Multiple sequence alignment - TraesCS6D01G102900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G102900 chr6D 100.000 3530 0 0 1 3530 66257426 66253897 0.000000e+00 6519.0
1 TraesCS6D01G102900 chr6D 97.041 1656 39 4 771 2425 66621705 66620059 0.000000e+00 2778.0
2 TraesCS6D01G102900 chr6D 95.758 1650 43 5 771 2419 66969339 66967716 0.000000e+00 2634.0
3 TraesCS6D01G102900 chr6D 94.922 1477 59 10 959 2420 66128801 66127326 0.000000e+00 2298.0
4 TraesCS6D01G102900 chr6D 96.229 769 23 3 2763 3530 66967623 66966860 0.000000e+00 1254.0
5 TraesCS6D01G102900 chr6D 95.730 562 15 3 2763 3320 66619967 66619411 0.000000e+00 896.0
6 TraesCS6D01G102900 chr6D 95.745 564 9 3 1 549 66622261 66621698 0.000000e+00 894.0
7 TraesCS6D01G102900 chr6D 92.734 578 12 9 1 549 66969908 66969332 0.000000e+00 808.0
8 TraesCS6D01G102900 chr6D 96.903 226 6 1 3305 3530 66619019 66618795 9.250000e-101 377.0
9 TraesCS6D01G102900 chr6D 98.113 159 1 1 2445 2601 66620124 66619966 3.470000e-70 276.0
10 TraesCS6D01G102900 chr6D 95.541 157 5 1 2445 2601 66967776 66967622 2.100000e-62 250.0
11 TraesCS6D01G102900 chr6D 90.361 83 8 0 317 399 78778269 78778351 3.730000e-20 110.0
12 TraesCS6D01G102900 chr6D 77.439 164 22 11 2445 2601 66127397 66127242 2.260000e-12 84.2
13 TraesCS6D01G102900 chr6B 96.794 1591 48 3 771 2360 141200482 141198894 0.000000e+00 2652.0
14 TraesCS6D01G102900 chr6B 96.732 1591 49 3 771 2360 141258083 141256495 0.000000e+00 2647.0
15 TraesCS6D01G102900 chr6B 95.844 770 28 3 2763 3530 141198757 141197990 0.000000e+00 1242.0
16 TraesCS6D01G102900 chr6B 95.844 770 28 3 2763 3530 141256358 141255591 0.000000e+00 1242.0
17 TraesCS6D01G102900 chr6B 92.381 315 13 5 1 304 141201107 141200793 4.180000e-119 438.0
18 TraesCS6D01G102900 chr6B 92.063 315 14 5 1 304 141258708 141258394 1.950000e-117 433.0
19 TraesCS6D01G102900 chr6B 92.609 230 6 5 330 549 141200703 141200475 1.580000e-83 320.0
20 TraesCS6D01G102900 chr6B 92.609 230 6 5 330 549 141258304 141258076 1.580000e-83 320.0
21 TraesCS6D01G102900 chr6B 91.195 159 6 5 396 549 625949673 625949828 3.570000e-50 209.0
22 TraesCS6D01G102900 chr6B 90.446 157 9 4 396 549 22428317 22428164 5.980000e-48 202.0
23 TraesCS6D01G102900 chr6B 91.608 143 6 3 2461 2601 141198894 141198756 3.600000e-45 193.0
24 TraesCS6D01G102900 chr6B 91.608 143 6 3 2461 2601 141256495 141256357 3.600000e-45 193.0
25 TraesCS6D01G102900 chr6B 74.324 296 45 16 2876 3170 319832241 319832506 2.900000e-16 97.1
26 TraesCS6D01G102900 chr5D 98.261 230 3 1 546 775 495303651 495303423 5.490000e-108 401.0
27 TraesCS6D01G102900 chr5D 91.566 83 7 0 318 400 108718287 108718205 8.010000e-22 115.0
28 TraesCS6D01G102900 chr2D 97.333 225 6 0 551 775 115598360 115598584 1.990000e-102 383.0
29 TraesCS6D01G102900 chr2D 95.455 176 8 0 2592 2767 161907024 161906849 7.460000e-72 281.0
30 TraesCS6D01G102900 chr2D 80.693 202 36 3 3061 3261 475769858 475770057 1.700000e-33 154.0
31 TraesCS6D01G102900 chr3D 96.889 225 7 0 551 775 529114197 529114421 9.250000e-101 377.0
32 TraesCS6D01G102900 chr3D 95.429 175 6 1 2600 2772 355892353 355892527 9.650000e-71 278.0
33 TraesCS6D01G102900 chr3D 80.660 212 35 6 3308 3515 481890277 481890486 3.650000e-35 159.0
34 TraesCS6D01G102900 chr5A 95.045 222 11 0 554 775 423041232 423041011 2.020000e-92 350.0
35 TraesCS6D01G102900 chr5A 77.812 320 43 22 1 304 602652304 602651997 4.680000e-39 172.0
36 TraesCS6D01G102900 chr5A 78.333 120 23 2 2890 3006 54652194 54652075 1.360000e-09 75.0
37 TraesCS6D01G102900 chr1A 92.920 226 16 0 548 773 373338334 373338109 2.630000e-86 329.0
38 TraesCS6D01G102900 chr1A 92.377 223 16 1 552 773 382738347 382738125 2.050000e-82 316.0
39 TraesCS6D01G102900 chr1A 90.446 157 9 4 396 549 554453443 554453290 5.980000e-48 202.0
40 TraesCS6D01G102900 chr1A 79.918 244 43 5 69 308 591975240 591975481 1.300000e-39 174.0
41 TraesCS6D01G102900 chr2B 90.583 223 21 0 551 773 549030370 549030592 2.660000e-76 296.0
42 TraesCS6D01G102900 chr2B 95.402 174 7 1 2595 2768 28427168 28427340 3.470000e-70 276.0
43 TraesCS6D01G102900 chr2B 90.361 83 8 0 317 399 609291175 609291257 3.730000e-20 110.0
44 TraesCS6D01G102900 chr2B 95.238 42 2 0 771 812 683740887 683740928 2.270000e-07 67.6
45 TraesCS6D01G102900 chr4B 97.093 172 5 0 2594 2765 71600618 71600789 1.240000e-74 291.0
46 TraesCS6D01G102900 chr4B 87.907 215 22 4 3318 3530 404113816 404113604 2.100000e-62 250.0
47 TraesCS6D01G102900 chr4D 97.041 169 5 0 2599 2767 404108577 404108745 5.770000e-73 285.0
48 TraesCS6D01G102900 chrUn 90.995 211 18 1 3318 3527 264418039 264418249 2.070000e-72 283.0
49 TraesCS6D01G102900 chrUn 90.995 211 18 1 3318 3527 295580378 295580588 2.070000e-72 283.0
50 TraesCS6D01G102900 chrUn 90.521 211 19 1 3318 3527 71439347 71439557 9.650000e-71 278.0
51 TraesCS6D01G102900 chrUn 90.446 157 9 4 396 549 423004239 423004392 5.980000e-48 202.0
52 TraesCS6D01G102900 chr3A 94.565 184 6 3 2584 2765 585605818 585605637 7.460000e-72 281.0
53 TraesCS6D01G102900 chr1D 95.480 177 6 2 2599 2773 238940381 238940205 7.460000e-72 281.0
54 TraesCS6D01G102900 chr1D 86.111 180 20 3 552 729 454295824 454295648 4.650000e-44 189.0
55 TraesCS6D01G102900 chr1D 79.918 244 44 4 69 309 493720064 493720305 1.300000e-39 174.0
56 TraesCS6D01G102900 chr7D 95.906 171 7 0 2595 2765 50710412 50710242 9.650000e-71 278.0
57 TraesCS6D01G102900 chr7D 78.743 334 60 11 2874 3202 63618388 63618715 2.760000e-51 213.0
58 TraesCS6D01G102900 chr4A 94.220 173 8 2 2600 2771 669671485 669671314 2.700000e-66 263.0
59 TraesCS6D01G102900 chr2A 80.063 316 50 9 1 304 603080556 603080242 4.590000e-54 222.0
60 TraesCS6D01G102900 chr2A 88.690 168 19 0 550 717 166250614 166250781 4.620000e-49 206.0
61 TraesCS6D01G102900 chr2A 75.124 402 81 13 2876 3273 427581902 427582288 1.680000e-38 171.0
62 TraesCS6D01G102900 chr2A 90.588 85 7 1 318 401 667686202 667686118 1.040000e-20 111.0
63 TraesCS6D01G102900 chr2A 72.196 428 77 22 2902 3322 1662601 1662209 3.750000e-15 93.5
64 TraesCS6D01G102900 chr7B 90.446 157 9 4 396 549 662742728 662742575 5.980000e-48 202.0
65 TraesCS6D01G102900 chr6A 81.933 238 29 12 69 300 108672603 108672374 4.650000e-44 189.0
66 TraesCS6D01G102900 chr6A 100.000 28 0 0 2149 2176 557555290 557555317 6.000000e-03 52.8
67 TraesCS6D01G102900 chr7A 92.771 83 6 0 317 399 438992142 438992224 1.720000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G102900 chr6D 66253897 66257426 3529 True 6519.0 6519 100.0000 1 3530 1 chr6D.!!$R1 3529
1 TraesCS6D01G102900 chr6D 66966860 66969908 3048 True 1236.5 2634 95.0655 1 3530 4 chr6D.!!$R4 3529
2 TraesCS6D01G102900 chr6D 66127242 66128801 1559 True 1191.1 2298 86.1805 959 2601 2 chr6D.!!$R2 1642
3 TraesCS6D01G102900 chr6D 66618795 66622261 3466 True 1044.2 2778 96.7064 1 3530 5 chr6D.!!$R3 3529
4 TraesCS6D01G102900 chr6B 141197990 141201107 3117 True 969.0 2652 93.8472 1 3530 5 chr6B.!!$R2 3529
5 TraesCS6D01G102900 chr6B 141255591 141258708 3117 True 967.0 2647 93.7712 1 3530 5 chr6B.!!$R3 3529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 751 0.325110 CCTCCCAGCAGGAAGAGAGA 60.325 60.0 0.0 0.0 46.94 3.10 F
2370 2470 0.035725 TCGGTCCTGACTTCTCGCTA 60.036 55.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2497 0.031994 AAACAAGCGTTGTCATGGGC 59.968 50.0 0.0 0.0 44.59 5.36 R
3261 3384 1.291877 ACGCACGATGAAGGTGAAGC 61.292 55.0 0.0 0.0 37.60 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
463 549 7.551585 CAAATTAGGGTGGCATGTAAAATACA 58.448 34.615 0.00 0.00 43.80 2.29
584 671 3.629858 GCTCGCCAAGCCTTTATTG 57.370 52.632 0.00 0.00 45.92 1.90
585 672 1.094785 GCTCGCCAAGCCTTTATTGA 58.905 50.000 0.00 0.00 45.92 2.57
586 673 1.678101 GCTCGCCAAGCCTTTATTGAT 59.322 47.619 0.00 0.00 45.92 2.57
587 674 2.287248 GCTCGCCAAGCCTTTATTGATC 60.287 50.000 0.00 0.00 45.92 2.92
588 675 2.945008 CTCGCCAAGCCTTTATTGATCA 59.055 45.455 0.00 0.00 0.00 2.92
589 676 2.682856 TCGCCAAGCCTTTATTGATCAC 59.317 45.455 0.00 0.00 0.00 3.06
590 677 2.223572 CGCCAAGCCTTTATTGATCACC 60.224 50.000 0.00 0.00 0.00 4.02
591 678 3.026694 GCCAAGCCTTTATTGATCACCT 58.973 45.455 0.00 0.00 0.00 4.00
592 679 4.207165 GCCAAGCCTTTATTGATCACCTA 58.793 43.478 0.00 0.00 0.00 3.08
593 680 4.644685 GCCAAGCCTTTATTGATCACCTAA 59.355 41.667 0.00 0.00 0.00 2.69
594 681 5.127031 GCCAAGCCTTTATTGATCACCTAAA 59.873 40.000 0.00 2.34 0.00 1.85
595 682 6.350949 GCCAAGCCTTTATTGATCACCTAAAA 60.351 38.462 0.00 0.00 0.00 1.52
596 683 7.633553 GCCAAGCCTTTATTGATCACCTAAAAT 60.634 37.037 0.00 0.00 0.00 1.82
597 684 7.707893 CCAAGCCTTTATTGATCACCTAAAATG 59.292 37.037 0.00 0.00 0.00 2.32
598 685 7.961326 AGCCTTTATTGATCACCTAAAATGT 57.039 32.000 0.00 0.00 0.00 2.71
599 686 8.366359 AGCCTTTATTGATCACCTAAAATGTT 57.634 30.769 0.00 0.00 0.00 2.71
600 687 8.815912 AGCCTTTATTGATCACCTAAAATGTTT 58.184 29.630 0.00 0.00 0.00 2.83
619 706 9.500701 AAATGTTTATAGGGATTACAATTGGGT 57.499 29.630 10.83 0.00 0.00 4.51
620 707 8.706322 ATGTTTATAGGGATTACAATTGGGTC 57.294 34.615 10.83 4.56 0.00 4.46
621 708 7.644062 TGTTTATAGGGATTACAATTGGGTCA 58.356 34.615 10.83 0.00 0.00 4.02
622 709 8.285891 TGTTTATAGGGATTACAATTGGGTCAT 58.714 33.333 10.83 0.00 0.00 3.06
623 710 8.576442 GTTTATAGGGATTACAATTGGGTCATG 58.424 37.037 10.83 0.00 0.00 3.07
624 711 3.299503 AGGGATTACAATTGGGTCATGC 58.700 45.455 10.83 1.37 0.00 4.06
625 712 3.052642 AGGGATTACAATTGGGTCATGCT 60.053 43.478 10.83 0.00 0.00 3.79
626 713 3.068590 GGGATTACAATTGGGTCATGCTG 59.931 47.826 10.83 0.00 0.00 4.41
627 714 3.068590 GGATTACAATTGGGTCATGCTGG 59.931 47.826 10.83 0.00 0.00 4.85
628 715 3.448093 TTACAATTGGGTCATGCTGGA 57.552 42.857 10.83 0.00 0.00 3.86
629 716 2.537633 ACAATTGGGTCATGCTGGAT 57.462 45.000 10.83 0.00 0.00 3.41
630 717 2.104967 ACAATTGGGTCATGCTGGATG 58.895 47.619 10.83 2.36 0.00 3.51
631 718 1.117150 AATTGGGTCATGCTGGATGC 58.883 50.000 4.06 0.07 43.25 3.91
632 719 0.757935 ATTGGGTCATGCTGGATGCC 60.758 55.000 4.06 8.84 42.00 4.40
633 720 2.520260 GGGTCATGCTGGATGCCC 60.520 66.667 19.73 19.73 39.64 5.36
634 721 2.276409 GGTCATGCTGGATGCCCA 59.724 61.111 4.25 0.00 42.00 5.36
635 722 1.380246 GGTCATGCTGGATGCCCAA 60.380 57.895 4.25 0.00 42.98 4.12
636 723 1.669999 GGTCATGCTGGATGCCCAAC 61.670 60.000 4.25 0.00 42.98 3.77
637 724 1.380246 TCATGCTGGATGCCCAACC 60.380 57.895 4.06 0.00 42.98 3.77
638 725 1.683025 CATGCTGGATGCCCAACCA 60.683 57.895 0.00 0.00 42.98 3.67
639 726 1.683365 ATGCTGGATGCCCAACCAC 60.683 57.895 0.00 0.00 42.98 4.16
640 727 2.283101 GCTGGATGCCCAACCACA 60.283 61.111 0.00 0.00 42.98 4.17
641 728 1.907807 GCTGGATGCCCAACCACAA 60.908 57.895 0.00 0.00 42.98 3.33
642 729 1.470996 GCTGGATGCCCAACCACAAA 61.471 55.000 0.00 0.00 42.98 2.83
643 730 1.269012 CTGGATGCCCAACCACAAAT 58.731 50.000 0.00 0.00 42.98 2.32
644 731 0.975135 TGGATGCCCAACCACAAATG 59.025 50.000 0.00 0.00 40.09 2.32
645 732 0.391528 GGATGCCCAACCACAAATGC 60.392 55.000 0.00 0.00 0.00 3.56
646 733 0.391528 GATGCCCAACCACAAATGCC 60.392 55.000 0.00 0.00 0.00 4.40
647 734 0.837260 ATGCCCAACCACAAATGCCT 60.837 50.000 0.00 0.00 0.00 4.75
648 735 1.293179 GCCCAACCACAAATGCCTC 59.707 57.895 0.00 0.00 0.00 4.70
649 736 1.974543 CCCAACCACAAATGCCTCC 59.025 57.895 0.00 0.00 0.00 4.30
650 737 1.543944 CCCAACCACAAATGCCTCCC 61.544 60.000 0.00 0.00 0.00 4.30
651 738 0.831288 CCAACCACAAATGCCTCCCA 60.831 55.000 0.00 0.00 0.00 4.37
652 739 0.604578 CAACCACAAATGCCTCCCAG 59.395 55.000 0.00 0.00 0.00 4.45
653 740 1.187567 AACCACAAATGCCTCCCAGC 61.188 55.000 0.00 0.00 0.00 4.85
660 747 2.203983 TGCCTCCCAGCAGGAAGA 60.204 61.111 0.00 0.00 46.94 2.87
661 748 2.296365 TGCCTCCCAGCAGGAAGAG 61.296 63.158 0.00 0.00 46.94 2.85
662 749 1.992277 GCCTCCCAGCAGGAAGAGA 60.992 63.158 0.00 0.00 46.94 3.10
663 750 1.970352 GCCTCCCAGCAGGAAGAGAG 61.970 65.000 0.00 0.00 46.94 3.20
664 751 0.325110 CCTCCCAGCAGGAAGAGAGA 60.325 60.000 0.00 0.00 46.94 3.10
665 752 1.692121 CCTCCCAGCAGGAAGAGAGAT 60.692 57.143 0.00 0.00 46.94 2.75
666 753 2.425538 CCTCCCAGCAGGAAGAGAGATA 60.426 54.545 0.00 0.00 46.94 1.98
667 754 2.627699 CTCCCAGCAGGAAGAGAGATAC 59.372 54.545 0.00 0.00 46.94 2.24
668 755 1.691434 CCCAGCAGGAAGAGAGATACC 59.309 57.143 0.00 0.00 38.24 2.73
669 756 2.392662 CCAGCAGGAAGAGAGATACCA 58.607 52.381 0.00 0.00 36.89 3.25
670 757 2.768527 CCAGCAGGAAGAGAGATACCAA 59.231 50.000 0.00 0.00 36.89 3.67
671 758 3.198635 CCAGCAGGAAGAGAGATACCAAA 59.801 47.826 0.00 0.00 36.89 3.28
672 759 4.141528 CCAGCAGGAAGAGAGATACCAAAT 60.142 45.833 0.00 0.00 36.89 2.32
673 760 5.055812 CAGCAGGAAGAGAGATACCAAATC 58.944 45.833 0.00 0.00 0.00 2.17
674 761 4.968080 AGCAGGAAGAGAGATACCAAATCT 59.032 41.667 0.00 0.00 0.00 2.40
675 762 6.041409 CAGCAGGAAGAGAGATACCAAATCTA 59.959 42.308 0.00 0.00 0.00 1.98
676 763 6.267471 AGCAGGAAGAGAGATACCAAATCTAG 59.733 42.308 0.00 0.00 0.00 2.43
677 764 6.454795 CAGGAAGAGAGATACCAAATCTAGC 58.545 44.000 0.00 0.00 0.00 3.42
678 765 6.041409 CAGGAAGAGAGATACCAAATCTAGCA 59.959 42.308 0.00 0.00 0.00 3.49
679 766 6.613271 AGGAAGAGAGATACCAAATCTAGCAA 59.387 38.462 0.00 0.00 0.00 3.91
680 767 6.928492 GGAAGAGAGATACCAAATCTAGCAAG 59.072 42.308 0.00 0.00 0.00 4.01
681 768 7.418483 GGAAGAGAGATACCAAATCTAGCAAGT 60.418 40.741 0.00 0.00 0.00 3.16
682 769 7.049799 AGAGAGATACCAAATCTAGCAAGTC 57.950 40.000 0.00 0.00 0.00 3.01
683 770 6.838612 AGAGAGATACCAAATCTAGCAAGTCT 59.161 38.462 0.00 0.00 0.00 3.24
684 771 8.001875 AGAGAGATACCAAATCTAGCAAGTCTA 58.998 37.037 0.00 0.00 0.00 2.59
685 772 8.719645 AGAGATACCAAATCTAGCAAGTCTAT 57.280 34.615 0.00 0.00 0.00 1.98
686 773 8.584157 AGAGATACCAAATCTAGCAAGTCTATG 58.416 37.037 0.00 0.00 0.00 2.23
687 774 8.484214 AGATACCAAATCTAGCAAGTCTATGA 57.516 34.615 0.00 0.00 0.00 2.15
688 775 8.584157 AGATACCAAATCTAGCAAGTCTATGAG 58.416 37.037 0.00 0.00 0.00 2.90
689 776 5.363939 ACCAAATCTAGCAAGTCTATGAGC 58.636 41.667 0.00 0.00 0.00 4.26
690 777 4.754114 CCAAATCTAGCAAGTCTATGAGCC 59.246 45.833 0.00 0.00 0.00 4.70
691 778 5.454471 CCAAATCTAGCAAGTCTATGAGCCT 60.454 44.000 0.00 0.00 0.00 4.58
692 779 5.467035 AATCTAGCAAGTCTATGAGCCTC 57.533 43.478 0.00 0.00 0.00 4.70
693 780 3.903467 TCTAGCAAGTCTATGAGCCTCA 58.097 45.455 0.00 0.00 0.00 3.86
694 781 4.478203 TCTAGCAAGTCTATGAGCCTCAT 58.522 43.478 12.62 12.62 40.72 2.90
695 782 5.635120 TCTAGCAAGTCTATGAGCCTCATA 58.365 41.667 13.58 13.58 38.26 2.15
704 791 5.041951 CTATGAGCCTCATAGTTCGACTC 57.958 47.826 26.74 0.00 46.92 3.36
705 792 3.006112 TGAGCCTCATAGTTCGACTCT 57.994 47.619 0.00 0.00 0.00 3.24
706 793 2.946329 TGAGCCTCATAGTTCGACTCTC 59.054 50.000 0.00 0.00 0.00 3.20
707 794 1.944024 AGCCTCATAGTTCGACTCTCG 59.056 52.381 0.00 0.00 42.10 4.04
708 795 7.933938 ATGAGCCTCATAGTTCGACTCTCGA 62.934 48.000 5.13 0.00 40.37 4.04
717 804 2.991434 TCGACTCTCGAGGTTCAAAG 57.009 50.000 13.56 3.66 44.82 2.77
718 805 1.540267 TCGACTCTCGAGGTTCAAAGG 59.460 52.381 13.56 0.00 44.82 3.11
719 806 1.540267 CGACTCTCGAGGTTCAAAGGA 59.460 52.381 13.56 0.00 43.74 3.36
720 807 2.030185 CGACTCTCGAGGTTCAAAGGAA 60.030 50.000 13.56 0.00 43.74 3.36
721 808 3.552273 CGACTCTCGAGGTTCAAAGGAAA 60.552 47.826 13.56 0.00 43.74 3.13
722 809 4.377897 GACTCTCGAGGTTCAAAGGAAAA 58.622 43.478 13.56 0.00 34.13 2.29
723 810 4.777463 ACTCTCGAGGTTCAAAGGAAAAA 58.223 39.130 13.56 0.00 34.13 1.94
724 811 5.377478 ACTCTCGAGGTTCAAAGGAAAAAT 58.623 37.500 13.56 0.00 34.13 1.82
725 812 5.828328 ACTCTCGAGGTTCAAAGGAAAAATT 59.172 36.000 13.56 0.00 34.13 1.82
726 813 6.996282 ACTCTCGAGGTTCAAAGGAAAAATTA 59.004 34.615 13.56 0.00 34.13 1.40
727 814 7.041303 ACTCTCGAGGTTCAAAGGAAAAATTAC 60.041 37.037 13.56 0.00 34.13 1.89
728 815 6.768861 TCTCGAGGTTCAAAGGAAAAATTACA 59.231 34.615 13.56 0.00 34.13 2.41
729 816 7.283580 TCTCGAGGTTCAAAGGAAAAATTACAA 59.716 33.333 13.56 0.00 34.13 2.41
730 817 7.422399 TCGAGGTTCAAAGGAAAAATTACAAG 58.578 34.615 0.00 0.00 34.13 3.16
731 818 7.067737 TCGAGGTTCAAAGGAAAAATTACAAGT 59.932 33.333 0.00 0.00 34.13 3.16
732 819 7.378728 CGAGGTTCAAAGGAAAAATTACAAGTC 59.621 37.037 0.00 0.00 34.13 3.01
733 820 8.073467 AGGTTCAAAGGAAAAATTACAAGTCA 57.927 30.769 0.00 0.00 34.13 3.41
734 821 8.704668 AGGTTCAAAGGAAAAATTACAAGTCAT 58.295 29.630 0.00 0.00 34.13 3.06
735 822 8.764287 GGTTCAAAGGAAAAATTACAAGTCATG 58.236 33.333 0.00 0.00 34.13 3.07
736 823 9.528018 GTTCAAAGGAAAAATTACAAGTCATGA 57.472 29.630 0.00 0.00 34.13 3.07
745 832 9.840427 AAAAATTACAAGTCATGAATAAGACGG 57.160 29.630 0.00 0.00 39.67 4.79
746 833 8.786826 AAATTACAAGTCATGAATAAGACGGA 57.213 30.769 0.00 0.00 39.67 4.69
747 834 8.786826 AATTACAAGTCATGAATAAGACGGAA 57.213 30.769 0.00 0.00 39.67 4.30
748 835 8.964476 ATTACAAGTCATGAATAAGACGGAAT 57.036 30.769 0.00 0.00 39.67 3.01
749 836 8.786826 TTACAAGTCATGAATAAGACGGAATT 57.213 30.769 0.00 0.00 39.67 2.17
750 837 7.687941 ACAAGTCATGAATAAGACGGAATTT 57.312 32.000 0.00 0.00 39.67 1.82
751 838 8.110860 ACAAGTCATGAATAAGACGGAATTTT 57.889 30.769 0.00 0.00 39.67 1.82
752 839 8.023128 ACAAGTCATGAATAAGACGGAATTTTG 58.977 33.333 0.00 0.00 39.67 2.44
753 840 7.687941 AGTCATGAATAAGACGGAATTTTGT 57.312 32.000 0.00 0.00 39.67 2.83
754 841 8.786826 AGTCATGAATAAGACGGAATTTTGTA 57.213 30.769 0.00 0.00 39.67 2.41
755 842 9.226606 AGTCATGAATAAGACGGAATTTTGTAA 57.773 29.630 0.00 0.00 39.67 2.41
756 843 9.490663 GTCATGAATAAGACGGAATTTTGTAAG 57.509 33.333 0.00 0.00 0.00 2.34
757 844 9.443323 TCATGAATAAGACGGAATTTTGTAAGA 57.557 29.630 0.00 0.00 0.00 2.10
760 847 9.667107 TGAATAAGACGGAATTTTGTAAGATCT 57.333 29.630 0.00 0.00 0.00 2.75
762 849 9.892130 AATAAGACGGAATTTTGTAAGATCTCT 57.108 29.630 0.00 0.00 0.00 3.10
763 850 9.892130 ATAAGACGGAATTTTGTAAGATCTCTT 57.108 29.630 0.00 0.00 39.85 2.85
764 851 8.622948 AAGACGGAATTTTGTAAGATCTCTTT 57.377 30.769 0.00 0.00 37.40 2.52
765 852 8.034058 AGACGGAATTTTGTAAGATCTCTTTG 57.966 34.615 0.00 0.00 37.40 2.77
766 853 7.878127 AGACGGAATTTTGTAAGATCTCTTTGA 59.122 33.333 0.00 0.00 37.40 2.69
767 854 8.567285 ACGGAATTTTGTAAGATCTCTTTGAT 57.433 30.769 0.00 0.00 37.40 2.57
768 855 8.454106 ACGGAATTTTGTAAGATCTCTTTGATG 58.546 33.333 0.00 0.00 37.40 3.07
769 856 8.668353 CGGAATTTTGTAAGATCTCTTTGATGA 58.332 33.333 0.00 0.00 37.40 2.92
944 1033 3.243501 CGATCCTTGGGGTTGCATAATTG 60.244 47.826 0.00 0.00 0.00 2.32
957 1046 5.669164 TGCATAATTGTTTTTAGGGGGTC 57.331 39.130 0.00 0.00 0.00 4.46
2034 2132 0.742281 CTGGGATGCACGGACTTCTG 60.742 60.000 0.00 0.00 0.00 3.02
2136 2234 1.603172 CGAGCTCGGGATTACCATGAC 60.603 57.143 28.40 0.00 40.22 3.06
2140 2238 2.201732 CTCGGGATTACCATGACAACG 58.798 52.381 0.00 0.00 40.22 4.10
2155 2253 2.961669 AACGGCGTTTAAGCTGCGG 61.962 57.895 21.19 10.23 46.91 5.69
2161 2259 0.110373 CGTTTAAGCTGCGGTGGTTC 60.110 55.000 0.00 0.00 0.00 3.62
2185 2283 1.141019 GAAGAGCGGCACCGTGATA 59.859 57.895 11.27 0.00 42.09 2.15
2194 2292 0.928229 GCACCGTGATATTCACCGTC 59.072 55.000 1.65 0.00 44.20 4.79
2215 2313 1.904990 GAGAAGGAGGAGGGTGCACC 61.905 65.000 28.57 28.57 40.67 5.01
2218 2316 2.930562 GGAGGAGGGTGCACCAGT 60.931 66.667 35.78 23.20 43.89 4.00
2233 2331 0.824109 CCAGTCAGGGCGTCTTCATA 59.176 55.000 0.00 0.00 0.00 2.15
2248 2346 5.288472 CGTCTTCATATTGAACATCACGACA 59.712 40.000 0.00 0.00 32.21 4.35
2249 2347 6.183360 CGTCTTCATATTGAACATCACGACAA 60.183 38.462 0.00 0.00 32.21 3.18
2351 2451 1.674441 TCTTTGCGTCGTCCGATAGAT 59.326 47.619 0.00 0.00 39.56 1.98
2352 2452 2.044860 CTTTGCGTCGTCCGATAGATC 58.955 52.381 0.00 0.00 39.56 2.75
2364 2464 3.546002 CGATAGATCGGTCCTGACTTC 57.454 52.381 3.95 0.00 45.93 3.01
2365 2465 3.142951 CGATAGATCGGTCCTGACTTCT 58.857 50.000 3.95 1.31 45.93 2.85
2366 2466 3.187637 CGATAGATCGGTCCTGACTTCTC 59.812 52.174 3.95 0.00 45.93 2.87
2367 2467 1.384525 AGATCGGTCCTGACTTCTCG 58.615 55.000 0.00 0.00 0.00 4.04
2368 2468 0.248702 GATCGGTCCTGACTTCTCGC 60.249 60.000 0.00 0.00 0.00 5.03
2369 2469 0.681564 ATCGGTCCTGACTTCTCGCT 60.682 55.000 0.00 0.00 0.00 4.93
2370 2470 0.035725 TCGGTCCTGACTTCTCGCTA 60.036 55.000 0.00 0.00 0.00 4.26
2371 2471 0.809385 CGGTCCTGACTTCTCGCTAA 59.191 55.000 0.00 0.00 0.00 3.09
2372 2472 1.201647 CGGTCCTGACTTCTCGCTAAA 59.798 52.381 0.00 0.00 0.00 1.85
2373 2473 2.352421 CGGTCCTGACTTCTCGCTAAAA 60.352 50.000 0.00 0.00 0.00 1.52
2374 2474 3.660865 GGTCCTGACTTCTCGCTAAAAA 58.339 45.455 0.00 0.00 0.00 1.94
2375 2475 4.254492 GGTCCTGACTTCTCGCTAAAAAT 58.746 43.478 0.00 0.00 0.00 1.82
2376 2476 5.416947 GGTCCTGACTTCTCGCTAAAAATA 58.583 41.667 0.00 0.00 0.00 1.40
2377 2477 5.520649 GGTCCTGACTTCTCGCTAAAAATAG 59.479 44.000 0.00 0.00 0.00 1.73
2378 2478 5.005875 GTCCTGACTTCTCGCTAAAAATAGC 59.994 44.000 0.00 0.00 39.59 2.97
2379 2479 5.105310 TCCTGACTTCTCGCTAAAAATAGCT 60.105 40.000 6.31 0.00 40.75 3.32
2380 2480 5.233263 CCTGACTTCTCGCTAAAAATAGCTC 59.767 44.000 0.00 0.00 40.75 4.09
2381 2481 4.798907 TGACTTCTCGCTAAAAATAGCTCG 59.201 41.667 0.00 0.00 40.75 5.03
2382 2482 4.995124 ACTTCTCGCTAAAAATAGCTCGA 58.005 39.130 0.00 0.00 40.75 4.04
2383 2483 5.038033 ACTTCTCGCTAAAAATAGCTCGAG 58.962 41.667 8.45 8.45 40.75 4.04
2384 2484 4.634184 TCTCGCTAAAAATAGCTCGAGT 57.366 40.909 15.13 3.51 40.75 4.18
2385 2485 5.746307 TCTCGCTAAAAATAGCTCGAGTA 57.254 39.130 15.13 5.77 40.75 2.59
2386 2486 5.508872 TCTCGCTAAAAATAGCTCGAGTAC 58.491 41.667 15.13 0.00 40.75 2.73
2387 2487 4.604976 TCGCTAAAAATAGCTCGAGTACC 58.395 43.478 15.13 0.00 40.75 3.34
2388 2488 4.337555 TCGCTAAAAATAGCTCGAGTACCT 59.662 41.667 15.13 5.26 40.75 3.08
2389 2489 4.676018 CGCTAAAAATAGCTCGAGTACCTC 59.324 45.833 15.13 0.00 40.75 3.85
2390 2490 5.589192 GCTAAAAATAGCTCGAGTACCTCA 58.411 41.667 15.13 0.00 39.84 3.86
2391 2491 5.688176 GCTAAAAATAGCTCGAGTACCTCAG 59.312 44.000 15.13 3.82 39.84 3.35
2392 2492 3.719173 AAATAGCTCGAGTACCTCAGC 57.281 47.619 15.13 0.00 36.03 4.26
2393 2493 2.350057 ATAGCTCGAGTACCTCAGCA 57.650 50.000 15.13 0.00 37.22 4.41
2394 2494 1.380524 TAGCTCGAGTACCTCAGCAC 58.619 55.000 15.13 0.00 37.22 4.40
2395 2495 0.609406 AGCTCGAGTACCTCAGCACA 60.609 55.000 15.13 0.00 37.22 4.57
2396 2496 0.457851 GCTCGAGTACCTCAGCACAT 59.542 55.000 15.13 0.00 35.93 3.21
2397 2497 1.800655 GCTCGAGTACCTCAGCACATG 60.801 57.143 15.13 0.00 35.93 3.21
2398 2498 0.173481 TCGAGTACCTCAGCACATGC 59.827 55.000 0.00 0.00 42.49 4.06
2399 2499 0.807667 CGAGTACCTCAGCACATGCC 60.808 60.000 0.00 0.00 43.38 4.40
2400 2500 0.462759 GAGTACCTCAGCACATGCCC 60.463 60.000 0.00 0.00 43.38 5.36
2401 2501 1.200760 AGTACCTCAGCACATGCCCA 61.201 55.000 0.00 0.00 43.38 5.36
2402 2502 0.107017 GTACCTCAGCACATGCCCAT 60.107 55.000 0.00 0.00 43.38 4.00
2403 2503 0.107066 TACCTCAGCACATGCCCATG 60.107 55.000 6.71 6.71 43.38 3.66
2404 2504 1.077285 CCTCAGCACATGCCCATGA 60.077 57.895 14.69 0.00 43.38 3.07
2405 2505 1.381928 CCTCAGCACATGCCCATGAC 61.382 60.000 14.69 6.60 43.38 3.06
2406 2506 0.678684 CTCAGCACATGCCCATGACA 60.679 55.000 14.69 0.00 43.38 3.58
2407 2507 0.251253 TCAGCACATGCCCATGACAA 60.251 50.000 14.69 0.00 43.38 3.18
2408 2508 0.108992 CAGCACATGCCCATGACAAC 60.109 55.000 14.69 1.91 43.38 3.32
2409 2509 1.153978 GCACATGCCCATGACAACG 60.154 57.895 14.69 0.00 41.20 4.10
2410 2510 1.153978 CACATGCCCATGACAACGC 60.154 57.895 14.69 0.00 41.20 4.84
2411 2511 1.303561 ACATGCCCATGACAACGCT 60.304 52.632 14.69 0.00 41.20 5.07
2412 2512 0.895100 ACATGCCCATGACAACGCTT 60.895 50.000 14.69 0.00 41.20 4.68
2413 2513 0.457166 CATGCCCATGACAACGCTTG 60.457 55.000 2.09 0.00 41.20 4.01
2415 2515 1.106351 TGCCCATGACAACGCTTGTT 61.106 50.000 0.00 0.00 45.52 2.83
2416 2516 0.031994 GCCCATGACAACGCTTGTTT 59.968 50.000 0.00 0.00 45.52 2.83
2417 2517 1.537990 GCCCATGACAACGCTTGTTTT 60.538 47.619 0.00 0.00 45.52 2.43
2418 2518 2.820330 CCCATGACAACGCTTGTTTTT 58.180 42.857 0.00 0.00 45.52 1.94
2419 2519 2.794350 CCCATGACAACGCTTGTTTTTC 59.206 45.455 0.00 0.00 45.52 2.29
2420 2520 3.490761 CCCATGACAACGCTTGTTTTTCT 60.491 43.478 0.00 0.00 45.52 2.52
2421 2521 4.111916 CCATGACAACGCTTGTTTTTCTT 58.888 39.130 0.00 0.00 45.52 2.52
2422 2522 4.566360 CCATGACAACGCTTGTTTTTCTTT 59.434 37.500 0.00 0.00 45.52 2.52
2423 2523 5.063312 CCATGACAACGCTTGTTTTTCTTTT 59.937 36.000 0.00 0.00 45.52 2.27
2424 2524 6.402011 CCATGACAACGCTTGTTTTTCTTTTT 60.402 34.615 0.00 0.00 45.52 1.94
2425 2525 6.147038 TGACAACGCTTGTTTTTCTTTTTC 57.853 33.333 5.14 0.00 45.52 2.29
2426 2526 5.692204 TGACAACGCTTGTTTTTCTTTTTCA 59.308 32.000 5.14 0.00 45.52 2.69
2427 2527 6.128956 TGACAACGCTTGTTTTTCTTTTTCAG 60.129 34.615 5.14 0.00 45.52 3.02
2428 2528 5.120053 ACAACGCTTGTTTTTCTTTTTCAGG 59.880 36.000 0.00 0.00 42.22 3.86
2429 2529 5.066968 ACGCTTGTTTTTCTTTTTCAGGA 57.933 34.783 0.00 0.00 0.00 3.86
2430 2530 5.474825 ACGCTTGTTTTTCTTTTTCAGGAA 58.525 33.333 0.00 0.00 0.00 3.36
2431 2531 5.576774 ACGCTTGTTTTTCTTTTTCAGGAAG 59.423 36.000 0.00 0.00 0.00 3.46
2432 2532 5.576774 CGCTTGTTTTTCTTTTTCAGGAAGT 59.423 36.000 0.00 0.00 0.00 3.01
2433 2533 6.750039 CGCTTGTTTTTCTTTTTCAGGAAGTA 59.250 34.615 0.00 0.00 0.00 2.24
2434 2534 7.274686 CGCTTGTTTTTCTTTTTCAGGAAGTAA 59.725 33.333 0.00 0.00 0.00 2.24
2435 2535 8.931775 GCTTGTTTTTCTTTTTCAGGAAGTAAA 58.068 29.630 0.00 0.00 0.00 2.01
2437 2537 9.990360 TTGTTTTTCTTTTTCAGGAAGTAAACT 57.010 25.926 0.00 0.00 34.60 2.66
2438 2538 9.990360 TGTTTTTCTTTTTCAGGAAGTAAACTT 57.010 25.926 0.00 0.00 39.23 2.66
2552 2665 1.835483 CTGCCGTGTGTCTCTTGCAC 61.835 60.000 0.00 0.00 37.37 4.57
2602 2716 9.985730 ATGTGTGAAAATTGAATGAAACATACT 57.014 25.926 0.00 0.00 0.00 2.12
2603 2717 9.462174 TGTGTGAAAATTGAATGAAACATACTC 57.538 29.630 0.00 0.00 0.00 2.59
2604 2718 8.915654 GTGTGAAAATTGAATGAAACATACTCC 58.084 33.333 0.00 0.00 0.00 3.85
2605 2719 8.087750 TGTGAAAATTGAATGAAACATACTCCC 58.912 33.333 0.00 0.00 0.00 4.30
2606 2720 8.306761 GTGAAAATTGAATGAAACATACTCCCT 58.693 33.333 0.00 0.00 0.00 4.20
2607 2721 8.522830 TGAAAATTGAATGAAACATACTCCCTC 58.477 33.333 0.00 0.00 0.00 4.30
2608 2722 7.410120 AAATTGAATGAAACATACTCCCTCC 57.590 36.000 0.00 0.00 0.00 4.30
2609 2723 4.137116 TGAATGAAACATACTCCCTCCG 57.863 45.455 0.00 0.00 0.00 4.63
2610 2724 3.517901 TGAATGAAACATACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
2611 2725 4.019681 TGAATGAAACATACTCCCTCCGTT 60.020 41.667 0.00 0.00 0.00 4.44
2612 2726 4.569719 ATGAAACATACTCCCTCCGTTT 57.430 40.909 0.00 0.00 32.72 3.60
2613 2727 3.934068 TGAAACATACTCCCTCCGTTTC 58.066 45.455 0.00 0.00 43.55 2.78
2614 2728 3.581332 TGAAACATACTCCCTCCGTTTCT 59.419 43.478 12.81 0.00 43.61 2.52
2615 2729 4.773674 TGAAACATACTCCCTCCGTTTCTA 59.226 41.667 12.81 0.25 43.61 2.10
2616 2730 5.246656 TGAAACATACTCCCTCCGTTTCTAA 59.753 40.000 12.81 0.00 43.61 2.10
2617 2731 5.750352 AACATACTCCCTCCGTTTCTAAA 57.250 39.130 0.00 0.00 0.00 1.85
2618 2732 5.952347 ACATACTCCCTCCGTTTCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
2619 2733 7.427989 AACATACTCCCTCCGTTTCTAAATA 57.572 36.000 0.00 0.00 0.00 1.40
2620 2734 7.613551 ACATACTCCCTCCGTTTCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
2621 2735 8.030913 ACATACTCCCTCCGTTTCTAAATATT 57.969 34.615 0.00 0.00 0.00 1.28
2622 2736 8.491958 ACATACTCCCTCCGTTTCTAAATATTT 58.508 33.333 5.89 5.89 0.00 1.40
2623 2737 8.774586 CATACTCCCTCCGTTTCTAAATATTTG 58.225 37.037 11.05 1.65 0.00 2.32
2624 2738 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2625 2739 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2626 2740 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2627 2741 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2628 2742 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2629 2743 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2630 2744 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2648 2762 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
2649 2763 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
2650 2764 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
2661 2775 7.709269 TTCAACAAATGACTATATACGGAGC 57.291 36.000 0.00 0.00 37.92 4.70
2662 2776 6.811954 TCAACAAATGACTATATACGGAGCA 58.188 36.000 0.00 0.00 31.50 4.26
2663 2777 7.269316 TCAACAAATGACTATATACGGAGCAA 58.731 34.615 0.00 0.00 31.50 3.91
2664 2778 7.766738 TCAACAAATGACTATATACGGAGCAAA 59.233 33.333 0.00 0.00 31.50 3.68
2665 2779 8.394877 CAACAAATGACTATATACGGAGCAAAA 58.605 33.333 0.00 0.00 0.00 2.44
2666 2780 8.677148 ACAAATGACTATATACGGAGCAAAAT 57.323 30.769 0.00 0.00 0.00 1.82
2667 2781 8.559536 ACAAATGACTATATACGGAGCAAAATG 58.440 33.333 0.00 0.00 0.00 2.32
2668 2782 8.773645 CAAATGACTATATACGGAGCAAAATGA 58.226 33.333 0.00 0.00 0.00 2.57
2669 2783 8.539770 AATGACTATATACGGAGCAAAATGAG 57.460 34.615 0.00 0.00 0.00 2.90
2670 2784 7.050970 TGACTATATACGGAGCAAAATGAGT 57.949 36.000 0.00 0.00 0.00 3.41
2671 2785 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
2672 2786 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
2673 2787 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
2674 2788 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
2675 2789 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
2676 2790 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2677 2791 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2678 2792 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2679 2793 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2680 2794 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2716 2830 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
2718 2832 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
2719 2833 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
2720 2834 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
2721 2835 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
2722 2836 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
2723 2837 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
2724 2838 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
2725 2839 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
2726 2840 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
2727 2841 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
2728 2842 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
2729 2843 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
2730 2844 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
2731 2845 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
2734 2848 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
2740 2854 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2741 2855 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2754 2868 9.382244 CTCTAAAAAGACAAACATTTAGGAACG 57.618 33.333 0.00 0.00 36.48 3.95
2755 2869 8.347035 TCTAAAAAGACAAACATTTAGGAACGG 58.653 33.333 0.00 0.00 36.48 4.44
2756 2870 6.702716 AAAAGACAAACATTTAGGAACGGA 57.297 33.333 0.00 0.00 0.00 4.69
2757 2871 5.941948 AAGACAAACATTTAGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
2758 2872 4.324267 AGACAAACATTTAGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2759 2873 3.418047 ACAAACATTTAGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
2760 2874 3.073356 ACAAACATTTAGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
2761 2875 3.629142 AACATTTAGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2971 3091 0.329261 CAAGGTCCAAGCTCATCCCA 59.671 55.000 0.00 0.00 0.00 4.37
3043 3163 3.062639 CCTGAAATTCAACCATCTCGACG 59.937 47.826 0.00 0.00 0.00 5.12
3103 3223 5.833131 AGAAATGTGGTTGTTAGGACAATGT 59.167 36.000 0.00 0.00 46.63 2.71
3261 3384 2.729028 ATAAAACTGGATGACCCCCG 57.271 50.000 0.00 0.00 34.81 5.73
3503 4034 4.718940 ATATGTAGTTTGGTTTGCAGCC 57.281 40.909 2.76 2.76 0.00 4.85
3504 4035 1.769026 TGTAGTTTGGTTTGCAGCCA 58.231 45.000 7.85 7.85 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
554 641 3.705604 CTTGGCGAGCTTTTCTCAAAAA 58.294 40.909 0.00 0.00 41.98 1.94
555 642 3.354089 CTTGGCGAGCTTTTCTCAAAA 57.646 42.857 0.00 0.00 41.98 2.44
567 654 2.945008 TGATCAATAAAGGCTTGGCGAG 59.055 45.455 0.00 0.00 0.00 5.03
568 655 2.682856 GTGATCAATAAAGGCTTGGCGA 59.317 45.455 0.00 0.00 0.00 5.54
569 656 2.223572 GGTGATCAATAAAGGCTTGGCG 60.224 50.000 0.00 0.00 0.00 5.69
570 657 3.026694 AGGTGATCAATAAAGGCTTGGC 58.973 45.455 0.00 0.00 0.00 4.52
571 658 6.773976 TTTAGGTGATCAATAAAGGCTTGG 57.226 37.500 0.00 0.00 0.00 3.61
572 659 8.253113 ACATTTTAGGTGATCAATAAAGGCTTG 58.747 33.333 0.00 5.94 0.00 4.01
573 660 8.366359 ACATTTTAGGTGATCAATAAAGGCTT 57.634 30.769 0.00 0.00 0.00 4.35
574 661 7.961326 ACATTTTAGGTGATCAATAAAGGCT 57.039 32.000 0.00 0.00 0.00 4.58
593 680 9.500701 ACCCAATTGTAATCCCTATAAACATTT 57.499 29.630 4.43 0.00 0.00 2.32
594 681 9.143155 GACCCAATTGTAATCCCTATAAACATT 57.857 33.333 4.43 0.00 0.00 2.71
595 682 8.285891 TGACCCAATTGTAATCCCTATAAACAT 58.714 33.333 4.43 0.00 0.00 2.71
596 683 7.644062 TGACCCAATTGTAATCCCTATAAACA 58.356 34.615 4.43 0.00 0.00 2.83
597 684 8.576442 CATGACCCAATTGTAATCCCTATAAAC 58.424 37.037 4.43 0.00 0.00 2.01
598 685 7.232534 GCATGACCCAATTGTAATCCCTATAAA 59.767 37.037 4.43 0.00 0.00 1.40
599 686 6.719370 GCATGACCCAATTGTAATCCCTATAA 59.281 38.462 4.43 0.00 0.00 0.98
600 687 6.045459 AGCATGACCCAATTGTAATCCCTATA 59.955 38.462 4.43 0.00 0.00 1.31
601 688 5.079643 GCATGACCCAATTGTAATCCCTAT 58.920 41.667 4.43 0.00 0.00 2.57
602 689 4.167892 AGCATGACCCAATTGTAATCCCTA 59.832 41.667 4.43 0.00 0.00 3.53
603 690 3.052642 AGCATGACCCAATTGTAATCCCT 60.053 43.478 4.43 0.00 0.00 4.20
604 691 3.068590 CAGCATGACCCAATTGTAATCCC 59.931 47.826 4.43 0.00 39.69 3.85
605 692 3.068590 CCAGCATGACCCAATTGTAATCC 59.931 47.826 4.43 0.00 39.69 3.01
606 693 3.953612 TCCAGCATGACCCAATTGTAATC 59.046 43.478 4.43 0.00 39.69 1.75
607 694 3.979911 TCCAGCATGACCCAATTGTAAT 58.020 40.909 4.43 0.00 39.69 1.89
608 695 3.448093 TCCAGCATGACCCAATTGTAA 57.552 42.857 4.43 0.00 39.69 2.41
609 696 3.289836 CATCCAGCATGACCCAATTGTA 58.710 45.455 4.43 0.00 39.69 2.41
610 697 2.104967 CATCCAGCATGACCCAATTGT 58.895 47.619 4.43 0.00 39.69 2.71
611 698 1.202486 GCATCCAGCATGACCCAATTG 60.202 52.381 0.00 0.00 44.79 2.32
612 699 1.117150 GCATCCAGCATGACCCAATT 58.883 50.000 0.00 0.00 44.79 2.32
613 700 2.816746 GCATCCAGCATGACCCAAT 58.183 52.632 0.00 0.00 44.79 3.16
614 701 4.342427 GCATCCAGCATGACCCAA 57.658 55.556 0.00 0.00 44.79 4.12
623 710 1.470996 TTTGTGGTTGGGCATCCAGC 61.471 55.000 0.00 0.00 45.04 4.85
624 711 1.066716 CATTTGTGGTTGGGCATCCAG 60.067 52.381 0.00 0.00 45.04 3.86
625 712 0.975135 CATTTGTGGTTGGGCATCCA 59.025 50.000 0.00 0.00 42.25 3.41
626 713 0.391528 GCATTTGTGGTTGGGCATCC 60.392 55.000 0.00 0.00 0.00 3.51
627 714 0.391528 GGCATTTGTGGTTGGGCATC 60.392 55.000 0.00 0.00 0.00 3.91
628 715 0.837260 AGGCATTTGTGGTTGGGCAT 60.837 50.000 0.00 0.00 0.00 4.40
629 716 1.459158 AGGCATTTGTGGTTGGGCA 60.459 52.632 0.00 0.00 0.00 5.36
630 717 1.293179 GAGGCATTTGTGGTTGGGC 59.707 57.895 0.00 0.00 0.00 5.36
631 718 1.543944 GGGAGGCATTTGTGGTTGGG 61.544 60.000 0.00 0.00 0.00 4.12
632 719 0.831288 TGGGAGGCATTTGTGGTTGG 60.831 55.000 0.00 0.00 0.00 3.77
633 720 0.604578 CTGGGAGGCATTTGTGGTTG 59.395 55.000 0.00 0.00 0.00 3.77
634 721 1.187567 GCTGGGAGGCATTTGTGGTT 61.188 55.000 0.00 0.00 0.00 3.67
635 722 1.607467 GCTGGGAGGCATTTGTGGT 60.607 57.895 0.00 0.00 0.00 4.16
636 723 1.601419 CTGCTGGGAGGCATTTGTGG 61.601 60.000 0.00 0.00 41.63 4.17
637 724 1.601419 CCTGCTGGGAGGCATTTGTG 61.601 60.000 0.71 0.00 41.63 3.33
638 725 1.304713 CCTGCTGGGAGGCATTTGT 60.305 57.895 0.71 0.00 41.63 2.83
639 726 0.612732 TTCCTGCTGGGAGGCATTTG 60.613 55.000 10.07 0.00 46.01 2.32
640 727 0.324091 CTTCCTGCTGGGAGGCATTT 60.324 55.000 10.13 0.00 46.01 2.32
641 728 1.210204 TCTTCCTGCTGGGAGGCATT 61.210 55.000 17.39 0.00 46.01 3.56
642 729 1.617536 TCTTCCTGCTGGGAGGCAT 60.618 57.895 17.39 0.00 46.01 4.40
643 730 2.203983 TCTTCCTGCTGGGAGGCA 60.204 61.111 17.39 0.00 46.01 4.75
644 731 1.970352 CTCTCTTCCTGCTGGGAGGC 61.970 65.000 17.39 0.00 46.01 4.70
645 732 0.325110 TCTCTCTTCCTGCTGGGAGG 60.325 60.000 17.39 9.66 46.01 4.30
646 733 1.792115 ATCTCTCTTCCTGCTGGGAG 58.208 55.000 11.75 11.75 46.01 4.30
647 734 2.672098 GTATCTCTCTTCCTGCTGGGA 58.328 52.381 10.07 0.00 43.41 4.37
648 735 1.691434 GGTATCTCTCTTCCTGCTGGG 59.309 57.143 10.07 0.00 0.00 4.45
649 736 2.392662 TGGTATCTCTCTTCCTGCTGG 58.607 52.381 2.58 2.58 0.00 4.85
650 737 4.478206 TTTGGTATCTCTCTTCCTGCTG 57.522 45.455 0.00 0.00 0.00 4.41
651 738 4.968080 AGATTTGGTATCTCTCTTCCTGCT 59.032 41.667 0.00 0.00 0.00 4.24
652 739 5.289083 AGATTTGGTATCTCTCTTCCTGC 57.711 43.478 0.00 0.00 0.00 4.85
653 740 6.041409 TGCTAGATTTGGTATCTCTCTTCCTG 59.959 42.308 0.00 0.00 0.00 3.86
654 741 6.139671 TGCTAGATTTGGTATCTCTCTTCCT 58.860 40.000 0.00 0.00 0.00 3.36
655 742 6.412362 TGCTAGATTTGGTATCTCTCTTCC 57.588 41.667 0.00 0.00 0.00 3.46
656 743 7.496747 ACTTGCTAGATTTGGTATCTCTCTTC 58.503 38.462 1.04 0.00 0.00 2.87
657 744 7.344352 AGACTTGCTAGATTTGGTATCTCTCTT 59.656 37.037 1.04 0.00 0.00 2.85
658 745 6.838612 AGACTTGCTAGATTTGGTATCTCTCT 59.161 38.462 1.04 0.00 0.00 3.10
659 746 7.049799 AGACTTGCTAGATTTGGTATCTCTC 57.950 40.000 1.04 0.00 0.00 3.20
660 747 8.584157 CATAGACTTGCTAGATTTGGTATCTCT 58.416 37.037 1.04 0.00 31.33 3.10
661 748 8.580720 TCATAGACTTGCTAGATTTGGTATCTC 58.419 37.037 1.04 0.00 31.33 2.75
662 749 8.484214 TCATAGACTTGCTAGATTTGGTATCT 57.516 34.615 1.04 0.00 31.33 1.98
663 750 7.330700 GCTCATAGACTTGCTAGATTTGGTATC 59.669 40.741 1.04 0.00 31.33 2.24
664 751 7.158021 GCTCATAGACTTGCTAGATTTGGTAT 58.842 38.462 1.04 0.00 31.33 2.73
665 752 6.463049 GGCTCATAGACTTGCTAGATTTGGTA 60.463 42.308 1.04 0.00 31.33 3.25
666 753 5.363939 GCTCATAGACTTGCTAGATTTGGT 58.636 41.667 1.04 0.00 31.33 3.67
667 754 4.754114 GGCTCATAGACTTGCTAGATTTGG 59.246 45.833 1.04 0.00 31.33 3.28
668 755 5.609423 AGGCTCATAGACTTGCTAGATTTG 58.391 41.667 1.04 0.00 17.74 2.32
669 756 5.365025 TGAGGCTCATAGACTTGCTAGATTT 59.635 40.000 14.43 0.00 30.20 2.17
670 757 4.898265 TGAGGCTCATAGACTTGCTAGATT 59.102 41.667 14.43 0.00 30.20 2.40
671 758 4.478203 TGAGGCTCATAGACTTGCTAGAT 58.522 43.478 14.43 0.00 30.20 1.98
672 759 3.903467 TGAGGCTCATAGACTTGCTAGA 58.097 45.455 14.43 0.00 30.20 2.43
673 760 4.870123 ATGAGGCTCATAGACTTGCTAG 57.130 45.455 27.87 0.00 30.20 3.42
683 770 4.720046 AGAGTCGAACTATGAGGCTCATA 58.280 43.478 29.92 29.92 38.26 2.15
684 771 3.561143 AGAGTCGAACTATGAGGCTCAT 58.439 45.455 30.89 30.89 40.72 2.90
685 772 2.946329 GAGAGTCGAACTATGAGGCTCA 59.054 50.000 21.19 21.19 0.00 4.26
686 773 2.032377 CGAGAGTCGAACTATGAGGCTC 60.032 54.545 7.79 7.79 43.74 4.70
687 774 1.944024 CGAGAGTCGAACTATGAGGCT 59.056 52.381 0.00 0.00 43.74 4.58
688 775 1.941294 TCGAGAGTCGAACTATGAGGC 59.059 52.381 0.00 0.00 46.90 4.70
699 786 1.540267 TCCTTTGAACCTCGAGAGTCG 59.460 52.381 15.71 0.00 42.10 4.18
700 787 3.662247 TTCCTTTGAACCTCGAGAGTC 57.338 47.619 15.71 11.07 0.00 3.36
701 788 4.417426 TTTTCCTTTGAACCTCGAGAGT 57.583 40.909 15.71 7.40 0.00 3.24
702 789 5.948992 ATTTTTCCTTTGAACCTCGAGAG 57.051 39.130 15.71 6.69 0.00 3.20
703 790 6.768861 TGTAATTTTTCCTTTGAACCTCGAGA 59.231 34.615 15.71 0.00 0.00 4.04
704 791 6.966021 TGTAATTTTTCCTTTGAACCTCGAG 58.034 36.000 5.13 5.13 0.00 4.04
705 792 6.945938 TGTAATTTTTCCTTTGAACCTCGA 57.054 33.333 0.00 0.00 0.00 4.04
706 793 7.200455 ACTTGTAATTTTTCCTTTGAACCTCG 58.800 34.615 0.00 0.00 0.00 4.63
707 794 8.194769 TGACTTGTAATTTTTCCTTTGAACCTC 58.805 33.333 0.00 0.00 0.00 3.85
708 795 8.073467 TGACTTGTAATTTTTCCTTTGAACCT 57.927 30.769 0.00 0.00 0.00 3.50
709 796 8.764287 CATGACTTGTAATTTTTCCTTTGAACC 58.236 33.333 0.00 0.00 0.00 3.62
710 797 9.528018 TCATGACTTGTAATTTTTCCTTTGAAC 57.472 29.630 0.00 0.00 0.00 3.18
719 806 9.840427 CCGTCTTATTCATGACTTGTAATTTTT 57.160 29.630 0.00 0.00 0.00 1.94
720 807 9.226606 TCCGTCTTATTCATGACTTGTAATTTT 57.773 29.630 0.00 0.00 0.00 1.82
721 808 8.786826 TCCGTCTTATTCATGACTTGTAATTT 57.213 30.769 0.00 0.00 0.00 1.82
722 809 8.786826 TTCCGTCTTATTCATGACTTGTAATT 57.213 30.769 0.00 0.00 0.00 1.40
723 810 8.964476 ATTCCGTCTTATTCATGACTTGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
724 811 8.786826 AATTCCGTCTTATTCATGACTTGTAA 57.213 30.769 0.00 0.00 0.00 2.41
725 812 8.786826 AAATTCCGTCTTATTCATGACTTGTA 57.213 30.769 0.00 0.00 0.00 2.41
726 813 7.687941 AAATTCCGTCTTATTCATGACTTGT 57.312 32.000 0.00 0.00 0.00 3.16
727 814 8.023128 ACAAAATTCCGTCTTATTCATGACTTG 58.977 33.333 0.00 0.00 0.00 3.16
728 815 8.110860 ACAAAATTCCGTCTTATTCATGACTT 57.889 30.769 0.00 0.00 0.00 3.01
729 816 7.687941 ACAAAATTCCGTCTTATTCATGACT 57.312 32.000 0.00 0.00 0.00 3.41
730 817 9.490663 CTTACAAAATTCCGTCTTATTCATGAC 57.509 33.333 0.00 0.00 0.00 3.06
731 818 9.443323 TCTTACAAAATTCCGTCTTATTCATGA 57.557 29.630 0.00 0.00 0.00 3.07
734 821 9.667107 AGATCTTACAAAATTCCGTCTTATTCA 57.333 29.630 0.00 0.00 0.00 2.57
736 823 9.892130 AGAGATCTTACAAAATTCCGTCTTATT 57.108 29.630 0.00 0.00 0.00 1.40
737 824 9.892130 AAGAGATCTTACAAAATTCCGTCTTAT 57.108 29.630 0.00 0.00 33.79 1.73
738 825 9.720769 AAAGAGATCTTACAAAATTCCGTCTTA 57.279 29.630 0.00 0.00 34.61 2.10
739 826 8.507249 CAAAGAGATCTTACAAAATTCCGTCTT 58.493 33.333 0.00 0.00 34.61 3.01
740 827 7.878127 TCAAAGAGATCTTACAAAATTCCGTCT 59.122 33.333 0.00 0.00 34.61 4.18
741 828 8.029642 TCAAAGAGATCTTACAAAATTCCGTC 57.970 34.615 0.00 0.00 34.61 4.79
742 829 7.979444 TCAAAGAGATCTTACAAAATTCCGT 57.021 32.000 0.00 0.00 34.61 4.69
743 830 8.668353 TCATCAAAGAGATCTTACAAAATTCCG 58.332 33.333 0.00 0.00 33.72 4.30
763 850 9.964354 CCCTAAGACCATTATCATTATCATCAA 57.036 33.333 0.00 0.00 0.00 2.57
764 851 8.049117 GCCCTAAGACCATTATCATTATCATCA 58.951 37.037 0.00 0.00 0.00 3.07
765 852 8.049117 TGCCCTAAGACCATTATCATTATCATC 58.951 37.037 0.00 0.00 0.00 2.92
766 853 7.932134 TGCCCTAAGACCATTATCATTATCAT 58.068 34.615 0.00 0.00 0.00 2.45
767 854 7.328404 TGCCCTAAGACCATTATCATTATCA 57.672 36.000 0.00 0.00 0.00 2.15
768 855 8.814038 ATTGCCCTAAGACCATTATCATTATC 57.186 34.615 0.00 0.00 0.00 1.75
769 856 9.605951 AAATTGCCCTAAGACCATTATCATTAT 57.394 29.630 0.00 0.00 0.00 1.28
771 858 7.919385 AAATTGCCCTAAGACCATTATCATT 57.081 32.000 0.00 0.00 0.00 2.57
772 859 8.227507 ACTAAATTGCCCTAAGACCATTATCAT 58.772 33.333 0.00 0.00 0.00 2.45
773 860 7.582719 ACTAAATTGCCCTAAGACCATTATCA 58.417 34.615 0.00 0.00 0.00 2.15
774 861 8.465273 AACTAAATTGCCCTAAGACCATTATC 57.535 34.615 0.00 0.00 0.00 1.75
775 862 7.228706 CGAACTAAATTGCCCTAAGACCATTAT 59.771 37.037 0.00 0.00 0.00 1.28
776 863 6.540914 CGAACTAAATTGCCCTAAGACCATTA 59.459 38.462 0.00 0.00 0.00 1.90
777 864 5.357032 CGAACTAAATTGCCCTAAGACCATT 59.643 40.000 0.00 0.00 0.00 3.16
826 913 2.251642 GGCCGTTATTAGCCCAGCG 61.252 63.158 0.00 0.00 43.76 5.18
928 1017 6.234177 CCTAAAAACAATTATGCAACCCCAA 58.766 36.000 0.00 0.00 0.00 4.12
944 1033 0.537828 TGCACCGACCCCCTAAAAAC 60.538 55.000 0.00 0.00 0.00 2.43
957 1046 2.226437 GTGCCTCCATATTTATGCACCG 59.774 50.000 0.00 0.00 42.33 4.94
1997 2095 2.182030 GAAGCCCACGTCGAGGAG 59.818 66.667 12.85 3.57 0.00 3.69
2003 2101 2.670148 ATCCCAGGAAGCCCACGTC 61.670 63.158 0.00 0.00 33.88 4.34
2034 2132 1.134699 TCTGGGTCTCGATGTTGATGC 60.135 52.381 0.00 0.00 0.00 3.91
2136 2234 1.792057 CGCAGCTTAAACGCCGTTG 60.792 57.895 1.95 0.00 0.00 4.10
2140 2238 2.175811 CACCGCAGCTTAAACGCC 59.824 61.111 0.00 0.00 0.00 5.68
2155 2253 2.095252 GCTCTTCTCGCCGAACCAC 61.095 63.158 0.00 0.00 0.00 4.16
2180 2278 3.372954 CTTCTCCGACGGTGAATATCAC 58.627 50.000 26.53 1.88 46.23 3.06
2185 2283 0.818296 CTCCTTCTCCGACGGTGAAT 59.182 55.000 26.53 0.00 35.17 2.57
2194 2292 2.726351 GCACCCTCCTCCTTCTCCG 61.726 68.421 0.00 0.00 0.00 4.63
2215 2313 2.868583 CAATATGAAGACGCCCTGACTG 59.131 50.000 0.00 0.00 0.00 3.51
2218 2316 3.055458 TGTTCAATATGAAGACGCCCTGA 60.055 43.478 0.00 0.00 37.00 3.86
2233 2331 3.127548 GGCATCTTGTCGTGATGTTCAAT 59.872 43.478 0.00 0.00 42.21 2.57
2351 2451 0.035725 TAGCGAGAAGTCAGGACCGA 60.036 55.000 0.00 0.00 0.00 4.69
2352 2452 0.809385 TTAGCGAGAAGTCAGGACCG 59.191 55.000 0.00 0.00 0.00 4.79
2353 2453 3.314541 TTTTAGCGAGAAGTCAGGACC 57.685 47.619 0.00 0.00 0.00 4.46
2354 2454 5.005875 GCTATTTTTAGCGAGAAGTCAGGAC 59.994 44.000 0.00 0.00 32.99 3.85
2355 2455 5.109903 GCTATTTTTAGCGAGAAGTCAGGA 58.890 41.667 0.00 0.00 32.99 3.86
2356 2456 5.396750 GCTATTTTTAGCGAGAAGTCAGG 57.603 43.478 0.00 0.00 32.99 3.86
2382 2482 1.200760 TGGGCATGTGCTGAGGTACT 61.201 55.000 4.84 0.00 41.65 2.73
2383 2483 0.107017 ATGGGCATGTGCTGAGGTAC 60.107 55.000 4.84 0.00 41.70 3.34
2384 2484 0.107066 CATGGGCATGTGCTGAGGTA 60.107 55.000 4.84 0.00 41.70 3.08
2385 2485 1.379443 CATGGGCATGTGCTGAGGT 60.379 57.895 4.84 0.00 41.70 3.85
2386 2486 1.077285 TCATGGGCATGTGCTGAGG 60.077 57.895 4.84 0.00 41.70 3.86
2387 2487 0.678684 TGTCATGGGCATGTGCTGAG 60.679 55.000 4.84 0.00 41.70 3.35
2388 2488 0.251253 TTGTCATGGGCATGTGCTGA 60.251 50.000 4.84 0.00 41.70 4.26
2389 2489 0.108992 GTTGTCATGGGCATGTGCTG 60.109 55.000 4.84 0.00 41.70 4.41
2390 2490 1.588824 CGTTGTCATGGGCATGTGCT 61.589 55.000 4.84 0.00 41.70 4.40
2391 2491 1.153978 CGTTGTCATGGGCATGTGC 60.154 57.895 0.00 0.00 39.72 4.57
2392 2492 1.153978 GCGTTGTCATGGGCATGTG 60.154 57.895 0.00 0.00 39.72 3.21
2393 2493 0.895100 AAGCGTTGTCATGGGCATGT 60.895 50.000 0.00 0.00 39.72 3.21
2394 2494 0.457166 CAAGCGTTGTCATGGGCATG 60.457 55.000 0.00 0.00 40.09 4.06
2395 2495 0.895100 ACAAGCGTTGTCATGGGCAT 60.895 50.000 0.00 0.00 40.56 4.40
2396 2496 1.106351 AACAAGCGTTGTCATGGGCA 61.106 50.000 0.00 0.00 44.59 5.36
2397 2497 0.031994 AAACAAGCGTTGTCATGGGC 59.968 50.000 0.00 0.00 44.59 5.36
2398 2498 2.507339 AAAACAAGCGTTGTCATGGG 57.493 45.000 0.00 0.00 44.59 4.00
2399 2499 3.705604 AGAAAAACAAGCGTTGTCATGG 58.294 40.909 0.00 0.00 44.59 3.66
2400 2500 5.701029 AAAGAAAAACAAGCGTTGTCATG 57.299 34.783 4.28 0.00 44.59 3.07
2401 2501 6.367422 TGAAAAAGAAAAACAAGCGTTGTCAT 59.633 30.769 4.28 0.00 44.59 3.06
2402 2502 5.692204 TGAAAAAGAAAAACAAGCGTTGTCA 59.308 32.000 4.28 0.00 44.59 3.58
2403 2503 6.147038 TGAAAAAGAAAAACAAGCGTTGTC 57.853 33.333 4.28 0.00 44.59 3.18
2405 2505 5.347364 TCCTGAAAAAGAAAAACAAGCGTTG 59.653 36.000 0.00 0.00 34.86 4.10
2406 2506 5.474825 TCCTGAAAAAGAAAAACAAGCGTT 58.525 33.333 0.00 0.00 36.73 4.84
2407 2507 5.066968 TCCTGAAAAAGAAAAACAAGCGT 57.933 34.783 0.00 0.00 0.00 5.07
2408 2508 5.576774 ACTTCCTGAAAAAGAAAAACAAGCG 59.423 36.000 0.00 0.00 0.00 4.68
2409 2509 6.968131 ACTTCCTGAAAAAGAAAAACAAGC 57.032 33.333 0.00 0.00 0.00 4.01
2411 2511 9.990360 AGTTTACTTCCTGAAAAAGAAAAACAA 57.010 25.926 14.61 0.00 36.60 2.83
2412 2512 9.990360 AAGTTTACTTCCTGAAAAAGAAAAACA 57.010 25.926 14.61 0.00 36.60 2.83
2429 2529 5.537674 TCAGGACCGAAGTAGAAGTTTACTT 59.462 40.000 9.03 9.03 44.38 2.24
2430 2530 5.048154 GTCAGGACCGAAGTAGAAGTTTACT 60.048 44.000 0.00 0.00 35.44 2.24
2431 2531 5.048154 AGTCAGGACCGAAGTAGAAGTTTAC 60.048 44.000 0.00 0.00 0.00 2.01
2432 2532 5.075493 AGTCAGGACCGAAGTAGAAGTTTA 58.925 41.667 0.00 0.00 0.00 2.01
2433 2533 3.896272 AGTCAGGACCGAAGTAGAAGTTT 59.104 43.478 0.00 0.00 0.00 2.66
2434 2534 3.498334 AGTCAGGACCGAAGTAGAAGTT 58.502 45.455 0.00 0.00 0.00 2.66
2435 2535 3.157750 AGTCAGGACCGAAGTAGAAGT 57.842 47.619 0.00 0.00 0.00 3.01
2436 2536 3.759618 AGAAGTCAGGACCGAAGTAGAAG 59.240 47.826 0.00 0.00 0.00 2.85
2437 2537 3.757493 GAGAAGTCAGGACCGAAGTAGAA 59.243 47.826 0.00 0.00 0.00 2.10
2438 2538 3.345414 GAGAAGTCAGGACCGAAGTAGA 58.655 50.000 0.00 0.00 0.00 2.59
2439 2539 2.096174 CGAGAAGTCAGGACCGAAGTAG 59.904 54.545 0.00 0.00 0.00 2.57
2440 2540 2.082231 CGAGAAGTCAGGACCGAAGTA 58.918 52.381 0.00 0.00 0.00 2.24
2441 2541 0.882474 CGAGAAGTCAGGACCGAAGT 59.118 55.000 0.00 0.00 0.00 3.01
2442 2542 0.456995 GCGAGAAGTCAGGACCGAAG 60.457 60.000 0.00 0.00 0.00 3.79
2443 2543 1.585006 GCGAGAAGTCAGGACCGAA 59.415 57.895 0.00 0.00 0.00 4.30
2552 2665 5.104374 CCATGAAACAAAATCAAGATCCCG 58.896 41.667 0.00 0.00 0.00 5.14
2601 2715 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2602 2716 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2603 2717 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2604 2718 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2622 2736 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
2623 2737 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
2624 2738 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
2635 2749 8.774586 GCTCCGTATATAGTCATTTGTTGAAAT 58.225 33.333 0.00 0.00 35.70 2.17
2636 2750 7.766738 TGCTCCGTATATAGTCATTTGTTGAAA 59.233 33.333 0.00 0.00 35.70 2.69
2637 2751 7.269316 TGCTCCGTATATAGTCATTTGTTGAA 58.731 34.615 0.00 0.00 35.70 2.69
2638 2752 6.811954 TGCTCCGTATATAGTCATTTGTTGA 58.188 36.000 0.00 0.00 0.00 3.18
2639 2753 7.477144 TTGCTCCGTATATAGTCATTTGTTG 57.523 36.000 0.00 0.00 0.00 3.33
2640 2754 8.500753 TTTTGCTCCGTATATAGTCATTTGTT 57.499 30.769 0.00 0.00 0.00 2.83
2641 2755 8.559536 CATTTTGCTCCGTATATAGTCATTTGT 58.440 33.333 0.00 0.00 0.00 2.83
2642 2756 8.773645 TCATTTTGCTCCGTATATAGTCATTTG 58.226 33.333 0.00 0.00 0.00 2.32
2643 2757 8.902540 TCATTTTGCTCCGTATATAGTCATTT 57.097 30.769 0.00 0.00 0.00 2.32
2644 2758 8.150945 ACTCATTTTGCTCCGTATATAGTCATT 58.849 33.333 0.00 0.00 0.00 2.57
2645 2759 7.600375 CACTCATTTTGCTCCGTATATAGTCAT 59.400 37.037 0.00 0.00 0.00 3.06
2646 2760 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
2647 2761 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
2648 2762 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
2649 2763 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
2650 2764 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
2651 2765 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
2652 2766 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2653 2767 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2654 2768 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2655 2769 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2656 2770 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2657 2771 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2658 2772 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2690 2804 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
2692 2806 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
2693 2807 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
2694 2808 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
2695 2809 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
2696 2810 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
2697 2811 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
2698 2812 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
2700 2814 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
2701 2815 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
2702 2816 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
2703 2817 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
2704 2818 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
2705 2819 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
2708 2822 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
2714 2828 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2715 2829 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2728 2842 9.382244 CGTTCCTAAATGTTTGTCTTTTTAGAG 57.618 33.333 0.00 0.00 0.00 2.43
2729 2843 8.347035 CCGTTCCTAAATGTTTGTCTTTTTAGA 58.653 33.333 0.00 0.00 0.00 2.10
2730 2844 8.347035 TCCGTTCCTAAATGTTTGTCTTTTTAG 58.653 33.333 0.00 0.00 0.00 1.85
2731 2845 8.223177 TCCGTTCCTAAATGTTTGTCTTTTTA 57.777 30.769 0.00 0.00 0.00 1.52
2732 2846 7.102847 TCCGTTCCTAAATGTTTGTCTTTTT 57.897 32.000 0.00 0.00 0.00 1.94
2733 2847 6.238925 CCTCCGTTCCTAAATGTTTGTCTTTT 60.239 38.462 0.00 0.00 0.00 2.27
2734 2848 5.240844 CCTCCGTTCCTAAATGTTTGTCTTT 59.759 40.000 0.00 0.00 0.00 2.52
2735 2849 4.760204 CCTCCGTTCCTAAATGTTTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
2736 2850 4.324267 CCTCCGTTCCTAAATGTTTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
2737 2851 3.439129 CCCTCCGTTCCTAAATGTTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
2738 2852 3.073356 TCCCTCCGTTCCTAAATGTTTGT 59.927 43.478 0.00 0.00 0.00 2.83
2739 2853 3.681593 TCCCTCCGTTCCTAAATGTTTG 58.318 45.455 0.00 0.00 0.00 2.93
2740 2854 3.329814 ACTCCCTCCGTTCCTAAATGTTT 59.670 43.478 0.00 0.00 0.00 2.83
2741 2855 2.910977 ACTCCCTCCGTTCCTAAATGTT 59.089 45.455 0.00 0.00 0.00 2.71
2742 2856 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2743 2857 4.344102 TGATACTCCCTCCGTTCCTAAATG 59.656 45.833 0.00 0.00 0.00 2.32
2744 2858 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
2745 2859 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
2746 2860 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
2747 2861 3.675348 TTGATACTCCCTCCGTTCCTA 57.325 47.619 0.00 0.00 0.00 2.94
2748 2862 2.500504 GTTTGATACTCCCTCCGTTCCT 59.499 50.000 0.00 0.00 0.00 3.36
2749 2863 2.235402 TGTTTGATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
2750 2864 3.604875 TGTTTGATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2751 2865 3.873910 CATGTTTGATACTCCCTCCGTT 58.126 45.455 0.00 0.00 0.00 4.44
2752 2866 2.420129 GCATGTTTGATACTCCCTCCGT 60.420 50.000 0.00 0.00 0.00 4.69
2753 2867 2.213499 GCATGTTTGATACTCCCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
2754 2868 3.281727 TGCATGTTTGATACTCCCTCC 57.718 47.619 0.00 0.00 0.00 4.30
2755 2869 4.454678 TCATGCATGTTTGATACTCCCTC 58.545 43.478 25.43 0.00 0.00 4.30
2756 2870 4.508551 TCATGCATGTTTGATACTCCCT 57.491 40.909 25.43 0.00 0.00 4.20
2757 2871 5.413833 CCTATCATGCATGTTTGATACTCCC 59.586 44.000 25.43 0.00 34.52 4.30
2758 2872 6.233434 TCCTATCATGCATGTTTGATACTCC 58.767 40.000 25.43 0.00 34.52 3.85
2759 2873 7.918536 ATCCTATCATGCATGTTTGATACTC 57.081 36.000 25.43 0.00 34.52 2.59
2760 2874 8.600668 ACTATCCTATCATGCATGTTTGATACT 58.399 33.333 25.43 12.83 34.52 2.12
2761 2875 8.783833 ACTATCCTATCATGCATGTTTGATAC 57.216 34.615 25.43 0.00 34.52 2.24
2888 3008 4.396166 GCATTATAGCCCATAGAAACGCAT 59.604 41.667 0.00 0.00 0.00 4.73
2971 3091 5.937540 TCCAAACACGTCTGAACATATGAAT 59.062 36.000 10.38 0.00 0.00 2.57
3023 3143 3.000041 CCGTCGAGATGGTTGAATTTCA 59.000 45.455 3.23 0.00 32.81 2.69
3261 3384 1.291877 ACGCACGATGAAGGTGAAGC 61.292 55.000 0.00 0.00 37.60 3.86
3429 3960 4.261197 GGTTGAAAGCACAATTCTTCGTCT 60.261 41.667 0.00 0.00 32.36 4.18
3487 4018 1.892474 GGATGGCTGCAAACCAAACTA 59.108 47.619 11.87 0.00 41.49 2.24
3503 4034 3.866651 AGGTGAGAATGAAACTCGGATG 58.133 45.455 0.00 0.00 0.00 3.51
3504 4035 3.118592 GGAGGTGAGAATGAAACTCGGAT 60.119 47.826 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.