Multiple sequence alignment - TraesCS6D01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G101300 chr6D 100.000 3244 0 0 1 3244 63805154 63808397 0.000000e+00 5991
1 TraesCS6D01G101300 chr6D 93.440 1494 74 5 1611 3087 447819069 447820555 0.000000e+00 2194
2 TraesCS6D01G101300 chr6D 86.822 129 16 1 456 584 63814941 63814814 3.370000e-30 143
3 TraesCS6D01G101300 chr5D 90.483 2690 154 37 612 3227 274114126 274116787 0.000000e+00 3456
4 TraesCS6D01G101300 chr5D 93.359 1566 76 8 1611 3162 114471258 114469707 0.000000e+00 2290
5 TraesCS6D01G101300 chr5D 91.981 1484 93 7 1620 3087 398262585 398261112 0.000000e+00 2058
6 TraesCS6D01G101300 chr5D 86.776 915 85 20 612 1495 494245452 494244543 0.000000e+00 987
7 TraesCS6D01G101300 chr1B 96.490 1567 49 4 974 2540 647923506 647921946 0.000000e+00 2584
8 TraesCS6D01G101300 chr1B 88.094 1957 139 41 607 2529 572992375 572990479 0.000000e+00 2237
9 TraesCS6D01G101300 chr1B 91.075 1535 96 18 1647 3162 529698772 529697260 0.000000e+00 2037
10 TraesCS6D01G101300 chr1B 86.658 1574 133 43 973 2498 557113963 557115507 0.000000e+00 1672
11 TraesCS6D01G101300 chr1B 93.253 578 39 0 1641 2218 448520088 448520665 0.000000e+00 852
12 TraesCS6D01G101300 chr6B 96.598 1558 45 5 984 2540 61199437 61200987 0.000000e+00 2577
13 TraesCS6D01G101300 chr6B 93.299 1567 68 12 1630 3175 238145239 238146789 0.000000e+00 2278
14 TraesCS6D01G101300 chr6B 87.800 1918 159 42 630 2483 12465846 12467752 0.000000e+00 2176
15 TraesCS6D01G101300 chr6B 95.165 786 31 3 2459 3244 61200879 61201657 0.000000e+00 1234
16 TraesCS6D01G101300 chrUn 94.110 1579 69 11 1611 3175 97175501 97177069 0.000000e+00 2379
17 TraesCS6D01G101300 chrUn 92.840 1662 83 15 1611 3244 97255845 97257498 0.000000e+00 2377
18 TraesCS6D01G101300 chr3B 87.935 1981 168 40 598 2529 638378116 638380074 0.000000e+00 2268
19 TraesCS6D01G101300 chr3B 89.935 924 79 11 1622 2540 470856741 470857655 0.000000e+00 1179
20 TraesCS6D01G101300 chr3B 85.498 1055 90 27 611 1650 609896880 609897886 0.000000e+00 1042
21 TraesCS6D01G101300 chr3B 85.262 916 92 27 612 1496 470855787 470856690 0.000000e+00 904
22 TraesCS6D01G101300 chr5B 88.384 1894 147 30 612 2449 708182153 708180277 0.000000e+00 2211
23 TraesCS6D01G101300 chr5B 88.133 1896 152 26 612 2476 498513971 498515824 0.000000e+00 2187
24 TraesCS6D01G101300 chr1D 87.461 1922 142 47 610 2468 828937 830822 0.000000e+00 2122
25 TraesCS6D01G101300 chr7D 91.979 1521 76 10 1611 3096 46571419 46572928 0.000000e+00 2091
26 TraesCS6D01G101300 chr5A 92.570 1319 68 7 1612 2908 574040266 574038956 0.000000e+00 1866
27 TraesCS6D01G101300 chr5A 86.218 907 96 19 612 1495 647551125 647552025 0.000000e+00 955
28 TraesCS6D01G101300 chr5A 86.013 908 96 21 612 1495 701985671 701984771 0.000000e+00 944
29 TraesCS6D01G101300 chr6A 91.207 1342 85 15 1763 3087 536675996 536677321 0.000000e+00 1794
30 TraesCS6D01G101300 chr4B 88.593 938 87 14 608 1535 37138126 37139053 0.000000e+00 1122
31 TraesCS6D01G101300 chr2B 91.747 727 47 5 899 1614 80103312 80102588 0.000000e+00 998
32 TraesCS6D01G101300 chr4A 86.123 908 96 20 612 1495 521945178 521946079 0.000000e+00 952
33 TraesCS6D01G101300 chr4A 89.433 653 32 5 1406 2021 708366445 708365793 0.000000e+00 789
34 TraesCS6D01G101300 chr2A 85.589 909 99 22 612 1495 461392281 461393182 0.000000e+00 924
35 TraesCS6D01G101300 chr3A 85.006 907 107 19 612 1495 37632900 37633800 0.000000e+00 894


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G101300 chr6D 63805154 63808397 3243 False 5991.0 5991 100.0000 1 3244 1 chr6D.!!$F1 3243
1 TraesCS6D01G101300 chr6D 447819069 447820555 1486 False 2194.0 2194 93.4400 1611 3087 1 chr6D.!!$F2 1476
2 TraesCS6D01G101300 chr5D 274114126 274116787 2661 False 3456.0 3456 90.4830 612 3227 1 chr5D.!!$F1 2615
3 TraesCS6D01G101300 chr5D 114469707 114471258 1551 True 2290.0 2290 93.3590 1611 3162 1 chr5D.!!$R1 1551
4 TraesCS6D01G101300 chr5D 398261112 398262585 1473 True 2058.0 2058 91.9810 1620 3087 1 chr5D.!!$R2 1467
5 TraesCS6D01G101300 chr5D 494244543 494245452 909 True 987.0 987 86.7760 612 1495 1 chr5D.!!$R3 883
6 TraesCS6D01G101300 chr1B 647921946 647923506 1560 True 2584.0 2584 96.4900 974 2540 1 chr1B.!!$R3 1566
7 TraesCS6D01G101300 chr1B 572990479 572992375 1896 True 2237.0 2237 88.0940 607 2529 1 chr1B.!!$R2 1922
8 TraesCS6D01G101300 chr1B 529697260 529698772 1512 True 2037.0 2037 91.0750 1647 3162 1 chr1B.!!$R1 1515
9 TraesCS6D01G101300 chr1B 557113963 557115507 1544 False 1672.0 1672 86.6580 973 2498 1 chr1B.!!$F2 1525
10 TraesCS6D01G101300 chr1B 448520088 448520665 577 False 852.0 852 93.2530 1641 2218 1 chr1B.!!$F1 577
11 TraesCS6D01G101300 chr6B 238145239 238146789 1550 False 2278.0 2278 93.2990 1630 3175 1 chr6B.!!$F2 1545
12 TraesCS6D01G101300 chr6B 12465846 12467752 1906 False 2176.0 2176 87.8000 630 2483 1 chr6B.!!$F1 1853
13 TraesCS6D01G101300 chr6B 61199437 61201657 2220 False 1905.5 2577 95.8815 984 3244 2 chr6B.!!$F3 2260
14 TraesCS6D01G101300 chrUn 97175501 97177069 1568 False 2379.0 2379 94.1100 1611 3175 1 chrUn.!!$F1 1564
15 TraesCS6D01G101300 chrUn 97255845 97257498 1653 False 2377.0 2377 92.8400 1611 3244 1 chrUn.!!$F2 1633
16 TraesCS6D01G101300 chr3B 638378116 638380074 1958 False 2268.0 2268 87.9350 598 2529 1 chr3B.!!$F2 1931
17 TraesCS6D01G101300 chr3B 609896880 609897886 1006 False 1042.0 1042 85.4980 611 1650 1 chr3B.!!$F1 1039
18 TraesCS6D01G101300 chr3B 470855787 470857655 1868 False 1041.5 1179 87.5985 612 2540 2 chr3B.!!$F3 1928
19 TraesCS6D01G101300 chr5B 708180277 708182153 1876 True 2211.0 2211 88.3840 612 2449 1 chr5B.!!$R1 1837
20 TraesCS6D01G101300 chr5B 498513971 498515824 1853 False 2187.0 2187 88.1330 612 2476 1 chr5B.!!$F1 1864
21 TraesCS6D01G101300 chr1D 828937 830822 1885 False 2122.0 2122 87.4610 610 2468 1 chr1D.!!$F1 1858
22 TraesCS6D01G101300 chr7D 46571419 46572928 1509 False 2091.0 2091 91.9790 1611 3096 1 chr7D.!!$F1 1485
23 TraesCS6D01G101300 chr5A 574038956 574040266 1310 True 1866.0 1866 92.5700 1612 2908 1 chr5A.!!$R1 1296
24 TraesCS6D01G101300 chr5A 647551125 647552025 900 False 955.0 955 86.2180 612 1495 1 chr5A.!!$F1 883
25 TraesCS6D01G101300 chr5A 701984771 701985671 900 True 944.0 944 86.0130 612 1495 1 chr5A.!!$R2 883
26 TraesCS6D01G101300 chr6A 536675996 536677321 1325 False 1794.0 1794 91.2070 1763 3087 1 chr6A.!!$F1 1324
27 TraesCS6D01G101300 chr4B 37138126 37139053 927 False 1122.0 1122 88.5930 608 1535 1 chr4B.!!$F1 927
28 TraesCS6D01G101300 chr2B 80102588 80103312 724 True 998.0 998 91.7470 899 1614 1 chr2B.!!$R1 715
29 TraesCS6D01G101300 chr4A 521945178 521946079 901 False 952.0 952 86.1230 612 1495 1 chr4A.!!$F1 883
30 TraesCS6D01G101300 chr4A 708365793 708366445 652 True 789.0 789 89.4330 1406 2021 1 chr4A.!!$R1 615
31 TraesCS6D01G101300 chr2A 461392281 461393182 901 False 924.0 924 85.5890 612 1495 1 chr2A.!!$F1 883
32 TraesCS6D01G101300 chr3A 37632900 37633800 900 False 894.0 894 85.0060 612 1495 1 chr3A.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 752 0.038526 CGGTGACTAGCGGTTGAACT 60.039 55.0 2.41 0.0 43.63 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 3029 1.780309 TGGTGGAGTCATTGGGAAAGT 59.22 47.619 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.969260 AGATGCAATATGTATGTTCTTTCAGA 57.031 30.769 0.00 0.00 0.00 3.27
61 62 9.399797 AGATGCAATATGTATGTTCTTTCAGAA 57.600 29.630 0.00 0.00 0.00 3.02
74 75 8.924511 TGTTCTTTCAGAATATTCCTTTCACT 57.075 30.769 11.92 0.00 36.50 3.41
75 76 9.354673 TGTTCTTTCAGAATATTCCTTTCACTT 57.645 29.630 11.92 0.00 36.50 3.16
98 99 3.648339 TTTTTCTCTGATGCCAAGTGC 57.352 42.857 0.00 0.00 41.77 4.40
111 112 4.701956 GCCAAGTGCAGTATTTGTGTAT 57.298 40.909 0.00 0.00 40.77 2.29
112 113 5.811399 GCCAAGTGCAGTATTTGTGTATA 57.189 39.130 0.00 0.00 40.77 1.47
113 114 5.569413 GCCAAGTGCAGTATTTGTGTATAC 58.431 41.667 0.00 0.00 40.77 1.47
114 115 5.448632 GCCAAGTGCAGTATTTGTGTATACC 60.449 44.000 0.00 0.00 40.77 2.73
115 116 5.645929 CCAAGTGCAGTATTTGTGTATACCA 59.354 40.000 0.00 0.00 32.54 3.25
116 117 6.183360 CCAAGTGCAGTATTTGTGTATACCAG 60.183 42.308 0.00 0.00 32.54 4.00
117 118 6.049955 AGTGCAGTATTTGTGTATACCAGT 57.950 37.500 0.00 0.00 32.54 4.00
118 119 7.177832 AGTGCAGTATTTGTGTATACCAGTA 57.822 36.000 0.00 0.00 32.54 2.74
119 120 7.617225 AGTGCAGTATTTGTGTATACCAGTAA 58.383 34.615 0.00 0.00 32.54 2.24
120 121 8.098286 AGTGCAGTATTTGTGTATACCAGTAAA 58.902 33.333 0.00 0.00 32.54 2.01
121 122 8.723311 GTGCAGTATTTGTGTATACCAGTAAAA 58.277 33.333 0.00 0.00 32.54 1.52
122 123 9.286170 TGCAGTATTTGTGTATACCAGTAAAAA 57.714 29.630 0.00 0.00 32.54 1.94
130 131 9.968870 TTGTGTATACCAGTAAAAATGGAAAAC 57.031 29.630 0.00 0.00 40.51 2.43
131 132 8.291032 TGTGTATACCAGTAAAAATGGAAAACG 58.709 33.333 0.00 0.00 40.51 3.60
132 133 8.291740 GTGTATACCAGTAAAAATGGAAAACGT 58.708 33.333 0.00 0.00 40.51 3.99
133 134 8.291032 TGTATACCAGTAAAAATGGAAAACGTG 58.709 33.333 0.00 0.00 40.51 4.49
134 135 5.585820 ACCAGTAAAAATGGAAAACGTGT 57.414 34.783 0.00 0.00 40.51 4.49
135 136 5.344884 ACCAGTAAAAATGGAAAACGTGTG 58.655 37.500 0.00 0.00 40.51 3.82
136 137 5.125739 ACCAGTAAAAATGGAAAACGTGTGA 59.874 36.000 0.00 0.00 40.51 3.58
137 138 6.037098 CCAGTAAAAATGGAAAACGTGTGAA 58.963 36.000 0.00 0.00 40.51 3.18
138 139 6.531948 CCAGTAAAAATGGAAAACGTGTGAAA 59.468 34.615 0.00 0.00 40.51 2.69
139 140 7.387945 CAGTAAAAATGGAAAACGTGTGAAAC 58.612 34.615 0.00 0.00 37.35 2.78
155 156 6.767524 TGTGAAACATCACCAAAAGTTACT 57.232 33.333 6.51 0.00 45.67 2.24
156 157 7.164230 TGTGAAACATCACCAAAAGTTACTT 57.836 32.000 6.51 0.00 45.67 2.24
157 158 7.607250 TGTGAAACATCACCAAAAGTTACTTT 58.393 30.769 4.30 4.30 45.67 2.66
158 159 8.091449 TGTGAAACATCACCAAAAGTTACTTTT 58.909 29.630 16.34 16.34 45.67 2.27
159 160 8.379902 GTGAAACATCACCAAAAGTTACTTTTG 58.620 33.333 31.98 31.98 46.49 2.44
173 174 8.996024 AAGTTACTTTTGCTGTAAAATGTTGT 57.004 26.923 4.15 2.27 37.61 3.32
177 178 9.856488 TTACTTTTGCTGTAAAATGTTGTAACA 57.144 25.926 4.15 0.00 44.06 2.41
178 179 8.764524 ACTTTTGCTGTAAAATGTTGTAACAA 57.235 26.923 4.15 0.00 43.03 2.83
179 180 9.209175 ACTTTTGCTGTAAAATGTTGTAACAAA 57.791 25.926 4.15 0.00 43.03 2.83
182 183 8.764524 TTGCTGTAAAATGTTGTAACAAAAGT 57.235 26.923 1.10 0.00 43.03 2.66
183 184 8.401046 TGCTGTAAAATGTTGTAACAAAAGTC 57.599 30.769 1.10 0.00 43.03 3.01
184 185 8.029522 TGCTGTAAAATGTTGTAACAAAAGTCA 58.970 29.630 1.10 0.00 43.03 3.41
185 186 9.030301 GCTGTAAAATGTTGTAACAAAAGTCAT 57.970 29.630 1.10 0.00 43.03 3.06
191 192 7.642071 ATGTTGTAACAAAAGTCATTGATGC 57.358 32.000 1.10 0.00 43.03 3.91
192 193 6.804677 TGTTGTAACAAAAGTCATTGATGCT 58.195 32.000 0.00 0.00 35.67 3.79
193 194 6.696583 TGTTGTAACAAAAGTCATTGATGCTG 59.303 34.615 0.00 0.00 35.67 4.41
194 195 6.631971 TGTAACAAAAGTCATTGATGCTGA 57.368 33.333 0.00 0.00 34.38 4.26
195 196 6.671190 TGTAACAAAAGTCATTGATGCTGAG 58.329 36.000 0.00 0.00 34.38 3.35
196 197 6.486320 TGTAACAAAAGTCATTGATGCTGAGA 59.514 34.615 0.00 0.00 34.38 3.27
197 198 6.395426 AACAAAAGTCATTGATGCTGAGAA 57.605 33.333 0.00 0.00 34.38 2.87
198 199 6.585695 ACAAAAGTCATTGATGCTGAGAAT 57.414 33.333 0.00 0.00 34.38 2.40
199 200 6.387465 ACAAAAGTCATTGATGCTGAGAATG 58.613 36.000 0.00 0.00 34.38 2.67
200 201 6.015688 ACAAAAGTCATTGATGCTGAGAATGT 60.016 34.615 0.00 0.00 34.38 2.71
201 202 6.585695 AAAGTCATTGATGCTGAGAATGTT 57.414 33.333 0.00 0.00 0.00 2.71
202 203 5.562506 AGTCATTGATGCTGAGAATGTTG 57.437 39.130 0.00 0.00 0.00 3.33
203 204 5.250982 AGTCATTGATGCTGAGAATGTTGA 58.749 37.500 0.00 0.00 0.00 3.18
204 205 5.354513 AGTCATTGATGCTGAGAATGTTGAG 59.645 40.000 0.00 0.00 0.00 3.02
205 206 5.353400 GTCATTGATGCTGAGAATGTTGAGA 59.647 40.000 0.00 0.00 0.00 3.27
206 207 5.941647 TCATTGATGCTGAGAATGTTGAGAA 59.058 36.000 0.00 0.00 0.00 2.87
207 208 6.431852 TCATTGATGCTGAGAATGTTGAGAAA 59.568 34.615 0.00 0.00 0.00 2.52
208 209 6.638096 TTGATGCTGAGAATGTTGAGAAAA 57.362 33.333 0.00 0.00 0.00 2.29
209 210 6.250344 TGATGCTGAGAATGTTGAGAAAAG 57.750 37.500 0.00 0.00 0.00 2.27
210 211 4.494350 TGCTGAGAATGTTGAGAAAAGC 57.506 40.909 0.00 0.00 0.00 3.51
211 212 4.139786 TGCTGAGAATGTTGAGAAAAGCT 58.860 39.130 0.00 0.00 0.00 3.74
212 213 5.308014 TGCTGAGAATGTTGAGAAAAGCTA 58.692 37.500 0.00 0.00 0.00 3.32
213 214 5.942236 TGCTGAGAATGTTGAGAAAAGCTAT 59.058 36.000 0.00 0.00 0.00 2.97
214 215 7.105588 TGCTGAGAATGTTGAGAAAAGCTATA 58.894 34.615 0.00 0.00 0.00 1.31
215 216 7.065085 TGCTGAGAATGTTGAGAAAAGCTATAC 59.935 37.037 0.00 0.00 0.00 1.47
216 217 7.279758 GCTGAGAATGTTGAGAAAAGCTATACT 59.720 37.037 0.00 0.00 0.00 2.12
217 218 8.709386 TGAGAATGTTGAGAAAAGCTATACTC 57.291 34.615 0.00 0.00 0.00 2.59
218 219 7.489435 TGAGAATGTTGAGAAAAGCTATACTCG 59.511 37.037 0.00 0.00 32.81 4.18
219 220 7.324178 AGAATGTTGAGAAAAGCTATACTCGT 58.676 34.615 0.00 0.00 32.81 4.18
220 221 7.489757 AGAATGTTGAGAAAAGCTATACTCGTC 59.510 37.037 0.00 0.00 32.81 4.20
221 222 6.020971 TGTTGAGAAAAGCTATACTCGTCA 57.979 37.500 0.00 0.00 32.81 4.35
222 223 6.452242 TGTTGAGAAAAGCTATACTCGTCAA 58.548 36.000 0.00 0.00 32.81 3.18
223 224 7.097192 TGTTGAGAAAAGCTATACTCGTCAAT 58.903 34.615 0.00 0.00 32.81 2.57
224 225 7.275779 TGTTGAGAAAAGCTATACTCGTCAATC 59.724 37.037 0.00 0.00 32.81 2.67
225 226 5.971792 TGAGAAAAGCTATACTCGTCAATCG 59.028 40.000 0.00 0.00 41.41 3.34
226 227 6.132791 AGAAAAGCTATACTCGTCAATCGA 57.867 37.500 0.00 0.00 46.83 3.59
237 238 4.777140 TCGTCAATCGATAAGCATGTTG 57.223 40.909 0.00 0.00 44.01 3.33
238 239 4.429108 TCGTCAATCGATAAGCATGTTGA 58.571 39.130 0.00 0.00 44.01 3.18
239 240 4.867608 TCGTCAATCGATAAGCATGTTGAA 59.132 37.500 0.00 0.00 44.01 2.69
240 241 4.957967 CGTCAATCGATAAGCATGTTGAAC 59.042 41.667 0.00 0.00 42.86 3.18
241 242 5.445806 CGTCAATCGATAAGCATGTTGAACA 60.446 40.000 0.00 0.00 42.86 3.18
242 243 6.489675 GTCAATCGATAAGCATGTTGAACAT 58.510 36.000 4.72 4.72 39.91 2.71
243 244 6.968904 GTCAATCGATAAGCATGTTGAACATT 59.031 34.615 8.30 0.00 36.53 2.71
244 245 7.164826 GTCAATCGATAAGCATGTTGAACATTC 59.835 37.037 8.30 3.70 36.53 2.67
245 246 6.682423 ATCGATAAGCATGTTGAACATTCA 57.318 33.333 8.30 0.00 36.53 2.57
246 247 6.110543 TCGATAAGCATGTTGAACATTCAG 57.889 37.500 8.30 0.00 36.53 3.02
247 248 4.731961 CGATAAGCATGTTGAACATTCAGC 59.268 41.667 8.30 9.38 36.53 4.26
248 249 5.448225 CGATAAGCATGTTGAACATTCAGCT 60.448 40.000 13.76 13.76 36.53 4.24
249 250 3.570926 AGCATGTTGAACATTCAGCTG 57.429 42.857 17.42 7.63 36.53 4.24
250 251 2.230508 AGCATGTTGAACATTCAGCTGG 59.769 45.455 17.42 0.00 36.53 4.85
251 252 2.602878 CATGTTGAACATTCAGCTGGC 58.397 47.619 15.13 0.00 36.53 4.85
252 253 1.985473 TGTTGAACATTCAGCTGGCT 58.015 45.000 15.13 0.00 38.92 4.75
253 254 3.138884 TGTTGAACATTCAGCTGGCTA 57.861 42.857 15.13 0.00 38.92 3.93
254 255 3.076621 TGTTGAACATTCAGCTGGCTAG 58.923 45.455 15.13 4.38 38.92 3.42
255 256 5.932351 ATGTTGAACATTCAGCTGGCTAGC 61.932 45.833 15.23 15.23 42.43 3.42
263 264 3.810812 GCTGGCTAGCTGCTCAAG 58.189 61.111 15.78 0.00 46.57 3.02
264 265 1.818785 GCTGGCTAGCTGCTCAAGG 60.819 63.158 15.78 0.00 46.57 3.61
265 266 1.601171 CTGGCTAGCTGCTCAAGGT 59.399 57.895 15.72 0.00 42.39 3.50
266 267 0.461693 CTGGCTAGCTGCTCAAGGTC 60.462 60.000 15.72 0.00 42.39 3.85
267 268 1.153269 GGCTAGCTGCTCAAGGTCC 60.153 63.158 15.72 0.00 42.39 4.46
268 269 1.621672 GGCTAGCTGCTCAAGGTCCT 61.622 60.000 15.72 0.00 42.39 3.85
269 270 0.251634 GCTAGCTGCTCAAGGTCCTT 59.748 55.000 4.91 0.00 37.85 3.36
270 271 1.339535 GCTAGCTGCTCAAGGTCCTTT 60.340 52.381 4.91 0.00 37.85 3.11
271 272 2.877708 GCTAGCTGCTCAAGGTCCTTTT 60.878 50.000 4.91 0.00 37.85 2.27
272 273 2.371658 AGCTGCTCAAGGTCCTTTTT 57.628 45.000 0.00 0.00 27.29 1.94
312 313 8.958119 TCTCTGTTTATTGTGTTTTCTGTAGT 57.042 30.769 0.00 0.00 0.00 2.73
313 314 9.391006 TCTCTGTTTATTGTGTTTTCTGTAGTT 57.609 29.630 0.00 0.00 0.00 2.24
315 316 9.997482 TCTGTTTATTGTGTTTTCTGTAGTTTC 57.003 29.630 0.00 0.00 0.00 2.78
316 317 9.781834 CTGTTTATTGTGTTTTCTGTAGTTTCA 57.218 29.630 0.00 0.00 0.00 2.69
317 318 9.562583 TGTTTATTGTGTTTTCTGTAGTTTCAC 57.437 29.630 0.00 0.00 0.00 3.18
318 319 9.016623 GTTTATTGTGTTTTCTGTAGTTTCACC 57.983 33.333 0.00 0.00 0.00 4.02
319 320 5.570234 TTGTGTTTTCTGTAGTTTCACCC 57.430 39.130 0.00 0.00 0.00 4.61
320 321 3.949113 TGTGTTTTCTGTAGTTTCACCCC 59.051 43.478 0.00 0.00 0.00 4.95
321 322 4.204799 GTGTTTTCTGTAGTTTCACCCCT 58.795 43.478 0.00 0.00 0.00 4.79
322 323 4.036380 GTGTTTTCTGTAGTTTCACCCCTG 59.964 45.833 0.00 0.00 0.00 4.45
323 324 3.502123 TTTCTGTAGTTTCACCCCTGG 57.498 47.619 0.00 0.00 0.00 4.45
324 325 1.358152 TCTGTAGTTTCACCCCTGGG 58.642 55.000 5.50 5.50 42.03 4.45
325 326 0.322546 CTGTAGTTTCACCCCTGGGC 60.323 60.000 7.39 0.00 39.32 5.36
326 327 1.001269 GTAGTTTCACCCCTGGGCC 60.001 63.158 7.39 0.00 39.32 5.80
327 328 1.151677 TAGTTTCACCCCTGGGCCT 60.152 57.895 7.39 0.00 39.32 5.19
328 329 0.119561 TAGTTTCACCCCTGGGCCTA 59.880 55.000 7.39 0.00 39.32 3.93
329 330 0.552615 AGTTTCACCCCTGGGCCTAT 60.553 55.000 7.39 0.00 39.32 2.57
330 331 0.395724 GTTTCACCCCTGGGCCTATG 60.396 60.000 7.39 2.67 39.32 2.23
331 332 2.223464 TTTCACCCCTGGGCCTATGC 62.223 60.000 7.39 0.00 39.32 3.14
332 333 3.419580 CACCCCTGGGCCTATGCA 61.420 66.667 7.39 0.00 40.13 3.96
333 334 3.099170 ACCCCTGGGCCTATGCAG 61.099 66.667 7.39 0.34 40.13 4.41
334 335 4.593125 CCCCTGGGCCTATGCAGC 62.593 72.222 7.39 0.00 40.13 5.25
341 342 4.643795 GCCTATGCAGCCAGACAA 57.356 55.556 0.00 0.00 37.47 3.18
342 343 2.101700 GCCTATGCAGCCAGACAAC 58.898 57.895 0.00 0.00 37.47 3.32
343 344 1.379642 GCCTATGCAGCCAGACAACC 61.380 60.000 0.00 0.00 37.47 3.77
344 345 0.254178 CCTATGCAGCCAGACAACCT 59.746 55.000 0.00 0.00 0.00 3.50
345 346 1.376543 CTATGCAGCCAGACAACCTG 58.623 55.000 0.00 0.00 42.55 4.00
346 347 0.983467 TATGCAGCCAGACAACCTGA 59.017 50.000 0.00 0.00 45.78 3.86
347 348 0.330604 ATGCAGCCAGACAACCTGAT 59.669 50.000 0.00 0.00 45.78 2.90
348 349 0.607217 TGCAGCCAGACAACCTGATG 60.607 55.000 0.00 0.00 45.78 3.07
349 350 0.321919 GCAGCCAGACAACCTGATGA 60.322 55.000 0.00 0.00 45.78 2.92
350 351 1.735386 CAGCCAGACAACCTGATGAG 58.265 55.000 0.00 0.00 45.78 2.90
351 352 1.002888 CAGCCAGACAACCTGATGAGT 59.997 52.381 0.00 0.00 45.78 3.41
352 353 1.002888 AGCCAGACAACCTGATGAGTG 59.997 52.381 0.00 0.00 45.78 3.51
353 354 1.002430 GCCAGACAACCTGATGAGTGA 59.998 52.381 0.00 0.00 45.78 3.41
354 355 2.550855 GCCAGACAACCTGATGAGTGAA 60.551 50.000 0.00 0.00 45.78 3.18
355 356 3.743521 CCAGACAACCTGATGAGTGAAA 58.256 45.455 0.00 0.00 45.78 2.69
356 357 4.136796 CCAGACAACCTGATGAGTGAAAA 58.863 43.478 0.00 0.00 45.78 2.29
357 358 4.023707 CCAGACAACCTGATGAGTGAAAAC 60.024 45.833 0.00 0.00 45.78 2.43
358 359 4.818546 CAGACAACCTGATGAGTGAAAACT 59.181 41.667 0.00 0.00 45.78 2.66
359 360 4.818546 AGACAACCTGATGAGTGAAAACTG 59.181 41.667 0.00 0.00 0.00 3.16
360 361 3.885297 ACAACCTGATGAGTGAAAACTGG 59.115 43.478 0.00 0.00 0.00 4.00
361 362 3.864789 ACCTGATGAGTGAAAACTGGT 57.135 42.857 0.00 0.00 0.00 4.00
362 363 3.480470 ACCTGATGAGTGAAAACTGGTG 58.520 45.455 0.00 0.00 33.05 4.17
363 364 2.816087 CCTGATGAGTGAAAACTGGTGG 59.184 50.000 0.00 0.00 0.00 4.61
364 365 3.496692 CCTGATGAGTGAAAACTGGTGGA 60.497 47.826 0.00 0.00 0.00 4.02
365 366 4.136796 CTGATGAGTGAAAACTGGTGGAA 58.863 43.478 0.00 0.00 0.00 3.53
366 367 3.882888 TGATGAGTGAAAACTGGTGGAAC 59.117 43.478 0.00 0.00 0.00 3.62
382 383 5.183014 GTGGAACCAGGAAGTTTTACTTG 57.817 43.478 0.00 0.00 38.80 3.16
383 384 4.037565 GTGGAACCAGGAAGTTTTACTTGG 59.962 45.833 0.00 0.00 38.80 3.61
384 385 4.212716 GGAACCAGGAAGTTTTACTTGGT 58.787 43.478 0.00 0.00 45.84 3.67
387 388 5.125367 ACCAGGAAGTTTTACTTGGTTCT 57.875 39.130 0.00 0.00 42.34 3.01
388 389 4.887655 ACCAGGAAGTTTTACTTGGTTCTG 59.112 41.667 0.00 0.89 42.34 3.02
389 390 5.130350 CCAGGAAGTTTTACTTGGTTCTGA 58.870 41.667 0.00 0.00 38.80 3.27
390 391 5.770162 CCAGGAAGTTTTACTTGGTTCTGAT 59.230 40.000 0.00 0.00 38.80 2.90
391 392 6.072452 CCAGGAAGTTTTACTTGGTTCTGATC 60.072 42.308 0.00 0.00 38.80 2.92
392 393 6.486657 CAGGAAGTTTTACTTGGTTCTGATCA 59.513 38.462 0.00 0.00 38.80 2.92
393 394 7.175641 CAGGAAGTTTTACTTGGTTCTGATCAT 59.824 37.037 0.00 0.00 38.80 2.45
394 395 7.725844 AGGAAGTTTTACTTGGTTCTGATCATT 59.274 33.333 0.00 0.00 38.80 2.57
395 396 8.023706 GGAAGTTTTACTTGGTTCTGATCATTC 58.976 37.037 0.00 0.00 38.80 2.67
396 397 8.463930 AAGTTTTACTTGGTTCTGATCATTCA 57.536 30.769 0.00 0.00 37.00 2.57
397 398 8.641498 AGTTTTACTTGGTTCTGATCATTCAT 57.359 30.769 0.00 0.00 0.00 2.57
398 399 9.739276 AGTTTTACTTGGTTCTGATCATTCATA 57.261 29.630 0.00 0.00 0.00 2.15
407 408 7.256756 GTTCTGATCATTCATAACCAAGGAG 57.743 40.000 0.00 0.00 34.52 3.69
408 409 5.933617 TCTGATCATTCATAACCAAGGAGG 58.066 41.667 0.00 0.00 45.67 4.30
409 410 5.052693 TGATCATTCATAACCAAGGAGGG 57.947 43.478 0.00 0.00 43.89 4.30
410 411 4.478317 TGATCATTCATAACCAAGGAGGGT 59.522 41.667 0.00 0.00 45.04 4.34
417 418 1.454539 ACCAAGGAGGGTTTGTCCG 59.545 57.895 0.00 0.00 43.89 4.79
418 419 1.303317 CCAAGGAGGGTTTGTCCGG 60.303 63.158 0.00 0.00 39.30 5.14
419 420 1.971695 CAAGGAGGGTTTGTCCGGC 60.972 63.158 0.00 0.00 39.30 6.13
420 421 2.457323 AAGGAGGGTTTGTCCGGCA 61.457 57.895 0.00 0.00 39.30 5.69
421 422 2.671963 GGAGGGTTTGTCCGGCAC 60.672 66.667 0.00 0.00 37.00 5.01
422 423 2.112297 GAGGGTTTGTCCGGCACA 59.888 61.111 0.00 0.00 37.00 4.57
423 424 1.303317 GAGGGTTTGTCCGGCACAT 60.303 57.895 0.00 0.00 33.90 3.21
424 425 1.586154 GAGGGTTTGTCCGGCACATG 61.586 60.000 0.00 0.00 33.90 3.21
425 426 1.602323 GGGTTTGTCCGGCACATGA 60.602 57.895 0.00 0.00 33.90 3.07
426 427 1.175983 GGGTTTGTCCGGCACATGAA 61.176 55.000 0.00 0.00 33.90 2.57
427 428 0.671251 GGTTTGTCCGGCACATGAAA 59.329 50.000 0.00 0.00 33.90 2.69
428 429 1.601914 GGTTTGTCCGGCACATGAAAC 60.602 52.381 0.00 4.29 33.90 2.78
429 430 1.066303 GTTTGTCCGGCACATGAAACA 59.934 47.619 0.00 0.00 33.90 2.83
430 431 1.393603 TTGTCCGGCACATGAAACAA 58.606 45.000 0.00 0.00 33.90 2.83
431 432 1.393603 TGTCCGGCACATGAAACAAA 58.606 45.000 0.00 0.00 0.00 2.83
432 433 1.751351 TGTCCGGCACATGAAACAAAA 59.249 42.857 0.00 0.00 0.00 2.44
433 434 2.166459 TGTCCGGCACATGAAACAAAAA 59.834 40.909 0.00 0.00 0.00 1.94
434 435 2.794350 GTCCGGCACATGAAACAAAAAG 59.206 45.455 0.00 0.00 0.00 2.27
435 436 2.134346 CCGGCACATGAAACAAAAAGG 58.866 47.619 0.00 0.00 0.00 3.11
436 437 2.223923 CCGGCACATGAAACAAAAAGGA 60.224 45.455 0.00 0.00 0.00 3.36
437 438 3.554752 CCGGCACATGAAACAAAAAGGAT 60.555 43.478 0.00 0.00 0.00 3.24
438 439 3.429543 CGGCACATGAAACAAAAAGGATG 59.570 43.478 0.00 0.00 0.00 3.51
439 440 4.379652 GGCACATGAAACAAAAAGGATGT 58.620 39.130 0.00 0.00 0.00 3.06
440 441 4.211794 GGCACATGAAACAAAAAGGATGTG 59.788 41.667 0.00 0.00 42.25 3.21
441 442 5.333046 CACATGAAACAAAAAGGATGTGC 57.667 39.130 0.00 0.00 35.64 4.57
442 443 4.809958 CACATGAAACAAAAAGGATGTGCA 59.190 37.500 0.00 0.00 35.64 4.57
443 444 5.467399 CACATGAAACAAAAAGGATGTGCAT 59.533 36.000 0.00 0.00 35.64 3.96
444 445 6.645827 CACATGAAACAAAAAGGATGTGCATA 59.354 34.615 0.00 0.00 35.64 3.14
445 446 7.171167 CACATGAAACAAAAAGGATGTGCATAA 59.829 33.333 0.00 0.00 35.64 1.90
446 447 7.879160 ACATGAAACAAAAAGGATGTGCATAAT 59.121 29.630 0.00 0.00 30.32 1.28
447 448 7.887996 TGAAACAAAAAGGATGTGCATAATC 57.112 32.000 0.00 0.00 0.00 1.75
448 449 6.873076 TGAAACAAAAAGGATGTGCATAATCC 59.127 34.615 19.02 19.02 43.47 3.01
453 454 2.283145 GGATGTGCATAATCCTGCCT 57.717 50.000 19.26 0.00 41.58 4.75
454 455 1.884579 GGATGTGCATAATCCTGCCTG 59.115 52.381 19.26 0.00 41.58 4.85
455 456 1.884579 GATGTGCATAATCCTGCCTGG 59.115 52.381 0.00 0.00 41.58 4.45
456 457 0.752743 TGTGCATAATCCTGCCTGGC 60.753 55.000 12.87 12.87 41.58 4.85
457 458 0.466922 GTGCATAATCCTGCCTGGCT 60.467 55.000 21.03 0.83 41.58 4.75
458 459 1.139439 TGCATAATCCTGCCTGGCTA 58.861 50.000 21.03 3.45 41.58 3.93
459 460 1.494296 TGCATAATCCTGCCTGGCTAA 59.506 47.619 21.03 5.45 41.58 3.09
460 461 2.108776 TGCATAATCCTGCCTGGCTAAT 59.891 45.455 21.03 7.67 41.58 1.73
461 462 3.160269 GCATAATCCTGCCTGGCTAATT 58.840 45.455 21.03 17.21 36.10 1.40
462 463 3.575687 GCATAATCCTGCCTGGCTAATTT 59.424 43.478 21.03 10.88 36.10 1.82
463 464 4.039609 GCATAATCCTGCCTGGCTAATTTT 59.960 41.667 21.03 9.53 36.10 1.82
464 465 5.776744 CATAATCCTGCCTGGCTAATTTTC 58.223 41.667 21.03 0.00 35.26 2.29
465 466 2.897271 TCCTGCCTGGCTAATTTTCA 57.103 45.000 21.03 0.00 35.26 2.69
466 467 3.386932 TCCTGCCTGGCTAATTTTCAT 57.613 42.857 21.03 0.00 35.26 2.57
467 468 3.290710 TCCTGCCTGGCTAATTTTCATC 58.709 45.455 21.03 0.00 35.26 2.92
468 469 3.053395 TCCTGCCTGGCTAATTTTCATCT 60.053 43.478 21.03 0.00 35.26 2.90
469 470 3.703052 CCTGCCTGGCTAATTTTCATCTT 59.297 43.478 21.03 0.00 0.00 2.40
470 471 4.889409 CCTGCCTGGCTAATTTTCATCTTA 59.111 41.667 21.03 0.00 0.00 2.10
471 472 5.360714 CCTGCCTGGCTAATTTTCATCTTAA 59.639 40.000 21.03 0.00 0.00 1.85
472 473 6.455360 TGCCTGGCTAATTTTCATCTTAAG 57.545 37.500 21.03 0.00 0.00 1.85
473 474 5.360714 TGCCTGGCTAATTTTCATCTTAAGG 59.639 40.000 21.03 0.00 0.00 2.69
474 475 5.360999 GCCTGGCTAATTTTCATCTTAAGGT 59.639 40.000 12.43 0.00 0.00 3.50
475 476 6.546034 GCCTGGCTAATTTTCATCTTAAGGTA 59.454 38.462 12.43 0.00 0.00 3.08
476 477 7.068226 GCCTGGCTAATTTTCATCTTAAGGTAA 59.932 37.037 12.43 0.00 0.00 2.85
477 478 9.136323 CCTGGCTAATTTTCATCTTAAGGTAAT 57.864 33.333 1.85 0.00 0.00 1.89
489 490 9.754382 TCATCTTAAGGTAATAACGGTTATGAC 57.246 33.333 16.87 16.87 0.00 3.06
490 491 9.760077 CATCTTAAGGTAATAACGGTTATGACT 57.240 33.333 21.96 14.10 29.31 3.41
491 492 9.760077 ATCTTAAGGTAATAACGGTTATGACTG 57.240 33.333 21.96 11.24 38.17 3.51
492 493 8.970020 TCTTAAGGTAATAACGGTTATGACTGA 58.030 33.333 21.96 12.72 36.01 3.41
493 494 9.760077 CTTAAGGTAATAACGGTTATGACTGAT 57.240 33.333 21.96 13.60 36.01 2.90
495 496 8.658499 AAGGTAATAACGGTTATGACTGATTC 57.342 34.615 21.96 9.68 36.01 2.52
496 497 8.019656 AGGTAATAACGGTTATGACTGATTCT 57.980 34.615 21.96 11.34 36.01 2.40
497 498 8.483758 AGGTAATAACGGTTATGACTGATTCTT 58.516 33.333 21.96 5.23 36.01 2.52
498 499 8.762426 GGTAATAACGGTTATGACTGATTCTTC 58.238 37.037 21.96 5.27 36.01 2.87
499 500 9.530633 GTAATAACGGTTATGACTGATTCTTCT 57.469 33.333 17.58 1.04 36.01 2.85
500 501 8.649973 AATAACGGTTATGACTGATTCTTCTC 57.350 34.615 13.77 0.00 36.01 2.87
501 502 5.923733 ACGGTTATGACTGATTCTTCTCT 57.076 39.130 3.02 0.00 36.01 3.10
502 503 5.655488 ACGGTTATGACTGATTCTTCTCTG 58.345 41.667 3.02 0.00 36.01 3.35
503 504 5.419155 ACGGTTATGACTGATTCTTCTCTGA 59.581 40.000 3.02 0.00 36.01 3.27
504 505 6.071334 ACGGTTATGACTGATTCTTCTCTGAA 60.071 38.462 3.02 0.00 36.01 3.02
505 506 6.475076 CGGTTATGACTGATTCTTCTCTGAAG 59.525 42.308 1.23 1.23 33.82 3.02
506 507 7.551585 GGTTATGACTGATTCTTCTCTGAAGA 58.448 38.462 5.97 5.97 0.00 2.87
507 508 8.037758 GGTTATGACTGATTCTTCTCTGAAGAA 58.962 37.037 20.41 20.41 40.17 2.52
508 509 9.429359 GTTATGACTGATTCTTCTCTGAAGAAA 57.571 33.333 21.51 9.51 40.95 2.52
509 510 9.650539 TTATGACTGATTCTTCTCTGAAGAAAG 57.349 33.333 21.51 17.90 40.95 2.62
510 511 7.060383 TGACTGATTCTTCTCTGAAGAAAGT 57.940 36.000 21.51 20.18 40.95 2.66
511 512 7.504403 TGACTGATTCTTCTCTGAAGAAAGTT 58.496 34.615 21.51 9.64 40.95 2.66
512 513 7.989741 TGACTGATTCTTCTCTGAAGAAAGTTT 59.010 33.333 21.51 9.35 40.95 2.66
513 514 8.152309 ACTGATTCTTCTCTGAAGAAAGTTTG 57.848 34.615 21.51 14.09 40.95 2.93
514 515 7.228308 ACTGATTCTTCTCTGAAGAAAGTTTGG 59.772 37.037 21.51 13.07 40.95 3.28
515 516 6.488006 TGATTCTTCTCTGAAGAAAGTTTGGG 59.512 38.462 21.51 0.00 40.95 4.12
516 517 5.373812 TCTTCTCTGAAGAAAGTTTGGGT 57.626 39.130 7.46 0.00 40.95 4.51
517 518 6.494666 TCTTCTCTGAAGAAAGTTTGGGTA 57.505 37.500 7.46 0.00 40.95 3.69
518 519 7.079451 TCTTCTCTGAAGAAAGTTTGGGTAT 57.921 36.000 7.46 0.00 40.95 2.73
519 520 7.162082 TCTTCTCTGAAGAAAGTTTGGGTATC 58.838 38.462 7.46 0.00 40.95 2.24
520 521 5.805728 TCTCTGAAGAAAGTTTGGGTATCC 58.194 41.667 0.00 0.00 0.00 2.59
521 522 4.918588 TCTGAAGAAAGTTTGGGTATCCC 58.081 43.478 0.00 0.00 45.71 3.85
522 523 4.601857 TCTGAAGAAAGTTTGGGTATCCCT 59.398 41.667 6.38 0.00 45.70 4.20
523 524 5.074515 TCTGAAGAAAGTTTGGGTATCCCTT 59.925 40.000 6.38 0.00 45.70 3.95
524 525 5.076873 TGAAGAAAGTTTGGGTATCCCTTG 58.923 41.667 6.38 0.00 45.70 3.61
525 526 4.741928 AGAAAGTTTGGGTATCCCTTGT 57.258 40.909 6.38 0.00 45.70 3.16
526 527 4.407365 AGAAAGTTTGGGTATCCCTTGTG 58.593 43.478 6.38 0.00 45.70 3.33
527 528 2.215942 AGTTTGGGTATCCCTTGTGC 57.784 50.000 6.38 0.00 45.70 4.57
528 529 1.427368 AGTTTGGGTATCCCTTGTGCA 59.573 47.619 6.38 0.00 45.70 4.57
529 530 1.818674 GTTTGGGTATCCCTTGTGCAG 59.181 52.381 6.38 0.00 45.70 4.41
530 531 1.072266 TTGGGTATCCCTTGTGCAGT 58.928 50.000 6.38 0.00 45.70 4.40
531 532 0.327924 TGGGTATCCCTTGTGCAGTG 59.672 55.000 6.38 0.00 45.70 3.66
532 533 1.032114 GGGTATCCCTTGTGCAGTGC 61.032 60.000 8.58 8.58 41.34 4.40
533 534 0.322456 GGTATCCCTTGTGCAGTGCA 60.322 55.000 15.37 15.37 35.60 4.57
534 535 1.533625 GTATCCCTTGTGCAGTGCAA 58.466 50.000 21.67 4.01 41.47 4.08
535 536 2.094675 GTATCCCTTGTGCAGTGCAAT 58.905 47.619 21.67 11.19 41.47 3.56
536 537 0.892755 ATCCCTTGTGCAGTGCAATG 59.107 50.000 21.67 10.38 41.47 2.82
537 538 1.180456 TCCCTTGTGCAGTGCAATGG 61.180 55.000 21.67 20.29 41.47 3.16
538 539 1.373748 CCTTGTGCAGTGCAATGGC 60.374 57.895 21.67 8.03 41.47 4.40
539 540 1.663739 CTTGTGCAGTGCAATGGCT 59.336 52.632 21.67 0.00 41.47 4.75
540 541 0.666274 CTTGTGCAGTGCAATGGCTG 60.666 55.000 21.67 6.99 41.47 4.85
541 542 1.108132 TTGTGCAGTGCAATGGCTGA 61.108 50.000 21.67 0.00 41.47 4.26
542 543 0.896479 TGTGCAGTGCAATGGCTGAT 60.896 50.000 21.67 0.00 41.47 2.90
543 544 0.179145 GTGCAGTGCAATGGCTGATC 60.179 55.000 21.67 0.00 41.47 2.92
544 545 0.323087 TGCAGTGCAATGGCTGATCT 60.323 50.000 17.26 0.00 41.91 2.75
545 546 0.815734 GCAGTGCAATGGCTGATCTT 59.184 50.000 16.93 0.00 41.91 2.40
546 547 1.469251 GCAGTGCAATGGCTGATCTTG 60.469 52.381 16.93 0.00 41.91 3.02
547 548 0.815734 AGTGCAATGGCTGATCTTGC 59.184 50.000 9.12 9.12 44.25 4.01
548 549 0.815734 GTGCAATGGCTGATCTTGCT 59.184 50.000 15.20 0.00 44.29 3.91
549 550 0.815095 TGCAATGGCTGATCTTGCTG 59.185 50.000 15.20 6.46 44.29 4.41
550 551 0.815734 GCAATGGCTGATCTTGCTGT 59.184 50.000 8.86 0.00 41.52 4.40
551 552 1.202268 GCAATGGCTGATCTTGCTGTC 60.202 52.381 8.86 0.00 41.52 3.51
552 553 2.366533 CAATGGCTGATCTTGCTGTCT 58.633 47.619 10.22 0.00 0.00 3.41
553 554 2.039818 ATGGCTGATCTTGCTGTCTG 57.960 50.000 10.22 0.00 0.00 3.51
554 555 0.978907 TGGCTGATCTTGCTGTCTGA 59.021 50.000 10.22 0.00 0.00 3.27
555 556 1.558294 TGGCTGATCTTGCTGTCTGAT 59.442 47.619 10.22 0.00 0.00 2.90
556 557 2.767960 TGGCTGATCTTGCTGTCTGATA 59.232 45.455 10.22 0.00 0.00 2.15
557 558 3.198417 TGGCTGATCTTGCTGTCTGATAA 59.802 43.478 10.22 0.00 0.00 1.75
558 559 4.194640 GGCTGATCTTGCTGTCTGATAAA 58.805 43.478 10.22 0.00 0.00 1.40
559 560 4.272991 GGCTGATCTTGCTGTCTGATAAAG 59.727 45.833 10.22 0.00 0.00 1.85
560 561 5.114780 GCTGATCTTGCTGTCTGATAAAGA 58.885 41.667 0.00 0.00 0.00 2.52
561 562 5.234757 GCTGATCTTGCTGTCTGATAAAGAG 59.765 44.000 0.00 0.00 34.84 2.85
562 563 6.291648 TGATCTTGCTGTCTGATAAAGAGT 57.708 37.500 0.00 0.00 34.84 3.24
563 564 6.336566 TGATCTTGCTGTCTGATAAAGAGTC 58.663 40.000 0.00 0.00 34.84 3.36
564 565 5.728637 TCTTGCTGTCTGATAAAGAGTCA 57.271 39.130 0.00 0.00 34.84 3.41
565 566 5.718146 TCTTGCTGTCTGATAAAGAGTCAG 58.282 41.667 0.00 0.00 43.46 3.51
566 567 4.462508 TGCTGTCTGATAAAGAGTCAGG 57.537 45.455 3.58 0.00 42.58 3.86
567 568 3.834813 TGCTGTCTGATAAAGAGTCAGGT 59.165 43.478 3.58 0.00 42.58 4.00
568 569 4.284490 TGCTGTCTGATAAAGAGTCAGGTT 59.716 41.667 3.58 0.00 42.58 3.50
569 570 5.221722 TGCTGTCTGATAAAGAGTCAGGTTT 60.222 40.000 3.58 0.00 42.58 3.27
570 571 5.121454 GCTGTCTGATAAAGAGTCAGGTTTG 59.879 44.000 3.58 0.00 42.58 2.93
571 572 6.419484 TGTCTGATAAAGAGTCAGGTTTGA 57.581 37.500 3.58 0.00 42.58 2.69
585 586 5.680619 TCAGGTTTGACATACTGAAACTGT 58.319 37.500 2.62 0.00 37.06 3.55
586 587 6.119536 TCAGGTTTGACATACTGAAACTGTT 58.880 36.000 2.62 0.00 37.06 3.16
587 588 6.260050 TCAGGTTTGACATACTGAAACTGTTC 59.740 38.462 0.00 0.00 37.06 3.18
588 589 5.236478 AGGTTTGACATACTGAAACTGTTCG 59.764 40.000 0.00 0.00 36.46 3.95
589 590 5.440685 GTTTGACATACTGAAACTGTTCGG 58.559 41.667 0.00 0.00 44.53 4.30
598 599 4.203950 TGAAACTGTTCGGTTCAAATCG 57.796 40.909 0.00 0.00 36.46 3.34
599 600 3.872182 TGAAACTGTTCGGTTCAAATCGA 59.128 39.130 0.00 0.00 40.23 3.59
600 601 4.025229 TGAAACTGTTCGGTTCAAATCGAG 60.025 41.667 0.00 0.00 43.15 4.04
601 602 3.107642 ACTGTTCGGTTCAAATCGAGT 57.892 42.857 0.00 0.00 43.15 4.18
602 603 2.800544 ACTGTTCGGTTCAAATCGAGTG 59.199 45.455 0.00 0.00 43.15 3.51
603 604 3.057019 CTGTTCGGTTCAAATCGAGTGA 58.943 45.455 0.00 0.00 43.15 3.41
604 605 2.798283 TGTTCGGTTCAAATCGAGTGAC 59.202 45.455 1.22 0.00 43.15 3.67
605 606 1.693467 TCGGTTCAAATCGAGTGACG 58.307 50.000 1.22 3.93 36.48 4.35
695 699 6.122964 ACTTTTTCTCAGAAAGCTACCAGTT 58.877 36.000 0.00 0.00 37.57 3.16
718 722 1.472990 CGGTCGGCTGTTTCAAAAAC 58.527 50.000 0.00 0.00 0.00 2.43
748 752 0.038526 CGGTGACTAGCGGTTGAACT 60.039 55.000 2.41 0.00 43.63 3.01
763 767 0.234884 GAACTGTTTTCCTGACCGCG 59.765 55.000 0.00 0.00 0.00 6.46
904 951 0.464735 GCTCGCTCACTCTCTCCCTA 60.465 60.000 0.00 0.00 0.00 3.53
955 1029 4.914420 CAGTAGGAGCTCGCCGCG 62.914 72.222 6.39 6.39 45.59 6.46
1020 1094 1.005394 GCCTTCCTGGAACGACGAA 60.005 57.895 4.68 0.00 38.35 3.85
1033 1107 0.452287 CGACGAAGAAACGAGCTCGA 60.452 55.000 40.58 0.00 43.02 4.04
1103 1182 4.668138 TTTCTTTGCCACCTAGGGTTAT 57.332 40.909 14.81 0.00 38.09 1.89
1235 1363 3.447586 TCATCTCTGTACAGTGTTAGGGC 59.552 47.826 21.99 0.00 0.00 5.19
1253 1381 1.700955 GCTCATGCTGATTTGGGGAT 58.299 50.000 0.00 0.00 36.03 3.85
1254 1382 2.037144 GCTCATGCTGATTTGGGGATT 58.963 47.619 0.00 0.00 36.03 3.01
1399 1541 0.879765 CTTGAGCTTGCTGAACCCAG 59.120 55.000 0.00 0.00 43.22 4.45
1531 1699 3.011818 CCTCACATGATGCAGCAGTTTA 58.988 45.455 11.66 0.00 0.00 2.01
2109 2393 1.561542 AGAACACCAGGAAGGCTATGG 59.438 52.381 10.78 10.78 43.14 2.74
2200 2484 2.026641 GCTGAAAGATGGCTATGGCAA 58.973 47.619 2.58 0.00 42.43 4.52
2313 2599 3.116096 AGGATGTGGCCTAACAGTCTA 57.884 47.619 3.32 0.00 36.22 2.59
2344 2635 2.090719 TGGGTGTACATTTTGGGGGAAA 60.091 45.455 0.00 0.00 0.00 3.13
2718 3040 1.231641 CACCCCCACACTTTCCCAA 59.768 57.895 0.00 0.00 0.00 4.12
2774 3104 2.707791 GAGATGGATCCTGACATGGGAA 59.292 50.000 14.23 0.00 36.37 3.97
2812 3143 0.910088 GGGAGGCTGTGGAGGTTAGT 60.910 60.000 0.00 0.00 0.00 2.24
2846 3186 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2847 3187 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2910 3250 0.955919 CAAGAGGAGTTCAACCGCCC 60.956 60.000 0.00 0.00 0.00 6.13
2969 3309 3.391296 AGAACTGGAGCTGGTTTTCACTA 59.609 43.478 0.00 0.00 0.00 2.74
3202 3563 5.242795 ACTAGTGTTTGATGCTACCCTTT 57.757 39.130 0.00 0.00 0.00 3.11
3210 3571 6.211184 TGTTTGATGCTACCCTTTTGAATGAT 59.789 34.615 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.969260 TCTGAAAGAACATACATATTGCATCT 57.031 30.769 0.00 0.00 42.31 2.90
78 79 3.648339 GCACTTGGCATCAGAGAAAAA 57.352 42.857 0.00 0.00 43.97 1.94
90 91 4.701956 ATACACAAATACTGCACTTGGC 57.298 40.909 0.00 0.00 45.13 4.52
91 92 5.645929 TGGTATACACAAATACTGCACTTGG 59.354 40.000 5.01 0.00 33.62 3.61
92 93 6.371548 ACTGGTATACACAAATACTGCACTTG 59.628 38.462 5.01 0.00 33.62 3.16
93 94 6.472887 ACTGGTATACACAAATACTGCACTT 58.527 36.000 5.01 0.00 33.62 3.16
94 95 6.049955 ACTGGTATACACAAATACTGCACT 57.950 37.500 5.01 0.00 33.62 4.40
95 96 7.837202 TTACTGGTATACACAAATACTGCAC 57.163 36.000 5.01 0.00 33.62 4.57
96 97 8.850007 TTTTACTGGTATACACAAATACTGCA 57.150 30.769 5.01 0.00 33.62 4.41
104 105 9.968870 GTTTTCCATTTTTACTGGTATACACAA 57.031 29.630 5.01 0.00 35.19 3.33
105 106 8.291032 CGTTTTCCATTTTTACTGGTATACACA 58.709 33.333 5.01 0.00 35.19 3.72
106 107 8.291740 ACGTTTTCCATTTTTACTGGTATACAC 58.708 33.333 5.01 0.00 35.19 2.90
107 108 8.291032 CACGTTTTCCATTTTTACTGGTATACA 58.709 33.333 5.01 0.00 35.19 2.29
108 109 8.291740 ACACGTTTTCCATTTTTACTGGTATAC 58.708 33.333 0.00 0.00 35.19 1.47
109 110 8.291032 CACACGTTTTCCATTTTTACTGGTATA 58.709 33.333 0.00 0.00 35.19 1.47
110 111 7.013464 TCACACGTTTTCCATTTTTACTGGTAT 59.987 33.333 0.00 0.00 35.19 2.73
111 112 6.318144 TCACACGTTTTCCATTTTTACTGGTA 59.682 34.615 0.00 0.00 35.19 3.25
112 113 5.125739 TCACACGTTTTCCATTTTTACTGGT 59.874 36.000 0.00 0.00 35.19 4.00
113 114 5.583495 TCACACGTTTTCCATTTTTACTGG 58.417 37.500 0.00 0.00 34.93 4.00
114 115 7.062371 TGTTTCACACGTTTTCCATTTTTACTG 59.938 33.333 0.00 0.00 0.00 2.74
115 116 7.091443 TGTTTCACACGTTTTCCATTTTTACT 58.909 30.769 0.00 0.00 0.00 2.24
116 117 7.279470 TGTTTCACACGTTTTCCATTTTTAC 57.721 32.000 0.00 0.00 0.00 2.01
117 118 7.759886 TGATGTTTCACACGTTTTCCATTTTTA 59.240 29.630 0.00 0.00 0.00 1.52
118 119 6.591834 TGATGTTTCACACGTTTTCCATTTTT 59.408 30.769 0.00 0.00 0.00 1.94
119 120 6.102663 TGATGTTTCACACGTTTTCCATTTT 58.897 32.000 0.00 0.00 0.00 1.82
120 121 5.655488 TGATGTTTCACACGTTTTCCATTT 58.345 33.333 0.00 0.00 0.00 2.32
121 122 5.255710 TGATGTTTCACACGTTTTCCATT 57.744 34.783 0.00 0.00 0.00 3.16
122 123 4.909696 TGATGTTTCACACGTTTTCCAT 57.090 36.364 0.00 0.00 0.00 3.41
131 132 7.544217 AAAGTAACTTTTGGTGATGTTTCACAC 59.456 33.333 8.25 0.00 41.24 3.82
132 133 7.607250 AAAGTAACTTTTGGTGATGTTTCACA 58.393 30.769 8.25 0.00 41.24 3.58
133 134 8.474006 AAAAGTAACTTTTGGTGATGTTTCAC 57.526 30.769 0.00 0.00 41.38 3.18
147 148 9.430623 ACAACATTTTACAGCAAAAGTAACTTT 57.569 25.926 0.00 0.00 39.44 2.66
148 149 8.996024 ACAACATTTTACAGCAAAAGTAACTT 57.004 26.923 0.00 0.00 39.44 2.66
151 152 9.856488 TGTTACAACATTTTACAGCAAAAGTAA 57.144 25.926 0.00 0.00 39.44 2.24
152 153 9.856488 TTGTTACAACATTTTACAGCAAAAGTA 57.144 25.926 0.00 0.00 39.44 2.24
153 154 8.764524 TTGTTACAACATTTTACAGCAAAAGT 57.235 26.923 0.00 0.00 39.44 2.66
156 157 9.209175 ACTTTTGTTACAACATTTTACAGCAAA 57.791 25.926 0.00 0.00 38.95 3.68
157 158 8.764524 ACTTTTGTTACAACATTTTACAGCAA 57.235 26.923 0.00 0.00 38.95 3.91
158 159 8.029522 TGACTTTTGTTACAACATTTTACAGCA 58.970 29.630 0.00 0.00 38.95 4.41
159 160 8.401046 TGACTTTTGTTACAACATTTTACAGC 57.599 30.769 0.00 0.00 38.95 4.40
165 166 8.550376 GCATCAATGACTTTTGTTACAACATTT 58.450 29.630 8.34 0.00 38.95 2.32
166 167 7.927629 AGCATCAATGACTTTTGTTACAACATT 59.072 29.630 0.00 1.71 38.95 2.71
167 168 7.383029 CAGCATCAATGACTTTTGTTACAACAT 59.617 33.333 0.00 0.00 38.95 2.71
168 169 6.696583 CAGCATCAATGACTTTTGTTACAACA 59.303 34.615 0.00 0.00 37.08 3.33
169 170 6.917477 TCAGCATCAATGACTTTTGTTACAAC 59.083 34.615 0.00 0.00 0.00 3.32
170 171 7.013178 TCTCAGCATCAATGACTTTTGTTACAA 59.987 33.333 0.00 0.00 0.00 2.41
171 172 6.486320 TCTCAGCATCAATGACTTTTGTTACA 59.514 34.615 0.00 0.00 0.00 2.41
172 173 6.902341 TCTCAGCATCAATGACTTTTGTTAC 58.098 36.000 0.00 0.00 0.00 2.50
173 174 7.509141 TTCTCAGCATCAATGACTTTTGTTA 57.491 32.000 0.00 0.00 0.00 2.41
174 175 6.395426 TTCTCAGCATCAATGACTTTTGTT 57.605 33.333 0.00 0.00 0.00 2.83
175 176 6.015688 ACATTCTCAGCATCAATGACTTTTGT 60.016 34.615 0.00 0.00 32.73 2.83
176 177 6.387465 ACATTCTCAGCATCAATGACTTTTG 58.613 36.000 0.00 0.00 32.73 2.44
177 178 6.585695 ACATTCTCAGCATCAATGACTTTT 57.414 33.333 0.00 0.00 32.73 2.27
178 179 6.208007 TCAACATTCTCAGCATCAATGACTTT 59.792 34.615 0.00 0.00 32.73 2.66
179 180 5.708697 TCAACATTCTCAGCATCAATGACTT 59.291 36.000 0.00 0.00 32.73 3.01
180 181 5.250982 TCAACATTCTCAGCATCAATGACT 58.749 37.500 0.00 0.00 32.73 3.41
181 182 5.353400 TCTCAACATTCTCAGCATCAATGAC 59.647 40.000 0.00 0.00 32.73 3.06
182 183 5.493809 TCTCAACATTCTCAGCATCAATGA 58.506 37.500 0.00 0.00 32.73 2.57
183 184 5.813080 TCTCAACATTCTCAGCATCAATG 57.187 39.130 0.00 0.00 34.29 2.82
184 185 6.829229 TTTCTCAACATTCTCAGCATCAAT 57.171 33.333 0.00 0.00 0.00 2.57
185 186 6.638096 TTTTCTCAACATTCTCAGCATCAA 57.362 33.333 0.00 0.00 0.00 2.57
186 187 5.335426 GCTTTTCTCAACATTCTCAGCATCA 60.335 40.000 0.00 0.00 0.00 3.07
187 188 5.094134 GCTTTTCTCAACATTCTCAGCATC 58.906 41.667 0.00 0.00 0.00 3.91
188 189 4.765856 AGCTTTTCTCAACATTCTCAGCAT 59.234 37.500 0.00 0.00 0.00 3.79
189 190 4.139786 AGCTTTTCTCAACATTCTCAGCA 58.860 39.130 0.00 0.00 0.00 4.41
190 191 4.762956 AGCTTTTCTCAACATTCTCAGC 57.237 40.909 0.00 0.00 0.00 4.26
191 192 8.715191 AGTATAGCTTTTCTCAACATTCTCAG 57.285 34.615 0.00 0.00 0.00 3.35
192 193 7.489435 CGAGTATAGCTTTTCTCAACATTCTCA 59.511 37.037 10.51 0.00 0.00 3.27
193 194 7.489757 ACGAGTATAGCTTTTCTCAACATTCTC 59.510 37.037 10.51 0.00 0.00 2.87
194 195 7.324178 ACGAGTATAGCTTTTCTCAACATTCT 58.676 34.615 10.51 0.00 0.00 2.40
195 196 7.275779 TGACGAGTATAGCTTTTCTCAACATTC 59.724 37.037 10.51 1.30 0.00 2.67
196 197 7.097192 TGACGAGTATAGCTTTTCTCAACATT 58.903 34.615 10.51 0.00 0.00 2.71
197 198 6.631016 TGACGAGTATAGCTTTTCTCAACAT 58.369 36.000 10.51 0.00 0.00 2.71
198 199 6.020971 TGACGAGTATAGCTTTTCTCAACA 57.979 37.500 10.51 7.04 0.00 3.33
199 200 6.946229 TTGACGAGTATAGCTTTTCTCAAC 57.054 37.500 10.51 5.06 0.00 3.18
200 201 6.472486 CGATTGACGAGTATAGCTTTTCTCAA 59.528 38.462 10.51 7.31 45.77 3.02
201 202 5.971792 CGATTGACGAGTATAGCTTTTCTCA 59.028 40.000 10.51 0.00 45.77 3.27
202 203 6.200100 TCGATTGACGAGTATAGCTTTTCTC 58.800 40.000 0.00 0.00 46.45 2.87
203 204 6.132791 TCGATTGACGAGTATAGCTTTTCT 57.867 37.500 0.00 0.00 46.45 2.52
216 217 8.792751 ATGTTCAACATGCTTATCGATTGACGA 61.793 37.037 1.71 0.00 45.50 4.20
217 218 4.777140 TCAACATGCTTATCGATTGACG 57.223 40.909 1.71 0.00 44.09 4.35
218 219 5.868257 TGTTCAACATGCTTATCGATTGAC 58.132 37.500 1.71 0.00 0.00 3.18
219 220 6.682423 ATGTTCAACATGCTTATCGATTGA 57.318 33.333 1.71 0.00 37.45 2.57
220 221 6.968335 TGAATGTTCAACATGCTTATCGATTG 59.032 34.615 10.05 0.00 37.97 2.67
221 222 7.087409 TGAATGTTCAACATGCTTATCGATT 57.913 32.000 10.05 0.00 37.97 3.34
222 223 6.682423 TGAATGTTCAACATGCTTATCGAT 57.318 33.333 10.05 2.16 37.97 3.59
223 224 5.447683 GCTGAATGTTCAACATGCTTATCGA 60.448 40.000 10.05 0.00 37.97 3.59
224 225 4.731961 GCTGAATGTTCAACATGCTTATCG 59.268 41.667 10.05 0.00 37.97 2.92
225 226 5.742453 CAGCTGAATGTTCAACATGCTTATC 59.258 40.000 8.42 1.39 37.97 1.75
226 227 5.393787 CCAGCTGAATGTTCAACATGCTTAT 60.394 40.000 17.39 0.00 37.97 1.73
227 228 4.082625 CCAGCTGAATGTTCAACATGCTTA 60.083 41.667 17.39 0.00 37.97 3.09
228 229 3.305813 CCAGCTGAATGTTCAACATGCTT 60.306 43.478 17.39 0.00 37.97 3.91
229 230 2.230508 CCAGCTGAATGTTCAACATGCT 59.769 45.455 17.39 8.84 37.97 3.79
230 231 2.602878 CCAGCTGAATGTTCAACATGC 58.397 47.619 17.39 1.90 37.97 4.06
231 232 2.230508 AGCCAGCTGAATGTTCAACATG 59.769 45.455 17.39 0.00 37.97 3.21
232 233 2.522185 AGCCAGCTGAATGTTCAACAT 58.478 42.857 17.39 0.00 41.31 2.71
233 234 1.985473 AGCCAGCTGAATGTTCAACA 58.015 45.000 17.39 0.00 36.64 3.33
234 235 2.159462 GCTAGCCAGCTGAATGTTCAAC 60.159 50.000 17.39 0.00 44.93 3.18
235 236 2.086869 GCTAGCCAGCTGAATGTTCAA 58.913 47.619 17.39 0.00 44.93 2.69
236 237 1.742761 GCTAGCCAGCTGAATGTTCA 58.257 50.000 17.39 0.00 44.93 3.18
250 251 0.251634 AAGGACCTTGAGCAGCTAGC 59.748 55.000 6.62 6.62 46.19 3.42
251 252 2.777832 AAAGGACCTTGAGCAGCTAG 57.222 50.000 7.72 0.00 0.00 3.42
252 253 3.508845 AAAAAGGACCTTGAGCAGCTA 57.491 42.857 7.72 0.00 0.00 3.32
253 254 2.371658 AAAAAGGACCTTGAGCAGCT 57.628 45.000 7.72 0.00 0.00 4.24
286 287 9.561069 ACTACAGAAAACACAATAAACAGAGAT 57.439 29.630 0.00 0.00 0.00 2.75
287 288 8.958119 ACTACAGAAAACACAATAAACAGAGA 57.042 30.769 0.00 0.00 0.00 3.10
289 290 9.997482 GAAACTACAGAAAACACAATAAACAGA 57.003 29.630 0.00 0.00 0.00 3.41
290 291 9.781834 TGAAACTACAGAAAACACAATAAACAG 57.218 29.630 0.00 0.00 0.00 3.16
291 292 9.562583 GTGAAACTACAGAAAACACAATAAACA 57.437 29.630 0.00 0.00 0.00 2.83
292 293 9.016623 GGTGAAACTACAGAAAACACAATAAAC 57.983 33.333 0.00 0.00 36.74 2.01
293 294 8.192110 GGGTGAAACTACAGAAAACACAATAAA 58.808 33.333 0.00 0.00 36.74 1.40
294 295 7.201839 GGGGTGAAACTACAGAAAACACAATAA 60.202 37.037 0.00 0.00 36.74 1.40
295 296 6.263617 GGGGTGAAACTACAGAAAACACAATA 59.736 38.462 0.00 0.00 36.74 1.90
296 297 5.068591 GGGGTGAAACTACAGAAAACACAAT 59.931 40.000 0.00 0.00 36.74 2.71
297 298 4.399934 GGGGTGAAACTACAGAAAACACAA 59.600 41.667 0.00 0.00 36.74 3.33
298 299 3.949113 GGGGTGAAACTACAGAAAACACA 59.051 43.478 0.00 0.00 36.74 3.72
299 300 4.036380 CAGGGGTGAAACTACAGAAAACAC 59.964 45.833 0.00 0.00 36.74 3.32
300 301 4.204012 CAGGGGTGAAACTACAGAAAACA 58.796 43.478 0.00 0.00 36.74 2.83
301 302 3.568430 CCAGGGGTGAAACTACAGAAAAC 59.432 47.826 0.00 0.00 36.74 2.43
302 303 3.435890 CCCAGGGGTGAAACTACAGAAAA 60.436 47.826 0.00 0.00 36.74 2.29
303 304 2.107552 CCCAGGGGTGAAACTACAGAAA 59.892 50.000 0.00 0.00 36.74 2.52
304 305 1.702957 CCCAGGGGTGAAACTACAGAA 59.297 52.381 0.00 0.00 36.74 3.02
305 306 1.358152 CCCAGGGGTGAAACTACAGA 58.642 55.000 0.00 0.00 36.74 3.41
306 307 0.322546 GCCCAGGGGTGAAACTACAG 60.323 60.000 7.91 0.00 36.74 2.74
307 308 1.765074 GCCCAGGGGTGAAACTACA 59.235 57.895 7.91 0.00 36.74 2.74
308 309 1.001269 GGCCCAGGGGTGAAACTAC 60.001 63.158 7.91 0.00 36.74 2.73
309 310 0.119561 TAGGCCCAGGGGTGAAACTA 59.880 55.000 7.91 0.18 36.74 2.24
310 311 0.552615 ATAGGCCCAGGGGTGAAACT 60.553 55.000 7.91 1.09 36.74 2.66
311 312 0.395724 CATAGGCCCAGGGGTGAAAC 60.396 60.000 7.91 0.00 37.65 2.78
312 313 2.006748 CATAGGCCCAGGGGTGAAA 58.993 57.895 7.91 0.00 37.65 2.69
313 314 2.689691 GCATAGGCCCAGGGGTGAA 61.690 63.158 7.91 0.00 37.65 3.18
314 315 3.096495 GCATAGGCCCAGGGGTGA 61.096 66.667 7.91 0.00 37.65 4.02
315 316 3.419580 TGCATAGGCCCAGGGGTG 61.420 66.667 7.91 0.00 40.13 4.61
316 317 3.099170 CTGCATAGGCCCAGGGGT 61.099 66.667 7.91 0.00 40.13 4.95
317 318 4.593125 GCTGCATAGGCCCAGGGG 62.593 72.222 7.91 3.48 40.13 4.79
318 319 4.593125 GGCTGCATAGGCCCAGGG 62.593 72.222 0.00 0.00 43.49 4.45
325 326 0.254178 AGGTTGTCTGGCTGCATAGG 59.746 55.000 0.50 0.00 0.00 2.57
326 327 1.065926 TCAGGTTGTCTGGCTGCATAG 60.066 52.381 0.50 0.00 43.53 2.23
327 328 0.983467 TCAGGTTGTCTGGCTGCATA 59.017 50.000 0.50 0.00 43.53 3.14
328 329 0.330604 ATCAGGTTGTCTGGCTGCAT 59.669 50.000 0.50 0.00 43.53 3.96
329 330 0.607217 CATCAGGTTGTCTGGCTGCA 60.607 55.000 0.50 0.00 43.53 4.41
330 331 0.321919 TCATCAGGTTGTCTGGCTGC 60.322 55.000 0.00 0.00 43.53 5.25
331 332 1.002888 ACTCATCAGGTTGTCTGGCTG 59.997 52.381 0.00 0.00 43.53 4.85
332 333 1.002888 CACTCATCAGGTTGTCTGGCT 59.997 52.381 0.00 0.00 43.53 4.75
333 334 1.002430 TCACTCATCAGGTTGTCTGGC 59.998 52.381 0.00 0.00 43.53 4.85
334 335 3.407424 TTCACTCATCAGGTTGTCTGG 57.593 47.619 0.00 0.00 43.53 3.86
335 336 4.818546 AGTTTTCACTCATCAGGTTGTCTG 59.181 41.667 0.00 0.00 44.68 3.51
336 337 4.818546 CAGTTTTCACTCATCAGGTTGTCT 59.181 41.667 0.00 0.00 0.00 3.41
337 338 4.023707 CCAGTTTTCACTCATCAGGTTGTC 60.024 45.833 0.00 0.00 0.00 3.18
338 339 3.885297 CCAGTTTTCACTCATCAGGTTGT 59.115 43.478 0.00 0.00 0.00 3.32
339 340 3.885297 ACCAGTTTTCACTCATCAGGTTG 59.115 43.478 0.00 0.00 0.00 3.77
340 341 3.885297 CACCAGTTTTCACTCATCAGGTT 59.115 43.478 0.00 0.00 0.00 3.50
341 342 3.480470 CACCAGTTTTCACTCATCAGGT 58.520 45.455 0.00 0.00 0.00 4.00
342 343 2.816087 CCACCAGTTTTCACTCATCAGG 59.184 50.000 0.00 0.00 0.00 3.86
343 344 3.743521 TCCACCAGTTTTCACTCATCAG 58.256 45.455 0.00 0.00 0.00 2.90
344 345 3.855255 TCCACCAGTTTTCACTCATCA 57.145 42.857 0.00 0.00 0.00 3.07
345 346 3.253432 GGTTCCACCAGTTTTCACTCATC 59.747 47.826 0.00 0.00 38.42 2.92
346 347 3.222603 GGTTCCACCAGTTTTCACTCAT 58.777 45.455 0.00 0.00 38.42 2.90
347 348 2.025793 TGGTTCCACCAGTTTTCACTCA 60.026 45.455 0.00 0.00 44.79 3.41
348 349 2.650322 TGGTTCCACCAGTTTTCACTC 58.350 47.619 0.00 0.00 44.79 3.51
349 350 2.818751 TGGTTCCACCAGTTTTCACT 57.181 45.000 0.00 0.00 44.79 3.41
355 356 9.879432 AAGTAAAACTTCCTGGTTCCACCAGTT 62.879 40.741 19.38 9.88 46.63 3.16
356 357 8.510791 AAGTAAAACTTCCTGGTTCCACCAGT 62.511 42.308 19.38 4.15 46.63 4.00
357 358 6.155666 AAGTAAAACTTCCTGGTTCCACCAG 61.156 44.000 15.04 15.04 46.64 4.00
358 359 4.325501 AAGTAAAACTTCCTGGTTCCACCA 60.326 41.667 0.00 0.00 39.09 4.17
359 360 3.828921 AGTAAAACTTCCTGGTTCCACC 58.171 45.455 0.00 0.00 39.22 4.61
360 361 4.037565 CCAAGTAAAACTTCCTGGTTCCAC 59.962 45.833 0.00 0.00 36.03 4.02
361 362 4.211920 CCAAGTAAAACTTCCTGGTTCCA 58.788 43.478 0.00 0.00 36.03 3.53
362 363 4.212716 ACCAAGTAAAACTTCCTGGTTCC 58.787 43.478 0.00 0.00 34.18 3.62
363 364 5.847111 AACCAAGTAAAACTTCCTGGTTC 57.153 39.130 8.25 0.00 40.80 3.62
364 365 5.359860 CAGAACCAAGTAAAACTTCCTGGTT 59.640 40.000 12.29 12.29 44.88 3.67
365 366 4.887655 CAGAACCAAGTAAAACTTCCTGGT 59.112 41.667 0.00 0.00 38.20 4.00
366 367 5.130350 TCAGAACCAAGTAAAACTTCCTGG 58.870 41.667 0.00 0.00 36.03 4.45
367 368 6.486657 TGATCAGAACCAAGTAAAACTTCCTG 59.513 38.462 0.00 0.00 36.03 3.86
368 369 6.601332 TGATCAGAACCAAGTAAAACTTCCT 58.399 36.000 0.00 0.00 36.03 3.36
369 370 6.877611 TGATCAGAACCAAGTAAAACTTCC 57.122 37.500 0.00 0.00 36.03 3.46
370 371 8.567948 TGAATGATCAGAACCAAGTAAAACTTC 58.432 33.333 0.09 0.00 36.03 3.01
371 372 8.463930 TGAATGATCAGAACCAAGTAAAACTT 57.536 30.769 0.09 0.00 39.39 2.66
372 373 8.641498 ATGAATGATCAGAACCAAGTAAAACT 57.359 30.769 0.09 0.00 39.39 2.66
384 385 6.359804 CCTCCTTGGTTATGAATGATCAGAA 58.640 40.000 0.09 0.00 39.39 3.02
385 386 5.163163 CCCTCCTTGGTTATGAATGATCAGA 60.163 44.000 0.09 0.00 39.39 3.27
386 387 5.068636 CCCTCCTTGGTTATGAATGATCAG 58.931 45.833 0.09 0.00 39.39 2.90
387 388 4.478317 ACCCTCCTTGGTTATGAATGATCA 59.522 41.667 0.00 0.00 35.95 2.92
388 389 5.053978 ACCCTCCTTGGTTATGAATGATC 57.946 43.478 0.00 0.00 33.91 2.92
389 390 5.472301 AACCCTCCTTGGTTATGAATGAT 57.528 39.130 0.00 0.00 46.70 2.45
390 391 4.946160 AACCCTCCTTGGTTATGAATGA 57.054 40.909 0.00 0.00 46.70 2.57
399 400 1.454539 CGGACAAACCCTCCTTGGT 59.545 57.895 0.00 0.00 41.55 3.67
400 401 1.303317 CCGGACAAACCCTCCTTGG 60.303 63.158 0.00 0.00 34.64 3.61
401 402 1.971695 GCCGGACAAACCCTCCTTG 60.972 63.158 5.05 0.00 34.64 3.61
402 403 2.434774 GCCGGACAAACCCTCCTT 59.565 61.111 5.05 0.00 34.64 3.36
403 404 2.852075 TGCCGGACAAACCCTCCT 60.852 61.111 5.05 0.00 34.64 3.69
404 405 2.671963 GTGCCGGACAAACCCTCC 60.672 66.667 5.05 0.00 34.64 4.30
405 406 1.303317 ATGTGCCGGACAAACCCTC 60.303 57.895 5.05 0.00 38.36 4.30
406 407 1.603455 CATGTGCCGGACAAACCCT 60.603 57.895 5.05 0.00 38.36 4.34
407 408 1.175983 TTCATGTGCCGGACAAACCC 61.176 55.000 5.05 0.00 38.36 4.11
408 409 0.671251 TTTCATGTGCCGGACAAACC 59.329 50.000 5.05 0.00 38.36 3.27
409 410 1.066303 TGTTTCATGTGCCGGACAAAC 59.934 47.619 5.05 9.06 38.36 2.93
410 411 1.393603 TGTTTCATGTGCCGGACAAA 58.606 45.000 5.05 0.00 38.36 2.83
411 412 1.393603 TTGTTTCATGTGCCGGACAA 58.606 45.000 5.05 0.28 38.36 3.18
412 413 1.393603 TTTGTTTCATGTGCCGGACA 58.606 45.000 5.05 7.51 39.53 4.02
413 414 2.500509 TTTTGTTTCATGTGCCGGAC 57.499 45.000 5.05 0.46 0.00 4.79
414 415 2.223923 CCTTTTTGTTTCATGTGCCGGA 60.224 45.455 5.05 0.00 0.00 5.14
415 416 2.134346 CCTTTTTGTTTCATGTGCCGG 58.866 47.619 0.00 0.00 0.00 6.13
416 417 3.090952 TCCTTTTTGTTTCATGTGCCG 57.909 42.857 0.00 0.00 0.00 5.69
417 418 4.211794 CACATCCTTTTTGTTTCATGTGCC 59.788 41.667 0.00 0.00 35.94 5.01
418 419 5.333046 CACATCCTTTTTGTTTCATGTGC 57.667 39.130 0.00 0.00 35.94 4.57
419 420 4.809958 TGCACATCCTTTTTGTTTCATGTG 59.190 37.500 5.65 5.65 42.60 3.21
420 421 5.021033 TGCACATCCTTTTTGTTTCATGT 57.979 34.783 0.00 0.00 0.00 3.21
421 422 7.655236 TTATGCACATCCTTTTTGTTTCATG 57.345 32.000 0.00 0.00 0.00 3.07
422 423 7.550196 GGATTATGCACATCCTTTTTGTTTCAT 59.450 33.333 16.54 0.00 37.77 2.57
423 424 6.873076 GGATTATGCACATCCTTTTTGTTTCA 59.127 34.615 16.54 0.00 37.77 2.69
424 425 7.294676 GGATTATGCACATCCTTTTTGTTTC 57.705 36.000 16.54 0.00 37.77 2.78
440 441 2.276732 TTAGCCAGGCAGGATTATGC 57.723 50.000 15.80 0.00 45.74 3.14
441 442 5.302568 TGAAAATTAGCCAGGCAGGATTATG 59.697 40.000 15.80 0.00 41.22 1.90
442 443 5.457686 TGAAAATTAGCCAGGCAGGATTAT 58.542 37.500 15.80 0.00 41.22 1.28
443 444 4.865905 TGAAAATTAGCCAGGCAGGATTA 58.134 39.130 15.80 0.00 41.22 1.75
444 445 3.711863 TGAAAATTAGCCAGGCAGGATT 58.288 40.909 15.80 7.65 41.22 3.01
445 446 3.386932 TGAAAATTAGCCAGGCAGGAT 57.613 42.857 15.80 0.00 41.22 3.24
446 447 2.897271 TGAAAATTAGCCAGGCAGGA 57.103 45.000 15.80 0.00 41.22 3.86
447 448 3.294214 AGATGAAAATTAGCCAGGCAGG 58.706 45.455 15.80 0.00 41.84 4.85
448 449 4.996788 AAGATGAAAATTAGCCAGGCAG 57.003 40.909 15.80 0.00 0.00 4.85
449 450 5.360714 CCTTAAGATGAAAATTAGCCAGGCA 59.639 40.000 15.80 0.00 0.00 4.75
450 451 5.360999 ACCTTAAGATGAAAATTAGCCAGGC 59.639 40.000 1.84 1.84 0.00 4.85
451 452 8.519799 TTACCTTAAGATGAAAATTAGCCAGG 57.480 34.615 3.36 0.00 0.00 4.45
463 464 9.754382 GTCATAACCGTTATTACCTTAAGATGA 57.246 33.333 3.36 0.00 0.00 2.92
464 465 9.760077 AGTCATAACCGTTATTACCTTAAGATG 57.240 33.333 3.36 0.00 0.00 2.90
465 466 9.760077 CAGTCATAACCGTTATTACCTTAAGAT 57.240 33.333 3.36 0.00 0.00 2.40
466 467 8.970020 TCAGTCATAACCGTTATTACCTTAAGA 58.030 33.333 3.36 0.00 0.00 2.10
467 468 9.760077 ATCAGTCATAACCGTTATTACCTTAAG 57.240 33.333 10.64 0.00 0.00 1.85
469 470 9.754382 GAATCAGTCATAACCGTTATTACCTTA 57.246 33.333 10.64 0.55 0.00 2.69
470 471 8.483758 AGAATCAGTCATAACCGTTATTACCTT 58.516 33.333 10.64 4.58 0.00 3.50
471 472 8.019656 AGAATCAGTCATAACCGTTATTACCT 57.980 34.615 10.64 1.72 0.00 3.08
472 473 8.658499 AAGAATCAGTCATAACCGTTATTACC 57.342 34.615 10.64 0.00 0.00 2.85
473 474 9.530633 AGAAGAATCAGTCATAACCGTTATTAC 57.469 33.333 7.30 7.30 0.00 1.89
474 475 9.745880 GAGAAGAATCAGTCATAACCGTTATTA 57.254 33.333 0.73 0.00 0.00 0.98
475 476 8.478877 AGAGAAGAATCAGTCATAACCGTTATT 58.521 33.333 0.73 0.00 0.00 1.40
476 477 7.923344 CAGAGAAGAATCAGTCATAACCGTTAT 59.077 37.037 0.00 0.00 0.00 1.89
477 478 7.122204 TCAGAGAAGAATCAGTCATAACCGTTA 59.878 37.037 0.00 0.00 0.00 3.18
478 479 6.071334 TCAGAGAAGAATCAGTCATAACCGTT 60.071 38.462 0.00 0.00 0.00 4.44
479 480 5.419155 TCAGAGAAGAATCAGTCATAACCGT 59.581 40.000 0.00 0.00 0.00 4.83
480 481 5.895928 TCAGAGAAGAATCAGTCATAACCG 58.104 41.667 0.00 0.00 0.00 4.44
481 482 7.551585 TCTTCAGAGAAGAATCAGTCATAACC 58.448 38.462 6.97 0.00 0.00 2.85
482 483 8.994429 TTCTTCAGAGAAGAATCAGTCATAAC 57.006 34.615 15.94 0.00 36.99 1.89
483 484 9.650539 CTTTCTTCAGAGAAGAATCAGTCATAA 57.349 33.333 19.37 4.47 42.55 1.90
484 485 8.811017 ACTTTCTTCAGAGAAGAATCAGTCATA 58.189 33.333 19.37 5.04 42.55 2.15
485 486 7.678837 ACTTTCTTCAGAGAAGAATCAGTCAT 58.321 34.615 19.37 1.72 42.55 3.06
486 487 7.060383 ACTTTCTTCAGAGAAGAATCAGTCA 57.940 36.000 19.37 6.20 42.55 3.41
487 488 7.961325 AACTTTCTTCAGAGAAGAATCAGTC 57.039 36.000 19.37 0.00 42.55 3.51
488 489 7.228308 CCAAACTTTCTTCAGAGAAGAATCAGT 59.772 37.037 19.37 17.37 42.55 3.41
489 490 7.308469 CCCAAACTTTCTTCAGAGAAGAATCAG 60.308 40.741 19.37 16.87 42.55 2.90
490 491 6.488006 CCCAAACTTTCTTCAGAGAAGAATCA 59.512 38.462 19.37 7.97 42.55 2.57
491 492 6.488344 ACCCAAACTTTCTTCAGAGAAGAATC 59.512 38.462 19.37 0.00 42.55 2.52
492 493 6.368805 ACCCAAACTTTCTTCAGAGAAGAAT 58.631 36.000 19.37 6.45 42.55 2.40
493 494 5.755849 ACCCAAACTTTCTTCAGAGAAGAA 58.244 37.500 15.94 15.94 42.55 2.52
494 495 5.373812 ACCCAAACTTTCTTCAGAGAAGA 57.626 39.130 5.41 5.41 42.55 2.87
495 496 6.372937 GGATACCCAAACTTTCTTCAGAGAAG 59.627 42.308 0.39 0.39 42.55 2.85
496 497 6.238648 GGATACCCAAACTTTCTTCAGAGAA 58.761 40.000 0.00 0.00 40.07 2.87
497 498 5.805728 GGATACCCAAACTTTCTTCAGAGA 58.194 41.667 0.00 0.00 0.00 3.10
515 516 1.533625 TTGCACTGCACAAGGGATAC 58.466 50.000 2.26 0.00 38.71 2.24
516 517 2.093890 CATTGCACTGCACAAGGGATA 58.906 47.619 2.26 0.00 38.71 2.59
517 518 0.892755 CATTGCACTGCACAAGGGAT 59.107 50.000 2.26 0.00 38.71 3.85
518 519 2.343506 CATTGCACTGCACAAGGGA 58.656 52.632 2.26 0.00 38.71 4.20
519 520 1.290955 CCATTGCACTGCACAAGGG 59.709 57.895 2.26 5.03 41.94 3.95
520 521 1.373748 GCCATTGCACTGCACAAGG 60.374 57.895 2.26 7.17 38.71 3.61
521 522 0.666274 CAGCCATTGCACTGCACAAG 60.666 55.000 2.26 0.00 38.71 3.16
522 523 1.108132 TCAGCCATTGCACTGCACAA 61.108 50.000 2.26 0.00 38.71 3.33
523 524 0.896479 ATCAGCCATTGCACTGCACA 60.896 50.000 2.26 0.00 38.71 4.57
524 525 0.179145 GATCAGCCATTGCACTGCAC 60.179 55.000 2.26 0.00 38.71 4.57
525 526 0.323087 AGATCAGCCATTGCACTGCA 60.323 50.000 0.00 0.00 41.13 4.41
526 527 0.815734 AAGATCAGCCATTGCACTGC 59.184 50.000 0.00 0.00 41.13 4.40
527 528 1.469251 GCAAGATCAGCCATTGCACTG 60.469 52.381 10.75 0.00 46.64 3.66
528 529 0.815734 GCAAGATCAGCCATTGCACT 59.184 50.000 10.75 0.00 46.64 4.40
529 530 3.340727 GCAAGATCAGCCATTGCAC 57.659 52.632 10.75 0.00 46.64 4.57
532 533 2.097629 CAGACAGCAAGATCAGCCATTG 59.902 50.000 6.55 2.37 0.00 2.82
533 534 2.026542 TCAGACAGCAAGATCAGCCATT 60.027 45.455 6.55 0.00 0.00 3.16
534 535 1.558294 TCAGACAGCAAGATCAGCCAT 59.442 47.619 6.55 0.00 0.00 4.40
535 536 0.978907 TCAGACAGCAAGATCAGCCA 59.021 50.000 6.55 0.00 0.00 4.75
536 537 2.328819 ATCAGACAGCAAGATCAGCC 57.671 50.000 6.55 0.00 0.00 4.85
537 538 5.114780 TCTTTATCAGACAGCAAGATCAGC 58.885 41.667 0.00 0.00 0.00 4.26
538 539 6.339730 ACTCTTTATCAGACAGCAAGATCAG 58.660 40.000 0.00 0.00 0.00 2.90
539 540 6.071165 TGACTCTTTATCAGACAGCAAGATCA 60.071 38.462 0.00 0.00 0.00 2.92
540 541 6.336566 TGACTCTTTATCAGACAGCAAGATC 58.663 40.000 0.00 0.00 0.00 2.75
541 542 6.291648 TGACTCTTTATCAGACAGCAAGAT 57.708 37.500 0.00 0.00 0.00 2.40
542 543 5.337089 CCTGACTCTTTATCAGACAGCAAGA 60.337 44.000 3.58 0.00 45.46 3.02
543 544 4.869297 CCTGACTCTTTATCAGACAGCAAG 59.131 45.833 3.58 0.00 45.46 4.01
544 545 4.284490 ACCTGACTCTTTATCAGACAGCAA 59.716 41.667 3.58 0.00 45.46 3.91
545 546 3.834813 ACCTGACTCTTTATCAGACAGCA 59.165 43.478 3.58 0.00 45.46 4.41
546 547 4.464069 ACCTGACTCTTTATCAGACAGC 57.536 45.455 3.58 0.00 45.46 4.40
547 548 6.459066 TCAAACCTGACTCTTTATCAGACAG 58.541 40.000 3.58 0.00 45.46 3.51
548 549 6.419484 TCAAACCTGACTCTTTATCAGACA 57.581 37.500 3.58 0.00 45.46 3.41
562 563 5.680619 ACAGTTTCAGTATGTCAAACCTGA 58.319 37.500 0.00 0.00 37.40 3.86
563 564 6.377327 AACAGTTTCAGTATGTCAAACCTG 57.623 37.500 0.00 0.00 37.40 4.00
564 565 5.236478 CGAACAGTTTCAGTATGTCAAACCT 59.764 40.000 0.00 0.00 37.40 3.50
565 566 5.440685 CGAACAGTTTCAGTATGTCAAACC 58.559 41.667 0.00 0.00 37.40 3.27
566 567 5.007332 ACCGAACAGTTTCAGTATGTCAAAC 59.993 40.000 0.00 0.00 37.40 2.93
567 568 5.120399 ACCGAACAGTTTCAGTATGTCAAA 58.880 37.500 0.00 0.00 37.40 2.69
568 569 4.699637 ACCGAACAGTTTCAGTATGTCAA 58.300 39.130 0.00 0.00 37.40 3.18
569 570 4.330944 ACCGAACAGTTTCAGTATGTCA 57.669 40.909 0.00 0.00 37.40 3.58
570 571 4.748102 TGAACCGAACAGTTTCAGTATGTC 59.252 41.667 0.00 0.00 37.40 3.06
571 572 4.699637 TGAACCGAACAGTTTCAGTATGT 58.300 39.130 0.00 0.00 37.40 2.29
572 573 5.666969 TTGAACCGAACAGTTTCAGTATG 57.333 39.130 0.00 0.00 37.54 2.39
573 574 6.347402 CGATTTGAACCGAACAGTTTCAGTAT 60.347 38.462 0.00 0.00 0.00 2.12
574 575 5.050634 CGATTTGAACCGAACAGTTTCAGTA 60.051 40.000 0.00 0.00 0.00 2.74
575 576 4.260620 CGATTTGAACCGAACAGTTTCAGT 60.261 41.667 0.00 0.00 0.00 3.41
576 577 4.025229 TCGATTTGAACCGAACAGTTTCAG 60.025 41.667 0.00 0.00 0.00 3.02
577 578 3.872182 TCGATTTGAACCGAACAGTTTCA 59.128 39.130 0.00 0.00 0.00 2.69
578 579 4.025145 ACTCGATTTGAACCGAACAGTTTC 60.025 41.667 0.00 0.00 34.17 2.78
579 580 3.875134 ACTCGATTTGAACCGAACAGTTT 59.125 39.130 0.00 0.00 34.17 2.66
580 581 3.247648 CACTCGATTTGAACCGAACAGTT 59.752 43.478 0.00 0.00 34.17 3.16
581 582 2.800544 CACTCGATTTGAACCGAACAGT 59.199 45.455 0.00 0.00 34.17 3.55
582 583 3.057019 TCACTCGATTTGAACCGAACAG 58.943 45.455 0.00 0.00 34.17 3.16
583 584 2.798283 GTCACTCGATTTGAACCGAACA 59.202 45.455 0.00 0.00 34.17 3.18
584 585 2.160013 CGTCACTCGATTTGAACCGAAC 60.160 50.000 0.00 0.00 42.86 3.95
585 586 2.055838 CGTCACTCGATTTGAACCGAA 58.944 47.619 0.00 0.00 42.86 4.30
586 587 1.267533 TCGTCACTCGATTTGAACCGA 59.732 47.619 0.00 2.98 44.01 4.69
587 588 1.693467 TCGTCACTCGATTTGAACCG 58.307 50.000 0.00 0.89 44.01 4.44
597 598 5.003590 GCTATTTACTCTGTTTCGTCACTCG 59.996 44.000 0.00 0.00 41.41 4.18
598 599 5.862323 TGCTATTTACTCTGTTTCGTCACTC 59.138 40.000 0.00 0.00 0.00 3.51
599 600 5.779922 TGCTATTTACTCTGTTTCGTCACT 58.220 37.500 0.00 0.00 0.00 3.41
600 601 6.648725 ATGCTATTTACTCTGTTTCGTCAC 57.351 37.500 0.00 0.00 0.00 3.67
601 602 8.766000 TTTATGCTATTTACTCTGTTTCGTCA 57.234 30.769 0.00 0.00 0.00 4.35
602 603 9.474249 GTTTTATGCTATTTACTCTGTTTCGTC 57.526 33.333 0.00 0.00 0.00 4.20
603 604 9.216117 AGTTTTATGCTATTTACTCTGTTTCGT 57.784 29.630 0.00 0.00 0.00 3.85
608 609 9.601217 CCAGTAGTTTTATGCTATTTACTCTGT 57.399 33.333 0.00 0.00 0.00 3.41
672 674 6.433766 CAACTGGTAGCTTTCTGAGAAAAAG 58.566 40.000 9.15 0.00 36.91 2.27
741 745 2.540973 GCGGTCAGGAAAACAGTTCAAC 60.541 50.000 0.00 0.00 0.00 3.18
748 752 1.890041 CCACGCGGTCAGGAAAACA 60.890 57.895 12.47 0.00 0.00 2.83
763 767 2.750350 CCTGACAGGTGGGTCCAC 59.250 66.667 13.84 11.47 45.49 4.02
904 951 3.386237 GCAGGGGAGTGAGCGAGT 61.386 66.667 0.00 0.00 0.00 4.18
1020 1094 0.528470 CCTCCTTCGAGCTCGTTTCT 59.472 55.000 33.33 0.00 40.80 2.52
1033 1107 2.344203 CGACCTCGCACTCCTCCTT 61.344 63.158 0.00 0.00 0.00 3.36
1103 1182 4.347000 CCTAGGCCTACTAGCATTTAACCA 59.653 45.833 8.91 0.00 46.44 3.67
1254 1382 8.750298 TGTTCATTAACCCTAAACAGTGAAAAA 58.250 29.630 0.00 0.00 34.49 1.94
2069 2353 5.813513 TCTTGATGATATCAGCTTGGCTA 57.186 39.130 20.84 0.00 40.94 3.93
2109 2393 4.887748 TCTCTGTCAACTTGAACATCCTC 58.112 43.478 0.00 0.00 0.00 3.71
2200 2484 5.869579 TGATTTGCTCTAACTTCTCCTTGT 58.130 37.500 0.00 0.00 0.00 3.16
2313 2599 7.310361 CCCAAAATGTACACCCATAATCACTTT 60.310 37.037 0.00 0.00 0.00 2.66
2344 2635 5.298527 GCCAAACACTAGGTTAAACTTCACT 59.701 40.000 0.00 0.00 39.29 3.41
2709 3029 1.780309 TGGTGGAGTCATTGGGAAAGT 59.220 47.619 0.00 0.00 0.00 2.66
2718 3040 4.101448 GGCGGCTGGTGGAGTCAT 62.101 66.667 0.00 0.00 0.00 3.06
2774 3104 1.577736 CCCTCCTCCTCTGTGACATT 58.422 55.000 0.00 0.00 0.00 2.71
2888 3228 1.337823 GCGGTTGAACTCCTCTTGCTA 60.338 52.381 0.00 0.00 0.00 3.49
2910 3250 1.202582 CCAGTACCTTGTCGGAGAGTG 59.797 57.143 0.00 0.00 36.95 3.51
2969 3309 1.142688 AATGTCCTTCCCCTGCCACT 61.143 55.000 0.00 0.00 0.00 4.00
3121 3461 7.272978 ACTCTCTCTCAGATAGACTTACAGAC 58.727 42.308 0.00 0.00 0.00 3.51
3183 3544 4.469657 TCAAAAGGGTAGCATCAAACACT 58.530 39.130 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.