Multiple sequence alignment - TraesCS6D01G102200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G102200 chr6D 100.000 3591 0 0 1 3591 65494916 65498506 0.000000e+00 6632
1 TraesCS6D01G102200 chr6A 93.917 1348 48 10 2254 3591 83259684 83258361 0.000000e+00 2004
2 TraesCS6D01G102200 chr6A 95.274 804 28 5 993 1793 83260911 83260115 0.000000e+00 1266
3 TraesCS6D01G102200 chr6A 89.378 386 27 6 1798 2172 83260065 83259683 1.170000e-129 473
4 TraesCS6D01G102200 chr6B 93.333 1350 53 13 2254 3591 140596490 140597814 0.000000e+00 1960
5 TraesCS6D01G102200 chr6B 94.059 808 34 4 991 1792 140595272 140596071 0.000000e+00 1214
6 TraesCS6D01G102200 chr6B 87.163 927 92 16 1265 2171 56045970 56046889 0.000000e+00 1027
7 TraesCS6D01G102200 chr6B 88.551 559 47 9 1 552 140593346 140593894 0.000000e+00 662
8 TraesCS6D01G102200 chr6B 84.874 238 31 4 664 896 352091782 352091545 5.990000e-58 235
9 TraesCS6D01G102200 chr6B 83.539 243 33 6 658 893 439062084 439062326 1.680000e-53 220
10 TraesCS6D01G102200 chr6B 94.059 101 4 2 2160 2260 106519120 106519218 6.210000e-33 152
11 TraesCS6D01G102200 chr6B 88.889 90 9 1 575 663 140595182 140595271 3.790000e-20 110
12 TraesCS6D01G102200 chr3A 87.702 927 89 13 1265 2172 748078548 748077628 0.000000e+00 1057
13 TraesCS6D01G102200 chr3A 87.608 928 88 15 1265 2172 746841263 746840343 0.000000e+00 1051
14 TraesCS6D01G102200 chr3A 86.516 927 98 14 1265 2171 424723080 424723999 0.000000e+00 994
15 TraesCS6D01G102200 chr3A 82.490 257 35 7 656 906 501225884 501225632 2.170000e-52 217
16 TraesCS6D01G102200 chr3A 80.193 207 23 12 2282 2486 748077584 748077394 4.830000e-29 139
17 TraesCS6D01G102200 chr3A 80.097 206 24 11 2282 2486 746840299 746840110 1.740000e-28 137
18 TraesCS6D01G102200 chr2A 87.379 927 90 16 1265 2171 72210496 72211415 0.000000e+00 1038
19 TraesCS6D01G102200 chr2A 80.687 233 38 5 671 897 2612740 2612509 1.330000e-39 174
20 TraesCS6D01G102200 chr2A 85.000 160 22 2 744 901 691765582 691765741 1.030000e-35 161
21 TraesCS6D01G102200 chr7B 86.839 927 97 11 1265 2172 44759445 44760365 0.000000e+00 1013
22 TraesCS6D01G102200 chr7B 83.817 241 32 7 661 896 614756451 614756213 4.670000e-54 222
23 TraesCS6D01G102200 chr7B 97.872 94 0 2 2168 2259 29304342 29304249 1.030000e-35 161
24 TraesCS6D01G102200 chr7B 80.676 207 23 11 2282 2486 406929875 406930066 1.040000e-30 145
25 TraesCS6D01G102200 chr7B 79.612 206 27 9 2282 2486 44760409 44760600 2.250000e-27 134
26 TraesCS6D01G102200 chr7A 86.825 926 96 15 1265 2171 148536314 148535396 0.000000e+00 1011
27 TraesCS6D01G102200 chr3B 86.516 927 99 14 1265 2172 526358598 526357679 0.000000e+00 996
28 TraesCS6D01G102200 chr3B 85.470 234 28 6 664 893 519399084 519399315 4.630000e-59 239
29 TraesCS6D01G102200 chr3B 84.681 235 31 5 671 900 716301505 716301739 2.790000e-56 230
30 TraesCS6D01G102200 chr3B 83.613 238 28 6 674 906 229307647 229307878 2.810000e-51 213
31 TraesCS6D01G102200 chr3B 82.213 253 38 5 658 905 493121878 493121628 1.010000e-50 211
32 TraesCS6D01G102200 chr3B 82.988 241 33 7 663 897 794395027 794395265 1.010000e-50 211
33 TraesCS6D01G102200 chr3B 97.872 94 1 1 2163 2256 752120183 752120275 1.030000e-35 161
34 TraesCS6D01G102200 chr3B 80.000 200 23 12 2290 2487 526357627 526357443 8.090000e-27 132
35 TraesCS6D01G102200 chr2B 86.069 926 99 16 1266 2172 103549535 103548621 0.000000e+00 968
36 TraesCS6D01G102200 chr4D 85.938 256 31 4 655 905 331709799 331710054 5.910000e-68 268
37 TraesCS6D01G102200 chr7D 85.153 229 29 5 671 894 339118810 339118582 2.790000e-56 230
38 TraesCS6D01G102200 chr1B 83.197 244 34 6 671 907 449553066 449552823 2.170000e-52 217
39 TraesCS6D01G102200 chr3D 97.872 94 1 1 2169 2262 146981123 146981031 1.030000e-35 161
40 TraesCS6D01G102200 chr5B 95.918 98 4 0 2169 2266 464321827 464321730 3.710000e-35 159
41 TraesCS6D01G102200 chr5A 95.960 99 3 1 2163 2261 64382098 64382195 3.710000e-35 159
42 TraesCS6D01G102200 chr5A 94.175 103 5 1 2162 2263 406990506 406990608 4.800000e-34 156
43 TraesCS6D01G102200 chr5A 91.818 110 4 4 2154 2262 112221131 112221026 8.030000e-32 148
44 TraesCS6D01G102200 chr5A 80.676 207 23 12 2282 2486 367607199 367607008 1.040000e-30 145
45 TraesCS6D01G102200 chr2D 95.098 102 4 1 2159 2260 564440792 564440692 3.710000e-35 159
46 TraesCS6D01G102200 chr1A 80.676 207 23 11 2282 2486 474169414 474169605 1.040000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G102200 chr6D 65494916 65498506 3590 False 6632.000000 6632 100.000000 1 3591 1 chr6D.!!$F1 3590
1 TraesCS6D01G102200 chr6A 83258361 83260911 2550 True 1247.666667 2004 92.856333 993 3591 3 chr6A.!!$R1 2598
2 TraesCS6D01G102200 chr6B 56045970 56046889 919 False 1027.000000 1027 87.163000 1265 2171 1 chr6B.!!$F1 906
3 TraesCS6D01G102200 chr6B 140593346 140597814 4468 False 986.500000 1960 91.208000 1 3591 4 chr6B.!!$F4 3590
4 TraesCS6D01G102200 chr3A 424723080 424723999 919 False 994.000000 994 86.516000 1265 2171 1 chr3A.!!$F1 906
5 TraesCS6D01G102200 chr3A 748077394 748078548 1154 True 598.000000 1057 83.947500 1265 2486 2 chr3A.!!$R3 1221
6 TraesCS6D01G102200 chr3A 746840110 746841263 1153 True 594.000000 1051 83.852500 1265 2486 2 chr3A.!!$R2 1221
7 TraesCS6D01G102200 chr2A 72210496 72211415 919 False 1038.000000 1038 87.379000 1265 2171 1 chr2A.!!$F1 906
8 TraesCS6D01G102200 chr7B 44759445 44760600 1155 False 573.500000 1013 83.225500 1265 2486 2 chr7B.!!$F2 1221
9 TraesCS6D01G102200 chr7A 148535396 148536314 918 True 1011.000000 1011 86.825000 1265 2171 1 chr7A.!!$R1 906
10 TraesCS6D01G102200 chr3B 526357443 526358598 1155 True 564.000000 996 83.258000 1265 2487 2 chr3B.!!$R2 1222
11 TraesCS6D01G102200 chr2B 103548621 103549535 914 True 968.000000 968 86.069000 1266 2172 1 chr2B.!!$R1 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 1987 0.036388 AGGCATGTCATCCGAACGTT 60.036 50.0 0.00 0.00 0.00 3.99 F
958 2231 0.038159 AGTAGTGAGCACGCTCCAAC 60.038 55.0 16.12 8.75 42.09 3.77 F
959 2232 0.038159 GTAGTGAGCACGCTCCAACT 60.038 55.0 16.12 15.08 42.09 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 3750 0.310854 GCCAAACAGCATATACCGCC 59.689 55.0 0.0 0.0 0.00 6.13 R
2550 3907 0.402121 AAGCTGTTCCAGTTCCTCCC 59.598 55.0 0.0 0.0 33.43 4.30 R
2869 4239 0.730840 ACATGACAGCACATCGCATG 59.269 50.0 0.0 0.0 46.13 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.336161 ACGCATTTAGAGAGTACTAGTTCAT 57.664 36.000 0.00 0.00 0.00 2.57
89 90 6.634805 AGGATAAGTGGCATGAATATAGTCG 58.365 40.000 0.00 0.00 0.00 4.18
90 91 6.211584 AGGATAAGTGGCATGAATATAGTCGT 59.788 38.462 0.00 0.00 0.00 4.34
91 92 6.531948 GGATAAGTGGCATGAATATAGTCGTC 59.468 42.308 0.00 0.00 0.00 4.20
94 99 6.260870 AGTGGCATGAATATAGTCGTCTAG 57.739 41.667 0.00 0.00 0.00 2.43
100 105 7.815068 GGCATGAATATAGTCGTCTAGATTTGT 59.185 37.037 10.19 1.72 37.94 2.83
132 137 2.564062 CAATGAGGGCACTCCAATGTTT 59.436 45.455 14.84 0.00 43.29 2.83
146 151 7.119699 CACTCCAATGTTTTCTTCTGCATACTA 59.880 37.037 0.00 0.00 0.00 1.82
153 158 3.543680 TCTTCTGCATACTAGCCAACC 57.456 47.619 0.00 0.00 0.00 3.77
156 161 3.266510 TCTGCATACTAGCCAACCAAG 57.733 47.619 0.00 0.00 0.00 3.61
181 186 5.273944 CAAGCAATTTCGGCCTTAGTTATC 58.726 41.667 0.00 0.00 0.00 1.75
217 222 2.618241 TGCAGCTTAGTTGTGGTTCAAG 59.382 45.455 0.00 0.00 36.66 3.02
226 231 7.043325 GCTTAGTTGTGGTTCAAGATACTATCG 60.043 40.741 0.00 0.00 36.66 2.92
230 235 4.081365 TGTGGTTCAAGATACTATCGCCAA 60.081 41.667 0.00 0.00 0.00 4.52
239 244 1.717032 ACTATCGCCAAGGCTCCATA 58.283 50.000 9.73 2.39 39.32 2.74
253 258 5.086104 GGCTCCATAGGCTATAAATCGAA 57.914 43.478 6.72 0.00 44.73 3.71
301 308 6.554419 TCAAGGAGATTATTGAAAACGCATG 58.446 36.000 0.00 0.00 32.66 4.06
305 312 6.319658 AGGAGATTATTGAAAACGCATGATGT 59.680 34.615 0.00 0.00 0.00 3.06
307 314 7.087409 AGATTATTGAAAACGCATGATGTGA 57.913 32.000 13.60 0.00 0.00 3.58
320 327 4.598062 CATGATGTGATGTGATGTGAAGC 58.402 43.478 0.00 0.00 0.00 3.86
324 331 1.129251 GTGATGTGATGTGAAGCCACG 59.871 52.381 0.00 0.00 46.06 4.94
331 338 2.093553 TGATGTGAAGCCACGATGATGA 60.094 45.455 0.00 0.00 46.06 2.92
347 354 7.699391 CACGATGATGACTTTGCTTGATATTTT 59.301 33.333 0.00 0.00 0.00 1.82
348 355 8.892723 ACGATGATGACTTTGCTTGATATTTTA 58.107 29.630 0.00 0.00 0.00 1.52
372 379 4.221703 TCCTTTTCTTTTTGCAGTGGTTGA 59.778 37.500 0.00 0.00 0.00 3.18
390 397 4.551388 GTTGATGCTTACTCCTCGATAGG 58.449 47.826 0.00 0.00 45.21 2.57
410 417 1.589803 CTCAATGCTCATGATGCCGA 58.410 50.000 12.62 7.38 0.00 5.54
421 428 0.322366 TGATGCCGATGCCACTTCAA 60.322 50.000 0.00 0.00 36.33 2.69
431 438 4.619973 GATGCCACTTCAATGTTGTTGAA 58.380 39.130 3.53 3.53 36.98 2.69
432 439 4.462508 TGCCACTTCAATGTTGTTGAAA 57.537 36.364 4.95 0.00 37.89 2.69
434 441 4.869297 TGCCACTTCAATGTTGTTGAAAAG 59.131 37.500 4.95 0.00 37.89 2.27
435 442 4.869861 GCCACTTCAATGTTGTTGAAAAGT 59.130 37.500 4.95 0.00 37.89 2.66
436 443 5.351189 GCCACTTCAATGTTGTTGAAAAGTT 59.649 36.000 4.95 0.00 37.89 2.66
437 444 6.533367 GCCACTTCAATGTTGTTGAAAAGTTA 59.467 34.615 4.95 0.00 37.89 2.24
438 445 7.464045 GCCACTTCAATGTTGTTGAAAAGTTAC 60.464 37.037 4.95 0.00 37.89 2.50
439 446 7.253618 CCACTTCAATGTTGTTGAAAAGTTACG 60.254 37.037 4.95 0.00 37.89 3.18
440 447 6.750039 ACTTCAATGTTGTTGAAAAGTTACGG 59.250 34.615 4.95 0.00 37.89 4.02
449 456 2.158726 TGAAAAGTTACGGTGCCTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
470 477 5.474876 CCTTTTGTTCTATGCCTCTTTCACT 59.525 40.000 0.00 0.00 0.00 3.41
472 479 4.890158 TGTTCTATGCCTCTTTCACTGA 57.110 40.909 0.00 0.00 0.00 3.41
482 489 2.103094 CTCTTTCACTGACCTCACACCA 59.897 50.000 0.00 0.00 0.00 4.17
509 516 9.823098 TTGAAACATTTGATCACTTTGTTTTTG 57.177 25.926 21.51 4.39 39.77 2.44
513 520 7.242783 ACATTTGATCACTTTGTTTTTGCAAC 58.757 30.769 0.00 0.00 0.00 4.17
516 523 6.586868 TGATCACTTTGTTTTTGCAACATC 57.413 33.333 0.00 0.00 0.00 3.06
519 526 5.108517 TCACTTTGTTTTTGCAACATCTCC 58.891 37.500 0.00 0.00 0.00 3.71
559 567 6.639632 TTGAATCAAAGAACAAAGAGGGAG 57.360 37.500 0.00 0.00 0.00 4.30
560 568 5.694995 TGAATCAAAGAACAAAGAGGGAGT 58.305 37.500 0.00 0.00 0.00 3.85
573 581 2.287829 GGGAGTCCCTCGTTGATGT 58.712 57.895 22.04 0.00 41.34 3.06
581 1854 4.039973 AGTCCCTCGTTGATGTTTTACTCA 59.960 41.667 0.00 0.00 0.00 3.41
598 1871 2.305927 ACTCAAACAGATCCCCACGATT 59.694 45.455 0.00 0.00 0.00 3.34
604 1877 0.106167 AGATCCCCACGATTCGGAGA 60.106 55.000 11.29 1.85 0.00 3.71
612 1885 3.492656 CCCACGATTCGGAGATTGTACAT 60.493 47.826 11.29 0.00 35.04 2.29
642 1915 6.981559 GGTCAGCAACCTTAAATAAAACACAA 59.018 34.615 1.21 0.00 45.45 3.33
644 1917 8.487176 GTCAGCAACCTTAAATAAAACACAATG 58.513 33.333 0.00 0.00 0.00 2.82
646 1919 8.487176 CAGCAACCTTAAATAAAACACAATGTC 58.513 33.333 0.00 0.00 0.00 3.06
651 1924 7.289084 ACCTTAAATAAAACACAATGTCACCCT 59.711 33.333 0.00 0.00 0.00 4.34
653 1926 9.541143 CTTAAATAAAACACAATGTCACCCTTT 57.459 29.630 0.00 0.00 0.00 3.11
679 1952 6.605471 AAAACAAGGACCTTGATAAATCCC 57.395 37.500 35.69 0.00 43.42 3.85
680 1953 3.886123 ACAAGGACCTTGATAAATCCCG 58.114 45.455 35.69 9.93 43.42 5.14
681 1954 3.521937 ACAAGGACCTTGATAAATCCCGA 59.478 43.478 35.69 0.00 43.42 5.14
682 1955 4.018779 ACAAGGACCTTGATAAATCCCGAA 60.019 41.667 35.69 0.00 43.42 4.30
683 1956 4.152284 AGGACCTTGATAAATCCCGAAC 57.848 45.455 0.00 0.00 30.99 3.95
684 1957 2.870411 GGACCTTGATAAATCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
685 1958 3.528532 GACCTTGATAAATCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
686 1959 3.937079 GACCTTGATAAATCCCGAACGTT 59.063 43.478 0.00 0.00 0.00 3.99
687 1960 3.937079 ACCTTGATAAATCCCGAACGTTC 59.063 43.478 18.47 18.47 0.00 3.95
698 1971 2.430828 CGAACGTTCGGATTTTAGGC 57.569 50.000 36.53 4.05 46.30 3.93
699 1972 1.727880 CGAACGTTCGGATTTTAGGCA 59.272 47.619 36.53 0.00 46.30 4.75
700 1973 2.350498 CGAACGTTCGGATTTTAGGCAT 59.650 45.455 36.53 0.00 46.30 4.40
701 1974 3.680789 GAACGTTCGGATTTTAGGCATG 58.319 45.455 13.36 0.00 0.00 4.06
702 1975 2.706890 ACGTTCGGATTTTAGGCATGT 58.293 42.857 0.00 0.00 0.00 3.21
703 1976 2.676342 ACGTTCGGATTTTAGGCATGTC 59.324 45.455 0.00 0.00 0.00 3.06
704 1977 2.675844 CGTTCGGATTTTAGGCATGTCA 59.324 45.455 0.00 0.00 0.00 3.58
705 1978 3.312421 CGTTCGGATTTTAGGCATGTCAT 59.688 43.478 0.00 0.00 0.00 3.06
706 1979 4.552767 CGTTCGGATTTTAGGCATGTCATC 60.553 45.833 0.00 0.00 0.00 2.92
707 1980 3.476552 TCGGATTTTAGGCATGTCATCC 58.523 45.455 0.00 1.92 0.00 3.51
708 1981 2.224079 CGGATTTTAGGCATGTCATCCG 59.776 50.000 18.72 18.72 45.15 4.18
709 1982 3.476552 GGATTTTAGGCATGTCATCCGA 58.523 45.455 0.00 0.00 0.00 4.55
710 1983 3.882888 GGATTTTAGGCATGTCATCCGAA 59.117 43.478 0.00 0.00 0.00 4.30
711 1984 4.261197 GGATTTTAGGCATGTCATCCGAAC 60.261 45.833 0.00 0.00 0.00 3.95
712 1985 1.934589 TTAGGCATGTCATCCGAACG 58.065 50.000 0.00 0.00 0.00 3.95
713 1986 0.821517 TAGGCATGTCATCCGAACGT 59.178 50.000 0.00 0.00 0.00 3.99
714 1987 0.036388 AGGCATGTCATCCGAACGTT 60.036 50.000 0.00 0.00 0.00 3.99
715 1988 0.802494 GGCATGTCATCCGAACGTTT 59.198 50.000 0.46 0.00 0.00 3.60
716 1989 1.199097 GGCATGTCATCCGAACGTTTT 59.801 47.619 0.46 0.00 0.00 2.43
717 1990 2.351350 GGCATGTCATCCGAACGTTTTT 60.351 45.455 0.46 0.00 0.00 1.94
746 2019 4.853924 AACTTTAGTTGATGCAAGGTGG 57.146 40.909 0.00 0.00 36.80 4.61
747 2020 2.558359 ACTTTAGTTGATGCAAGGTGGC 59.442 45.455 0.00 0.00 0.00 5.01
748 2021 5.473969 AACTTTAGTTGATGCAAGGTGGCA 61.474 41.667 0.00 0.00 41.75 4.92
749 2022 6.907578 AACTTTAGTTGATGCAAGGTGGCAA 61.908 40.000 0.00 0.00 41.24 4.52
750 2023 8.835440 AACTTTAGTTGATGCAAGGTGGCAAC 62.835 42.308 0.00 0.00 41.24 4.17
756 2029 2.065899 TGCAAGGTGGCAACTTTAGT 57.934 45.000 16.67 0.00 41.65 2.24
757 2030 2.383855 TGCAAGGTGGCAACTTTAGTT 58.616 42.857 16.67 0.00 41.65 2.24
773 2046 7.404139 ACTTTAGTTGTTAAGACATGACGAC 57.596 36.000 0.00 0.00 35.29 4.34
774 2047 7.208080 ACTTTAGTTGTTAAGACATGACGACT 58.792 34.615 0.00 4.64 40.28 4.18
775 2048 7.709613 ACTTTAGTTGTTAAGACATGACGACTT 59.290 33.333 9.08 6.95 38.58 3.01
776 2049 8.428186 TTTAGTTGTTAAGACATGACGACTTT 57.572 30.769 9.08 0.00 38.58 2.66
777 2050 6.287107 AGTTGTTAAGACATGACGACTTTG 57.713 37.500 0.00 0.00 35.08 2.77
778 2051 5.815740 AGTTGTTAAGACATGACGACTTTGT 59.184 36.000 0.00 0.00 35.08 2.83
779 2052 6.315393 AGTTGTTAAGACATGACGACTTTGTT 59.685 34.615 0.00 0.00 35.08 2.83
780 2053 6.281848 TGTTAAGACATGACGACTTTGTTC 57.718 37.500 0.00 0.00 31.82 3.18
781 2054 6.046593 TGTTAAGACATGACGACTTTGTTCT 58.953 36.000 0.00 0.00 31.82 3.01
782 2055 7.204604 TGTTAAGACATGACGACTTTGTTCTA 58.795 34.615 0.00 0.00 31.82 2.10
783 2056 7.707464 TGTTAAGACATGACGACTTTGTTCTAA 59.293 33.333 0.00 0.00 31.82 2.10
784 2057 8.709646 GTTAAGACATGACGACTTTGTTCTAAT 58.290 33.333 0.00 0.00 31.82 1.73
785 2058 7.730364 AAGACATGACGACTTTGTTCTAATT 57.270 32.000 0.00 0.00 0.00 1.40
786 2059 8.827177 AAGACATGACGACTTTGTTCTAATTA 57.173 30.769 0.00 0.00 0.00 1.40
787 2060 9.436957 AAGACATGACGACTTTGTTCTAATTAT 57.563 29.630 0.00 0.00 0.00 1.28
788 2061 9.436957 AGACATGACGACTTTGTTCTAATTATT 57.563 29.630 0.00 0.00 0.00 1.40
817 2090 6.772770 ACAAAATTATTACGTTTGCCAACC 57.227 33.333 0.00 0.00 36.01 3.77
818 2091 6.517605 ACAAAATTATTACGTTTGCCAACCT 58.482 32.000 0.00 0.00 36.01 3.50
819 2092 6.643360 ACAAAATTATTACGTTTGCCAACCTC 59.357 34.615 0.00 0.00 36.01 3.85
820 2093 4.609691 ATTATTACGTTTGCCAACCTCG 57.390 40.909 0.00 0.00 0.00 4.63
821 2094 1.886886 ATTACGTTTGCCAACCTCGT 58.113 45.000 0.00 6.70 38.30 4.18
822 2095 0.938713 TTACGTTTGCCAACCTCGTG 59.061 50.000 0.00 0.00 36.24 4.35
823 2096 0.179078 TACGTTTGCCAACCTCGTGT 60.179 50.000 0.00 0.00 36.24 4.49
824 2097 1.010125 CGTTTGCCAACCTCGTGTG 60.010 57.895 0.00 0.00 0.00 3.82
825 2098 1.433053 CGTTTGCCAACCTCGTGTGA 61.433 55.000 0.00 0.00 0.00 3.58
826 2099 0.736053 GTTTGCCAACCTCGTGTGAA 59.264 50.000 0.00 0.00 0.00 3.18
827 2100 0.736053 TTTGCCAACCTCGTGTGAAC 59.264 50.000 0.00 0.00 0.00 3.18
828 2101 0.107410 TTGCCAACCTCGTGTGAACT 60.107 50.000 0.00 0.00 0.00 3.01
829 2102 0.753867 TGCCAACCTCGTGTGAACTA 59.246 50.000 0.00 0.00 0.00 2.24
830 2103 1.139256 TGCCAACCTCGTGTGAACTAA 59.861 47.619 0.00 0.00 0.00 2.24
831 2104 2.215196 GCCAACCTCGTGTGAACTAAA 58.785 47.619 0.00 0.00 0.00 1.85
832 2105 2.223377 GCCAACCTCGTGTGAACTAAAG 59.777 50.000 0.00 0.00 0.00 1.85
833 2106 3.463944 CCAACCTCGTGTGAACTAAAGT 58.536 45.455 0.00 0.00 0.00 2.66
834 2107 3.875134 CCAACCTCGTGTGAACTAAAGTT 59.125 43.478 0.00 0.00 41.64 2.66
835 2108 4.260620 CCAACCTCGTGTGAACTAAAGTTG 60.261 45.833 0.00 0.00 38.56 3.16
836 2109 4.133013 ACCTCGTGTGAACTAAAGTTGT 57.867 40.909 0.00 0.00 38.56 3.32
837 2110 4.117685 ACCTCGTGTGAACTAAAGTTGTC 58.882 43.478 0.00 0.00 38.56 3.18
838 2111 4.116961 CCTCGTGTGAACTAAAGTTGTCA 58.883 43.478 0.00 0.00 38.56 3.58
839 2112 4.750098 CCTCGTGTGAACTAAAGTTGTCAT 59.250 41.667 0.00 0.00 38.56 3.06
840 2113 5.924254 CCTCGTGTGAACTAAAGTTGTCATA 59.076 40.000 0.00 0.00 38.56 2.15
841 2114 6.422701 CCTCGTGTGAACTAAAGTTGTCATAA 59.577 38.462 0.00 0.00 38.56 1.90
842 2115 7.042321 CCTCGTGTGAACTAAAGTTGTCATAAA 60.042 37.037 0.00 0.00 38.56 1.40
843 2116 8.199176 TCGTGTGAACTAAAGTTGTCATAAAA 57.801 30.769 0.00 0.00 38.56 1.52
844 2117 8.666573 TCGTGTGAACTAAAGTTGTCATAAAAA 58.333 29.630 0.00 0.00 38.56 1.94
862 2135 4.816786 AAAAACATTCAAACTGCCATGC 57.183 36.364 0.00 0.00 0.00 4.06
863 2136 3.756933 AAACATTCAAACTGCCATGCT 57.243 38.095 0.00 0.00 0.00 3.79
864 2137 3.756933 AACATTCAAACTGCCATGCTT 57.243 38.095 0.00 0.00 0.00 3.91
865 2138 4.870123 AACATTCAAACTGCCATGCTTA 57.130 36.364 0.00 0.00 0.00 3.09
866 2139 4.870123 ACATTCAAACTGCCATGCTTAA 57.130 36.364 0.00 0.00 0.00 1.85
867 2140 5.212532 ACATTCAAACTGCCATGCTTAAA 57.787 34.783 0.00 0.00 0.00 1.52
868 2141 5.609423 ACATTCAAACTGCCATGCTTAAAA 58.391 33.333 0.00 0.00 0.00 1.52
869 2142 6.232692 ACATTCAAACTGCCATGCTTAAAAT 58.767 32.000 0.00 0.00 0.00 1.82
870 2143 6.369615 ACATTCAAACTGCCATGCTTAAAATC 59.630 34.615 0.00 0.00 0.00 2.17
871 2144 4.819769 TCAAACTGCCATGCTTAAAATCC 58.180 39.130 0.00 0.00 0.00 3.01
872 2145 3.508744 AACTGCCATGCTTAAAATCCG 57.491 42.857 0.00 0.00 0.00 4.18
873 2146 2.722094 ACTGCCATGCTTAAAATCCGA 58.278 42.857 0.00 0.00 0.00 4.55
874 2147 3.088532 ACTGCCATGCTTAAAATCCGAA 58.911 40.909 0.00 0.00 0.00 4.30
875 2148 3.119495 ACTGCCATGCTTAAAATCCGAAC 60.119 43.478 0.00 0.00 0.00 3.95
876 2149 2.159448 TGCCATGCTTAAAATCCGAACG 60.159 45.455 0.00 0.00 0.00 3.95
877 2150 2.159435 GCCATGCTTAAAATCCGAACGT 60.159 45.455 0.00 0.00 0.00 3.99
878 2151 3.672241 GCCATGCTTAAAATCCGAACGTT 60.672 43.478 0.00 0.00 0.00 3.99
879 2152 4.095610 CCATGCTTAAAATCCGAACGTTC 58.904 43.478 18.47 18.47 0.00 3.95
894 2167 6.697193 CGAACGTTCGGAATTTATCATTTC 57.303 37.500 36.53 2.37 46.30 2.17
895 2168 5.675444 CGAACGTTCGGAATTTATCATTTCC 59.325 40.000 36.53 2.01 46.30 3.13
896 2169 6.503589 AACGTTCGGAATTTATCATTTCCA 57.496 33.333 0.00 0.00 41.25 3.53
897 2170 6.503589 ACGTTCGGAATTTATCATTTCCAA 57.496 33.333 0.00 0.00 41.25 3.53
898 2171 6.915349 ACGTTCGGAATTTATCATTTCCAAA 58.085 32.000 0.00 0.00 41.25 3.28
899 2172 7.371936 ACGTTCGGAATTTATCATTTCCAAAA 58.628 30.769 0.00 0.00 41.25 2.44
900 2173 7.868415 ACGTTCGGAATTTATCATTTCCAAAAA 59.132 29.630 0.00 0.00 41.25 1.94
921 2194 7.617041 AAAAATAATGTCTAGACTGAGCCAC 57.383 36.000 23.01 0.00 0.00 5.01
922 2195 4.946478 ATAATGTCTAGACTGAGCCACC 57.054 45.455 23.01 0.00 0.00 4.61
923 2196 1.490574 ATGTCTAGACTGAGCCACCC 58.509 55.000 23.01 0.00 0.00 4.61
924 2197 0.409876 TGTCTAGACTGAGCCACCCT 59.590 55.000 23.01 0.00 0.00 4.34
925 2198 1.107945 GTCTAGACTGAGCCACCCTC 58.892 60.000 15.91 0.00 41.15 4.30
948 2221 0.466124 GGGACCCATCAGTAGTGAGC 59.534 60.000 5.33 0.00 35.66 4.26
949 2222 1.195115 GGACCCATCAGTAGTGAGCA 58.805 55.000 6.39 0.00 35.66 4.26
950 2223 1.134670 GGACCCATCAGTAGTGAGCAC 60.135 57.143 6.39 0.00 35.66 4.40
951 2224 0.532573 ACCCATCAGTAGTGAGCACG 59.467 55.000 6.39 0.00 35.66 5.34
952 2225 0.807667 CCCATCAGTAGTGAGCACGC 60.808 60.000 6.39 0.00 35.66 5.34
953 2226 0.174389 CCATCAGTAGTGAGCACGCT 59.826 55.000 6.39 2.04 35.66 5.07
954 2227 1.554392 CATCAGTAGTGAGCACGCTC 58.446 55.000 12.17 12.17 43.01 5.03
955 2228 0.457851 ATCAGTAGTGAGCACGCTCC 59.542 55.000 16.12 7.82 42.09 4.70
956 2229 0.893727 TCAGTAGTGAGCACGCTCCA 60.894 55.000 16.12 2.20 42.09 3.86
957 2230 0.038251 CAGTAGTGAGCACGCTCCAA 60.038 55.000 16.12 0.00 42.09 3.53
958 2231 0.038159 AGTAGTGAGCACGCTCCAAC 60.038 55.000 16.12 8.75 42.09 3.77
959 2232 0.038159 GTAGTGAGCACGCTCCAACT 60.038 55.000 16.12 15.08 42.09 3.16
960 2233 0.038251 TAGTGAGCACGCTCCAACTG 60.038 55.000 16.12 0.00 42.09 3.16
961 2234 2.666190 TGAGCACGCTCCAACTGC 60.666 61.111 16.12 0.00 42.09 4.40
962 2235 2.358003 GAGCACGCTCCAACTGCT 60.358 61.111 7.86 0.00 44.04 4.24
963 2236 2.358003 AGCACGCTCCAACTGCTC 60.358 61.111 0.00 0.00 36.50 4.26
964 2237 3.782244 GCACGCTCCAACTGCTCG 61.782 66.667 0.00 0.00 0.00 5.03
965 2238 3.782244 CACGCTCCAACTGCTCGC 61.782 66.667 0.00 0.00 0.00 5.03
981 2254 4.114997 GCCCGGCCACGTCATTTG 62.115 66.667 2.24 0.00 38.78 2.32
982 2255 3.439540 CCCGGCCACGTCATTTGG 61.440 66.667 2.24 0.00 38.78 3.28
983 2256 2.359354 CCGGCCACGTCATTTGGA 60.359 61.111 2.24 0.00 36.02 3.53
984 2257 2.686816 CCGGCCACGTCATTTGGAC 61.687 63.158 2.24 0.00 43.36 4.02
985 2258 2.686816 CGGCCACGTCATTTGGACC 61.687 63.158 2.24 0.00 43.95 4.46
986 2259 2.340328 GGCCACGTCATTTGGACCC 61.340 63.158 0.00 0.00 43.95 4.46
987 2260 1.602323 GCCACGTCATTTGGACCCA 60.602 57.895 0.00 0.00 43.95 4.51
988 2261 1.862602 GCCACGTCATTTGGACCCAC 61.863 60.000 0.00 0.00 43.95 4.61
989 2262 1.241315 CCACGTCATTTGGACCCACC 61.241 60.000 0.00 0.00 43.95 4.61
1033 2306 0.855349 CCAGATACGCATCTTCGTGC 59.145 55.000 0.00 0.00 43.21 5.34
1053 2326 3.011760 GCGTTCGGCCTCTGTTTCG 62.012 63.158 0.00 0.00 34.80 3.46
1056 2329 3.894547 TTCGGCCTCTGTTTCGCCC 62.895 63.158 0.00 0.00 39.66 6.13
1066 2339 1.078356 GTTTCGCCCTCCCCTCTTC 60.078 63.158 0.00 0.00 0.00 2.87
1335 2613 1.372997 TCGCTCTTCTCACGTTGCC 60.373 57.895 0.00 0.00 0.00 4.52
1339 2617 1.604278 GCTCTTCTCACGTTGCCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
1474 2755 9.556030 GTATGCTTGGTGTTAATTTTCTTAGTC 57.444 33.333 0.00 0.00 0.00 2.59
1477 2758 7.500892 TGCTTGGTGTTAATTTTCTTAGTCTGA 59.499 33.333 0.00 0.00 0.00 3.27
1479 2760 7.416154 TGGTGTTAATTTTCTTAGTCTGACG 57.584 36.000 1.52 0.00 0.00 4.35
1582 2863 2.195567 TCTGTGCTGCAGGTTTGGC 61.196 57.895 17.12 0.29 45.08 4.52
1666 2947 0.957395 AACTGTTGGCATCTCGCTGG 60.957 55.000 0.00 0.00 41.91 4.85
1816 3143 1.405821 GAGGCACGCAGATAGTACTGT 59.594 52.381 5.39 0.00 39.73 3.55
1837 3164 8.514330 ACTGTTATCAAGTGGTTTTGTTCTAA 57.486 30.769 0.00 0.00 0.00 2.10
1851 3178 6.385649 TTTGTTCTAACATGAAAGACCACC 57.614 37.500 0.00 0.00 38.95 4.61
1863 3191 2.683211 AGACCACCTTTCTTTGGCAT 57.317 45.000 0.00 0.00 36.20 4.40
1882 3210 4.210955 GGCATCTTAGAGAGCAATTCTTCG 59.789 45.833 10.73 0.00 35.87 3.79
1952 3288 4.814147 CGGATATGATCGCCTATGCATAT 58.186 43.478 6.92 0.00 36.83 1.78
1988 3325 2.836981 GGATGATCCTGACCTCTATGGG 59.163 54.545 3.71 0.00 35.02 4.00
2010 3347 4.142093 GGGAATGGGATTTTGATGTGAGTG 60.142 45.833 0.00 0.00 0.00 3.51
2079 3417 2.660490 CAAACAAACACCGCCACTATG 58.340 47.619 0.00 0.00 0.00 2.23
2080 3418 1.243902 AACAAACACCGCCACTATGG 58.756 50.000 0.00 0.00 41.55 2.74
2175 3515 9.688592 AAATTACACGTATAATGCTACTACTCC 57.311 33.333 0.00 0.00 0.00 3.85
2176 3516 5.702349 ACACGTATAATGCTACTACTCCC 57.298 43.478 0.00 0.00 0.00 4.30
2177 3517 5.383476 ACACGTATAATGCTACTACTCCCT 58.617 41.667 0.00 0.00 0.00 4.20
2178 3518 5.472820 ACACGTATAATGCTACTACTCCCTC 59.527 44.000 0.00 0.00 0.00 4.30
2179 3519 5.706369 CACGTATAATGCTACTACTCCCTCT 59.294 44.000 0.00 0.00 0.00 3.69
2180 3520 5.706369 ACGTATAATGCTACTACTCCCTCTG 59.294 44.000 0.00 0.00 0.00 3.35
2181 3521 5.706369 CGTATAATGCTACTACTCCCTCTGT 59.294 44.000 0.00 0.00 0.00 3.41
2182 3522 6.128227 CGTATAATGCTACTACTCCCTCTGTC 60.128 46.154 0.00 0.00 0.00 3.51
2183 3523 2.438800 TGCTACTACTCCCTCTGTCC 57.561 55.000 0.00 0.00 0.00 4.02
2184 3524 1.063867 TGCTACTACTCCCTCTGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
2185 3525 1.063867 GCTACTACTCCCTCTGTCCCA 60.064 57.143 0.00 0.00 0.00 4.37
2186 3526 2.425102 GCTACTACTCCCTCTGTCCCAT 60.425 54.545 0.00 0.00 0.00 4.00
2187 3527 3.181431 GCTACTACTCCCTCTGTCCCATA 60.181 52.174 0.00 0.00 0.00 2.74
2188 3528 4.691935 GCTACTACTCCCTCTGTCCCATAA 60.692 50.000 0.00 0.00 0.00 1.90
2189 3529 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2190 3530 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2191 3531 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
2192 3532 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
2193 3533 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
2194 3534 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
2195 3535 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2196 3536 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
2197 3537 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
2198 3538 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
2199 3539 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
2200 3540 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
2201 3541 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
2202 3542 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
2203 3543 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
2204 3544 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
2205 3545 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
2206 3546 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2207 3547 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2208 3548 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2215 3555 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
2216 3556 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
2217 3557 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
2230 3570 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2231 3571 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2232 3572 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2233 3573 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2234 3574 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
2235 3575 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
2236 3576 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
2242 3582 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2243 3583 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2244 3584 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2245 3585 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
2246 3586 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2247 3587 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2248 3588 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2249 3589 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2250 3590 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2251 3591 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2252 3592 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2253 3593 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2254 3594 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2374 3731 8.757982 ATTTAATGAAGTTCTGAGTATGCCAT 57.242 30.769 4.17 0.00 0.00 4.40
2389 3746 0.383231 GCCATTATGTGCTGCTCACC 59.617 55.000 6.54 0.00 45.03 4.02
2390 3747 0.659427 CCATTATGTGCTGCTCACCG 59.341 55.000 6.54 0.00 45.03 4.94
2391 3748 0.659427 CATTATGTGCTGCTCACCGG 59.341 55.000 6.54 0.00 45.03 5.28
2392 3749 0.253044 ATTATGTGCTGCTCACCGGT 59.747 50.000 0.00 0.00 45.03 5.28
2393 3750 0.673333 TTATGTGCTGCTCACCGGTG 60.673 55.000 29.26 29.26 45.03 4.94
2394 3751 2.520465 TATGTGCTGCTCACCGGTGG 62.520 60.000 33.40 23.98 45.03 4.61
2528 3885 6.798427 AGAAAGTGCATCTGAAGGACTATA 57.202 37.500 7.47 0.00 36.61 1.31
2530 3887 7.800092 AGAAAGTGCATCTGAAGGACTATATT 58.200 34.615 7.47 0.00 36.61 1.28
2739 4108 9.927668 AATAGTTTTCATATTTTGTGACCAAGG 57.072 29.630 0.00 0.00 0.00 3.61
2754 4123 0.868406 CAAGGCTCGAGGTGTTCAAC 59.132 55.000 15.58 0.00 0.00 3.18
2784 4154 4.335400 TTTTCTGTGCTTTTTGGATCCC 57.665 40.909 9.90 0.00 0.00 3.85
2869 4239 1.911057 ACTAGCCCTTTTGCCTGTTC 58.089 50.000 0.00 0.00 0.00 3.18
2870 4240 1.144913 ACTAGCCCTTTTGCCTGTTCA 59.855 47.619 0.00 0.00 0.00 3.18
2874 4244 0.388907 CCCTTTTGCCTGTTCATGCG 60.389 55.000 0.00 0.00 0.00 4.73
2968 4339 9.599322 CAATGAACAGTTAATAAGTTCTGTCAC 57.401 33.333 14.55 5.92 41.56 3.67
3080 4451 4.398988 TCACATTTCCAGTATGCCATGAAC 59.601 41.667 0.00 0.00 31.97 3.18
3155 4526 9.567776 TTTGATAAGACCAAACAGTAGATTGAA 57.432 29.630 0.00 0.00 29.78 2.69
3156 4527 8.547967 TGATAAGACCAAACAGTAGATTGAAC 57.452 34.615 0.00 0.00 29.78 3.18
3157 4528 7.606456 TGATAAGACCAAACAGTAGATTGAACC 59.394 37.037 0.00 0.00 29.78 3.62
3158 4529 5.304686 AGACCAAACAGTAGATTGAACCA 57.695 39.130 0.00 0.00 29.78 3.67
3159 4530 5.690865 AGACCAAACAGTAGATTGAACCAA 58.309 37.500 0.00 0.00 29.78 3.67
3161 4532 6.777580 AGACCAAACAGTAGATTGAACCAAAT 59.222 34.615 0.00 0.00 29.78 2.32
3162 4533 7.287696 AGACCAAACAGTAGATTGAACCAAATT 59.712 33.333 0.00 0.00 29.78 1.82
3163 4534 7.791029 ACCAAACAGTAGATTGAACCAAATTT 58.209 30.769 0.00 0.00 29.78 1.82
3164 4535 7.926018 ACCAAACAGTAGATTGAACCAAATTTC 59.074 33.333 0.00 0.00 29.78 2.17
3165 4536 7.925483 CCAAACAGTAGATTGAACCAAATTTCA 59.075 33.333 0.00 0.00 33.55 2.69
3176 4549 6.321717 TGAACCAAATTTCATATCGCAGTTC 58.678 36.000 0.00 0.00 30.29 3.01
3179 4552 5.360714 ACCAAATTTCATATCGCAGTTCCAT 59.639 36.000 0.00 0.00 0.00 3.41
3180 4553 5.916883 CCAAATTTCATATCGCAGTTCCATC 59.083 40.000 0.00 0.00 0.00 3.51
3304 4679 9.553064 AACATACTATCTTCAGATTTGCCTAAG 57.447 33.333 0.00 0.00 36.05 2.18
3375 4750 7.488471 CCCTACTACTCGTTTCAACTGATAAAG 59.512 40.741 0.00 0.00 0.00 1.85
3423 4798 4.328118 AATCTGAGGAGCATTTTCCCTT 57.672 40.909 0.00 0.00 38.02 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.272545 TGAACTAGTACTCTCTAAATGCGTTA 57.727 34.615 0.00 0.00 0.00 3.18
12 13 9.388346 CTAATGAACTAGTACTCTCTAAATGCG 57.612 37.037 0.00 0.00 0.00 4.73
35 36 4.595781 ACAAGACATGTCCCTGGTTACTAA 59.404 41.667 22.21 0.00 37.96 2.24
64 65 7.396339 ACGACTATATTCATGCCACTTATCCTA 59.604 37.037 0.00 0.00 0.00 2.94
66 67 6.398918 ACGACTATATTCATGCCACTTATCC 58.601 40.000 0.00 0.00 0.00 2.59
89 90 5.003804 TGGCTGGAAAAGACAAATCTAGAC 58.996 41.667 0.00 0.00 42.72 2.59
90 91 5.241403 TGGCTGGAAAAGACAAATCTAGA 57.759 39.130 0.00 0.00 42.72 2.43
100 105 2.220653 CCCTCATTGGCTGGAAAAGA 57.779 50.000 0.00 0.00 0.00 2.52
122 127 6.506500 AGTATGCAGAAGAAAACATTGGAG 57.493 37.500 0.00 0.00 0.00 3.86
132 137 3.263170 TGGTTGGCTAGTATGCAGAAGAA 59.737 43.478 0.00 0.00 34.04 2.52
153 158 1.015607 GGCCGAAATTGCTTGCCTTG 61.016 55.000 6.60 0.00 39.05 3.61
156 161 0.530288 TAAGGCCGAAATTGCTTGCC 59.470 50.000 5.84 5.84 42.48 4.52
161 166 4.497507 GGTGATAACTAAGGCCGAAATTGC 60.498 45.833 0.00 0.00 0.00 3.56
162 167 4.036380 GGGTGATAACTAAGGCCGAAATTG 59.964 45.833 0.00 0.00 0.00 2.32
217 222 1.618837 TGGAGCCTTGGCGATAGTATC 59.381 52.381 5.95 0.00 39.35 2.24
226 231 0.695347 ATAGCCTATGGAGCCTTGGC 59.305 55.000 2.97 2.97 43.52 4.52
230 235 4.353777 TCGATTTATAGCCTATGGAGCCT 58.646 43.478 0.00 0.00 0.00 4.58
239 244 5.746990 ACAGCCTATTCGATTTATAGCCT 57.253 39.130 0.00 0.00 0.00 4.58
244 249 9.778741 TCAGAATTTACAGCCTATTCGATTTAT 57.221 29.630 0.00 0.00 34.33 1.40
245 250 9.607988 TTCAGAATTTACAGCCTATTCGATTTA 57.392 29.630 0.00 0.00 34.33 1.40
246 251 8.506168 TTCAGAATTTACAGCCTATTCGATTT 57.494 30.769 0.00 0.00 34.33 2.17
247 252 8.682936 ATTCAGAATTTACAGCCTATTCGATT 57.317 30.769 0.00 0.00 34.33 3.34
253 258 9.466497 TGAAAGAATTCAGAATTTACAGCCTAT 57.534 29.630 9.84 0.00 40.59 2.57
301 308 3.011818 TGGCTTCACATCACATCACATC 58.988 45.455 0.00 0.00 0.00 3.06
305 312 1.001860 TCGTGGCTTCACATCACATCA 59.998 47.619 0.00 0.00 41.27 3.07
307 314 2.011947 CATCGTGGCTTCACATCACAT 58.988 47.619 0.00 0.00 41.27 3.21
320 327 2.743664 TCAAGCAAAGTCATCATCGTGG 59.256 45.455 0.00 0.00 0.00 4.94
347 354 6.097554 TCAACCACTGCAAAAAGAAAAGGATA 59.902 34.615 0.00 0.00 0.00 2.59
348 355 5.104982 TCAACCACTGCAAAAAGAAAAGGAT 60.105 36.000 0.00 0.00 0.00 3.24
351 358 5.502869 GCATCAACCACTGCAAAAAGAAAAG 60.503 40.000 0.00 0.00 38.28 2.27
365 372 2.094182 TCGAGGAGTAAGCATCAACCAC 60.094 50.000 0.00 0.00 0.00 4.16
367 374 2.961526 TCGAGGAGTAAGCATCAACC 57.038 50.000 0.00 0.00 0.00 3.77
390 397 0.040336 CGGCATCATGAGCATTGAGC 60.040 55.000 15.83 5.47 46.19 4.26
410 417 4.669206 TTCAACAACATTGAAGTGGCAT 57.331 36.364 0.00 0.00 33.90 4.40
421 428 4.356289 GCACCGTAACTTTTCAACAACAT 58.644 39.130 0.00 0.00 0.00 2.71
431 438 2.621526 CAAAAGGAGGCACCGTAACTTT 59.378 45.455 0.00 0.00 44.74 2.66
432 439 2.227194 CAAAAGGAGGCACCGTAACTT 58.773 47.619 0.00 0.00 44.74 2.66
434 441 1.601166 ACAAAAGGAGGCACCGTAAC 58.399 50.000 0.00 0.00 44.74 2.50
435 442 2.158726 AGAACAAAAGGAGGCACCGTAA 60.159 45.455 0.00 0.00 44.74 3.18
436 443 1.418637 AGAACAAAAGGAGGCACCGTA 59.581 47.619 0.00 0.00 44.74 4.02
437 444 0.182775 AGAACAAAAGGAGGCACCGT 59.817 50.000 0.00 0.00 44.74 4.83
438 445 2.178912 TAGAACAAAAGGAGGCACCG 57.821 50.000 0.00 0.00 44.74 4.94
439 446 2.164422 GCATAGAACAAAAGGAGGCACC 59.836 50.000 0.00 0.00 39.35 5.01
440 447 2.164422 GGCATAGAACAAAAGGAGGCAC 59.836 50.000 0.00 0.00 0.00 5.01
449 456 5.470098 GTCAGTGAAAGAGGCATAGAACAAA 59.530 40.000 0.00 0.00 0.00 2.83
470 477 3.289407 TGTTTCAATGGTGTGAGGTCA 57.711 42.857 0.00 0.00 0.00 4.02
472 479 4.648762 TCAAATGTTTCAATGGTGTGAGGT 59.351 37.500 0.00 0.00 0.00 3.85
509 516 4.742438 TTCTAAAACACGGAGATGTTGC 57.258 40.909 0.00 0.00 42.01 4.17
513 520 6.743575 AAGGATTTCTAAAACACGGAGATG 57.256 37.500 0.00 0.00 0.00 2.90
516 523 6.554334 TCAAAGGATTTCTAAAACACGGAG 57.446 37.500 0.00 0.00 35.03 4.63
519 526 8.795786 TTGATTCAAAGGATTTCTAAAACACG 57.204 30.769 0.00 0.00 35.03 4.49
557 565 7.233838 TTGAGTAAAACATCAACGAGGGACTC 61.234 42.308 0.00 0.00 40.21 3.36
558 566 5.454187 TTGAGTAAAACATCAACGAGGGACT 60.454 40.000 0.00 0.00 33.41 3.85
559 567 4.312443 TGAGTAAAACATCAACGAGGGAC 58.688 43.478 0.00 0.00 0.00 4.46
560 568 4.610605 TGAGTAAAACATCAACGAGGGA 57.389 40.909 0.00 0.00 0.00 4.20
572 580 8.914253 AATCGTGGGGATCTGTTTGAGTAAAAC 61.914 40.741 0.00 0.00 40.67 2.43
573 581 4.069304 CGTGGGGATCTGTTTGAGTAAAA 58.931 43.478 0.00 0.00 0.00 1.52
581 1854 1.406887 CCGAATCGTGGGGATCTGTTT 60.407 52.381 0.82 0.00 33.02 2.83
598 1871 3.038280 ACCATGGATGTACAATCTCCGA 58.962 45.455 21.47 0.00 31.36 4.55
604 1877 3.650281 TGCTGACCATGGATGTACAAT 57.350 42.857 21.47 0.00 0.00 2.71
660 1933 4.150897 TCGGGATTTATCAAGGTCCTTG 57.849 45.455 23.69 23.69 42.25 3.61
661 1934 4.524053 GTTCGGGATTTATCAAGGTCCTT 58.476 43.478 0.00 0.00 0.00 3.36
663 1936 2.870411 CGTTCGGGATTTATCAAGGTCC 59.130 50.000 0.00 0.00 0.00 4.46
664 1937 3.528532 ACGTTCGGGATTTATCAAGGTC 58.471 45.455 0.00 0.00 0.00 3.85
665 1938 3.622166 ACGTTCGGGATTTATCAAGGT 57.378 42.857 0.00 0.00 0.00 3.50
666 1939 3.000925 CGAACGTTCGGGATTTATCAAGG 59.999 47.826 36.53 8.97 46.30 3.61
667 1940 4.178156 CGAACGTTCGGGATTTATCAAG 57.822 45.455 36.53 9.39 46.30 3.02
680 1953 3.126343 ACATGCCTAAAATCCGAACGTTC 59.874 43.478 18.47 18.47 0.00 3.95
681 1954 3.078837 ACATGCCTAAAATCCGAACGTT 58.921 40.909 0.00 0.00 0.00 3.99
682 1955 2.676342 GACATGCCTAAAATCCGAACGT 59.324 45.455 0.00 0.00 0.00 3.99
683 1956 2.675844 TGACATGCCTAAAATCCGAACG 59.324 45.455 0.00 0.00 0.00 3.95
684 1957 4.261197 GGATGACATGCCTAAAATCCGAAC 60.261 45.833 0.00 0.00 0.00 3.95
685 1958 3.882888 GGATGACATGCCTAAAATCCGAA 59.117 43.478 0.00 0.00 0.00 4.30
686 1959 3.476552 GGATGACATGCCTAAAATCCGA 58.523 45.455 0.00 0.00 0.00 4.55
687 1960 3.904136 GGATGACATGCCTAAAATCCG 57.096 47.619 0.00 0.00 0.00 4.18
688 1961 3.476552 TCGGATGACATGCCTAAAATCC 58.523 45.455 0.86 0.00 0.00 3.01
689 1962 4.552767 CGTTCGGATGACATGCCTAAAATC 60.553 45.833 0.86 0.00 0.00 2.17
690 1963 3.312421 CGTTCGGATGACATGCCTAAAAT 59.688 43.478 0.86 0.00 0.00 1.82
691 1964 2.675844 CGTTCGGATGACATGCCTAAAA 59.324 45.455 0.86 0.00 0.00 1.52
692 1965 2.276201 CGTTCGGATGACATGCCTAAA 58.724 47.619 0.86 0.00 0.00 1.85
693 1966 1.206132 ACGTTCGGATGACATGCCTAA 59.794 47.619 0.86 0.00 0.00 2.69
694 1967 0.821517 ACGTTCGGATGACATGCCTA 59.178 50.000 0.86 0.00 0.00 3.93
695 1968 0.036388 AACGTTCGGATGACATGCCT 60.036 50.000 0.00 0.00 0.00 4.75
696 1969 0.802494 AAACGTTCGGATGACATGCC 59.198 50.000 0.00 0.00 0.00 4.40
697 1970 2.611974 AAAACGTTCGGATGACATGC 57.388 45.000 0.00 0.00 0.00 4.06
724 1997 7.459593 TGCCACCTTGCATCAACTAAAGTTG 62.460 44.000 15.25 15.25 45.09 3.16
725 1998 3.005791 GCCACCTTGCATCAACTAAAGTT 59.994 43.478 0.00 0.00 39.12 2.66
726 1999 2.558359 GCCACCTTGCATCAACTAAAGT 59.442 45.455 0.00 0.00 0.00 2.66
727 2000 2.557924 TGCCACCTTGCATCAACTAAAG 59.442 45.455 0.00 0.00 36.04 1.85
728 2001 2.591923 TGCCACCTTGCATCAACTAAA 58.408 42.857 0.00 0.00 36.04 1.85
729 2002 2.284754 TGCCACCTTGCATCAACTAA 57.715 45.000 0.00 0.00 36.04 2.24
730 2003 1.885887 GTTGCCACCTTGCATCAACTA 59.114 47.619 0.00 0.00 41.70 2.24
731 2004 0.675633 GTTGCCACCTTGCATCAACT 59.324 50.000 0.00 0.00 41.70 3.16
732 2005 0.675633 AGTTGCCACCTTGCATCAAC 59.324 50.000 0.00 0.00 41.70 3.18
733 2006 1.412079 AAGTTGCCACCTTGCATCAA 58.588 45.000 0.00 0.00 41.70 2.57
734 2007 1.412079 AAAGTTGCCACCTTGCATCA 58.588 45.000 0.00 0.00 41.70 3.07
735 2008 2.558359 ACTAAAGTTGCCACCTTGCATC 59.442 45.455 0.00 0.00 41.70 3.91
736 2009 2.597455 ACTAAAGTTGCCACCTTGCAT 58.403 42.857 0.00 0.00 41.70 3.96
737 2010 2.065899 ACTAAAGTTGCCACCTTGCA 57.934 45.000 0.00 0.00 40.07 4.08
748 2021 7.709613 AGTCGTCATGTCTTAACAACTAAAGTT 59.290 33.333 0.00 0.00 39.30 2.66
749 2022 7.208080 AGTCGTCATGTCTTAACAACTAAAGT 58.792 34.615 0.00 0.00 39.30 2.66
750 2023 7.639162 AGTCGTCATGTCTTAACAACTAAAG 57.361 36.000 0.00 0.00 39.30 1.85
751 2024 8.332464 CAAAGTCGTCATGTCTTAACAACTAAA 58.668 33.333 0.00 0.00 39.30 1.85
752 2025 7.493320 ACAAAGTCGTCATGTCTTAACAACTAA 59.507 33.333 0.00 0.00 39.30 2.24
753 2026 6.982141 ACAAAGTCGTCATGTCTTAACAACTA 59.018 34.615 0.00 0.00 39.30 2.24
754 2027 5.815740 ACAAAGTCGTCATGTCTTAACAACT 59.184 36.000 0.00 0.00 39.30 3.16
755 2028 6.044512 ACAAAGTCGTCATGTCTTAACAAC 57.955 37.500 0.00 0.00 39.30 3.32
756 2029 6.537301 AGAACAAAGTCGTCATGTCTTAACAA 59.463 34.615 0.00 0.00 39.30 2.83
757 2030 6.046593 AGAACAAAGTCGTCATGTCTTAACA 58.953 36.000 0.00 0.00 40.38 2.41
758 2031 6.526566 AGAACAAAGTCGTCATGTCTTAAC 57.473 37.500 0.00 0.00 0.00 2.01
759 2032 8.827177 ATTAGAACAAAGTCGTCATGTCTTAA 57.173 30.769 0.00 0.00 0.00 1.85
760 2033 8.827177 AATTAGAACAAAGTCGTCATGTCTTA 57.173 30.769 0.00 0.00 0.00 2.10
761 2034 7.730364 AATTAGAACAAAGTCGTCATGTCTT 57.270 32.000 0.00 0.00 0.00 3.01
762 2035 9.436957 AATAATTAGAACAAAGTCGTCATGTCT 57.563 29.630 0.00 0.00 0.00 3.41
791 2064 8.762426 GGTTGGCAAACGTAATAATTTTGTAAA 58.238 29.630 0.00 0.00 37.15 2.01
792 2065 8.142551 AGGTTGGCAAACGTAATAATTTTGTAA 58.857 29.630 10.05 0.00 37.15 2.41
793 2066 7.659186 AGGTTGGCAAACGTAATAATTTTGTA 58.341 30.769 10.05 0.00 37.15 2.41
794 2067 6.517605 AGGTTGGCAAACGTAATAATTTTGT 58.482 32.000 10.05 0.00 37.15 2.83
795 2068 6.183359 CGAGGTTGGCAAACGTAATAATTTTG 60.183 38.462 10.05 0.00 37.15 2.44
796 2069 5.859648 CGAGGTTGGCAAACGTAATAATTTT 59.140 36.000 10.05 0.00 37.15 1.82
797 2070 5.048573 ACGAGGTTGGCAAACGTAATAATTT 60.049 36.000 20.54 0.00 37.15 1.82
798 2071 4.456566 ACGAGGTTGGCAAACGTAATAATT 59.543 37.500 20.54 0.00 37.15 1.40
799 2072 4.004982 ACGAGGTTGGCAAACGTAATAAT 58.995 39.130 20.54 0.00 37.15 1.28
800 2073 3.186817 CACGAGGTTGGCAAACGTAATAA 59.813 43.478 21.12 0.00 37.15 1.40
801 2074 2.737783 CACGAGGTTGGCAAACGTAATA 59.262 45.455 21.12 0.00 37.15 0.98
802 2075 1.533731 CACGAGGTTGGCAAACGTAAT 59.466 47.619 21.12 1.67 37.15 1.89
803 2076 0.938713 CACGAGGTTGGCAAACGTAA 59.061 50.000 21.12 0.00 37.15 3.18
804 2077 0.179078 ACACGAGGTTGGCAAACGTA 60.179 50.000 21.12 0.00 37.15 3.57
805 2078 1.450669 ACACGAGGTTGGCAAACGT 60.451 52.632 10.05 14.84 37.15 3.99
806 2079 1.010125 CACACGAGGTTGGCAAACG 60.010 57.895 10.05 14.22 37.15 3.60
807 2080 0.736053 TTCACACGAGGTTGGCAAAC 59.264 50.000 7.31 7.31 35.40 2.93
808 2081 0.736053 GTTCACACGAGGTTGGCAAA 59.264 50.000 0.00 0.00 0.00 3.68
809 2082 0.107410 AGTTCACACGAGGTTGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
810 2083 0.753867 TAGTTCACACGAGGTTGGCA 59.246 50.000 0.00 0.00 0.00 4.92
811 2084 1.873698 TTAGTTCACACGAGGTTGGC 58.126 50.000 0.00 0.00 0.00 4.52
812 2085 3.463944 ACTTTAGTTCACACGAGGTTGG 58.536 45.455 0.00 0.00 0.00 3.77
813 2086 4.331717 ACAACTTTAGTTCACACGAGGTTG 59.668 41.667 0.00 0.00 37.16 3.77
814 2087 4.510571 ACAACTTTAGTTCACACGAGGTT 58.489 39.130 0.00 0.00 35.83 3.50
815 2088 4.117685 GACAACTTTAGTTCACACGAGGT 58.882 43.478 0.00 0.00 35.83 3.85
816 2089 4.116961 TGACAACTTTAGTTCACACGAGG 58.883 43.478 0.00 0.00 35.83 4.63
817 2090 5.907197 ATGACAACTTTAGTTCACACGAG 57.093 39.130 0.00 0.00 35.83 4.18
818 2091 7.773864 TTTATGACAACTTTAGTTCACACGA 57.226 32.000 0.00 0.00 35.83 4.35
819 2092 8.829514 TTTTTATGACAACTTTAGTTCACACG 57.170 30.769 0.00 0.00 35.83 4.49
841 2114 4.453751 AGCATGGCAGTTTGAATGTTTTT 58.546 34.783 0.00 0.00 0.00 1.94
842 2115 4.075963 AGCATGGCAGTTTGAATGTTTT 57.924 36.364 0.00 0.00 0.00 2.43
843 2116 3.756933 AGCATGGCAGTTTGAATGTTT 57.243 38.095 0.00 0.00 0.00 2.83
844 2117 3.756933 AAGCATGGCAGTTTGAATGTT 57.243 38.095 0.00 0.00 0.00 2.71
845 2118 4.870123 TTAAGCATGGCAGTTTGAATGT 57.130 36.364 0.00 0.00 0.00 2.71
846 2119 6.183360 GGATTTTAAGCATGGCAGTTTGAATG 60.183 38.462 0.00 0.00 0.00 2.67
847 2120 5.876460 GGATTTTAAGCATGGCAGTTTGAAT 59.124 36.000 0.00 0.00 0.00 2.57
848 2121 5.237048 GGATTTTAAGCATGGCAGTTTGAA 58.763 37.500 0.00 0.00 0.00 2.69
849 2122 4.617995 CGGATTTTAAGCATGGCAGTTTGA 60.618 41.667 0.00 0.00 0.00 2.69
850 2123 3.613737 CGGATTTTAAGCATGGCAGTTTG 59.386 43.478 0.00 0.00 0.00 2.93
851 2124 3.509575 TCGGATTTTAAGCATGGCAGTTT 59.490 39.130 0.00 0.00 0.00 2.66
852 2125 3.088532 TCGGATTTTAAGCATGGCAGTT 58.911 40.909 0.00 0.00 0.00 3.16
853 2126 2.722094 TCGGATTTTAAGCATGGCAGT 58.278 42.857 0.00 0.00 0.00 4.40
854 2127 3.438360 GTTCGGATTTTAAGCATGGCAG 58.562 45.455 0.00 0.00 0.00 4.85
855 2128 2.159448 CGTTCGGATTTTAAGCATGGCA 60.159 45.455 0.00 0.00 0.00 4.92
856 2129 2.159435 ACGTTCGGATTTTAAGCATGGC 60.159 45.455 0.00 0.00 0.00 4.40
857 2130 3.757745 ACGTTCGGATTTTAAGCATGG 57.242 42.857 0.00 0.00 0.00 3.66
858 2131 3.778718 CGAACGTTCGGATTTTAAGCATG 59.221 43.478 36.53 8.97 46.30 4.06
859 2132 3.998522 CGAACGTTCGGATTTTAAGCAT 58.001 40.909 36.53 0.00 46.30 3.79
860 2133 3.443054 CGAACGTTCGGATTTTAAGCA 57.557 42.857 36.53 0.00 46.30 3.91
871 2144 6.673556 TGGAAATGATAAATTCCGAACGTTCG 60.674 38.462 36.99 36.99 46.58 3.95
872 2145 6.548171 TGGAAATGATAAATTCCGAACGTTC 58.452 36.000 18.47 18.47 46.58 3.95
873 2146 6.503589 TGGAAATGATAAATTCCGAACGTT 57.496 33.333 0.00 0.00 46.58 3.99
874 2147 6.503589 TTGGAAATGATAAATTCCGAACGT 57.496 33.333 0.00 0.00 46.58 3.99
875 2148 7.804614 TTTTGGAAATGATAAATTCCGAACG 57.195 32.000 0.00 0.00 44.80 3.95
897 2170 6.599638 GGTGGCTCAGTCTAGACATTATTTTT 59.400 38.462 24.44 0.00 36.73 1.94
898 2171 6.116126 GGTGGCTCAGTCTAGACATTATTTT 58.884 40.000 24.44 0.00 36.73 1.82
899 2172 5.396884 GGGTGGCTCAGTCTAGACATTATTT 60.397 44.000 24.44 0.00 36.73 1.40
900 2173 4.101741 GGGTGGCTCAGTCTAGACATTATT 59.898 45.833 24.44 0.36 36.73 1.40
901 2174 3.643792 GGGTGGCTCAGTCTAGACATTAT 59.356 47.826 24.44 0.76 36.73 1.28
902 2175 3.031736 GGGTGGCTCAGTCTAGACATTA 58.968 50.000 24.44 8.44 36.73 1.90
903 2176 1.834263 GGGTGGCTCAGTCTAGACATT 59.166 52.381 24.44 1.95 36.73 2.71
904 2177 1.007721 AGGGTGGCTCAGTCTAGACAT 59.992 52.381 24.44 7.29 36.73 3.06
905 2178 0.409876 AGGGTGGCTCAGTCTAGACA 59.590 55.000 24.44 4.18 29.82 3.41
906 2179 1.107945 GAGGGTGGCTCAGTCTAGAC 58.892 60.000 15.41 15.41 0.00 2.59
907 2180 0.704664 TGAGGGTGGCTCAGTCTAGA 59.295 55.000 0.00 0.00 0.00 2.43
908 2181 1.480137 CTTGAGGGTGGCTCAGTCTAG 59.520 57.143 0.00 0.00 31.98 2.43
909 2182 1.561643 CTTGAGGGTGGCTCAGTCTA 58.438 55.000 0.00 0.00 31.98 2.59
910 2183 1.197430 CCTTGAGGGTGGCTCAGTCT 61.197 60.000 0.00 0.00 31.98 3.24
911 2184 1.298014 CCTTGAGGGTGGCTCAGTC 59.702 63.158 0.00 0.00 31.98 3.51
912 2185 3.488423 CCTTGAGGGTGGCTCAGT 58.512 61.111 0.00 0.00 31.98 3.41
922 2195 0.916358 ACTGATGGGTCCCCTTGAGG 60.916 60.000 5.13 0.00 36.94 3.86
923 2196 1.765314 CTACTGATGGGTCCCCTTGAG 59.235 57.143 5.13 4.76 36.94 3.02
924 2197 1.080498 ACTACTGATGGGTCCCCTTGA 59.920 52.381 5.13 0.00 36.94 3.02
925 2198 1.210478 CACTACTGATGGGTCCCCTTG 59.790 57.143 5.13 0.00 36.94 3.61
926 2199 1.080498 TCACTACTGATGGGTCCCCTT 59.920 52.381 5.13 0.00 36.94 3.95
927 2200 0.716591 TCACTACTGATGGGTCCCCT 59.283 55.000 5.13 0.00 36.94 4.79
928 2201 1.123928 CTCACTACTGATGGGTCCCC 58.876 60.000 5.13 0.00 0.00 4.81
929 2202 0.466124 GCTCACTACTGATGGGTCCC 59.534 60.000 0.00 0.00 0.00 4.46
930 2203 1.134670 GTGCTCACTACTGATGGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
931 2204 1.469940 CGTGCTCACTACTGATGGGTC 60.470 57.143 0.00 0.00 0.00 4.46
932 2205 0.532573 CGTGCTCACTACTGATGGGT 59.467 55.000 0.00 0.00 0.00 4.51
933 2206 0.807667 GCGTGCTCACTACTGATGGG 60.808 60.000 0.00 0.00 0.00 4.00
934 2207 0.174389 AGCGTGCTCACTACTGATGG 59.826 55.000 0.00 0.00 0.00 3.51
935 2208 1.554392 GAGCGTGCTCACTACTGATG 58.446 55.000 16.63 0.00 42.31 3.07
936 2209 0.457851 GGAGCGTGCTCACTACTGAT 59.542 55.000 22.20 0.00 44.40 2.90
937 2210 0.893727 TGGAGCGTGCTCACTACTGA 60.894 55.000 22.20 0.00 44.40 3.41
938 2211 0.038251 TTGGAGCGTGCTCACTACTG 60.038 55.000 22.20 0.00 44.40 2.74
939 2212 0.038159 GTTGGAGCGTGCTCACTACT 60.038 55.000 22.20 0.00 44.40 2.57
940 2213 0.038159 AGTTGGAGCGTGCTCACTAC 60.038 55.000 22.20 16.76 44.40 2.73
941 2214 0.038251 CAGTTGGAGCGTGCTCACTA 60.038 55.000 22.20 6.42 44.40 2.74
942 2215 1.301244 CAGTTGGAGCGTGCTCACT 60.301 57.895 22.20 15.05 44.40 3.41
943 2216 2.959357 GCAGTTGGAGCGTGCTCAC 61.959 63.158 22.20 13.13 44.40 3.51
944 2217 2.666190 GCAGTTGGAGCGTGCTCA 60.666 61.111 22.20 6.99 44.40 4.26
945 2218 2.358003 AGCAGTTGGAGCGTGCTC 60.358 61.111 13.40 13.40 44.28 4.26
947 2220 3.782244 CGAGCAGTTGGAGCGTGC 61.782 66.667 0.00 0.00 37.48 5.34
948 2221 3.782244 GCGAGCAGTTGGAGCGTG 61.782 66.667 0.00 0.00 37.01 5.34
964 2237 4.114997 CAAATGACGTGGCCGGGC 62.115 66.667 23.42 23.42 38.78 6.13
965 2238 3.439540 CCAAATGACGTGGCCGGG 61.440 66.667 2.18 0.00 38.78 5.73
966 2239 2.359354 TCCAAATGACGTGGCCGG 60.359 61.111 0.00 0.00 38.78 6.13
967 2240 2.686816 GGTCCAAATGACGTGGCCG 61.687 63.158 0.00 0.00 45.46 6.13
968 2241 2.340328 GGGTCCAAATGACGTGGCC 61.340 63.158 0.00 0.00 45.46 5.36
969 2242 1.602323 TGGGTCCAAATGACGTGGC 60.602 57.895 0.00 0.00 45.46 5.01
970 2243 1.241315 GGTGGGTCCAAATGACGTGG 61.241 60.000 0.00 0.00 45.46 4.94
971 2244 0.250727 AGGTGGGTCCAAATGACGTG 60.251 55.000 0.00 0.00 45.46 4.49
972 2245 0.250727 CAGGTGGGTCCAAATGACGT 60.251 55.000 0.00 0.00 45.46 4.34
973 2246 0.250727 ACAGGTGGGTCCAAATGACG 60.251 55.000 8.99 0.00 45.46 4.35
974 2247 1.202879 TGACAGGTGGGTCCAAATGAC 60.203 52.381 8.99 4.66 43.67 3.06
975 2248 1.144691 TGACAGGTGGGTCCAAATGA 58.855 50.000 8.99 0.00 36.97 2.57
976 2249 2.220653 ATGACAGGTGGGTCCAAATG 57.779 50.000 0.00 0.00 36.97 2.32
977 2250 2.355716 CGTATGACAGGTGGGTCCAAAT 60.356 50.000 0.00 0.00 36.97 2.32
978 2251 1.002659 CGTATGACAGGTGGGTCCAAA 59.997 52.381 0.00 0.00 36.97 3.28
979 2252 0.611200 CGTATGACAGGTGGGTCCAA 59.389 55.000 0.00 0.00 36.97 3.53
980 2253 0.251877 TCGTATGACAGGTGGGTCCA 60.252 55.000 0.00 0.00 36.97 4.02
981 2254 0.899720 TTCGTATGACAGGTGGGTCC 59.100 55.000 0.00 0.00 36.97 4.46
982 2255 2.550978 CATTCGTATGACAGGTGGGTC 58.449 52.381 0.00 0.00 38.29 4.46
983 2256 1.406887 GCATTCGTATGACAGGTGGGT 60.407 52.381 6.17 0.00 33.37 4.51
984 2257 1.134401 AGCATTCGTATGACAGGTGGG 60.134 52.381 6.17 0.00 33.37 4.61
985 2258 1.935873 CAGCATTCGTATGACAGGTGG 59.064 52.381 6.17 0.00 33.37 4.61
986 2259 2.892374 TCAGCATTCGTATGACAGGTG 58.108 47.619 6.17 8.12 33.37 4.00
987 2260 3.827008 ATCAGCATTCGTATGACAGGT 57.173 42.857 6.17 0.00 33.37 4.00
988 2261 4.620982 TGTATCAGCATTCGTATGACAGG 58.379 43.478 6.17 0.00 33.37 4.00
989 2262 5.284864 ACTGTATCAGCATTCGTATGACAG 58.715 41.667 14.93 14.93 37.50 3.51
1033 2306 1.901650 GAAACAGAGGCCGAACGCTG 61.902 60.000 0.00 4.08 42.89 5.18
1053 2326 4.168291 CTGCGAAGAGGGGAGGGC 62.168 72.222 0.00 0.00 0.00 5.19
1056 2329 2.186384 CAGCTGCGAAGAGGGGAG 59.814 66.667 0.00 0.00 0.00 4.30
1256 2532 3.775654 GTGGAGTGGAGCGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
1272 2548 2.841044 ACAGGACGAACACCGGGT 60.841 61.111 6.32 0.00 43.93 5.28
1335 2613 1.211190 GCCTCTGGCTGCGAAAAAG 59.789 57.895 0.73 0.00 46.69 2.27
1474 2755 3.990469 ACATCTTAACTTGCACTCGTCAG 59.010 43.478 0.00 0.00 0.00 3.51
1477 2758 3.990092 TCACATCTTAACTTGCACTCGT 58.010 40.909 0.00 0.00 0.00 4.18
1479 2760 6.545504 TTTCTCACATCTTAACTTGCACTC 57.454 37.500 0.00 0.00 0.00 3.51
1582 2863 0.618680 TCCCTGTCAGTGATCCCCTG 60.619 60.000 0.00 3.65 0.00 4.45
1666 2947 2.522638 CGGCGAATGGACTTACGGC 61.523 63.158 0.00 0.00 45.17 5.68
1816 3143 9.126151 TCATGTTAGAACAAAACCACTTGATAA 57.874 29.630 0.00 0.00 43.03 1.75
1851 3178 4.940046 TGCTCTCTAAGATGCCAAAGAAAG 59.060 41.667 0.00 0.00 0.00 2.62
1863 3191 4.727507 AGCGAAGAATTGCTCTCTAAGA 57.272 40.909 0.00 0.00 36.53 2.10
1952 3288 4.478317 GGATCATCCACATTCCCCCATATA 59.522 45.833 0.00 0.00 36.28 0.86
1988 3325 4.463891 ACACTCACATCAAAATCCCATTCC 59.536 41.667 0.00 0.00 0.00 3.01
2010 3347 5.449725 GCTCAAGATTAGCATGAAGGGAAAC 60.450 44.000 0.00 0.00 39.83 2.78
2046 3384 4.629200 GTGTTTGTTTGCCTTTCATTCACA 59.371 37.500 0.00 0.00 0.00 3.58
2061 3399 1.202830 TCCATAGTGGCGGTGTTTGTT 60.203 47.619 0.00 0.00 37.47 2.83
2079 3417 2.482374 GTGCATGCGCTGAGTTCC 59.518 61.111 23.77 0.00 39.64 3.62
2080 3418 1.855213 TTGGTGCATGCGCTGAGTTC 61.855 55.000 28.86 12.93 39.64 3.01
2180 3520 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2181 3521 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2182 3522 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2188 3528 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
2189 3529 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
2190 3530 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
2191 3531 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
2192 3532 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
2193 3533 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
2194 3534 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
2207 3547 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2208 3548 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2209 3549 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
2210 3550 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
2216 3556 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2217 3557 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2218 3558 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2219 3559 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
2220 3560 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
2221 3561 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2222 3562 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2223 3563 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2224 3564 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2225 3565 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2226 3566 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2227 3567 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2228 3568 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2229 3569 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2230 3570 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2231 3571 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2232 3572 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2233 3573 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2234 3574 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
2235 3575 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2236 3576 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2237 3577 2.969950 CAAATACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
2238 3578 1.768870 CAAATACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
2239 3579 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2240 3580 1.201424 ACAAATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
2241 3581 4.476628 TTAACAAATACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
2242 3582 5.240121 TGTTTAACAAATACTCCCTCCGTC 58.760 41.667 0.00 0.00 0.00 4.79
2243 3583 5.221783 ACTGTTTAACAAATACTCCCTCCGT 60.222 40.000 0.00 0.00 0.00 4.69
2244 3584 5.243207 ACTGTTTAACAAATACTCCCTCCG 58.757 41.667 0.00 0.00 0.00 4.63
2245 3585 6.473758 AGACTGTTTAACAAATACTCCCTCC 58.526 40.000 0.00 0.00 0.00 4.30
2246 3586 6.594547 GGAGACTGTTTAACAAATACTCCCTC 59.405 42.308 18.90 9.36 36.42 4.30
2247 3587 6.043938 TGGAGACTGTTTAACAAATACTCCCT 59.956 38.462 22.83 6.22 40.11 4.20
2248 3588 6.235664 TGGAGACTGTTTAACAAATACTCCC 58.764 40.000 22.83 11.01 40.11 4.30
2249 3589 7.923414 ATGGAGACTGTTTAACAAATACTCC 57.077 36.000 20.92 20.92 40.89 3.85
2250 3590 9.612620 CAAATGGAGACTGTTTAACAAATACTC 57.387 33.333 0.00 5.78 0.00 2.59
2251 3591 8.082242 GCAAATGGAGACTGTTTAACAAATACT 58.918 33.333 0.00 0.00 0.00 2.12
2252 3592 8.082242 AGCAAATGGAGACTGTTTAACAAATAC 58.918 33.333 0.00 0.00 0.00 1.89
2253 3593 8.177119 AGCAAATGGAGACTGTTTAACAAATA 57.823 30.769 0.00 0.00 0.00 1.40
2254 3594 7.054491 AGCAAATGGAGACTGTTTAACAAAT 57.946 32.000 0.00 0.00 0.00 2.32
2389 3746 0.531974 AACAGCATATACCGCCACCG 60.532 55.000 0.00 0.00 0.00 4.94
2390 3747 1.333619 CAAACAGCATATACCGCCACC 59.666 52.381 0.00 0.00 0.00 4.61
2391 3748 1.333619 CCAAACAGCATATACCGCCAC 59.666 52.381 0.00 0.00 0.00 5.01
2392 3749 1.674359 CCAAACAGCATATACCGCCA 58.326 50.000 0.00 0.00 0.00 5.69
2393 3750 0.310854 GCCAAACAGCATATACCGCC 59.689 55.000 0.00 0.00 0.00 6.13
2394 3751 1.021202 TGCCAAACAGCATATACCGC 58.979 50.000 0.00 0.00 38.00 5.68
2528 3885 6.947733 TCCCTGAAATCTTGTGTCATTGTAAT 59.052 34.615 0.00 0.00 0.00 1.89
2530 3887 5.875224 TCCCTGAAATCTTGTGTCATTGTA 58.125 37.500 0.00 0.00 0.00 2.41
2550 3907 0.402121 AAGCTGTTCCAGTTCCTCCC 59.598 55.000 0.00 0.00 33.43 4.30
2739 4108 2.597520 GTAGAGTTGAACACCTCGAGC 58.402 52.381 6.99 0.00 32.88 5.03
2844 4214 2.510613 GGCAAAAGGGCTAGTACAACA 58.489 47.619 0.00 0.00 39.42 3.33
2869 4239 0.730840 ACATGACAGCACATCGCATG 59.269 50.000 0.00 0.00 46.13 4.06
2870 4240 2.314323 TACATGACAGCACATCGCAT 57.686 45.000 0.00 0.00 46.13 4.73
2874 4244 6.401367 GGCAAAATTTTACATGACAGCACATC 60.401 38.462 2.44 0.00 0.00 3.06
2968 4339 5.559770 ACCCCTTATTTTGGCTGAATTTTG 58.440 37.500 0.00 0.00 0.00 2.44
3023 4394 5.464069 TGATTATTGCCAGGACTACCTCTA 58.536 41.667 0.00 0.00 45.94 2.43
3080 4451 0.606401 ACAAATGGACCTGTCAGCCG 60.606 55.000 0.00 0.00 0.00 5.52
3084 4455 1.052617 TCCGACAAATGGACCTGTCA 58.947 50.000 11.66 0.00 41.71 3.58
3151 4522 6.266168 ACTGCGATATGAAATTTGGTTCAA 57.734 33.333 0.00 0.00 40.76 2.69
3152 4523 5.895636 ACTGCGATATGAAATTTGGTTCA 57.104 34.783 0.00 0.00 41.59 3.18
3153 4524 5.743872 GGAACTGCGATATGAAATTTGGTTC 59.256 40.000 0.00 0.00 0.00 3.62
3155 4526 4.704540 TGGAACTGCGATATGAAATTTGGT 59.295 37.500 0.00 0.00 0.00 3.67
3156 4527 5.247507 TGGAACTGCGATATGAAATTTGG 57.752 39.130 0.00 0.00 0.00 3.28
3157 4528 6.732154 AGATGGAACTGCGATATGAAATTTG 58.268 36.000 0.00 0.00 0.00 2.32
3158 4529 6.949352 AGATGGAACTGCGATATGAAATTT 57.051 33.333 0.00 0.00 0.00 1.82
3159 4530 6.949352 AAGATGGAACTGCGATATGAAATT 57.051 33.333 0.00 0.00 0.00 1.82
3161 4532 6.757897 AAAAGATGGAACTGCGATATGAAA 57.242 33.333 0.00 0.00 0.00 2.69
3162 4533 6.757897 AAAAAGATGGAACTGCGATATGAA 57.242 33.333 0.00 0.00 0.00 2.57
3304 4679 4.521256 AGAGTTGTTAGAGACCTGAGACAC 59.479 45.833 0.00 0.00 0.00 3.67
3440 4815 7.161404 TGCAGTGAAGAATGTAGTTTAGATGT 58.839 34.615 0.00 0.00 0.00 3.06
3447 4822 7.516198 AAGAAATGCAGTGAAGAATGTAGTT 57.484 32.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.