035458 AGCAAAGGGACTCCGAACAG 59.965 55.000 0.00 0.00 38.49 3.16
4567 4731 0.034896 GAGCAAAGGGACTCCGAACA 59.965 55.000 0.00 0.00 38.49 3.18
4568 4732 0.673956 GGAGCAAAGGGACTCCGAAC 60.674 60.000 0.00 0.00 42.92 3.95
4569 4733 1.677552 GGAGCAAAGGGACTCCGAA 59.322 57.895 0.00 0.00 42.92 4.30
4570 4734 3.388841 GGAGCAAAGGGACTCCGA 58.611 61.111 0.00 0.00 42.92 4.55
4573 4737 0.390472 CTCGTGGAGCAAAGGGACTC 60.390 60.000 0.00 0.00 38.49 3.36
4574 4738 1.831652 CCTCGTGGAGCAAAGGGACT 61.832 60.000 0.00 0.00 35.79 3.85
4575 4739 1.376037 CCTCGTGGAGCAAAGGGAC 60.376 63.158 0.00 0.00 34.57 4.46
4576 4740 3.068881 CCTCGTGGAGCAAAGGGA 58.931 61.111 0.00 0.00 34.57 4.20
4577 4741 2.747855 GCCTCGTGGAGCAAAGGG 60.748 66.667 7.92 0.00 34.57 3.95
4578 4742 2.747855 GGCCTCGTGGAGCAAAGG 60.748 66.667 7.92 0.00 34.57 3.11
4579 4743 3.121030 CGGCCTCGTGGAGCAAAG 61.121 66.667 7.92 0.00 34.57 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.