Multiple sequence alignment - TraesCS6D01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G100600 chr6D 100.000 2634 0 0 1 2634 63717861 63715228 0.000000e+00 4865.0
1 TraesCS6D01G100600 chr6D 98.193 332 6 0 1 332 367337085 367336754 4.890000e-162 580.0
2 TraesCS6D01G100600 chr6D 98.193 332 6 0 1 332 390611108 390611439 4.890000e-162 580.0
3 TraesCS6D01G100600 chr6D 97.892 332 7 0 1 332 367310432 367310101 2.270000e-160 575.0
4 TraesCS6D01G100600 chr6D 97.590 332 8 0 1 332 139575970 139576301 1.060000e-158 569.0
5 TraesCS6D01G100600 chr6D 92.593 54 3 1 1876 1928 62122922 62122869 2.810000e-10 76.8
6 TraesCS6D01G100600 chr3D 98.507 1407 21 0 333 1739 571706051 571707457 0.000000e+00 2483.0
7 TraesCS6D01G100600 chr3D 97.523 1413 29 3 333 1743 598465938 598464530 0.000000e+00 2410.0
8 TraesCS6D01G100600 chr3D 94.872 78 4 0 1742 1819 445035203 445035126 3.560000e-24 122.0
9 TraesCS6D01G100600 chr1B 91.986 1410 108 4 333 1739 638041746 638043153 0.000000e+00 1973.0
10 TraesCS6D01G100600 chr1B 97.297 74 2 0 1742 1815 57618205 57618132 2.750000e-25 126.0
11 TraesCS6D01G100600 chr1B 89.655 58 2 4 1874 1929 171887311 171887366 1.310000e-08 71.3
12 TraesCS6D01G100600 chr6B 88.606 1413 151 7 333 1742 665718866 665717461 0.000000e+00 1709.0
13 TraesCS6D01G100600 chr6B 77.389 314 25 20 1806 2087 55334861 55335160 7.600000e-31 145.0
14 TraesCS6D01G100600 chr6B 97.260 73 2 0 1742 1814 187836840 187836768 9.900000e-25 124.0
15 TraesCS6D01G100600 chr6B 90.196 51 3 2 1877 1926 166127581 166127630 6.090000e-07 65.8
16 TraesCS6D01G100600 chr7D 86.128 966 100 14 607 1567 579142282 579143218 0.000000e+00 1011.0
17 TraesCS6D01G100600 chr7D 97.892 332 6 1 1 332 458951206 458950876 8.180000e-160 573.0
18 TraesCS6D01G100600 chr7D 91.971 274 20 2 1811 2084 91111858 91112129 1.480000e-102 383.0
19 TraesCS6D01G100600 chr7D 92.000 275 18 4 1811 2084 91114547 91114818 1.480000e-102 383.0
20 TraesCS6D01G100600 chr7D 79.917 483 92 3 1075 1556 91811398 91811876 1.500000e-92 350.0
21 TraesCS6D01G100600 chr7B 85.640 961 99 15 610 1567 643339548 643340472 0.000000e+00 974.0
22 TraesCS6D01G100600 chr7B 79.290 507 94 7 1075 1580 42777553 42777057 6.980000e-91 344.0
23 TraesCS6D01G100600 chr7B 76.316 304 28 20 1811 2084 692424865 692424576 3.560000e-24 122.0
24 TraesCS6D01G100600 chr7B 94.805 77 4 0 1740 1816 15305733 15305657 1.280000e-23 121.0
25 TraesCS6D01G100600 chr7B 92.771 83 6 0 1742 1824 744645486 744645404 1.280000e-23 121.0
26 TraesCS6D01G100600 chr2D 98.193 332 6 0 1 332 350352080 350351749 4.890000e-162 580.0
27 TraesCS6D01G100600 chr2D 88.158 76 8 1 1849 1923 153362546 153362471 3.610000e-14 89.8
28 TraesCS6D01G100600 chr2D 97.143 35 1 0 2278 2312 630004991 630004957 2.830000e-05 60.2
29 TraesCS6D01G100600 chr5B 97.892 332 7 0 1 332 18101634 18101303 2.270000e-160 575.0
30 TraesCS6D01G100600 chr4B 97.892 332 7 0 1 332 532584908 532584577 2.270000e-160 575.0
31 TraesCS6D01G100600 chr4B 97.892 332 7 0 1 332 585009408 585009077 2.270000e-160 575.0
32 TraesCS6D01G100600 chrUn 91.971 274 20 2 1811 2084 310170092 310170363 1.480000e-102 383.0
33 TraesCS6D01G100600 chrUn 91.971 274 20 2 1811 2084 310172783 310173054 1.480000e-102 383.0
34 TraesCS6D01G100600 chr7A 79.958 474 90 3 1075 1547 93489522 93489991 6.980000e-91 344.0
35 TraesCS6D01G100600 chr6A 86.100 259 26 7 2331 2581 80821471 80821215 1.200000e-68 270.0
36 TraesCS6D01G100600 chr6A 85.393 178 14 6 2162 2328 80820852 80820676 9.690000e-40 174.0
37 TraesCS6D01G100600 chr6A 90.909 55 4 1 1875 1928 79276259 79276205 3.640000e-09 73.1
38 TraesCS6D01G100600 chr3B 98.611 72 1 0 1742 1813 199926594 199926523 7.650000e-26 128.0
39 TraesCS6D01G100600 chr2B 96.053 76 3 0 1743 1818 772605053 772604978 9.900000e-25 124.0
40 TraesCS6D01G100600 chr2B 97.143 35 1 0 2278 2312 772976545 772976511 2.830000e-05 60.2
41 TraesCS6D01G100600 chr5D 97.222 72 2 0 1742 1813 501822786 501822715 3.560000e-24 122.0
42 TraesCS6D01G100600 chr5D 97.222 72 2 0 1742 1813 501862491 501862420 3.560000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G100600 chr6D 63715228 63717861 2633 True 4865 4865 100.0000 1 2634 1 chr6D.!!$R2 2633
1 TraesCS6D01G100600 chr3D 571706051 571707457 1406 False 2483 2483 98.5070 333 1739 1 chr3D.!!$F1 1406
2 TraesCS6D01G100600 chr3D 598464530 598465938 1408 True 2410 2410 97.5230 333 1743 1 chr3D.!!$R2 1410
3 TraesCS6D01G100600 chr1B 638041746 638043153 1407 False 1973 1973 91.9860 333 1739 1 chr1B.!!$F2 1406
4 TraesCS6D01G100600 chr6B 665717461 665718866 1405 True 1709 1709 88.6060 333 1742 1 chr6B.!!$R2 1409
5 TraesCS6D01G100600 chr7D 579142282 579143218 936 False 1011 1011 86.1280 607 1567 1 chr7D.!!$F2 960
6 TraesCS6D01G100600 chr7D 91111858 91114818 2960 False 383 383 91.9855 1811 2084 2 chr7D.!!$F3 273
7 TraesCS6D01G100600 chr7B 643339548 643340472 924 False 974 974 85.6400 610 1567 1 chr7B.!!$F1 957
8 TraesCS6D01G100600 chrUn 310170092 310173054 2962 False 383 383 91.9710 1811 2084 2 chrUn.!!$F1 273
9 TraesCS6D01G100600 chr6A 80820676 80821471 795 True 222 270 85.7465 2162 2581 2 chr6A.!!$R2 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 324 0.032813 ATTTGGCCACCTCCTGATGG 60.033 55.0 3.88 0.0 39.16 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1810 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.562639 GATGTGCCGATGCGTAGTA 57.437 52.632 0.00 0.00 41.78 1.82
19 20 1.129326 GATGTGCCGATGCGTAGTAC 58.871 55.000 0.00 0.00 41.78 2.73
20 21 0.594028 ATGTGCCGATGCGTAGTACG 60.594 55.000 18.37 18.37 45.88 3.67
21 22 1.942712 GTGCCGATGCGTAGTACGG 60.943 63.158 23.29 8.22 42.82 4.02
23 24 2.354305 CCGATGCGTAGTACGGGC 60.354 66.667 23.29 8.86 42.82 6.13
24 25 2.410060 CGATGCGTAGTACGGGCA 59.590 61.111 23.29 14.19 42.82 5.36
25 26 1.657487 CGATGCGTAGTACGGGCAG 60.657 63.158 23.29 0.68 42.82 4.85
26 27 1.731700 GATGCGTAGTACGGGCAGA 59.268 57.895 23.29 0.00 42.82 4.26
28 29 0.102481 ATGCGTAGTACGGGCAGAAG 59.898 55.000 23.29 0.00 42.82 2.85
29 30 1.877165 GCGTAGTACGGGCAGAAGC 60.877 63.158 23.29 0.97 42.82 3.86
30 31 1.807886 CGTAGTACGGGCAGAAGCT 59.192 57.895 15.02 0.00 38.08 3.74
31 32 0.525668 CGTAGTACGGGCAGAAGCTG 60.526 60.000 15.02 0.00 38.08 4.24
32 33 0.179108 GTAGTACGGGCAGAAGCTGG 60.179 60.000 0.00 0.00 41.70 4.85
34 35 0.978146 AGTACGGGCAGAAGCTGGAT 60.978 55.000 0.00 0.00 41.70 3.41
35 36 0.530870 GTACGGGCAGAAGCTGGATC 60.531 60.000 0.00 0.00 41.70 3.36
36 37 0.975556 TACGGGCAGAAGCTGGATCA 60.976 55.000 0.00 0.00 41.70 2.92
37 38 1.817099 CGGGCAGAAGCTGGATCAC 60.817 63.158 0.00 0.00 41.70 3.06
38 39 1.817099 GGGCAGAAGCTGGATCACG 60.817 63.158 0.00 0.00 41.70 4.35
39 40 1.817099 GGCAGAAGCTGGATCACGG 60.817 63.158 0.00 0.00 41.70 4.94
40 41 1.219124 GCAGAAGCTGGATCACGGA 59.781 57.895 0.00 0.00 37.91 4.69
41 42 1.086634 GCAGAAGCTGGATCACGGAC 61.087 60.000 0.00 0.00 37.91 4.79
42 43 0.534412 CAGAAGCTGGATCACGGACT 59.466 55.000 0.00 0.00 0.00 3.85
43 44 0.534412 AGAAGCTGGATCACGGACTG 59.466 55.000 0.00 0.00 0.00 3.51
44 45 1.078848 AAGCTGGATCACGGACTGC 60.079 57.895 0.00 0.00 0.00 4.40
45 46 2.512515 GCTGGATCACGGACTGCC 60.513 66.667 0.00 0.00 0.00 4.85
47 48 1.153489 CTGGATCACGGACTGCCAG 60.153 63.158 0.00 0.00 40.03 4.85
49 50 1.191489 TGGATCACGGACTGCCAGAA 61.191 55.000 0.00 0.00 0.00 3.02
50 51 0.741221 GGATCACGGACTGCCAGAAC 60.741 60.000 0.00 0.00 0.00 3.01
51 52 0.247736 GATCACGGACTGCCAGAACT 59.752 55.000 0.00 0.00 0.00 3.01
52 53 0.036952 ATCACGGACTGCCAGAACTG 60.037 55.000 0.00 0.00 0.00 3.16
70 71 4.507879 GGATCCACCCGTACGTTG 57.492 61.111 15.21 10.61 0.00 4.10
71 72 1.153509 GGATCCACCCGTACGTTGG 60.154 63.158 21.60 21.60 0.00 3.77
73 74 2.510064 GATCCACCCGTACGTTGGCA 62.510 60.000 22.42 14.38 0.00 4.92
74 75 2.114488 ATCCACCCGTACGTTGGCAA 62.114 55.000 22.42 11.15 0.00 4.52
75 76 1.892862 CCACCCGTACGTTGGCAAA 60.893 57.895 17.44 0.00 0.00 3.68
76 77 1.445716 CCACCCGTACGTTGGCAAAA 61.446 55.000 17.44 0.00 0.00 2.44
77 78 0.040781 CACCCGTACGTTGGCAAAAG 60.041 55.000 15.21 1.45 0.00 2.27
79 80 1.081708 CCGTACGTTGGCAAAAGGC 60.082 57.895 15.21 0.00 43.74 4.35
89 90 3.593834 GCAAAAGGCAAGAGGTTGG 57.406 52.632 0.00 0.00 43.97 3.77
96 97 2.429930 CAAGAGGTTGGCCACGGA 59.570 61.111 3.88 0.00 37.19 4.69
97 98 1.672356 CAAGAGGTTGGCCACGGAG 60.672 63.158 3.88 0.00 37.19 4.63
99 100 3.637273 GAGGTTGGCCACGGAGGT 61.637 66.667 3.88 0.00 40.61 3.85
100 101 2.203877 AGGTTGGCCACGGAGGTA 60.204 61.111 3.88 0.00 40.61 3.08
101 102 2.046604 GGTTGGCCACGGAGGTAC 60.047 66.667 3.88 0.00 40.61 3.34
103 104 1.373812 GTTGGCCACGGAGGTACTT 59.626 57.895 3.88 0.00 41.55 2.24
104 105 0.609662 GTTGGCCACGGAGGTACTTA 59.390 55.000 3.88 0.00 41.55 2.24
106 107 1.575419 TGGCCACGGAGGTACTTATT 58.425 50.000 0.00 0.00 41.55 1.40
107 108 2.749600 TGGCCACGGAGGTACTTATTA 58.250 47.619 0.00 0.00 41.55 0.98
108 109 2.431782 TGGCCACGGAGGTACTTATTAC 59.568 50.000 0.00 0.00 41.55 1.89
109 110 2.544486 GGCCACGGAGGTACTTATTACG 60.544 54.545 0.00 0.00 41.55 3.18
110 111 2.544486 GCCACGGAGGTACTTATTACGG 60.544 54.545 0.00 0.00 41.55 4.02
111 112 2.951642 CCACGGAGGTACTTATTACGGA 59.048 50.000 0.00 0.00 41.55 4.69
113 114 4.543692 CACGGAGGTACTTATTACGGATG 58.456 47.826 0.00 0.00 41.55 3.51
114 115 4.276678 CACGGAGGTACTTATTACGGATGA 59.723 45.833 0.00 0.00 41.55 2.92
116 117 5.048224 ACGGAGGTACTTATTACGGATGATG 60.048 44.000 0.00 0.00 41.55 3.07
117 118 5.621555 CGGAGGTACTTATTACGGATGATGG 60.622 48.000 0.00 0.00 41.55 3.51
118 119 5.245526 GGAGGTACTTATTACGGATGATGGT 59.754 44.000 0.00 0.00 41.55 3.55
120 121 5.836898 AGGTACTTATTACGGATGATGGTGA 59.163 40.000 0.00 0.00 27.25 4.02
121 122 6.015350 AGGTACTTATTACGGATGATGGTGAG 60.015 42.308 0.00 0.00 27.25 3.51
123 124 2.550830 ATTACGGATGATGGTGAGCC 57.449 50.000 0.00 0.00 0.00 4.70
144 145 3.825623 GGCCTCCCTCCCCATTGG 61.826 72.222 0.00 0.00 0.00 3.16
145 146 4.529731 GCCTCCCTCCCCATTGGC 62.530 72.222 0.00 0.00 0.00 4.52
146 147 3.023116 CCTCCCTCCCCATTGGCA 61.023 66.667 0.00 0.00 0.00 4.92
147 148 2.625460 CCTCCCTCCCCATTGGCAA 61.625 63.158 0.68 0.68 0.00 4.52
150 151 0.555769 TCCCTCCCCATTGGCAATAC 59.444 55.000 13.23 0.00 0.00 1.89
151 152 0.823356 CCCTCCCCATTGGCAATACG 60.823 60.000 13.23 5.97 0.00 3.06
152 153 1.455383 CCTCCCCATTGGCAATACGC 61.455 60.000 13.23 0.00 41.28 4.42
162 163 3.622459 GCAATACGCCACAACCATC 57.378 52.632 0.00 0.00 32.94 3.51
163 164 0.248054 GCAATACGCCACAACCATCG 60.248 55.000 0.00 0.00 32.94 3.84
164 165 0.376852 CAATACGCCACAACCATCGG 59.623 55.000 0.00 0.00 0.00 4.18
165 166 0.746563 AATACGCCACAACCATCGGG 60.747 55.000 0.00 0.00 41.29 5.14
177 178 2.285368 ATCGGGTCAGGAGGGCAA 60.285 61.111 0.00 0.00 0.00 4.52
178 179 1.694169 ATCGGGTCAGGAGGGCAAT 60.694 57.895 0.00 0.00 0.00 3.56
179 180 1.987807 ATCGGGTCAGGAGGGCAATG 61.988 60.000 0.00 0.00 0.00 2.82
180 181 2.971598 CGGGTCAGGAGGGCAATGT 61.972 63.158 0.00 0.00 0.00 2.71
181 182 1.384191 GGGTCAGGAGGGCAATGTT 59.616 57.895 0.00 0.00 0.00 2.71
182 183 0.681243 GGGTCAGGAGGGCAATGTTC 60.681 60.000 0.00 0.00 0.00 3.18
183 184 0.038166 GGTCAGGAGGGCAATGTTCA 59.962 55.000 0.00 0.00 0.00 3.18
184 185 1.341383 GGTCAGGAGGGCAATGTTCAT 60.341 52.381 0.00 0.00 0.00 2.57
185 186 1.747355 GTCAGGAGGGCAATGTTCATG 59.253 52.381 0.00 0.00 0.00 3.07
186 187 0.458669 CAGGAGGGCAATGTTCATGC 59.541 55.000 0.00 0.00 43.08 4.06
189 190 0.099436 GAGGGCAATGTTCATGCGTC 59.901 55.000 0.00 0.00 44.75 5.19
190 191 1.226379 GGGCAATGTTCATGCGTCG 60.226 57.895 0.00 0.00 44.75 5.12
191 192 1.226379 GGCAATGTTCATGCGTCGG 60.226 57.895 0.00 0.00 44.75 4.79
192 193 1.226379 GCAATGTTCATGCGTCGGG 60.226 57.895 0.00 0.00 33.57 5.14
195 196 1.016627 AATGTTCATGCGTCGGGATG 58.983 50.000 0.00 0.00 42.78 3.51
211 212 0.179006 GATGACAGGATCCCAAGGCC 60.179 60.000 8.55 0.00 0.00 5.19
212 213 0.920763 ATGACAGGATCCCAAGGCCA 60.921 55.000 8.55 2.59 0.00 5.36
214 215 2.276740 CAGGATCCCAAGGCCACC 59.723 66.667 8.55 0.00 0.00 4.61
215 216 3.023735 AGGATCCCAAGGCCACCC 61.024 66.667 8.55 0.00 0.00 4.61
216 217 3.023735 GGATCCCAAGGCCACCCT 61.024 66.667 5.01 0.00 45.77 4.34
217 218 2.276740 GATCCCAAGGCCACCCTG 59.723 66.667 5.01 0.00 41.90 4.45
218 219 3.350163 ATCCCAAGGCCACCCTGG 61.350 66.667 5.01 5.82 41.90 4.45
220 221 4.366684 CCCAAGGCCACCCTGGTC 62.367 72.222 5.01 0.00 44.07 4.02
225 226 2.283173 GGCCACCCTGGTCTTTGG 60.283 66.667 0.00 0.00 39.55 3.28
231 232 2.049435 CCCTGGTCTTTGGGTTTGC 58.951 57.895 0.00 0.00 38.65 3.68
233 234 1.118838 CCTGGTCTTTGGGTTTGCAA 58.881 50.000 0.00 0.00 0.00 4.08
234 235 1.484240 CCTGGTCTTTGGGTTTGCAAA 59.516 47.619 8.05 8.05 0.00 3.68
235 236 2.104622 CCTGGTCTTTGGGTTTGCAAAT 59.895 45.455 16.21 0.00 0.00 2.32
236 237 3.132925 CTGGTCTTTGGGTTTGCAAATG 58.867 45.455 16.21 2.54 0.00 2.32
237 238 2.503356 TGGTCTTTGGGTTTGCAAATGT 59.497 40.909 16.21 0.00 0.00 2.71
238 239 3.130633 GGTCTTTGGGTTTGCAAATGTC 58.869 45.455 16.21 8.58 0.00 3.06
239 240 2.794350 GTCTTTGGGTTTGCAAATGTCG 59.206 45.455 16.21 2.82 0.00 4.35
240 241 2.134346 CTTTGGGTTTGCAAATGTCGG 58.866 47.619 16.21 1.28 0.00 4.79
241 242 0.390860 TTGGGTTTGCAAATGTCGGG 59.609 50.000 16.21 0.00 0.00 5.14
244 245 1.365633 GTTTGCAAATGTCGGGCCA 59.634 52.632 16.21 0.00 0.00 5.36
245 246 0.667184 GTTTGCAAATGTCGGGCCAG 60.667 55.000 16.21 0.00 0.00 4.85
246 247 2.433231 TTTGCAAATGTCGGGCCAGC 62.433 55.000 8.05 0.00 0.00 4.85
247 248 3.064324 GCAAATGTCGGGCCAGCT 61.064 61.111 4.39 0.00 0.00 4.24
248 249 3.056313 GCAAATGTCGGGCCAGCTC 62.056 63.158 4.39 0.00 0.00 4.09
250 251 1.675641 AAATGTCGGGCCAGCTCAC 60.676 57.895 4.39 0.00 0.00 3.51
253 254 4.101448 GTCGGGCCAGCTCACCAT 62.101 66.667 4.39 0.00 0.00 3.55
255 256 1.766059 TCGGGCCAGCTCACCATAT 60.766 57.895 4.39 0.00 0.00 1.78
272 273 3.804325 CCATATGGTACTTCTGCTTGTCG 59.196 47.826 14.09 0.00 0.00 4.35
275 276 1.019805 GGTACTTCTGCTTGTCGCCC 61.020 60.000 0.00 0.00 38.05 6.13
276 277 0.037232 GTACTTCTGCTTGTCGCCCT 60.037 55.000 0.00 0.00 38.05 5.19
278 279 1.004560 CTTCTGCTTGTCGCCCTCA 60.005 57.895 0.00 0.00 38.05 3.86
279 280 1.294659 CTTCTGCTTGTCGCCCTCAC 61.295 60.000 0.00 0.00 38.05 3.51
280 281 2.731691 TTCTGCTTGTCGCCCTCACC 62.732 60.000 0.00 0.00 38.05 4.02
281 282 3.535629 CTGCTTGTCGCCCTCACCA 62.536 63.158 0.00 0.00 38.05 4.17
282 283 2.743928 GCTTGTCGCCCTCACCAG 60.744 66.667 0.00 0.00 0.00 4.00
283 284 2.743928 CTTGTCGCCCTCACCAGC 60.744 66.667 0.00 0.00 0.00 4.85
284 285 4.329545 TTGTCGCCCTCACCAGCC 62.330 66.667 0.00 0.00 0.00 4.85
290 291 4.101448 CCCTCACCAGCCCGGAAG 62.101 72.222 0.73 0.00 38.63 3.46
291 292 3.003173 CCTCACCAGCCCGGAAGA 61.003 66.667 0.73 0.00 38.63 2.87
293 294 1.376037 CTCACCAGCCCGGAAGAAC 60.376 63.158 0.73 0.00 38.63 3.01
294 295 2.359975 CACCAGCCCGGAAGAACC 60.360 66.667 0.73 0.00 38.63 3.62
295 296 2.529389 ACCAGCCCGGAAGAACCT 60.529 61.111 0.73 0.00 38.63 3.50
296 297 2.269241 CCAGCCCGGAAGAACCTC 59.731 66.667 0.73 0.00 36.56 3.85
297 298 2.125512 CAGCCCGGAAGAACCTCG 60.126 66.667 0.73 0.00 36.31 4.63
298 299 2.283676 AGCCCGGAAGAACCTCGA 60.284 61.111 0.73 0.00 36.31 4.04
299 300 2.125633 GCCCGGAAGAACCTCGAC 60.126 66.667 0.73 0.00 36.31 4.20
304 305 1.171308 CGGAAGAACCTCGACTGGTA 58.829 55.000 0.00 0.00 39.83 3.25
306 307 2.165845 CGGAAGAACCTCGACTGGTATT 59.834 50.000 0.00 0.00 39.83 1.89
307 308 3.368116 CGGAAGAACCTCGACTGGTATTT 60.368 47.826 0.00 0.00 39.83 1.40
308 309 3.933332 GGAAGAACCTCGACTGGTATTTG 59.067 47.826 0.00 0.00 39.83 2.32
309 310 3.611766 AGAACCTCGACTGGTATTTGG 57.388 47.619 0.00 0.00 39.83 3.28
311 312 0.252197 ACCTCGACTGGTATTTGGCC 59.748 55.000 0.00 0.00 38.79 5.36
312 313 0.251916 CCTCGACTGGTATTTGGCCA 59.748 55.000 0.00 0.00 34.42 5.36
313 314 1.369625 CTCGACTGGTATTTGGCCAC 58.630 55.000 3.88 0.00 31.85 5.01
314 315 0.035820 TCGACTGGTATTTGGCCACC 60.036 55.000 3.88 3.40 35.24 4.61
315 316 0.035439 CGACTGGTATTTGGCCACCT 60.035 55.000 3.88 0.00 35.73 4.00
316 317 1.751437 GACTGGTATTTGGCCACCTC 58.249 55.000 3.88 0.00 35.73 3.85
317 318 0.331616 ACTGGTATTTGGCCACCTCC 59.668 55.000 3.88 6.72 35.73 4.30
319 320 0.331278 TGGTATTTGGCCACCTCCTG 59.669 55.000 3.88 0.00 35.73 3.86
320 321 0.623723 GGTATTTGGCCACCTCCTGA 59.376 55.000 3.88 0.00 0.00 3.86
321 322 1.215423 GGTATTTGGCCACCTCCTGAT 59.785 52.381 3.88 0.00 0.00 2.90
322 323 2.301346 GTATTTGGCCACCTCCTGATG 58.699 52.381 3.88 0.00 0.00 3.07
323 324 0.032813 ATTTGGCCACCTCCTGATGG 60.033 55.000 3.88 0.00 39.16 3.51
324 325 1.139498 TTTGGCCACCTCCTGATGGA 61.139 55.000 3.88 0.00 38.34 3.41
472 474 5.297547 TCGCAAAGAACTCATTTAGACAGT 58.702 37.500 0.00 0.00 0.00 3.55
559 562 1.973281 CTTGGGCACACAATCCGCT 60.973 57.895 0.00 0.00 0.00 5.52
1048 1062 1.562575 CTCCGGCGTTAAGTTTGCGT 61.563 55.000 6.01 0.00 0.00 5.24
1739 1756 2.936498 CTCGTCCACGCCAGATAATTTT 59.064 45.455 0.00 0.00 39.60 1.82
1743 1760 3.560068 GTCCACGCCAGATAATTTTCGAT 59.440 43.478 0.00 0.00 0.00 3.59
1744 1761 3.559655 TCCACGCCAGATAATTTTCGATG 59.440 43.478 0.00 0.00 0.00 3.84
1746 1763 4.509970 CCACGCCAGATAATTTTCGATGTA 59.490 41.667 0.00 0.00 0.00 2.29
1747 1764 5.179368 CCACGCCAGATAATTTTCGATGTAT 59.821 40.000 0.00 0.00 0.00 2.29
1748 1765 6.299604 CACGCCAGATAATTTTCGATGTATC 58.700 40.000 0.00 0.00 0.00 2.24
1749 1766 6.146184 CACGCCAGATAATTTTCGATGTATCT 59.854 38.462 0.00 0.00 34.38 1.98
1750 1767 7.328493 CACGCCAGATAATTTTCGATGTATCTA 59.672 37.037 7.13 0.00 32.73 1.98
1752 1769 7.463383 CGCCAGATAATTTTCGATGTATCTAGC 60.463 40.741 11.79 11.79 35.60 3.42
1753 1770 7.331934 GCCAGATAATTTTCGATGTATCTAGCA 59.668 37.037 14.62 0.00 37.53 3.49
1754 1771 8.651588 CCAGATAATTTTCGATGTATCTAGCAC 58.348 37.037 7.13 0.00 32.73 4.40
1755 1772 9.416794 CAGATAATTTTCGATGTATCTAGCACT 57.583 33.333 7.13 0.00 32.73 4.40
1760 1777 9.601217 AATTTTCGATGTATCTAGCACTAACTT 57.399 29.630 0.00 0.00 0.00 2.66
1761 1778 7.987268 TTTCGATGTATCTAGCACTAACTTG 57.013 36.000 0.00 0.00 0.00 3.16
1762 1779 6.937436 TCGATGTATCTAGCACTAACTTGA 57.063 37.500 0.00 0.00 0.00 3.02
1763 1780 7.511959 TCGATGTATCTAGCACTAACTTGAT 57.488 36.000 0.00 0.00 36.37 2.57
1764 1781 7.363431 TCGATGTATCTAGCACTAACTTGATG 58.637 38.462 0.00 0.00 34.60 3.07
1765 1782 6.088749 CGATGTATCTAGCACTAACTTGATGC 59.911 42.308 0.00 0.00 39.74 3.91
1773 1790 5.801350 GCACTAACTTGATGCTTGATACA 57.199 39.130 0.00 0.00 36.40 2.29
1774 1791 6.369059 GCACTAACTTGATGCTTGATACAT 57.631 37.500 0.00 0.00 36.40 2.29
1775 1792 6.425504 GCACTAACTTGATGCTTGATACATC 58.574 40.000 0.00 0.00 43.46 3.06
1776 1793 6.512415 GCACTAACTTGATGCTTGATACATCC 60.512 42.308 1.61 0.00 42.68 3.51
1777 1794 6.539826 CACTAACTTGATGCTTGATACATCCA 59.460 38.462 1.61 0.00 42.68 3.41
1778 1795 7.228108 CACTAACTTGATGCTTGATACATCCAT 59.772 37.037 1.61 0.00 42.68 3.41
1779 1796 7.776969 ACTAACTTGATGCTTGATACATCCATT 59.223 33.333 1.61 0.00 42.68 3.16
1780 1797 7.414222 AACTTGATGCTTGATACATCCATTT 57.586 32.000 1.61 0.00 42.68 2.32
1781 1798 6.802608 ACTTGATGCTTGATACATCCATTTG 58.197 36.000 1.61 0.00 42.68 2.32
1782 1799 6.604396 ACTTGATGCTTGATACATCCATTTGA 59.396 34.615 1.61 0.00 42.68 2.69
1783 1800 6.628919 TGATGCTTGATACATCCATTTGAG 57.371 37.500 1.61 0.00 42.68 3.02
1784 1801 5.533528 TGATGCTTGATACATCCATTTGAGG 59.466 40.000 1.61 0.00 42.68 3.86
1785 1802 4.209538 TGCTTGATACATCCATTTGAGGG 58.790 43.478 0.00 0.00 0.00 4.30
1790 1807 5.439721 TGATACATCCATTTGAGGGACAAG 58.560 41.667 0.00 0.00 39.77 3.16
1791 1808 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1792 1809 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1793 1810 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
1794 1811 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
1796 1813 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
1797 1814 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
1798 1815 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
1799 1816 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
1800 1817 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.00 32.00 5.14
1801 1818 0.250770 AGGGACAAGCTTTTCCGGAC 60.251 55.000 22.30 11.02 32.00 4.79
1802 1819 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
1803 1820 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
1804 1821 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
1805 1822 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
1806 1823 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
1807 1824 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
1809 1826 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
1810 1827 1.534717 TTTTCCGGACGGAGGGAGT 60.535 57.895 13.64 0.00 46.06 3.85
1811 1828 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
1814 1831 1.455217 CCGGACGGAGGGAGTATGT 60.455 63.158 4.40 0.00 37.50 2.29
1901 2783 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2028 2910 5.119931 TGCACATACAATTCTCACCAAAC 57.880 39.130 0.00 0.00 0.00 2.93
2062 2944 7.581213 TGATAATTTTATCTCCCGTTGCAAT 57.419 32.000 0.59 0.00 40.11 3.56
2063 2945 7.648142 TGATAATTTTATCTCCCGTTGCAATC 58.352 34.615 0.59 0.00 40.11 2.67
2064 2946 5.913137 AATTTTATCTCCCGTTGCAATCA 57.087 34.783 0.59 0.00 0.00 2.57
2065 2947 4.695217 TTTTATCTCCCGTTGCAATCAC 57.305 40.909 0.59 0.00 0.00 3.06
2066 2948 2.325583 TATCTCCCGTTGCAATCACC 57.674 50.000 0.59 0.00 0.00 4.02
2095 2977 4.691860 ATGTGCTAGTTGAAGACAATGC 57.308 40.909 0.00 0.00 38.32 3.56
2096 2978 3.475575 TGTGCTAGTTGAAGACAATGCA 58.524 40.909 0.00 0.00 38.32 3.96
2097 2979 3.250762 TGTGCTAGTTGAAGACAATGCAC 59.749 43.478 19.88 19.88 46.63 4.57
2098 2980 3.250762 GTGCTAGTTGAAGACAATGCACA 59.749 43.478 20.80 5.09 46.26 4.57
2099 2981 4.074259 TGCTAGTTGAAGACAATGCACAT 58.926 39.130 0.00 0.00 38.32 3.21
2100 2982 5.122239 GTGCTAGTTGAAGACAATGCACATA 59.878 40.000 20.80 0.00 46.26 2.29
2101 2983 5.704978 TGCTAGTTGAAGACAATGCACATAA 59.295 36.000 0.00 0.00 38.32 1.90
2102 2984 6.375174 TGCTAGTTGAAGACAATGCACATAAT 59.625 34.615 0.00 0.00 38.32 1.28
2103 2985 6.690098 GCTAGTTGAAGACAATGCACATAATG 59.310 38.462 0.00 0.00 38.32 1.90
2104 2986 6.822667 AGTTGAAGACAATGCACATAATGA 57.177 33.333 0.00 0.00 38.32 2.57
2105 2987 7.400599 AGTTGAAGACAATGCACATAATGAT 57.599 32.000 0.00 0.00 38.32 2.45
2106 2988 7.255569 AGTTGAAGACAATGCACATAATGATG 58.744 34.615 0.00 0.00 38.32 3.07
2107 2989 7.121611 AGTTGAAGACAATGCACATAATGATGA 59.878 33.333 0.00 0.00 38.32 2.92
2108 2990 7.393841 TGAAGACAATGCACATAATGATGAA 57.606 32.000 0.00 0.00 36.48 2.57
2109 2991 7.828712 TGAAGACAATGCACATAATGATGAAA 58.171 30.769 0.00 0.00 36.48 2.69
2110 2992 7.756272 TGAAGACAATGCACATAATGATGAAAC 59.244 33.333 0.00 0.00 36.48 2.78
2111 2993 7.160547 AGACAATGCACATAATGATGAAACA 57.839 32.000 0.00 0.00 36.48 2.83
2112 2994 7.031372 AGACAATGCACATAATGATGAAACAC 58.969 34.615 0.00 0.00 36.48 3.32
2113 2995 5.801444 ACAATGCACATAATGATGAAACACG 59.199 36.000 0.00 0.00 36.48 4.49
2114 2996 5.565592 ATGCACATAATGATGAAACACGT 57.434 34.783 0.00 0.00 36.48 4.49
2115 2997 5.369685 TGCACATAATGATGAAACACGTT 57.630 34.783 0.00 0.00 36.48 3.99
2116 2998 5.389778 TGCACATAATGATGAAACACGTTC 58.610 37.500 0.00 0.00 36.48 3.95
2117 2999 4.491942 GCACATAATGATGAAACACGTTCG 59.508 41.667 0.00 0.00 39.30 3.95
2118 3000 5.021389 CACATAATGATGAAACACGTTCGG 58.979 41.667 0.00 0.00 39.30 4.30
2119 3001 4.932799 ACATAATGATGAAACACGTTCGGA 59.067 37.500 0.00 0.00 39.30 4.55
2120 3002 3.806316 AATGATGAAACACGTTCGGAC 57.194 42.857 0.00 0.00 39.30 4.79
2121 3003 1.504359 TGATGAAACACGTTCGGACC 58.496 50.000 0.00 0.00 39.30 4.46
2122 3004 1.202545 TGATGAAACACGTTCGGACCA 60.203 47.619 0.00 0.00 39.30 4.02
2123 3005 1.193874 GATGAAACACGTTCGGACCAC 59.806 52.381 0.00 0.00 39.30 4.16
2124 3006 1.146957 TGAAACACGTTCGGACCACG 61.147 55.000 2.96 2.96 46.11 4.94
2141 3023 4.078363 CCACGTAATGGTGAAACACATC 57.922 45.455 0.00 0.00 44.46 3.06
2142 3024 3.119990 CCACGTAATGGTGAAACACATCC 60.120 47.826 0.00 0.00 44.46 3.51
2143 3025 3.500299 CACGTAATGGTGAAACACATCCA 59.500 43.478 0.00 0.00 40.38 3.41
2144 3026 3.751175 ACGTAATGGTGAAACACATCCAG 59.249 43.478 0.00 0.00 39.98 3.86
2145 3027 4.000325 CGTAATGGTGAAACACATCCAGA 59.000 43.478 0.00 0.00 39.98 3.86
2146 3028 4.093408 CGTAATGGTGAAACACATCCAGAG 59.907 45.833 0.00 0.00 39.98 3.35
2147 3029 1.896220 TGGTGAAACACATCCAGAGC 58.104 50.000 0.00 0.00 39.98 4.09
2148 3030 0.798776 GGTGAAACACATCCAGAGCG 59.201 55.000 0.00 0.00 39.98 5.03
2149 3031 0.166814 GTGAAACACATCCAGAGCGC 59.833 55.000 0.00 0.00 36.32 5.92
2150 3032 1.291184 TGAAACACATCCAGAGCGCG 61.291 55.000 0.00 0.00 0.00 6.86
2151 3033 2.568935 GAAACACATCCAGAGCGCGC 62.569 60.000 26.66 26.66 0.00 6.86
2152 3034 3.881952 AACACATCCAGAGCGCGCA 62.882 57.895 35.10 13.06 0.00 6.09
2153 3035 2.893895 CACATCCAGAGCGCGCAT 60.894 61.111 35.10 19.25 0.00 4.73
2154 3036 2.893895 ACATCCAGAGCGCGCATG 60.894 61.111 35.10 28.97 0.00 4.06
2155 3037 4.309347 CATCCAGAGCGCGCATGC 62.309 66.667 35.10 21.60 37.91 4.06
2166 3048 4.303603 CGCATGCGATCCGGCTTG 62.304 66.667 35.82 0.04 42.83 4.01
2167 3049 2.896854 GCATGCGATCCGGCTTGA 60.897 61.111 0.00 0.00 39.64 3.02
2168 3050 2.890109 GCATGCGATCCGGCTTGAG 61.890 63.158 0.00 0.00 39.64 3.02
2169 3051 1.522355 CATGCGATCCGGCTTGAGT 60.522 57.895 0.00 0.00 39.64 3.41
2170 3052 1.522355 ATGCGATCCGGCTTGAGTG 60.522 57.895 0.00 0.00 0.00 3.51
2171 3053 2.125512 GCGATCCGGCTTGAGTGT 60.126 61.111 0.00 0.00 0.00 3.55
2172 3054 2.167861 GCGATCCGGCTTGAGTGTC 61.168 63.158 0.00 0.00 0.00 3.67
2173 3055 1.513158 CGATCCGGCTTGAGTGTCT 59.487 57.895 0.00 0.00 0.00 3.41
2174 3056 0.738975 CGATCCGGCTTGAGTGTCTA 59.261 55.000 0.00 0.00 0.00 2.59
2175 3057 1.338337 CGATCCGGCTTGAGTGTCTAT 59.662 52.381 0.00 0.00 0.00 1.98
2176 3058 2.223829 CGATCCGGCTTGAGTGTCTATT 60.224 50.000 0.00 0.00 0.00 1.73
2177 3059 3.738281 CGATCCGGCTTGAGTGTCTATTT 60.738 47.826 0.00 0.00 0.00 1.40
2178 3060 3.247006 TCCGGCTTGAGTGTCTATTTC 57.753 47.619 0.00 0.00 0.00 2.17
2179 3061 2.832129 TCCGGCTTGAGTGTCTATTTCT 59.168 45.455 0.00 0.00 0.00 2.52
2180 3062 4.021229 TCCGGCTTGAGTGTCTATTTCTA 58.979 43.478 0.00 0.00 0.00 2.10
2181 3063 4.464951 TCCGGCTTGAGTGTCTATTTCTAA 59.535 41.667 0.00 0.00 0.00 2.10
2182 3064 4.806247 CCGGCTTGAGTGTCTATTTCTAAG 59.194 45.833 0.00 0.00 0.00 2.18
2183 3065 4.268884 CGGCTTGAGTGTCTATTTCTAAGC 59.731 45.833 0.00 0.00 38.73 3.09
2184 3066 5.178797 GGCTTGAGTGTCTATTTCTAAGCA 58.821 41.667 0.00 0.00 40.60 3.91
2185 3067 5.643777 GGCTTGAGTGTCTATTTCTAAGCAA 59.356 40.000 0.00 0.00 40.60 3.91
2186 3068 6.317391 GGCTTGAGTGTCTATTTCTAAGCAAT 59.683 38.462 0.00 0.00 40.60 3.56
2187 3069 7.495934 GGCTTGAGTGTCTATTTCTAAGCAATA 59.504 37.037 0.00 0.00 40.60 1.90
2188 3070 8.883731 GCTTGAGTGTCTATTTCTAAGCAATAA 58.116 33.333 0.00 0.00 39.14 1.40
2190 3072 9.719355 TTGAGTGTCTATTTCTAAGCAATAACA 57.281 29.630 0.00 0.00 0.00 2.41
2191 3073 9.719355 TGAGTGTCTATTTCTAAGCAATAACAA 57.281 29.630 0.00 0.00 0.00 2.83
2206 3088 9.899226 AAGCAATAACAAATACTTCTTGAGTTC 57.101 29.630 0.00 0.00 39.86 3.01
2207 3089 9.289782 AGCAATAACAAATACTTCTTGAGTTCT 57.710 29.630 0.00 0.00 39.86 3.01
2225 3107 9.952030 TTGAGTTCTATAATGTAATGTGTTGGA 57.048 29.630 0.00 0.00 0.00 3.53
2236 3118 9.829507 AATGTAATGTGTTGGATTTTCTGAAAA 57.170 25.926 17.04 17.04 34.41 2.29
2237 3119 9.829507 ATGTAATGTGTTGGATTTTCTGAAAAA 57.170 25.926 18.43 0.96 38.66 1.94
2238 3120 9.829507 TGTAATGTGTTGGATTTTCTGAAAAAT 57.170 25.926 18.43 8.23 45.55 1.82
2375 3257 8.841822 TCAAACATATGCAACGTAAAATTTACG 58.158 29.630 29.51 29.51 45.44 3.18
2410 3292 3.073678 TCAGTGATACGCATTTGCTGTT 58.926 40.909 0.51 0.00 39.32 3.16
2413 3295 5.353956 TCAGTGATACGCATTTGCTGTTATT 59.646 36.000 0.51 0.00 39.32 1.40
2416 3298 7.531871 CAGTGATACGCATTTGCTGTTATTATC 59.468 37.037 0.51 2.35 39.32 1.75
2418 3300 8.070171 GTGATACGCATTTGCTGTTATTATCTT 58.930 33.333 0.51 0.00 39.32 2.40
2419 3301 8.620416 TGATACGCATTTGCTGTTATTATCTTT 58.380 29.630 0.51 0.00 39.32 2.52
2420 3302 9.450807 GATACGCATTTGCTGTTATTATCTTTT 57.549 29.630 0.51 0.00 39.32 2.27
2421 3303 7.510428 ACGCATTTGCTGTTATTATCTTTTG 57.490 32.000 0.51 0.00 39.32 2.44
2423 3305 6.508404 CGCATTTGCTGTTATTATCTTTTGCC 60.508 38.462 0.51 0.00 39.32 4.52
2495 3383 8.682936 AAACATGATCAAAGTTTCTAGTGTCT 57.317 30.769 18.55 0.74 30.19 3.41
2496 3384 7.664082 ACATGATCAAAGTTTCTAGTGTCTG 57.336 36.000 0.00 0.00 0.00 3.51
2501 3389 7.653713 TGATCAAAGTTTCTAGTGTCTGACTTC 59.346 37.037 9.51 2.72 35.96 3.01
2517 3406 8.421784 TGTCTGACTTCTGACAAAAAGTATACT 58.578 33.333 14.52 0.00 46.80 2.12
2519 3408 7.808381 TCTGACTTCTGACAAAAAGTATACTCG 59.192 37.037 5.70 0.00 35.90 4.18
2520 3409 6.866770 TGACTTCTGACAAAAAGTATACTCGG 59.133 38.462 5.70 0.00 35.90 4.63
2528 3417 7.068692 ACAAAAAGTATACTCGGTGCATTAC 57.931 36.000 5.70 0.00 0.00 1.89
2529 3418 5.961395 AAAAGTATACTCGGTGCATTACG 57.039 39.130 5.70 0.00 0.00 3.18
2542 3431 1.612463 GCATTACGACGGAGGGAGTAT 59.388 52.381 0.00 0.00 0.00 2.12
2557 3446 8.774586 CGGAGGGAGTATGAAATAGTTAAAATG 58.225 37.037 0.00 0.00 31.17 2.32
2598 3487 8.672815 TCGATATTTCAAAGACAACATATGCAA 58.327 29.630 1.58 0.00 0.00 4.08
2633 3933 9.591792 AAGGAAAGAAAGAAAAAGAAGATTGTG 57.408 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.129326 GTACTACGCATCGGCACATC 58.871 55.000 0.00 0.00 41.24 3.06
8 9 0.101759 TTCTGCCCGTACTACGCATC 59.898 55.000 2.87 0.00 40.91 3.91
10 11 1.509463 CTTCTGCCCGTACTACGCA 59.491 57.895 2.87 0.00 40.91 5.24
11 12 1.877165 GCTTCTGCCCGTACTACGC 60.877 63.158 2.87 0.00 40.91 4.42
12 13 0.525668 CAGCTTCTGCCCGTACTACG 60.526 60.000 1.32 1.32 40.80 3.51
13 14 0.179108 CCAGCTTCTGCCCGTACTAC 60.179 60.000 0.00 0.00 40.80 2.73
14 15 0.323999 TCCAGCTTCTGCCCGTACTA 60.324 55.000 0.00 0.00 40.80 1.82
15 16 0.978146 ATCCAGCTTCTGCCCGTACT 60.978 55.000 0.00 0.00 40.80 2.73
16 17 0.530870 GATCCAGCTTCTGCCCGTAC 60.531 60.000 0.00 0.00 40.80 3.67
18 19 2.293318 TGATCCAGCTTCTGCCCGT 61.293 57.895 0.00 0.00 40.80 5.28
19 20 1.817099 GTGATCCAGCTTCTGCCCG 60.817 63.158 0.00 0.00 40.80 6.13
20 21 1.817099 CGTGATCCAGCTTCTGCCC 60.817 63.158 0.00 0.00 40.80 5.36
21 22 1.817099 CCGTGATCCAGCTTCTGCC 60.817 63.158 0.00 0.00 40.80 4.85
23 24 0.534412 AGTCCGTGATCCAGCTTCTG 59.466 55.000 0.00 0.00 0.00 3.02
24 25 0.534412 CAGTCCGTGATCCAGCTTCT 59.466 55.000 0.00 0.00 0.00 2.85
25 26 1.086634 GCAGTCCGTGATCCAGCTTC 61.087 60.000 0.00 0.00 0.00 3.86
26 27 1.078848 GCAGTCCGTGATCCAGCTT 60.079 57.895 0.00 0.00 0.00 3.74
28 29 2.512515 GGCAGTCCGTGATCCAGC 60.513 66.667 0.00 0.00 0.00 4.85
29 30 1.153489 CTGGCAGTCCGTGATCCAG 60.153 63.158 6.28 0.00 38.41 3.86
30 31 1.191489 TTCTGGCAGTCCGTGATCCA 61.191 55.000 15.27 0.00 34.14 3.41
31 32 0.741221 GTTCTGGCAGTCCGTGATCC 60.741 60.000 15.27 0.00 34.14 3.36
32 33 0.247736 AGTTCTGGCAGTCCGTGATC 59.752 55.000 15.27 0.00 34.14 2.92
34 35 1.367471 CAGTTCTGGCAGTCCGTGA 59.633 57.895 15.27 0.00 34.14 4.35
35 36 1.669115 CCAGTTCTGGCAGTCCGTG 60.669 63.158 15.27 8.00 34.14 4.94
36 37 2.743718 CCAGTTCTGGCAGTCCGT 59.256 61.111 15.27 0.00 34.14 4.69
37 38 1.903877 ATCCCAGTTCTGGCAGTCCG 61.904 60.000 15.27 1.86 34.14 4.79
38 39 0.107459 GATCCCAGTTCTGGCAGTCC 60.107 60.000 15.27 6.23 0.00 3.85
39 40 0.107459 GGATCCCAGTTCTGGCAGTC 60.107 60.000 15.27 9.19 0.00 3.51
40 41 0.842030 TGGATCCCAGTTCTGGCAGT 60.842 55.000 15.27 0.00 0.00 4.40
41 42 0.393537 GTGGATCCCAGTTCTGGCAG 60.394 60.000 9.90 8.58 32.34 4.85
42 43 1.685224 GTGGATCCCAGTTCTGGCA 59.315 57.895 9.90 0.00 32.34 4.92
43 44 1.077429 GGTGGATCCCAGTTCTGGC 60.077 63.158 9.90 0.99 32.34 4.85
53 54 1.153509 CCAACGTACGGGTGGATCC 60.154 63.158 27.32 4.20 0.00 3.36
54 55 1.812507 GCCAACGTACGGGTGGATC 60.813 63.158 32.50 18.28 0.00 3.36
55 56 2.114488 TTGCCAACGTACGGGTGGAT 62.114 55.000 32.50 6.24 0.00 3.41
56 57 2.321263 TTTGCCAACGTACGGGTGGA 62.321 55.000 32.50 19.72 0.00 4.02
57 58 1.445716 TTTTGCCAACGTACGGGTGG 61.446 55.000 27.11 27.11 0.00 4.61
58 59 0.040781 CTTTTGCCAACGTACGGGTG 60.041 55.000 21.06 16.33 0.00 4.61
60 61 1.577421 CCTTTTGCCAACGTACGGG 59.423 57.895 21.06 13.14 0.00 5.28
61 62 1.081708 GCCTTTTGCCAACGTACGG 60.082 57.895 21.06 2.64 0.00 4.02
62 63 0.029567 TTGCCTTTTGCCAACGTACG 59.970 50.000 15.01 15.01 40.16 3.67
63 64 1.335496 TCTTGCCTTTTGCCAACGTAC 59.665 47.619 0.00 0.00 40.16 3.67
65 66 0.385390 CTCTTGCCTTTTGCCAACGT 59.615 50.000 0.00 0.00 40.16 3.99
66 67 0.318955 CCTCTTGCCTTTTGCCAACG 60.319 55.000 0.00 0.00 40.16 4.10
69 70 0.752054 CAACCTCTTGCCTTTTGCCA 59.248 50.000 0.00 0.00 40.16 4.92
70 71 0.033920 CCAACCTCTTGCCTTTTGCC 59.966 55.000 0.00 0.00 40.16 4.52
71 72 0.601046 GCCAACCTCTTGCCTTTTGC 60.601 55.000 0.00 0.00 41.77 3.68
73 74 0.398381 TGGCCAACCTCTTGCCTTTT 60.398 50.000 0.61 0.00 36.63 2.27
74 75 1.115326 GTGGCCAACCTCTTGCCTTT 61.115 55.000 7.24 0.00 36.63 3.11
75 76 1.531602 GTGGCCAACCTCTTGCCTT 60.532 57.895 7.24 0.00 36.63 4.35
76 77 2.116125 GTGGCCAACCTCTTGCCT 59.884 61.111 7.24 0.00 36.63 4.75
77 78 3.365265 CGTGGCCAACCTCTTGCC 61.365 66.667 7.24 0.00 36.63 4.52
79 80 1.672356 CTCCGTGGCCAACCTCTTG 60.672 63.158 7.24 0.00 36.63 3.02
80 81 2.750350 CTCCGTGGCCAACCTCTT 59.250 61.111 7.24 0.00 36.63 2.85
81 82 2.741878 TACCTCCGTGGCCAACCTCT 62.742 60.000 7.24 0.00 40.22 3.69
82 83 2.288025 TACCTCCGTGGCCAACCTC 61.288 63.158 7.24 0.00 40.22 3.85
84 85 2.046604 GTACCTCCGTGGCCAACC 60.047 66.667 7.24 0.00 40.22 3.77
85 86 0.609662 TAAGTACCTCCGTGGCCAAC 59.390 55.000 7.24 0.00 40.22 3.77
86 87 1.575419 ATAAGTACCTCCGTGGCCAA 58.425 50.000 7.24 0.00 40.22 4.52
88 89 2.544486 CGTAATAAGTACCTCCGTGGCC 60.544 54.545 0.00 0.00 40.22 5.36
89 90 2.544486 CCGTAATAAGTACCTCCGTGGC 60.544 54.545 0.00 0.00 40.22 5.01
90 91 2.951642 TCCGTAATAAGTACCTCCGTGG 59.048 50.000 0.00 0.00 42.93 4.94
91 92 4.276678 TCATCCGTAATAAGTACCTCCGTG 59.723 45.833 0.00 0.00 0.00 4.94
92 93 4.464008 TCATCCGTAATAAGTACCTCCGT 58.536 43.478 0.00 0.00 0.00 4.69
93 94 5.399858 CATCATCCGTAATAAGTACCTCCG 58.600 45.833 0.00 0.00 0.00 4.63
96 97 5.836898 TCACCATCATCCGTAATAAGTACCT 59.163 40.000 0.00 0.00 0.00 3.08
97 98 6.092955 TCACCATCATCCGTAATAAGTACC 57.907 41.667 0.00 0.00 0.00 3.34
99 100 5.279306 GGCTCACCATCATCCGTAATAAGTA 60.279 44.000 0.00 0.00 35.26 2.24
100 101 4.503296 GGCTCACCATCATCCGTAATAAGT 60.503 45.833 0.00 0.00 35.26 2.24
101 102 3.997021 GGCTCACCATCATCCGTAATAAG 59.003 47.826 0.00 0.00 35.26 1.73
103 104 2.969262 TGGCTCACCATCATCCGTAATA 59.031 45.455 0.00 0.00 42.67 0.98
104 105 1.768275 TGGCTCACCATCATCCGTAAT 59.232 47.619 0.00 0.00 42.67 1.89
106 107 2.909140 TGGCTCACCATCATCCGTA 58.091 52.632 0.00 0.00 42.67 4.02
107 108 3.726004 TGGCTCACCATCATCCGT 58.274 55.556 0.00 0.00 42.67 4.69
123 124 3.728305 ATGGGGAGGGAGGCCTCTG 62.728 68.421 31.36 0.00 37.05 3.35
124 125 2.978674 AATGGGGAGGGAGGCCTCT 61.979 63.158 31.36 13.94 37.05 3.69
125 126 2.368878 AATGGGGAGGGAGGCCTC 60.369 66.667 25.59 25.59 36.20 4.70
127 128 3.825623 CCAATGGGGAGGGAGGCC 61.826 72.222 0.00 0.00 40.01 5.19
129 130 1.953100 ATTGCCAATGGGGAGGGAGG 61.953 60.000 0.00 0.00 40.01 4.30
130 131 0.852842 TATTGCCAATGGGGAGGGAG 59.147 55.000 0.00 0.00 40.01 4.30
132 133 0.823356 CGTATTGCCAATGGGGAGGG 60.823 60.000 0.00 0.00 40.01 4.30
133 134 1.455383 GCGTATTGCCAATGGGGAGG 61.455 60.000 0.00 0.00 40.01 4.30
134 135 2.032981 GCGTATTGCCAATGGGGAG 58.967 57.895 0.00 0.00 40.01 4.30
144 145 0.248054 CGATGGTTGTGGCGTATTGC 60.248 55.000 0.00 0.00 45.38 3.56
145 146 0.376852 CCGATGGTTGTGGCGTATTG 59.623 55.000 0.00 0.00 0.00 1.90
146 147 0.746563 CCCGATGGTTGTGGCGTATT 60.747 55.000 0.00 0.00 0.00 1.89
147 148 1.153249 CCCGATGGTTGTGGCGTAT 60.153 57.895 0.00 0.00 0.00 3.06
158 159 3.866582 GCCCTCCTGACCCGATGG 61.867 72.222 0.00 0.00 37.80 3.51
159 160 1.987807 ATTGCCCTCCTGACCCGATG 61.988 60.000 0.00 0.00 0.00 3.84
160 161 1.694169 ATTGCCCTCCTGACCCGAT 60.694 57.895 0.00 0.00 0.00 4.18
161 162 2.285368 ATTGCCCTCCTGACCCGA 60.285 61.111 0.00 0.00 0.00 5.14
162 163 2.124570 CATTGCCCTCCTGACCCG 60.125 66.667 0.00 0.00 0.00 5.28
163 164 0.681243 GAACATTGCCCTCCTGACCC 60.681 60.000 0.00 0.00 0.00 4.46
164 165 0.038166 TGAACATTGCCCTCCTGACC 59.962 55.000 0.00 0.00 0.00 4.02
165 166 1.747355 CATGAACATTGCCCTCCTGAC 59.253 52.381 0.00 0.00 0.00 3.51
167 168 0.458669 GCATGAACATTGCCCTCCTG 59.541 55.000 0.00 0.00 0.00 3.86
169 170 1.315257 ACGCATGAACATTGCCCTCC 61.315 55.000 0.00 0.00 0.00 4.30
171 172 1.647545 CGACGCATGAACATTGCCCT 61.648 55.000 0.00 0.00 0.00 5.19
172 173 1.226379 CGACGCATGAACATTGCCC 60.226 57.895 0.00 0.00 0.00 5.36
173 174 1.226379 CCGACGCATGAACATTGCC 60.226 57.895 0.00 0.00 0.00 4.52
174 175 1.226379 CCCGACGCATGAACATTGC 60.226 57.895 0.00 0.00 0.00 3.56
177 178 0.177836 TCATCCCGACGCATGAACAT 59.822 50.000 0.00 0.00 0.00 2.71
178 179 0.739462 GTCATCCCGACGCATGAACA 60.739 55.000 8.75 0.00 34.19 3.18
179 180 2.006772 GTCATCCCGACGCATGAAC 58.993 57.895 8.75 2.33 34.19 3.18
180 181 4.513519 GTCATCCCGACGCATGAA 57.486 55.556 8.75 0.00 34.19 2.57
191 192 0.179006 GCCTTGGGATCCTGTCATCC 60.179 60.000 12.58 0.00 41.74 3.51
192 193 0.179006 GGCCTTGGGATCCTGTCATC 60.179 60.000 12.58 0.00 0.00 2.92
195 196 1.077429 GTGGCCTTGGGATCCTGTC 60.077 63.158 12.58 0.22 0.00 3.51
196 197 2.616458 GGTGGCCTTGGGATCCTGT 61.616 63.158 12.58 0.00 0.00 4.00
197 198 2.276740 GGTGGCCTTGGGATCCTG 59.723 66.667 12.58 2.38 0.00 3.86
199 200 3.023735 AGGGTGGCCTTGGGATCC 61.024 66.667 3.32 1.92 0.00 3.36
200 201 2.276740 CAGGGTGGCCTTGGGATC 59.723 66.667 3.32 0.00 0.00 3.36
201 202 3.350163 CCAGGGTGGCCTTGGGAT 61.350 66.667 3.32 0.00 45.61 3.85
205 206 1.153756 AAAGACCAGGGTGGCCTTG 59.846 57.895 3.32 0.00 39.40 3.61
206 207 1.153756 CAAAGACCAGGGTGGCCTT 59.846 57.895 3.32 0.00 42.24 4.35
207 208 2.845345 CCAAAGACCAGGGTGGCCT 61.845 63.158 3.32 0.00 42.67 5.19
208 209 2.283173 CCAAAGACCAGGGTGGCC 60.283 66.667 0.00 0.00 42.67 5.36
209 210 2.283173 CCCAAAGACCAGGGTGGC 60.283 66.667 0.00 0.00 42.67 5.01
214 215 1.118838 TTGCAAACCCAAAGACCAGG 58.881 50.000 0.00 0.00 0.00 4.45
215 216 2.977772 TTTGCAAACCCAAAGACCAG 57.022 45.000 8.05 0.00 31.55 4.00
216 217 2.503356 ACATTTGCAAACCCAAAGACCA 59.497 40.909 15.41 0.00 38.03 4.02
217 218 3.130633 GACATTTGCAAACCCAAAGACC 58.869 45.455 15.41 0.00 38.03 3.85
218 219 2.794350 CGACATTTGCAAACCCAAAGAC 59.206 45.455 15.41 0.81 38.03 3.01
220 221 2.134346 CCGACATTTGCAAACCCAAAG 58.866 47.619 15.41 4.28 38.03 2.77
221 222 1.202580 CCCGACATTTGCAAACCCAAA 60.203 47.619 15.41 0.00 38.87 3.28
222 223 0.390860 CCCGACATTTGCAAACCCAA 59.609 50.000 15.41 0.00 0.00 4.12
224 225 1.374125 GCCCGACATTTGCAAACCC 60.374 57.895 15.41 5.66 0.00 4.11
225 226 1.374125 GGCCCGACATTTGCAAACC 60.374 57.895 15.41 5.46 0.00 3.27
226 227 0.667184 CTGGCCCGACATTTGCAAAC 60.667 55.000 15.41 0.65 0.00 2.93
228 229 2.929903 GCTGGCCCGACATTTGCAA 61.930 57.895 0.00 0.00 0.00 4.08
229 230 3.372730 GCTGGCCCGACATTTGCA 61.373 61.111 0.00 0.00 0.00 4.08
230 231 3.056313 GAGCTGGCCCGACATTTGC 62.056 63.158 0.00 0.00 0.00 3.68
231 232 1.675310 TGAGCTGGCCCGACATTTG 60.675 57.895 0.00 0.00 0.00 2.32
233 234 2.045926 GTGAGCTGGCCCGACATT 60.046 61.111 0.00 0.00 0.00 2.71
234 235 4.101448 GGTGAGCTGGCCCGACAT 62.101 66.667 0.00 0.00 0.00 3.06
236 237 2.044806 ATATGGTGAGCTGGCCCGAC 62.045 60.000 0.00 0.00 0.00 4.79
237 238 1.766059 ATATGGTGAGCTGGCCCGA 60.766 57.895 0.00 0.00 0.00 5.14
238 239 1.598962 CATATGGTGAGCTGGCCCG 60.599 63.158 0.00 0.00 0.00 6.13
239 240 1.228367 CCATATGGTGAGCTGGCCC 60.228 63.158 14.09 0.00 0.00 5.80
240 241 4.488790 CCATATGGTGAGCTGGCC 57.511 61.111 14.09 0.00 0.00 5.36
250 251 3.804325 CGACAAGCAGAAGTACCATATGG 59.196 47.826 20.68 20.68 42.17 2.74
266 267 2.743928 GCTGGTGAGGGCGACAAG 60.744 66.667 0.00 0.00 0.00 3.16
267 268 4.329545 GGCTGGTGAGGGCGACAA 62.330 66.667 0.00 0.00 0.00 3.18
275 276 1.376037 GTTCTTCCGGGCTGGTGAG 60.376 63.158 13.14 11.78 39.52 3.51
276 277 2.747686 GTTCTTCCGGGCTGGTGA 59.252 61.111 13.14 9.37 39.52 4.02
278 279 2.529389 AGGTTCTTCCGGGCTGGT 60.529 61.111 13.14 0.00 41.99 4.00
279 280 2.269241 GAGGTTCTTCCGGGCTGG 59.731 66.667 5.83 5.83 41.99 4.85
280 281 2.125512 CGAGGTTCTTCCGGGCTG 60.126 66.667 0.00 0.00 41.99 4.85
281 282 2.283676 TCGAGGTTCTTCCGGGCT 60.284 61.111 0.00 0.00 41.99 5.19
282 283 2.125633 GTCGAGGTTCTTCCGGGC 60.126 66.667 0.00 0.00 41.99 6.13
283 284 1.215647 CAGTCGAGGTTCTTCCGGG 59.784 63.158 0.00 0.00 41.99 5.73
284 285 1.215647 CCAGTCGAGGTTCTTCCGG 59.784 63.158 0.00 0.00 41.99 5.14
285 286 1.171308 TACCAGTCGAGGTTCTTCCG 58.829 55.000 1.16 0.00 43.08 4.30
286 287 3.889520 AATACCAGTCGAGGTTCTTCC 57.110 47.619 1.16 0.00 43.08 3.46
287 288 3.933332 CCAAATACCAGTCGAGGTTCTTC 59.067 47.826 1.16 0.00 43.08 2.87
289 290 2.354805 GCCAAATACCAGTCGAGGTTCT 60.355 50.000 1.16 0.00 43.08 3.01
290 291 2.007608 GCCAAATACCAGTCGAGGTTC 58.992 52.381 1.16 0.00 43.08 3.62
291 292 1.339727 GGCCAAATACCAGTCGAGGTT 60.340 52.381 0.00 0.00 43.08 3.50
293 294 0.251916 TGGCCAAATACCAGTCGAGG 59.748 55.000 0.61 0.00 32.06 4.63
294 295 1.369625 GTGGCCAAATACCAGTCGAG 58.630 55.000 7.24 0.00 38.04 4.04
295 296 0.035820 GGTGGCCAAATACCAGTCGA 60.036 55.000 7.24 0.00 38.04 4.20
296 297 0.035439 AGGTGGCCAAATACCAGTCG 60.035 55.000 7.24 0.00 38.04 4.18
297 298 1.682087 GGAGGTGGCCAAATACCAGTC 60.682 57.143 7.24 0.00 38.04 3.51
298 299 0.331616 GGAGGTGGCCAAATACCAGT 59.668 55.000 7.24 0.00 38.04 4.00
299 300 0.625849 AGGAGGTGGCCAAATACCAG 59.374 55.000 7.24 0.00 38.04 4.00
304 305 0.032813 CCATCAGGAGGTGGCCAAAT 60.033 55.000 7.24 0.00 36.89 2.32
306 307 1.541118 TCCATCAGGAGGTGGCCAA 60.541 57.895 7.24 0.00 39.61 4.52
307 308 2.124768 TCCATCAGGAGGTGGCCA 59.875 61.111 0.00 0.00 39.61 5.36
327 328 1.255667 TAAGTGGACGCCTGGGAGAC 61.256 60.000 0.00 0.00 0.00 3.36
329 330 1.218316 GTAAGTGGACGCCTGGGAG 59.782 63.158 0.00 0.00 0.00 4.30
330 331 1.122632 TTGTAAGTGGACGCCTGGGA 61.123 55.000 0.00 0.00 0.00 4.37
331 332 0.250553 TTTGTAAGTGGACGCCTGGG 60.251 55.000 0.00 0.00 0.00 4.45
472 474 4.398988 ACAGATTCACACAGCTTTGTTCAA 59.601 37.500 1.88 0.00 0.00 2.69
559 562 0.317160 ACGTCCAAGCGATGAAGACA 59.683 50.000 0.00 0.00 35.59 3.41
1048 1062 1.152860 ACATGTTGCCGTTGGTGGA 60.153 52.632 0.00 0.00 0.00 4.02
1739 1756 6.937436 TCAAGTTAGTGCTAGATACATCGA 57.063 37.500 0.00 0.00 0.00 3.59
1743 1760 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29
1752 1769 6.539826 TGGATGTATCAAGCATCAAGTTAGTG 59.460 38.462 7.46 0.00 43.17 2.74
1753 1770 6.653020 TGGATGTATCAAGCATCAAGTTAGT 58.347 36.000 7.46 0.00 43.17 2.24
1754 1771 7.741027 ATGGATGTATCAAGCATCAAGTTAG 57.259 36.000 7.46 0.00 43.17 2.34
1755 1772 8.407832 CAAATGGATGTATCAAGCATCAAGTTA 58.592 33.333 7.46 0.00 43.17 2.24
1756 1773 7.123098 TCAAATGGATGTATCAAGCATCAAGTT 59.877 33.333 7.46 0.00 43.17 2.66
1757 1774 6.604396 TCAAATGGATGTATCAAGCATCAAGT 59.396 34.615 7.46 0.00 43.17 3.16
1759 1776 6.040054 CCTCAAATGGATGTATCAAGCATCAA 59.960 38.462 7.46 0.00 43.17 2.57
1760 1777 5.533528 CCTCAAATGGATGTATCAAGCATCA 59.466 40.000 7.46 0.00 43.17 3.07
1761 1778 5.048224 CCCTCAAATGGATGTATCAAGCATC 60.048 44.000 0.00 0.00 41.30 3.91
1762 1779 4.831155 CCCTCAAATGGATGTATCAAGCAT 59.169 41.667 0.00 0.00 0.00 3.79
1763 1780 4.079844 TCCCTCAAATGGATGTATCAAGCA 60.080 41.667 0.00 0.00 0.00 3.91
1764 1781 4.276926 GTCCCTCAAATGGATGTATCAAGC 59.723 45.833 0.00 0.00 33.65 4.01
1765 1782 5.439721 TGTCCCTCAAATGGATGTATCAAG 58.560 41.667 0.00 0.00 33.65 3.02
1768 1785 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1770 1787 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
1772 1789 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1773 1790 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
1774 1791 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
1775 1792 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
1776 1793 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
1777 1794 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
1778 1795 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
1779 1796 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
1780 1797 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
1781 1798 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
1782 1799 0.250770 GTCCGGAAAAGCTTGTCCCT 60.251 55.000 26.94 0.00 0.00 4.20
1783 1800 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
1784 1801 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
1785 1802 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
1790 1807 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
1791 1808 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
1792 1809 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
1793 1810 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1794 1811 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
1796 1813 1.455217 ACATACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
1797 1814 1.734137 CACATACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
1798 1815 1.043673 AGCACATACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
1799 1816 1.609555 CTAGCACATACTCCCTCCGTC 59.390 57.143 0.00 0.00 0.00 4.79
1800 1817 1.693627 CTAGCACATACTCCCTCCGT 58.306 55.000 0.00 0.00 0.00 4.69
1801 1818 0.315568 GCTAGCACATACTCCCTCCG 59.684 60.000 10.63 0.00 0.00 4.63
1802 1819 1.710816 AGCTAGCACATACTCCCTCC 58.289 55.000 18.83 0.00 0.00 4.30
1803 1820 3.828875 AAAGCTAGCACATACTCCCTC 57.171 47.619 18.83 0.00 0.00 4.30
1804 1821 5.896073 AATAAAGCTAGCACATACTCCCT 57.104 39.130 18.83 0.00 0.00 4.20
1805 1822 6.017852 GTCAAATAAAGCTAGCACATACTCCC 60.018 42.308 18.83 0.00 0.00 4.30
1806 1823 6.763610 AGTCAAATAAAGCTAGCACATACTCC 59.236 38.462 18.83 0.00 0.00 3.85
1807 1824 7.778470 AGTCAAATAAAGCTAGCACATACTC 57.222 36.000 18.83 0.00 0.00 2.59
1865 2747 5.481473 ACGGAGGGAGTACTAAACAATTACA 59.519 40.000 0.00 0.00 0.00 2.41
1981 2863 4.662468 AGAACATCGTGTGCATCTCTAT 57.338 40.909 0.00 0.00 0.00 1.98
1986 2868 4.031028 GCAATTAGAACATCGTGTGCATC 58.969 43.478 0.00 0.00 0.00 3.91
2046 2928 2.639065 GGTGATTGCAACGGGAGATAA 58.361 47.619 0.00 0.00 0.00 1.75
2062 2944 2.191908 GCACATATGCCCGGGTGA 59.808 61.111 24.63 9.94 46.97 4.02
2084 2966 7.393841 TTCATCATTATGTGCATTGTCTTCA 57.606 32.000 0.00 0.00 34.50 3.02
2085 2967 7.756272 TGTTTCATCATTATGTGCATTGTCTTC 59.244 33.333 0.00 0.00 34.50 2.87
2086 2968 7.543172 GTGTTTCATCATTATGTGCATTGTCTT 59.457 33.333 0.00 0.00 34.50 3.01
2087 2969 7.031372 GTGTTTCATCATTATGTGCATTGTCT 58.969 34.615 0.00 0.00 34.50 3.41
2088 2970 6.021232 CGTGTTTCATCATTATGTGCATTGTC 60.021 38.462 0.00 0.00 34.50 3.18
2089 2971 5.801444 CGTGTTTCATCATTATGTGCATTGT 59.199 36.000 0.00 0.00 34.50 2.71
2090 2972 5.801444 ACGTGTTTCATCATTATGTGCATTG 59.199 36.000 0.00 0.00 34.50 2.82
2091 2973 5.953183 ACGTGTTTCATCATTATGTGCATT 58.047 33.333 0.00 0.00 34.50 3.56
2092 2974 5.565592 ACGTGTTTCATCATTATGTGCAT 57.434 34.783 0.00 0.00 34.50 3.96
2093 2975 5.369685 AACGTGTTTCATCATTATGTGCA 57.630 34.783 0.00 0.00 34.50 4.57
2094 2976 4.491942 CGAACGTGTTTCATCATTATGTGC 59.508 41.667 0.00 0.00 33.24 4.57
2095 2977 5.021389 CCGAACGTGTTTCATCATTATGTG 58.979 41.667 0.00 0.00 33.24 3.21
2096 2978 4.932799 TCCGAACGTGTTTCATCATTATGT 59.067 37.500 0.00 0.00 33.24 2.29
2097 2979 5.255596 GTCCGAACGTGTTTCATCATTATG 58.744 41.667 0.00 0.00 33.24 1.90
2098 2980 4.331717 GGTCCGAACGTGTTTCATCATTAT 59.668 41.667 0.00 0.00 33.24 1.28
2099 2981 3.680937 GGTCCGAACGTGTTTCATCATTA 59.319 43.478 0.00 0.00 33.24 1.90
2100 2982 2.482721 GGTCCGAACGTGTTTCATCATT 59.517 45.455 0.00 0.00 33.24 2.57
2101 2983 2.073816 GGTCCGAACGTGTTTCATCAT 58.926 47.619 0.00 0.00 33.24 2.45
2102 2984 1.202545 TGGTCCGAACGTGTTTCATCA 60.203 47.619 0.00 0.00 33.24 3.07
2103 2985 1.193874 GTGGTCCGAACGTGTTTCATC 59.806 52.381 0.00 0.00 33.24 2.92
2104 2986 1.223187 GTGGTCCGAACGTGTTTCAT 58.777 50.000 0.00 0.00 33.24 2.57
2105 2987 1.146957 CGTGGTCCGAACGTGTTTCA 61.147 55.000 0.00 0.00 39.56 2.69
2106 2988 1.561250 CGTGGTCCGAACGTGTTTC 59.439 57.895 0.00 0.00 39.56 2.78
2107 2989 3.708741 CGTGGTCCGAACGTGTTT 58.291 55.556 0.00 0.00 39.56 2.83
2112 2994 2.365823 CCATTACGTGGTCCGAACG 58.634 57.895 0.00 0.38 43.44 3.95
2121 3003 3.500299 TGGATGTGTTTCACCATTACGTG 59.500 43.478 0.00 0.00 32.73 4.49
2122 3004 3.745799 TGGATGTGTTTCACCATTACGT 58.254 40.909 0.00 0.00 32.73 3.57
2123 3005 4.000325 TCTGGATGTGTTTCACCATTACG 59.000 43.478 0.00 0.00 32.73 3.18
2124 3006 4.142600 GCTCTGGATGTGTTTCACCATTAC 60.143 45.833 0.00 0.00 32.73 1.89
2125 3007 4.009675 GCTCTGGATGTGTTTCACCATTA 58.990 43.478 0.00 0.00 32.73 1.90
2126 3008 2.821969 GCTCTGGATGTGTTTCACCATT 59.178 45.455 0.00 0.00 32.73 3.16
2127 3009 2.440409 GCTCTGGATGTGTTTCACCAT 58.560 47.619 0.00 0.00 32.73 3.55
2128 3010 1.877680 CGCTCTGGATGTGTTTCACCA 60.878 52.381 0.00 0.00 32.73 4.17
2129 3011 0.798776 CGCTCTGGATGTGTTTCACC 59.201 55.000 0.00 0.00 32.73 4.02
2130 3012 0.166814 GCGCTCTGGATGTGTTTCAC 59.833 55.000 0.00 0.00 34.56 3.18
2131 3013 1.291184 CGCGCTCTGGATGTGTTTCA 61.291 55.000 5.56 0.00 0.00 2.69
2132 3014 1.421485 CGCGCTCTGGATGTGTTTC 59.579 57.895 5.56 0.00 0.00 2.78
2133 3015 2.680913 GCGCGCTCTGGATGTGTTT 61.681 57.895 26.67 0.00 0.00 2.83
2134 3016 3.121030 GCGCGCTCTGGATGTGTT 61.121 61.111 26.67 0.00 0.00 3.32
2135 3017 3.670637 ATGCGCGCTCTGGATGTGT 62.671 57.895 33.29 2.17 0.00 3.72
2136 3018 2.893895 ATGCGCGCTCTGGATGTG 60.894 61.111 33.29 0.00 0.00 3.21
2137 3019 2.893895 CATGCGCGCTCTGGATGT 60.894 61.111 33.29 4.88 31.36 3.06
2138 3020 4.309347 GCATGCGCGCTCTGGATG 62.309 66.667 33.29 25.99 38.10 3.51
2149 3031 4.303603 CAAGCCGGATCGCATGCG 62.304 66.667 33.61 33.61 44.12 4.73
2150 3032 2.890109 CTCAAGCCGGATCGCATGC 61.890 63.158 5.05 7.91 0.00 4.06
2151 3033 1.522355 ACTCAAGCCGGATCGCATG 60.522 57.895 5.05 0.00 0.00 4.06
2152 3034 1.522355 CACTCAAGCCGGATCGCAT 60.522 57.895 5.05 0.00 0.00 4.73
2153 3035 2.125552 CACTCAAGCCGGATCGCA 60.126 61.111 5.05 0.00 0.00 5.10
2154 3036 2.125512 ACACTCAAGCCGGATCGC 60.126 61.111 5.05 0.00 0.00 4.58
2155 3037 0.738975 TAGACACTCAAGCCGGATCG 59.261 55.000 5.05 0.00 0.00 3.69
2156 3038 3.460857 AATAGACACTCAAGCCGGATC 57.539 47.619 5.05 0.00 0.00 3.36
2157 3039 3.452627 AGAAATAGACACTCAAGCCGGAT 59.547 43.478 5.05 0.00 0.00 4.18
2158 3040 2.832129 AGAAATAGACACTCAAGCCGGA 59.168 45.455 5.05 0.00 0.00 5.14
2159 3041 3.252974 AGAAATAGACACTCAAGCCGG 57.747 47.619 0.00 0.00 0.00 6.13
2160 3042 4.268884 GCTTAGAAATAGACACTCAAGCCG 59.731 45.833 0.00 0.00 32.88 5.52
2161 3043 5.178797 TGCTTAGAAATAGACACTCAAGCC 58.821 41.667 0.00 0.00 37.05 4.35
2162 3044 6.727824 TTGCTTAGAAATAGACACTCAAGC 57.272 37.500 0.00 0.00 38.07 4.01
2164 3046 9.719355 TGTTATTGCTTAGAAATAGACACTCAA 57.281 29.630 0.00 0.00 0.00 3.02
2165 3047 9.719355 TTGTTATTGCTTAGAAATAGACACTCA 57.281 29.630 7.17 0.00 0.00 3.41
2180 3062 9.899226 GAACTCAAGAAGTATTTGTTATTGCTT 57.101 29.630 0.00 0.00 37.17 3.91
2181 3063 9.289782 AGAACTCAAGAAGTATTTGTTATTGCT 57.710 29.630 0.00 0.00 37.17 3.91
2199 3081 9.952030 TCCAACACATTACATTATAGAACTCAA 57.048 29.630 0.00 0.00 0.00 3.02
2210 3092 9.829507 TTTTCAGAAAATCCAACACATTACATT 57.170 25.926 4.06 0.00 0.00 2.71
2211 3093 9.829507 TTTTTCAGAAAATCCAACACATTACAT 57.170 25.926 9.19 0.00 30.07 2.29
2212 3094 9.829507 ATTTTTCAGAAAATCCAACACATTACA 57.170 25.926 9.19 0.00 40.54 2.41
2349 3231 8.841822 CGTAAATTTTACGTTGCATATGTTTGA 58.158 29.630 26.01 0.00 36.31 2.69
2350 3232 8.987150 CGTAAATTTTACGTTGCATATGTTTG 57.013 30.769 26.01 1.53 36.31 2.93
2367 3249 9.383519 ACTGAAGATACATCATCACGTAAATTT 57.616 29.630 0.00 0.00 35.96 1.82
2368 3250 8.820933 CACTGAAGATACATCATCACGTAAATT 58.179 33.333 0.00 0.00 35.96 1.82
2369 3251 8.197439 TCACTGAAGATACATCATCACGTAAAT 58.803 33.333 0.00 0.00 35.96 1.40
2375 3257 6.088749 GCGTATCACTGAAGATACATCATCAC 59.911 42.308 17.98 0.00 46.81 3.06
2416 3298 6.525280 GCAAATGCATATCTTTTTGGCAAAAG 59.475 34.615 23.03 17.30 43.96 2.27
2418 3300 5.706369 AGCAAATGCATATCTTTTTGGCAAA 59.294 32.000 8.93 8.93 45.16 3.68
2419 3301 5.247084 AGCAAATGCATATCTTTTTGGCAA 58.753 33.333 8.28 0.00 45.16 4.52
2420 3302 4.834534 AGCAAATGCATATCTTTTTGGCA 58.165 34.783 8.28 0.00 45.16 4.92
2421 3303 7.486802 AATAGCAAATGCATATCTTTTTGGC 57.513 32.000 8.28 0.00 45.16 4.52
2487 3375 6.758886 ACTTTTTGTCAGAAGTCAGACACTAG 59.241 38.462 6.08 6.73 41.14 2.57
2492 3380 8.819643 AGTATACTTTTTGTCAGAAGTCAGAC 57.180 34.615 0.00 0.00 37.32 3.51
2495 3383 6.866770 CCGAGTATACTTTTTGTCAGAAGTCA 59.133 38.462 6.88 0.00 37.32 3.41
2496 3384 6.867293 ACCGAGTATACTTTTTGTCAGAAGTC 59.133 38.462 6.88 0.00 37.32 3.01
2501 3389 4.688879 TGCACCGAGTATACTTTTTGTCAG 59.311 41.667 6.88 0.00 0.00 3.51
2517 3406 1.138036 CTCCGTCGTAATGCACCGA 59.862 57.895 0.00 0.00 0.00 4.69
2519 3408 1.520787 CCCTCCGTCGTAATGCACC 60.521 63.158 0.00 0.00 0.00 5.01
2520 3409 0.527817 CTCCCTCCGTCGTAATGCAC 60.528 60.000 0.00 0.00 0.00 4.57
2528 3417 3.568853 ACTATTTCATACTCCCTCCGTCG 59.431 47.826 0.00 0.00 0.00 5.12
2529 3418 5.532664 AACTATTTCATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.