Multiple sequence alignment - TraesCS6D01G100100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G100100 chr6D 100.000 4244 0 0 1 4244 63326460 63330703 0.000000e+00 7838.0
1 TraesCS6D01G100100 chr6D 89.691 97 8 2 1733 1829 471069846 471069940 5.760000e-24 122.0
2 TraesCS6D01G100100 chr6D 95.455 44 2 0 2523 2566 63328945 63328988 2.120000e-08 71.3
3 TraesCS6D01G100100 chr6D 95.455 44 2 0 2486 2529 63328982 63329025 2.120000e-08 71.3
4 TraesCS6D01G100100 chr6B 97.347 1696 29 4 1567 3262 136794799 136796478 0.000000e+00 2868.0
5 TraesCS6D01G100100 chr6B 92.509 1455 70 14 663 2102 136792935 136794365 0.000000e+00 2047.0
6 TraesCS6D01G100100 chr6B 89.145 433 38 5 977 1406 136794362 136794788 8.080000e-147 531.0
7 TraesCS6D01G100100 chr6B 84.868 456 31 11 3 426 102262411 102262860 3.920000e-115 425.0
8 TraesCS6D01G100100 chr6B 91.848 184 14 1 245 427 485536299 485536482 5.450000e-64 255.0
9 TraesCS6D01G100100 chr6B 90.506 158 6 4 3433 3583 136796596 136796751 2.590000e-47 200.0
10 TraesCS6D01G100100 chr6B 81.720 186 14 10 3654 3839 227090863 227090698 2.060000e-28 137.0
11 TraesCS6D01G100100 chr6B 94.521 73 4 0 3579 3651 227090978 227090906 3.470000e-21 113.0
12 TraesCS6D01G100100 chr6B 91.358 81 7 0 3358 3438 136796490 136796570 1.250000e-20 111.0
13 TraesCS6D01G100100 chr6B 96.667 60 2 0 423 482 136792459 136792518 2.700000e-17 100.0
14 TraesCS6D01G100100 chr6B 97.500 40 1 0 2486 2525 136795739 136795778 7.610000e-08 69.4
15 TraesCS6D01G100100 chr6A 90.868 1325 77 13 423 1742 80804759 80806044 0.000000e+00 1736.0
16 TraesCS6D01G100100 chr6A 95.159 661 30 2 1872 2531 80806054 80806713 0.000000e+00 1042.0
17 TraesCS6D01G100100 chr6A 90.642 716 58 7 2523 3232 80806668 80807380 0.000000e+00 942.0
18 TraesCS6D01G100100 chr6A 91.687 409 31 2 3836 4244 80807677 80808082 7.970000e-157 564.0
19 TraesCS6D01G100100 chr2B 93.103 348 23 1 1 347 425457160 425457507 3.790000e-140 508.0
20 TraesCS6D01G100100 chr2B 91.736 363 27 3 64 426 442803578 442803937 6.340000e-138 501.0
21 TraesCS6D01G100100 chr2B 96.774 93 3 0 3259 3351 79359577 79359485 5.680000e-34 156.0
22 TraesCS6D01G100100 chr2B 94.000 100 5 1 3249 3348 695582945 695583043 2.640000e-32 150.0
23 TraesCS6D01G100100 chr2B 94.828 58 3 0 3 60 442803534 442803591 1.630000e-14 91.6
24 TraesCS6D01G100100 chr1D 80.830 506 65 20 472 960 3799467 3799957 6.700000e-98 368.0
25 TraesCS6D01G100100 chr1D 80.612 490 64 19 472 944 3760654 3761129 2.430000e-92 350.0
26 TraesCS6D01G100100 chr1D 83.607 183 30 0 3657 3839 403232362 403232180 5.640000e-39 172.0
27 TraesCS6D01G100100 chr1D 81.319 182 23 6 3661 3833 288922873 288923052 2.060000e-28 137.0
28 TraesCS6D01G100100 chr1D 94.595 37 1 1 793 829 393439911 393439946 5.930000e-04 56.5
29 TraesCS6D01G100100 chr5B 91.935 186 14 1 245 429 565831443 565831258 4.210000e-65 259.0
30 TraesCS6D01G100100 chr5B 91.848 184 14 1 245 427 565904047 565903864 5.450000e-64 255.0
31 TraesCS6D01G100100 chr5B 77.445 501 49 33 464 956 588693687 588693243 1.520000e-59 241.0
32 TraesCS6D01G100100 chr5B 77.482 413 45 23 553 956 588783058 588782685 2.000000e-48 204.0
33 TraesCS6D01G100100 chr5B 94.059 101 5 1 3259 3359 257333309 257333210 7.350000e-33 152.0
34 TraesCS6D01G100100 chr5B 100.000 29 0 0 793 821 588693255 588693227 2.000000e-03 54.7
35 TraesCS6D01G100100 chr2A 91.935 186 14 1 245 429 294764924 294764739 4.210000e-65 259.0
36 TraesCS6D01G100100 chr2D 91.351 185 15 1 245 428 642014414 642014230 7.040000e-63 252.0
37 TraesCS6D01G100100 chr2D 92.453 106 7 1 3247 3351 598639120 598639015 2.640000e-32 150.0
38 TraesCS6D01G100100 chr2D 80.851 188 15 9 3648 3833 505775119 505775287 1.240000e-25 128.0
39 TraesCS6D01G100100 chr2D 87.912 91 10 1 1735 1825 530555145 530555056 5.800000e-19 106.0
40 TraesCS6D01G100100 chr2D 92.424 66 2 2 3592 3655 134120540 134120476 1.630000e-14 91.6
41 TraesCS6D01G100100 chr2D 90.141 71 2 4 3592 3659 538774731 538774799 2.100000e-13 87.9
42 TraesCS6D01G100100 chr1A 85.600 250 21 8 708 956 492200576 492200341 9.110000e-62 248.0
43 TraesCS6D01G100100 chr1A 90.110 91 8 1 1735 1825 568396072 568396161 2.680000e-22 117.0
44 TraesCS6D01G100100 chr1A 100.000 30 0 0 793 822 492200353 492200324 5.930000e-04 56.5
45 TraesCS6D01G100100 chr5A 90.270 185 16 2 245 428 177582425 177582242 1.520000e-59 241.0
46 TraesCS6D01G100100 chr5A 91.954 87 7 0 1739 1825 624795509 624795595 5.760000e-24 122.0
47 TraesCS6D01G100100 chr5A 92.424 66 2 2 3592 3655 619442003 619442067 1.630000e-14 91.6
48 TraesCS6D01G100100 chr7B 89.062 192 19 2 237 426 682740118 682739927 1.970000e-58 237.0
49 TraesCS6D01G100100 chr7B 90.000 60 6 0 3596 3655 580986560 580986501 1.270000e-10 78.7
50 TraesCS6D01G100100 chr5D 87.166 187 23 1 3654 3839 28039205 28039391 1.200000e-50 211.0
51 TraesCS6D01G100100 chr5D 87.709 179 22 0 3661 3839 507874283 507874105 4.300000e-50 209.0
52 TraesCS6D01G100100 chr5D 94.949 99 3 2 3250 3347 413056165 413056262 2.040000e-33 154.0
53 TraesCS6D01G100100 chr5D 90.909 66 3 2 3592 3655 337154927 337154863 7.560000e-13 86.1
54 TraesCS6D01G100100 chr5D 100.000 29 0 0 793 821 480496077 480496049 2.000000e-03 54.7
55 TraesCS6D01G100100 chr4A 98.876 89 1 0 3261 3349 473777262 473777174 4.390000e-35 159.0
56 TraesCS6D01G100100 chr4A 97.802 91 2 0 3259 3349 15648189 15648279 1.580000e-34 158.0
57 TraesCS6D01G100100 chr4A 96.774 93 3 0 3259 3351 744443092 744443000 5.680000e-34 156.0
58 TraesCS6D01G100100 chr4A 88.889 90 8 2 1739 1827 605425395 605425307 4.490000e-20 110.0
59 TraesCS6D01G100100 chr1B 80.000 250 20 16 708 956 529509003 529508783 1.580000e-34 158.0
60 TraesCS6D01G100100 chr1B 91.667 108 8 1 3244 3350 57136435 57136328 9.510000e-32 148.0
61 TraesCS6D01G100100 chr1B 78.212 179 38 1 3662 3839 114619918 114620096 3.470000e-21 113.0
62 TraesCS6D01G100100 chr7A 91.860 86 7 0 1740 1825 8523384 8523469 2.070000e-23 121.0
63 TraesCS6D01G100100 chr3A 87.879 99 12 0 1741 1839 621211504 621211406 2.680000e-22 117.0
64 TraesCS6D01G100100 chr3A 90.361 83 5 2 3579 3659 583742064 583741983 5.800000e-19 106.0
65 TraesCS6D01G100100 chr3A 90.909 66 3 2 3592 3655 711214546 711214482 7.560000e-13 86.1
66 TraesCS6D01G100100 chr3A 91.803 61 2 2 3592 3650 711215714 711215655 9.780000e-12 82.4
67 TraesCS6D01G100100 chr3B 87.879 99 11 1 1741 1839 637059475 637059378 9.640000e-22 115.0
68 TraesCS6D01G100100 chr7D 89.412 85 9 0 1741 1825 570639721 570639637 1.610000e-19 108.0
69 TraesCS6D01G100100 chr3D 92.105 76 6 0 3654 3729 404434151 404434076 1.610000e-19 108.0
70 TraesCS6D01G100100 chr3D 89.024 82 8 1 3647 3727 36539018 36538937 2.700000e-17 100.0
71 TraesCS6D01G100100 chr3D 88.095 84 8 2 3647 3728 566924571 566924488 9.710000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G100100 chr6D 63326460 63330703 4243 False 2660.200000 7838 96.970 1 4244 3 chr6D.!!$F2 4243
1 TraesCS6D01G100100 chr6B 136792459 136796751 4292 False 846.628571 2868 93.576 423 3583 7 chr6B.!!$F3 3160
2 TraesCS6D01G100100 chr6A 80804759 80808082 3323 False 1071.000000 1736 92.089 423 4244 4 chr6A.!!$F1 3821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 340 0.029163 TCTGGCCATCCCTATCCCAA 60.029 55.0 5.51 0.0 0.00 4.12 F
343 344 0.035458 GCCATCCCTATCCCAACTCG 59.965 60.0 0.00 0.0 0.00 4.18 F
352 353 0.037605 ATCCCAACTCGTCCGTGAAC 60.038 55.0 0.00 0.0 0.00 3.18 F
1247 1567 0.108756 GACCTTCCCTTCGACTTCCG 60.109 60.0 0.00 0.0 40.25 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 3241 1.203287 GCAGGAACAAGGGAATGCTTC 59.797 52.381 0.00 0.0 0.00 3.86 R
2008 3281 5.251700 AGTTACACCATCTTTCCCTGAGAAT 59.748 40.000 0.00 0.0 33.44 2.40 R
2506 3779 5.920312 AGAAATATGCGCTTATGTGATTCG 58.080 37.500 15.71 0.0 0.00 3.34 R
3332 4611 0.248565 GGTTGTACTCCCTCCGTTCC 59.751 60.000 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.969196 CGCGGCACTCACCTGTGT 62.969 66.667 0.00 0.00 39.89 3.72
18 19 2.591715 GCGGCACTCACCTGTGTT 60.592 61.111 0.00 0.00 39.89 3.32
19 20 2.896801 GCGGCACTCACCTGTGTTG 61.897 63.158 0.00 0.00 39.89 3.33
20 21 2.253758 CGGCACTCACCTGTGTTGG 61.254 63.158 0.00 0.00 39.89 3.77
21 22 2.555547 GGCACTCACCTGTGTTGGC 61.556 63.158 10.62 10.62 39.89 4.52
22 23 2.555547 GCACTCACCTGTGTTGGCC 61.556 63.158 0.00 0.00 39.89 5.36
23 24 2.111043 ACTCACCTGTGTTGGCCG 59.889 61.111 0.00 0.00 0.00 6.13
24 25 3.357079 CTCACCTGTGTTGGCCGC 61.357 66.667 0.00 0.00 0.00 6.53
25 26 4.947147 TCACCTGTGTTGGCCGCC 62.947 66.667 1.04 1.04 0.00 6.13
51 52 3.993535 GGCCTCTGCTGACAAAGG 58.006 61.111 0.00 0.00 37.74 3.11
52 53 1.376466 GGCCTCTGCTGACAAAGGA 59.624 57.895 0.00 0.00 37.74 3.36
53 54 0.676151 GGCCTCTGCTGACAAAGGAG 60.676 60.000 0.00 0.00 45.42 3.69
54 55 0.676151 GCCTCTGCTGACAAAGGAGG 60.676 60.000 10.94 10.94 44.23 4.30
55 56 0.979665 CCTCTGCTGACAAAGGAGGA 59.020 55.000 10.13 0.00 44.23 3.71
56 57 1.066286 CCTCTGCTGACAAAGGAGGAG 60.066 57.143 10.13 0.00 44.23 3.69
57 58 1.898472 CTCTGCTGACAAAGGAGGAGA 59.102 52.381 0.00 0.00 44.23 3.71
58 59 1.898472 TCTGCTGACAAAGGAGGAGAG 59.102 52.381 0.00 0.00 44.23 3.20
59 60 1.898472 CTGCTGACAAAGGAGGAGAGA 59.102 52.381 0.00 0.00 40.55 3.10
60 61 2.301296 CTGCTGACAAAGGAGGAGAGAA 59.699 50.000 0.00 0.00 40.55 2.87
61 62 2.301296 TGCTGACAAAGGAGGAGAGAAG 59.699 50.000 0.00 0.00 0.00 2.85
62 63 2.354604 GCTGACAAAGGAGGAGAGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
63 64 1.625818 TGACAAAGGAGGAGAGAAGGC 59.374 52.381 0.00 0.00 0.00 4.35
64 65 1.625818 GACAAAGGAGGAGAGAAGGCA 59.374 52.381 0.00 0.00 0.00 4.75
65 66 2.039084 GACAAAGGAGGAGAGAAGGCAA 59.961 50.000 0.00 0.00 0.00 4.52
66 67 2.443255 ACAAAGGAGGAGAGAAGGCAAA 59.557 45.455 0.00 0.00 0.00 3.68
67 68 3.080319 CAAAGGAGGAGAGAAGGCAAAG 58.920 50.000 0.00 0.00 0.00 2.77
68 69 1.284313 AGGAGGAGAGAAGGCAAAGG 58.716 55.000 0.00 0.00 0.00 3.11
69 70 1.203364 AGGAGGAGAGAAGGCAAAGGA 60.203 52.381 0.00 0.00 0.00 3.36
70 71 1.630878 GGAGGAGAGAAGGCAAAGGAA 59.369 52.381 0.00 0.00 0.00 3.36
71 72 2.355615 GGAGGAGAGAAGGCAAAGGAAG 60.356 54.545 0.00 0.00 0.00 3.46
72 73 1.632920 AGGAGAGAAGGCAAAGGAAGG 59.367 52.381 0.00 0.00 0.00 3.46
73 74 1.630878 GGAGAGAAGGCAAAGGAAGGA 59.369 52.381 0.00 0.00 0.00 3.36
74 75 2.355615 GGAGAGAAGGCAAAGGAAGGAG 60.356 54.545 0.00 0.00 0.00 3.69
75 76 2.569404 GAGAGAAGGCAAAGGAAGGAGA 59.431 50.000 0.00 0.00 0.00 3.71
76 77 2.571202 AGAGAAGGCAAAGGAAGGAGAG 59.429 50.000 0.00 0.00 0.00 3.20
77 78 2.569404 GAGAAGGCAAAGGAAGGAGAGA 59.431 50.000 0.00 0.00 0.00 3.10
78 79 2.571202 AGAAGGCAAAGGAAGGAGAGAG 59.429 50.000 0.00 0.00 0.00 3.20
79 80 2.037385 AGGCAAAGGAAGGAGAGAGT 57.963 50.000 0.00 0.00 0.00 3.24
80 81 1.905894 AGGCAAAGGAAGGAGAGAGTC 59.094 52.381 0.00 0.00 0.00 3.36
81 82 1.625818 GGCAAAGGAAGGAGAGAGTCA 59.374 52.381 0.00 0.00 0.00 3.41
82 83 2.238395 GGCAAAGGAAGGAGAGAGTCAT 59.762 50.000 0.00 0.00 0.00 3.06
83 84 3.269178 GCAAAGGAAGGAGAGAGTCATG 58.731 50.000 0.00 0.00 0.00 3.07
84 85 3.269178 CAAAGGAAGGAGAGAGTCATGC 58.731 50.000 0.00 0.00 0.00 4.06
85 86 1.494960 AGGAAGGAGAGAGTCATGCC 58.505 55.000 0.00 0.00 0.00 4.40
86 87 0.103937 GGAAGGAGAGAGTCATGCCG 59.896 60.000 0.00 0.00 0.00 5.69
87 88 0.529555 GAAGGAGAGAGTCATGCCGC 60.530 60.000 0.00 0.00 0.00 6.53
88 89 0.975040 AAGGAGAGAGTCATGCCGCT 60.975 55.000 0.00 0.00 0.00 5.52
89 90 1.227205 GGAGAGAGTCATGCCGCTG 60.227 63.158 0.00 0.00 0.00 5.18
90 91 1.515020 GAGAGAGTCATGCCGCTGT 59.485 57.895 0.00 0.00 0.00 4.40
91 92 0.805322 GAGAGAGTCATGCCGCTGTG 60.805 60.000 0.00 0.00 0.00 3.66
92 93 2.435586 AGAGTCATGCCGCTGTGC 60.436 61.111 0.00 0.00 0.00 4.57
93 94 2.743538 GAGTCATGCCGCTGTGCA 60.744 61.111 0.00 0.00 46.94 4.57
94 95 3.031964 GAGTCATGCCGCTGTGCAC 62.032 63.158 10.75 10.75 45.48 4.57
95 96 3.052082 GTCATGCCGCTGTGCACT 61.052 61.111 19.41 0.00 45.48 4.40
96 97 2.743538 TCATGCCGCTGTGCACTC 60.744 61.111 19.41 8.94 45.48 3.51
97 98 3.051479 CATGCCGCTGTGCACTCA 61.051 61.111 19.41 8.39 45.48 3.41
98 99 3.052082 ATGCCGCTGTGCACTCAC 61.052 61.111 19.41 6.33 45.48 3.51
99 100 3.541950 ATGCCGCTGTGCACTCACT 62.542 57.895 19.41 0.00 45.48 3.41
100 101 3.720193 GCCGCTGTGCACTCACTG 61.720 66.667 19.41 5.00 43.49 3.66
101 102 2.280389 CCGCTGTGCACTCACTGT 60.280 61.111 19.41 0.00 43.49 3.55
102 103 2.313172 CCGCTGTGCACTCACTGTC 61.313 63.158 19.41 0.00 43.49 3.51
103 104 2.652079 CGCTGTGCACTCACTGTCG 61.652 63.158 19.41 6.92 43.49 4.35
104 105 1.592669 GCTGTGCACTCACTGTCGT 60.593 57.895 19.41 0.00 43.49 4.34
105 106 1.552348 GCTGTGCACTCACTGTCGTC 61.552 60.000 19.41 0.00 43.49 4.20
106 107 0.941463 CTGTGCACTCACTGTCGTCC 60.941 60.000 19.41 0.00 43.49 4.79
107 108 1.664965 GTGCACTCACTGTCGTCCC 60.665 63.158 10.32 0.00 40.03 4.46
108 109 2.048127 GCACTCACTGTCGTCCCC 60.048 66.667 0.00 0.00 0.00 4.81
109 110 2.258591 CACTCACTGTCGTCCCCG 59.741 66.667 0.00 0.00 0.00 5.73
110 111 2.989824 ACTCACTGTCGTCCCCGG 60.990 66.667 0.00 0.00 33.95 5.73
111 112 3.760035 CTCACTGTCGTCCCCGGG 61.760 72.222 15.80 15.80 33.95 5.73
112 113 4.289101 TCACTGTCGTCCCCGGGA 62.289 66.667 26.32 0.34 33.95 5.14
113 114 3.075005 CACTGTCGTCCCCGGGAT 61.075 66.667 26.32 0.00 32.73 3.85
114 115 2.284405 ACTGTCGTCCCCGGGATT 60.284 61.111 26.32 0.00 32.73 3.01
115 116 2.186903 CTGTCGTCCCCGGGATTG 59.813 66.667 26.32 11.13 32.73 2.67
116 117 3.385749 CTGTCGTCCCCGGGATTGG 62.386 68.421 26.32 4.74 32.73 3.16
117 118 3.078836 GTCGTCCCCGGGATTGGA 61.079 66.667 26.32 7.77 32.73 3.53
118 119 2.041301 TCGTCCCCGGGATTGGAT 60.041 61.111 26.32 0.00 32.73 3.41
119 120 2.138179 TCGTCCCCGGGATTGGATC 61.138 63.158 26.32 4.64 32.73 3.36
120 121 2.140792 CGTCCCCGGGATTGGATCT 61.141 63.158 26.32 0.00 32.73 2.75
121 122 1.451936 GTCCCCGGGATTGGATCTG 59.548 63.158 26.32 0.57 32.73 2.90
122 123 2.113986 CCCCGGGATTGGATCTGC 59.886 66.667 26.32 0.00 0.00 4.26
123 124 2.113986 CCCGGGATTGGATCTGCC 59.886 66.667 18.48 0.00 37.10 4.85
124 125 2.281070 CCGGGATTGGATCTGCCG 60.281 66.667 6.43 6.43 40.66 5.69
125 126 2.281070 CGGGATTGGATCTGCCGG 60.281 66.667 0.00 0.00 40.66 6.13
126 127 2.595754 GGGATTGGATCTGCCGGC 60.596 66.667 22.73 22.73 40.66 6.13
127 128 2.974698 GGATTGGATCTGCCGGCG 60.975 66.667 23.90 16.91 40.66 6.46
128 129 3.654020 GATTGGATCTGCCGGCGC 61.654 66.667 23.90 10.97 40.66 6.53
161 162 4.093952 GTCGTCGTCGGGCTTCGA 62.094 66.667 1.55 0.00 46.77 3.71
188 189 4.742201 GCGGCTGCAACGGAGAGA 62.742 66.667 14.08 0.00 42.15 3.10
189 190 2.048222 CGGCTGCAACGGAGAGAA 60.048 61.111 0.50 0.00 0.00 2.87
190 191 2.097038 CGGCTGCAACGGAGAGAAG 61.097 63.158 0.50 0.00 0.00 2.85
191 192 1.293498 GGCTGCAACGGAGAGAAGA 59.707 57.895 0.50 0.00 0.00 2.87
192 193 0.739112 GGCTGCAACGGAGAGAAGAG 60.739 60.000 0.50 0.00 0.00 2.85
193 194 0.244994 GCTGCAACGGAGAGAAGAGA 59.755 55.000 0.00 0.00 0.00 3.10
194 195 1.735369 GCTGCAACGGAGAGAAGAGAG 60.735 57.143 0.00 0.00 0.00 3.20
195 196 1.815613 CTGCAACGGAGAGAAGAGAGA 59.184 52.381 0.00 0.00 0.00 3.10
196 197 2.426738 CTGCAACGGAGAGAAGAGAGAT 59.573 50.000 0.00 0.00 0.00 2.75
197 198 2.165234 TGCAACGGAGAGAAGAGAGATG 59.835 50.000 0.00 0.00 0.00 2.90
198 199 2.481104 GCAACGGAGAGAAGAGAGATGG 60.481 54.545 0.00 0.00 0.00 3.51
199 200 3.020274 CAACGGAGAGAAGAGAGATGGA 58.980 50.000 0.00 0.00 0.00 3.41
200 201 3.374042 ACGGAGAGAAGAGAGATGGAA 57.626 47.619 0.00 0.00 0.00 3.53
201 202 3.702792 ACGGAGAGAAGAGAGATGGAAA 58.297 45.455 0.00 0.00 0.00 3.13
202 203 3.699038 ACGGAGAGAAGAGAGATGGAAAG 59.301 47.826 0.00 0.00 0.00 2.62
203 204 3.068024 CGGAGAGAAGAGAGATGGAAAGG 59.932 52.174 0.00 0.00 0.00 3.11
204 205 3.387699 GGAGAGAAGAGAGATGGAAAGGG 59.612 52.174 0.00 0.00 0.00 3.95
205 206 3.383223 AGAGAAGAGAGATGGAAAGGGG 58.617 50.000 0.00 0.00 0.00 4.79
206 207 3.013417 AGAGAAGAGAGATGGAAAGGGGA 59.987 47.826 0.00 0.00 0.00 4.81
207 208 3.777522 GAGAAGAGAGATGGAAAGGGGAA 59.222 47.826 0.00 0.00 0.00 3.97
208 209 4.179133 AGAAGAGAGATGGAAAGGGGAAA 58.821 43.478 0.00 0.00 0.00 3.13
209 210 4.603610 AGAAGAGAGATGGAAAGGGGAAAA 59.396 41.667 0.00 0.00 0.00 2.29
210 211 4.582973 AGAGAGATGGAAAGGGGAAAAG 57.417 45.455 0.00 0.00 0.00 2.27
211 212 4.179133 AGAGAGATGGAAAGGGGAAAAGA 58.821 43.478 0.00 0.00 0.00 2.52
212 213 4.227073 AGAGAGATGGAAAGGGGAAAAGAG 59.773 45.833 0.00 0.00 0.00 2.85
213 214 4.179133 AGAGATGGAAAGGGGAAAAGAGA 58.821 43.478 0.00 0.00 0.00 3.10
214 215 4.792972 AGAGATGGAAAGGGGAAAAGAGAT 59.207 41.667 0.00 0.00 0.00 2.75
215 216 5.973124 AGAGATGGAAAGGGGAAAAGAGATA 59.027 40.000 0.00 0.00 0.00 1.98
216 217 6.101005 AGAGATGGAAAGGGGAAAAGAGATAG 59.899 42.308 0.00 0.00 0.00 2.08
217 218 5.973124 AGATGGAAAGGGGAAAAGAGATAGA 59.027 40.000 0.00 0.00 0.00 1.98
218 219 6.623183 AGATGGAAAGGGGAAAAGAGATAGAT 59.377 38.462 0.00 0.00 0.00 1.98
219 220 7.796637 AGATGGAAAGGGGAAAAGAGATAGATA 59.203 37.037 0.00 0.00 0.00 1.98
220 221 7.380423 TGGAAAGGGGAAAAGAGATAGATAG 57.620 40.000 0.00 0.00 0.00 2.08
221 222 7.139619 TGGAAAGGGGAAAAGAGATAGATAGA 58.860 38.462 0.00 0.00 0.00 1.98
222 223 7.291182 TGGAAAGGGGAAAAGAGATAGATAGAG 59.709 40.741 0.00 0.00 0.00 2.43
223 224 6.680148 AAGGGGAAAAGAGATAGATAGAGC 57.320 41.667 0.00 0.00 0.00 4.09
224 225 4.770010 AGGGGAAAAGAGATAGATAGAGCG 59.230 45.833 0.00 0.00 0.00 5.03
225 226 4.081917 GGGGAAAAGAGATAGATAGAGCGG 60.082 50.000 0.00 0.00 0.00 5.52
226 227 4.767928 GGGAAAAGAGATAGATAGAGCGGA 59.232 45.833 0.00 0.00 0.00 5.54
227 228 5.105917 GGGAAAAGAGATAGATAGAGCGGAG 60.106 48.000 0.00 0.00 0.00 4.63
228 229 5.708230 GGAAAAGAGATAGATAGAGCGGAGA 59.292 44.000 0.00 0.00 0.00 3.71
229 230 6.207810 GGAAAAGAGATAGATAGAGCGGAGAA 59.792 42.308 0.00 0.00 0.00 2.87
230 231 7.255660 GGAAAAGAGATAGATAGAGCGGAGAAA 60.256 40.741 0.00 0.00 0.00 2.52
231 232 7.589958 AAAGAGATAGATAGAGCGGAGAAAA 57.410 36.000 0.00 0.00 0.00 2.29
232 233 7.589958 AAGAGATAGATAGAGCGGAGAAAAA 57.410 36.000 0.00 0.00 0.00 1.94
233 234 6.977213 AGAGATAGATAGAGCGGAGAAAAAC 58.023 40.000 0.00 0.00 0.00 2.43
234 235 5.764131 AGATAGATAGAGCGGAGAAAAACG 58.236 41.667 0.00 0.00 0.00 3.60
235 236 3.870633 AGATAGAGCGGAGAAAAACGT 57.129 42.857 0.00 0.00 0.00 3.99
236 237 4.189639 AGATAGAGCGGAGAAAAACGTT 57.810 40.909 0.00 0.00 0.00 3.99
237 238 4.566987 AGATAGAGCGGAGAAAAACGTTT 58.433 39.130 7.96 7.96 0.00 3.60
238 239 4.626172 AGATAGAGCGGAGAAAAACGTTTC 59.374 41.667 15.01 2.55 43.05 2.78
239 240 1.525619 AGAGCGGAGAAAAACGTTTCG 59.474 47.619 15.01 13.81 46.56 3.46
240 241 0.041576 AGCGGAGAAAAACGTTTCGC 60.042 50.000 26.85 26.85 46.56 4.70
241 242 1.318325 GCGGAGAAAAACGTTTCGCG 61.318 55.000 22.51 13.36 46.56 5.87
242 243 0.720173 CGGAGAAAAACGTTTCGCGG 60.720 55.000 15.01 5.51 46.56 6.46
243 244 0.385098 GGAGAAAAACGTTTCGCGGG 60.385 55.000 15.01 0.00 46.56 6.13
244 245 0.995234 GAGAAAAACGTTTCGCGGGC 60.995 55.000 15.01 0.79 46.56 6.13
245 246 2.012414 GAAAAACGTTTCGCGGGCC 61.012 57.895 15.01 0.00 46.52 5.80
246 247 3.810467 AAAAACGTTTCGCGGGCCG 62.810 57.895 24.35 24.35 46.52 6.13
272 273 2.969238 GATGCCCACATCCGCGAG 60.969 66.667 8.23 0.00 45.94 5.03
273 274 3.445518 GATGCCCACATCCGCGAGA 62.446 63.158 8.23 3.13 45.94 4.04
274 275 2.721971 GATGCCCACATCCGCGAGAT 62.722 60.000 8.23 5.89 45.94 2.75
275 276 2.203070 GCCCACATCCGCGAGATT 60.203 61.111 8.23 0.00 30.59 2.40
276 277 1.819632 GCCCACATCCGCGAGATTT 60.820 57.895 8.23 0.00 30.59 2.17
277 278 1.376609 GCCCACATCCGCGAGATTTT 61.377 55.000 8.23 0.00 30.59 1.82
278 279 0.657840 CCCACATCCGCGAGATTTTC 59.342 55.000 8.23 0.00 30.59 2.29
286 287 2.316687 CGAGATTTTCGCGGACGC 59.683 61.111 6.13 6.63 43.22 5.19
304 305 3.183259 GCATAGCCGCGTTTTGGA 58.817 55.556 4.92 0.00 0.00 3.53
305 306 1.226295 GCATAGCCGCGTTTTGGAC 60.226 57.895 4.92 0.00 0.00 4.02
326 327 3.820777 GAATATTCGAAGCATCTGGCC 57.179 47.619 3.35 0.00 46.50 5.36
327 328 2.936919 ATATTCGAAGCATCTGGCCA 57.063 45.000 4.71 4.71 46.50 5.36
328 329 2.936919 TATTCGAAGCATCTGGCCAT 57.063 45.000 5.51 0.00 46.50 4.40
329 330 1.602311 ATTCGAAGCATCTGGCCATC 58.398 50.000 5.51 0.00 46.50 3.51
330 331 0.464373 TTCGAAGCATCTGGCCATCC 60.464 55.000 5.51 0.00 46.50 3.51
331 332 1.895707 CGAAGCATCTGGCCATCCC 60.896 63.158 5.51 0.00 46.50 3.85
332 333 1.535685 GAAGCATCTGGCCATCCCT 59.464 57.895 5.51 0.00 46.50 4.20
333 334 0.767375 GAAGCATCTGGCCATCCCTA 59.233 55.000 5.51 0.00 46.50 3.53
334 335 1.353694 GAAGCATCTGGCCATCCCTAT 59.646 52.381 5.51 0.00 46.50 2.57
335 336 0.990374 AGCATCTGGCCATCCCTATC 59.010 55.000 5.51 0.00 46.50 2.08
336 337 0.034670 GCATCTGGCCATCCCTATCC 60.035 60.000 5.51 0.00 36.11 2.59
337 338 0.622665 CATCTGGCCATCCCTATCCC 59.377 60.000 5.51 0.00 0.00 3.85
338 339 0.196888 ATCTGGCCATCCCTATCCCA 59.803 55.000 5.51 0.00 0.00 4.37
339 340 0.029163 TCTGGCCATCCCTATCCCAA 60.029 55.000 5.51 0.00 0.00 4.12
340 341 0.111253 CTGGCCATCCCTATCCCAAC 59.889 60.000 5.51 0.00 0.00 3.77
341 342 0.328450 TGGCCATCCCTATCCCAACT 60.328 55.000 0.00 0.00 0.00 3.16
342 343 0.402121 GGCCATCCCTATCCCAACTC 59.598 60.000 0.00 0.00 0.00 3.01
343 344 0.035458 GCCATCCCTATCCCAACTCG 59.965 60.000 0.00 0.00 0.00 4.18
344 345 1.424638 CCATCCCTATCCCAACTCGT 58.575 55.000 0.00 0.00 0.00 4.18
345 346 1.344763 CCATCCCTATCCCAACTCGTC 59.655 57.143 0.00 0.00 0.00 4.20
346 347 1.344763 CATCCCTATCCCAACTCGTCC 59.655 57.143 0.00 0.00 0.00 4.79
347 348 0.754217 TCCCTATCCCAACTCGTCCG 60.754 60.000 0.00 0.00 0.00 4.79
348 349 1.041447 CCCTATCCCAACTCGTCCGT 61.041 60.000 0.00 0.00 0.00 4.69
349 350 0.102481 CCTATCCCAACTCGTCCGTG 59.898 60.000 0.00 0.00 0.00 4.94
350 351 1.100510 CTATCCCAACTCGTCCGTGA 58.899 55.000 0.00 0.00 0.00 4.35
351 352 1.475280 CTATCCCAACTCGTCCGTGAA 59.525 52.381 0.00 0.00 0.00 3.18
352 353 0.037605 ATCCCAACTCGTCCGTGAAC 60.038 55.000 0.00 0.00 0.00 3.18
353 354 1.666872 CCCAACTCGTCCGTGAACC 60.667 63.158 0.00 0.00 0.00 3.62
354 355 1.068417 CCAACTCGTCCGTGAACCA 59.932 57.895 0.00 0.00 0.00 3.67
355 356 0.531090 CCAACTCGTCCGTGAACCAA 60.531 55.000 0.00 0.00 0.00 3.67
356 357 1.292061 CAACTCGTCCGTGAACCAAA 58.708 50.000 0.00 0.00 0.00 3.28
357 358 1.004292 CAACTCGTCCGTGAACCAAAC 60.004 52.381 0.00 0.00 0.00 2.93
358 359 0.872881 ACTCGTCCGTGAACCAAACG 60.873 55.000 0.00 0.00 40.70 3.60
359 360 0.595567 CTCGTCCGTGAACCAAACGA 60.596 55.000 0.00 0.00 43.68 3.85
360 361 0.871163 TCGTCCGTGAACCAAACGAC 60.871 55.000 0.00 0.00 43.68 4.34
361 362 0.872881 CGTCCGTGAACCAAACGACT 60.873 55.000 0.00 0.00 43.68 4.18
362 363 0.580104 GTCCGTGAACCAAACGACTG 59.420 55.000 0.00 0.00 43.68 3.51
363 364 0.176219 TCCGTGAACCAAACGACTGT 59.824 50.000 0.00 0.00 43.68 3.55
364 365 0.580104 CCGTGAACCAAACGACTGTC 59.420 55.000 0.00 0.00 43.68 3.51
365 366 1.282817 CGTGAACCAAACGACTGTCA 58.717 50.000 8.73 0.00 43.68 3.58
366 367 1.864711 CGTGAACCAAACGACTGTCAT 59.135 47.619 8.73 0.00 43.68 3.06
367 368 2.096909 CGTGAACCAAACGACTGTCATC 60.097 50.000 8.73 0.00 43.68 2.92
368 369 2.223377 GTGAACCAAACGACTGTCATCC 59.777 50.000 8.73 0.00 0.00 3.51
369 370 2.158885 TGAACCAAACGACTGTCATCCA 60.159 45.455 8.73 0.00 0.00 3.41
370 371 1.878953 ACCAAACGACTGTCATCCAC 58.121 50.000 8.73 0.00 0.00 4.02
371 372 0.790207 CCAAACGACTGTCATCCACG 59.210 55.000 8.73 0.00 0.00 4.94
372 373 1.497991 CAAACGACTGTCATCCACGT 58.502 50.000 8.73 0.00 38.81 4.49
373 374 2.608506 CCAAACGACTGTCATCCACGTA 60.609 50.000 8.73 0.00 36.20 3.57
374 375 3.054166 CAAACGACTGTCATCCACGTAA 58.946 45.455 8.73 0.00 36.20 3.18
375 376 3.374220 AACGACTGTCATCCACGTAAA 57.626 42.857 8.73 0.00 36.20 2.01
376 377 3.374220 ACGACTGTCATCCACGTAAAA 57.626 42.857 8.73 0.00 35.49 1.52
377 378 3.719924 ACGACTGTCATCCACGTAAAAA 58.280 40.909 8.73 0.00 35.49 1.94
394 395 3.806949 AAAAACAGCTATCCCTGTCCA 57.193 42.857 0.00 0.00 44.86 4.02
395 396 3.806949 AAAACAGCTATCCCTGTCCAA 57.193 42.857 0.00 0.00 44.86 3.53
396 397 2.789409 AACAGCTATCCCTGTCCAAC 57.211 50.000 0.00 0.00 44.86 3.77
397 398 1.656587 ACAGCTATCCCTGTCCAACA 58.343 50.000 0.00 0.00 42.10 3.33
398 399 1.556911 ACAGCTATCCCTGTCCAACAG 59.443 52.381 0.01 0.01 42.10 3.16
408 409 1.204146 TGTCCAACAGAGGGATAGCC 58.796 55.000 0.00 0.00 36.67 3.93
419 420 3.827505 GGATAGCCCAGCATCCAAA 57.172 52.632 10.99 0.00 36.75 3.28
420 421 1.322442 GGATAGCCCAGCATCCAAAC 58.678 55.000 10.99 0.00 36.75 2.93
421 422 0.947244 GATAGCCCAGCATCCAAACG 59.053 55.000 0.00 0.00 0.00 3.60
424 425 2.713967 GCCCAGCATCCAAACGCAT 61.714 57.895 0.00 0.00 0.00 4.73
647 932 4.426112 CGACGAGCAGAGCAGCCA 62.426 66.667 0.00 0.00 34.23 4.75
762 1068 1.677637 CCCCTCCTCTCGCTGGTAAC 61.678 65.000 0.00 0.00 0.00 2.50
775 1081 2.353406 GCTGGTAACTTTCTCGCTGGTA 60.353 50.000 0.00 0.00 37.61 3.25
776 1082 3.512680 CTGGTAACTTTCTCGCTGGTAG 58.487 50.000 0.00 0.00 37.61 3.18
839 1148 9.955102 ATTGTCACACTGCATATATAGATGATT 57.045 29.630 11.53 0.00 0.00 2.57
846 1155 9.694520 CACTGCATATATAGATGATTTAAACGC 57.305 33.333 11.53 0.00 0.00 4.84
884 1193 6.704289 AATGGAATGGATTGTGTATGTGAG 57.296 37.500 0.00 0.00 0.00 3.51
885 1194 3.947196 TGGAATGGATTGTGTATGTGAGC 59.053 43.478 0.00 0.00 0.00 4.26
919 1236 1.742761 AATGTGCTGATGGAACTCGG 58.257 50.000 0.00 0.00 0.00 4.63
932 1249 5.119931 TGGAACTCGGTTGATTCATTTTG 57.880 39.130 0.00 0.00 0.00 2.44
972 1289 2.519771 TGCTTCAATCCTGGCTTCAT 57.480 45.000 0.00 0.00 0.00 2.57
1013 1330 0.742281 CCCACCATGCTCTTCAGTCG 60.742 60.000 0.00 0.00 0.00 4.18
1014 1331 0.742281 CCACCATGCTCTTCAGTCGG 60.742 60.000 0.00 0.00 0.00 4.79
1024 1341 2.003196 CTTCAGTCGGAAGCTTCTCC 57.997 55.000 25.05 10.44 45.99 3.71
1079 1399 2.275547 CTGCTCTGCCGCCCATTTTC 62.276 60.000 0.00 0.00 0.00 2.29
1100 1420 0.611062 GCCTTCTACCCAACCAACCC 60.611 60.000 0.00 0.00 0.00 4.11
1110 1430 1.004200 AACCAACCCCGACGATGAC 60.004 57.895 0.00 0.00 0.00 3.06
1113 1433 1.804326 CAACCCCGACGATGACGAC 60.804 63.158 0.00 0.00 42.66 4.34
1116 1436 3.138798 CCCGACGATGACGACCCT 61.139 66.667 0.00 0.00 42.66 4.34
1139 1459 2.095617 CGTTTACACGGATCCCCAAAAC 60.096 50.000 6.06 10.66 43.16 2.43
1140 1460 2.203470 TTACACGGATCCCCAAAACC 57.797 50.000 6.06 0.00 0.00 3.27
1153 1473 0.537371 CAAAACCCCACCTCGAGCTT 60.537 55.000 6.99 0.00 0.00 3.74
1155 1475 2.450479 AAACCCCACCTCGAGCTTCG 62.450 60.000 6.99 0.00 42.10 3.79
1156 1476 4.148825 CCCCACCTCGAGCTTCGG 62.149 72.222 6.99 3.81 40.88 4.30
1247 1567 0.108756 GACCTTCCCTTCGACTTCCG 60.109 60.000 0.00 0.00 40.25 4.30
1280 1600 1.304547 AGACTGACCCGACCTGGAG 60.305 63.158 0.00 0.00 42.00 3.86
1302 1622 4.028490 ATTGGGTTCCGCGAGCCA 62.028 61.111 14.04 14.04 44.90 4.75
1320 1640 1.900016 AACCCGGTTTTCGCCCTTC 60.900 57.895 0.00 0.00 37.59 3.46
1400 1720 3.710209 AGGGAACAGAGAGGATGTTTG 57.290 47.619 0.00 0.00 40.86 2.93
1440 1760 4.704833 GAGGTGCTTGGCGAGGCA 62.705 66.667 0.17 0.17 36.01 4.75
1622 2895 9.381033 CAAATCCCAATCTTATTGCACATTTTA 57.619 29.630 0.00 0.00 0.00 1.52
1765 3038 7.496346 ACTCCCTCTGTCAACAAATATAAGA 57.504 36.000 0.00 0.00 0.00 2.10
1766 3039 8.095452 ACTCCCTCTGTCAACAAATATAAGAT 57.905 34.615 0.00 0.00 0.00 2.40
1767 3040 7.989741 ACTCCCTCTGTCAACAAATATAAGATG 59.010 37.037 0.00 0.00 0.00 2.90
1768 3041 7.861629 TCCCTCTGTCAACAAATATAAGATGT 58.138 34.615 0.00 0.00 0.00 3.06
1769 3042 8.328758 TCCCTCTGTCAACAAATATAAGATGTT 58.671 33.333 0.00 0.00 37.76 2.71
1770 3043 8.960591 CCCTCTGTCAACAAATATAAGATGTTT 58.039 33.333 0.00 0.00 35.22 2.83
1834 3107 7.622081 TGTTTACAGAGGAAGTATATGGGAAGA 59.378 37.037 0.00 0.00 0.00 2.87
2008 3281 8.173542 TCCTGCTATAAATAAGATGTGTCGTA 57.826 34.615 0.00 0.00 0.00 3.43
2208 3481 7.056635 TGAACTCTCCTTTTCTGTTGAATTCT 58.943 34.615 7.05 0.00 31.56 2.40
2506 3779 8.225603 TGGAATATTTCTAGCAAGACCATTTC 57.774 34.615 0.00 0.00 0.00 2.17
2845 4124 8.652810 AGAACAATGAAACTGGAAAGAATTTG 57.347 30.769 0.00 0.00 39.27 2.32
2888 4167 3.899360 AGGTGTGCTGGTGTAGTAGTTAA 59.101 43.478 0.00 0.00 0.00 2.01
3053 4332 7.983307 TGGAGAGTTTACGATAGAAACTAGAC 58.017 38.462 0.00 0.00 45.02 2.59
3226 4505 3.188048 GGACTCTGTTTCAGCTCATTGTG 59.812 47.826 0.00 0.00 0.00 3.33
3232 4511 3.633525 TGTTTCAGCTCATTGTGCTTCTT 59.366 39.130 10.38 0.00 38.92 2.52
3234 4513 2.156917 TCAGCTCATTGTGCTTCTTGG 58.843 47.619 10.38 0.31 38.92 3.61
3253 4532 1.521450 GCCACAGTGATGCAAGTGCT 61.521 55.000 0.62 0.00 42.66 4.40
3262 4541 5.352293 CAGTGATGCAAGTGCTTGTAATCTA 59.648 40.000 20.00 10.91 42.31 1.98
3263 4542 5.352569 AGTGATGCAAGTGCTTGTAATCTAC 59.647 40.000 20.00 17.10 42.31 2.59
3264 4543 5.352569 GTGATGCAAGTGCTTGTAATCTACT 59.647 40.000 20.00 2.87 42.31 2.57
3265 4544 5.582269 TGATGCAAGTGCTTGTAATCTACTC 59.418 40.000 20.00 9.79 42.31 2.59
3267 4546 3.623510 GCAAGTGCTTGTAATCTACTCCC 59.376 47.826 12.75 0.00 42.31 4.30
3268 4547 4.624125 GCAAGTGCTTGTAATCTACTCCCT 60.624 45.833 12.75 0.00 42.31 4.20
3269 4548 5.112686 CAAGTGCTTGTAATCTACTCCCTC 58.887 45.833 3.91 0.00 35.92 4.30
3270 4549 3.707102 AGTGCTTGTAATCTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
3271 4550 2.693591 TGCTTGTAATCTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
3272 4551 2.694109 GCTTGTAATCTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
3273 4552 3.132467 GCTTGTAATCTACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
3274 4553 4.737055 GCTTGTAATCTACTCCCTCCGTTC 60.737 50.000 0.00 0.00 0.00 3.95
3275 4554 3.294214 TGTAATCTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3276 4555 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
3277 4556 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
3278 4557 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
3279 4558 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3280 4559 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3281 4560 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3282 4561 5.383476 TCTACTCCCTCCGTTCCTAAATAG 58.617 45.833 0.00 0.00 0.00 1.73
3283 4562 4.261411 ACTCCCTCCGTTCCTAAATAGA 57.739 45.455 0.00 0.00 0.00 1.98
3284 4563 4.817286 ACTCCCTCCGTTCCTAAATAGAT 58.183 43.478 0.00 0.00 0.00 1.98
3285 4564 4.589374 ACTCCCTCCGTTCCTAAATAGATG 59.411 45.833 0.00 0.00 0.00 2.90
3286 4565 4.811498 TCCCTCCGTTCCTAAATAGATGA 58.189 43.478 0.00 0.00 0.00 2.92
3287 4566 4.587684 TCCCTCCGTTCCTAAATAGATGAC 59.412 45.833 0.00 0.00 0.00 3.06
3288 4567 4.589374 CCCTCCGTTCCTAAATAGATGACT 59.411 45.833 0.00 0.00 0.00 3.41
3289 4568 5.279056 CCCTCCGTTCCTAAATAGATGACTC 60.279 48.000 0.00 0.00 0.00 3.36
3290 4569 5.302059 CCTCCGTTCCTAAATAGATGACTCA 59.698 44.000 0.00 0.00 0.00 3.41
3291 4570 6.183360 CCTCCGTTCCTAAATAGATGACTCAA 60.183 42.308 0.00 0.00 0.00 3.02
3292 4571 6.570692 TCCGTTCCTAAATAGATGACTCAAC 58.429 40.000 0.00 0.00 0.00 3.18
3293 4572 6.380274 TCCGTTCCTAAATAGATGACTCAACT 59.620 38.462 0.00 0.00 0.00 3.16
3294 4573 7.042335 CCGTTCCTAAATAGATGACTCAACTT 58.958 38.462 0.00 0.00 0.00 2.66
3295 4574 7.549488 CCGTTCCTAAATAGATGACTCAACTTT 59.451 37.037 0.00 0.00 0.00 2.66
3296 4575 8.383619 CGTTCCTAAATAGATGACTCAACTTTG 58.616 37.037 0.00 0.00 0.00 2.77
3297 4576 9.220767 GTTCCTAAATAGATGACTCAACTTTGT 57.779 33.333 0.00 0.00 0.00 2.83
3299 4578 9.871238 TCCTAAATAGATGACTCAACTTTGTAC 57.129 33.333 0.00 0.00 0.00 2.90
3300 4579 9.877178 CCTAAATAGATGACTCAACTTTGTACT 57.123 33.333 0.00 0.00 0.00 2.73
3337 4616 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3338 4617 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3339 4618 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3340 4619 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3341 4620 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3342 4621 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3343 4622 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3344 4623 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3345 4624 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3346 4625 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3347 4626 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3348 4627 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
3349 4628 1.719529 TTGGAACGGAGGGAGTACAA 58.280 50.000 0.00 0.00 0.00 2.41
3350 4629 0.971386 TGGAACGGAGGGAGTACAAC 59.029 55.000 0.00 0.00 0.00 3.32
3351 4630 0.248565 GGAACGGAGGGAGTACAACC 59.751 60.000 0.00 0.00 0.00 3.77
3403 4682 2.288825 GGCCTGCTTTTTGGGTTACTTC 60.289 50.000 0.00 0.00 0.00 3.01
3462 4772 4.574013 GGATCTGCAGTCTACAAGAAATGG 59.426 45.833 14.67 0.00 0.00 3.16
3488 4798 7.115378 GTCTAATTGTTTGTCAGCATTTCTTGG 59.885 37.037 0.00 0.00 0.00 3.61
3536 4846 2.084546 GAGCATGTGGACCTTACAACC 58.915 52.381 0.00 0.00 0.00 3.77
3537 4847 1.423541 AGCATGTGGACCTTACAACCA 59.576 47.619 0.00 0.00 0.00 3.67
3583 4900 8.716909 GGTGAAGAGAAAGACAATTTCTAAGAG 58.283 37.037 3.00 0.00 38.73 2.85
3584 4901 8.227119 GTGAAGAGAAAGACAATTTCTAAGAGC 58.773 37.037 3.00 0.00 38.73 4.09
3585 4902 7.933577 TGAAGAGAAAGACAATTTCTAAGAGCA 59.066 33.333 3.00 0.00 38.73 4.26
3586 4903 8.860780 AAGAGAAAGACAATTTCTAAGAGCAT 57.139 30.769 3.00 0.00 38.73 3.79
3588 4905 8.320617 AGAGAAAGACAATTTCTAAGAGCATCT 58.679 33.333 3.00 0.00 42.73 2.90
3589 4906 8.491331 AGAAAGACAATTTCTAAGAGCATCTC 57.509 34.615 1.13 0.00 38.04 2.75
3598 4915 2.588314 GAGCATCTCCAGCAGCCG 60.588 66.667 0.00 0.00 0.00 5.52
3599 4916 4.853050 AGCATCTCCAGCAGCCGC 62.853 66.667 0.00 0.00 38.99 6.53
3611 4928 4.312052 AGCCGCGCTGGAAAAATA 57.688 50.000 20.06 0.00 42.00 1.40
3612 4929 1.800681 AGCCGCGCTGGAAAAATAC 59.199 52.632 20.06 2.83 42.00 1.89
3613 4930 0.958382 AGCCGCGCTGGAAAAATACA 60.958 50.000 20.06 0.00 42.00 2.29
3614 4931 0.523335 GCCGCGCTGGAAAAATACAG 60.523 55.000 20.06 0.00 42.00 2.74
3615 4932 1.083489 CCGCGCTGGAAAAATACAGA 58.917 50.000 12.11 0.00 42.00 3.41
3616 4933 1.670811 CCGCGCTGGAAAAATACAGAT 59.329 47.619 12.11 0.00 42.00 2.90
3617 4934 2.097466 CCGCGCTGGAAAAATACAGATT 59.903 45.455 12.11 0.00 42.00 2.40
3618 4935 3.427503 CCGCGCTGGAAAAATACAGATTT 60.428 43.478 12.11 0.00 42.00 2.17
3619 4936 4.165779 CGCGCTGGAAAAATACAGATTTT 58.834 39.130 5.56 0.00 45.30 1.82
3626 4943 3.970828 AAAATACAGATTTTTGCGCGC 57.029 38.095 27.26 27.26 41.53 6.86
3627 4944 1.534028 AATACAGATTTTTGCGCGCG 58.466 45.000 28.44 28.44 0.00 6.86
3628 4945 0.861450 ATACAGATTTTTGCGCGCGC 60.861 50.000 45.02 45.02 42.35 6.86
3686 5003 2.349648 CGCGCCGCTTATTTCGTG 60.350 61.111 7.78 0.00 0.00 4.35
3687 5004 2.647791 GCGCCGCTTATTTCGTGC 60.648 61.111 0.00 0.00 0.00 5.34
3691 5008 2.022762 CGCTTATTTCGTGCGCCC 59.977 61.111 4.18 0.00 43.08 6.13
3692 5009 2.745785 CGCTTATTTCGTGCGCCCA 61.746 57.895 4.18 0.00 43.08 5.36
3693 5010 1.226295 GCTTATTTCGTGCGCCCAC 60.226 57.895 4.18 0.00 38.62 4.61
3694 5011 1.644786 GCTTATTTCGTGCGCCCACT 61.645 55.000 4.18 0.00 39.86 4.00
3695 5012 0.802494 CTTATTTCGTGCGCCCACTT 59.198 50.000 4.18 0.00 39.86 3.16
3696 5013 0.800012 TTATTTCGTGCGCCCACTTC 59.200 50.000 4.18 0.00 39.86 3.01
3697 5014 1.022451 TATTTCGTGCGCCCACTTCC 61.022 55.000 4.18 0.00 39.86 3.46
3708 5025 3.838795 CACTTCCGCGCGCTACAC 61.839 66.667 30.48 0.00 0.00 2.90
3709 5026 4.351938 ACTTCCGCGCGCTACACA 62.352 61.111 30.48 7.34 0.00 3.72
3710 5027 3.838795 CTTCCGCGCGCTACACAC 61.839 66.667 30.48 0.00 0.00 3.82
3711 5028 4.351938 TTCCGCGCGCTACACACT 62.352 61.111 30.48 0.00 0.00 3.55
3712 5029 4.771356 TCCGCGCGCTACACACTC 62.771 66.667 30.48 0.00 0.00 3.51
3715 5032 3.241059 GCGCGCTACACACTCGAG 61.241 66.667 26.67 11.84 0.00 4.04
3716 5033 3.241059 CGCGCTACACACTCGAGC 61.241 66.667 13.61 0.00 0.00 5.03
3719 5036 2.881352 GCTACACACTCGAGCGCC 60.881 66.667 13.61 0.00 0.00 6.53
3720 5037 2.202623 CTACACACTCGAGCGCCC 60.203 66.667 13.61 0.00 0.00 6.13
3721 5038 2.675423 TACACACTCGAGCGCCCT 60.675 61.111 13.61 0.00 0.00 5.19
3722 5039 2.600122 CTACACACTCGAGCGCCCTC 62.600 65.000 13.61 0.00 34.66 4.30
3782 5099 3.202706 GCCTCCGGCGAATTCACC 61.203 66.667 9.30 4.14 39.62 4.02
3783 5100 2.513897 CCTCCGGCGAATTCACCC 60.514 66.667 9.30 4.66 0.00 4.61
3784 5101 2.890474 CTCCGGCGAATTCACCCG 60.890 66.667 21.45 21.45 41.60 5.28
3785 5102 3.365291 CTCCGGCGAATTCACCCGA 62.365 63.158 27.02 16.51 44.55 5.14
3786 5103 2.203015 CCGGCGAATTCACCCGAT 60.203 61.111 27.02 0.00 44.55 4.18
3787 5104 2.534019 CCGGCGAATTCACCCGATG 61.534 63.158 27.02 13.41 44.55 3.84
3788 5105 2.534019 CGGCGAATTCACCCGATGG 61.534 63.158 23.11 0.19 44.55 3.51
3789 5106 1.153249 GGCGAATTCACCCGATGGA 60.153 57.895 6.22 0.00 34.81 3.41
3790 5107 1.436983 GGCGAATTCACCCGATGGAC 61.437 60.000 6.22 0.00 34.81 4.02
3791 5108 1.762222 GCGAATTCACCCGATGGACG 61.762 60.000 6.22 0.00 42.18 4.79
3810 5127 4.473520 CCGCGCTGACATCCCCTT 62.474 66.667 5.56 0.00 0.00 3.95
3811 5128 2.892425 CGCGCTGACATCCCCTTC 60.892 66.667 5.56 0.00 0.00 3.46
3812 5129 2.268920 GCGCTGACATCCCCTTCA 59.731 61.111 0.00 0.00 0.00 3.02
3813 5130 2.109126 GCGCTGACATCCCCTTCAC 61.109 63.158 0.00 0.00 0.00 3.18
3814 5131 1.450312 CGCTGACATCCCCTTCACC 60.450 63.158 0.00 0.00 0.00 4.02
3815 5132 1.903877 CGCTGACATCCCCTTCACCT 61.904 60.000 0.00 0.00 0.00 4.00
3816 5133 0.107459 GCTGACATCCCCTTCACCTC 60.107 60.000 0.00 0.00 0.00 3.85
3817 5134 1.577736 CTGACATCCCCTTCACCTCT 58.422 55.000 0.00 0.00 0.00 3.69
3818 5135 1.912043 CTGACATCCCCTTCACCTCTT 59.088 52.381 0.00 0.00 0.00 2.85
3819 5136 1.909302 TGACATCCCCTTCACCTCTTC 59.091 52.381 0.00 0.00 0.00 2.87
3820 5137 1.210722 GACATCCCCTTCACCTCTTCC 59.789 57.143 0.00 0.00 0.00 3.46
3821 5138 1.203492 ACATCCCCTTCACCTCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
3822 5139 2.045885 ACATCCCCTTCACCTCTTCCTA 59.954 50.000 0.00 0.00 0.00 2.94
3823 5140 2.249309 TCCCCTTCACCTCTTCCTAC 57.751 55.000 0.00 0.00 0.00 3.18
3824 5141 1.435563 TCCCCTTCACCTCTTCCTACA 59.564 52.381 0.00 0.00 0.00 2.74
3825 5142 1.555533 CCCCTTCACCTCTTCCTACAC 59.444 57.143 0.00 0.00 0.00 2.90
3826 5143 1.555533 CCCTTCACCTCTTCCTACACC 59.444 57.143 0.00 0.00 0.00 4.16
3827 5144 1.555533 CCTTCACCTCTTCCTACACCC 59.444 57.143 0.00 0.00 0.00 4.61
3828 5145 1.204941 CTTCACCTCTTCCTACACCCG 59.795 57.143 0.00 0.00 0.00 5.28
3829 5146 1.218316 CACCTCTTCCTACACCCGC 59.782 63.158 0.00 0.00 0.00 6.13
3830 5147 2.348888 ACCTCTTCCTACACCCGCG 61.349 63.158 0.00 0.00 0.00 6.46
3831 5148 2.050350 CCTCTTCCTACACCCGCGA 61.050 63.158 8.23 0.00 0.00 5.87
3832 5149 1.139095 CTCTTCCTACACCCGCGAC 59.861 63.158 8.23 0.00 0.00 5.19
3833 5150 2.183555 CTTCCTACACCCGCGACC 59.816 66.667 8.23 0.00 0.00 4.79
3834 5151 3.366739 CTTCCTACACCCGCGACCC 62.367 68.421 8.23 0.00 0.00 4.46
3845 5162 2.436824 GCGACCCCTCCTTGCTTC 60.437 66.667 0.00 0.00 0.00 3.86
3897 5214 3.113824 AGCTGAGGGATTCATCTTCAGT 58.886 45.455 16.39 7.07 38.97 3.41
3898 5215 3.522750 AGCTGAGGGATTCATCTTCAGTT 59.477 43.478 16.39 11.41 38.97 3.16
3902 5219 4.937620 TGAGGGATTCATCTTCAGTTTTCG 59.062 41.667 0.00 0.00 0.00 3.46
3910 5227 4.770531 TCATCTTCAGTTTTCGGTCCTCTA 59.229 41.667 0.00 0.00 0.00 2.43
3912 5229 3.510360 TCTTCAGTTTTCGGTCCTCTAGG 59.490 47.826 0.00 0.00 0.00 3.02
3914 5231 3.236896 TCAGTTTTCGGTCCTCTAGGTT 58.763 45.455 0.00 0.00 36.34 3.50
3915 5232 3.644738 TCAGTTTTCGGTCCTCTAGGTTT 59.355 43.478 0.00 0.00 36.34 3.27
3917 5234 2.991866 GTTTTCGGTCCTCTAGGTTTCG 59.008 50.000 0.00 0.00 36.34 3.46
3921 5238 0.976590 GGTCCTCTAGGTTTCGCCCT 60.977 60.000 0.00 0.00 38.26 5.19
3971 5288 2.753452 CTGTTGCTTCATCTGCCTGATT 59.247 45.455 0.00 0.00 32.05 2.57
4005 5322 2.736721 TCGAGATTGAGACGCCAAAAAG 59.263 45.455 0.00 0.00 0.00 2.27
4006 5323 2.726066 CGAGATTGAGACGCCAAAAAGC 60.726 50.000 0.00 0.00 0.00 3.51
4012 5329 2.622942 TGAGACGCCAAAAAGCAGAATT 59.377 40.909 0.00 0.00 0.00 2.17
4014 5331 3.383761 AGACGCCAAAAAGCAGAATTTG 58.616 40.909 0.00 0.00 36.52 2.32
4016 5333 4.037446 AGACGCCAAAAAGCAGAATTTGTA 59.963 37.500 0.00 0.00 35.30 2.41
4017 5334 4.048504 ACGCCAAAAAGCAGAATTTGTAC 58.951 39.130 0.00 0.00 35.30 2.90
4055 5372 4.994907 TCCATGCCATTTGAATCAAGAG 57.005 40.909 0.00 0.00 0.00 2.85
4081 5398 2.293170 GGTCTGAGCCTCAAATAAGCC 58.707 52.381 0.00 0.00 0.00 4.35
4097 5414 1.463674 AGCCTTTTAGCCGATGTTGG 58.536 50.000 0.00 0.00 0.00 3.77
4098 5415 1.173913 GCCTTTTAGCCGATGTTGGT 58.826 50.000 0.00 0.00 0.00 3.67
4102 5419 2.552599 TTTAGCCGATGTTGGTCACA 57.447 45.000 0.00 0.00 40.71 3.58
4110 5427 2.742774 GATGTTGGTCACACTTTTGGC 58.257 47.619 0.00 0.00 38.61 4.52
4186 5503 0.536006 GGCTGTGTGACTTGCCTTCT 60.536 55.000 6.77 0.00 41.92 2.85
4190 5507 0.040958 GTGTGACTTGCCTTCTTGCG 60.041 55.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.969196 ACACAGGTGAGTGCCGCG 62.969 66.667 6.40 0.00 43.23 6.46
1 2 2.591715 AACACAGGTGAGTGCCGC 60.592 61.111 6.40 0.00 43.23 6.53
2 3 2.253758 CCAACACAGGTGAGTGCCG 61.254 63.158 6.40 0.00 43.23 5.69
3 4 2.555547 GCCAACACAGGTGAGTGCC 61.556 63.158 6.40 0.00 43.23 5.01
4 5 2.555547 GGCCAACACAGGTGAGTGC 61.556 63.158 6.40 5.06 43.23 4.40
5 6 2.253758 CGGCCAACACAGGTGAGTG 61.254 63.158 2.24 3.95 44.93 3.51
6 7 2.111043 CGGCCAACACAGGTGAGT 59.889 61.111 2.24 0.00 0.00 3.41
7 8 3.357079 GCGGCCAACACAGGTGAG 61.357 66.667 2.24 0.00 0.00 3.51
8 9 4.947147 GGCGGCCAACACAGGTGA 62.947 66.667 15.62 0.00 0.00 4.02
30 31 3.573772 TTGTCAGCAGAGGCCGTCG 62.574 63.158 0.00 0.00 42.56 5.12
31 32 1.294659 CTTTGTCAGCAGAGGCCGTC 61.295 60.000 0.00 0.00 42.56 4.79
32 33 1.302033 CTTTGTCAGCAGAGGCCGT 60.302 57.895 0.00 0.00 42.56 5.68
33 34 2.037136 CCTTTGTCAGCAGAGGCCG 61.037 63.158 0.00 0.00 39.66 6.13
34 35 0.676151 CTCCTTTGTCAGCAGAGGCC 60.676 60.000 0.00 0.00 44.22 5.19
35 36 0.676151 CCTCCTTTGTCAGCAGAGGC 60.676 60.000 0.00 0.00 44.22 4.70
36 37 0.979665 TCCTCCTTTGTCAGCAGAGG 59.020 55.000 7.48 7.48 45.48 3.69
37 38 1.898472 TCTCCTCCTTTGTCAGCAGAG 59.102 52.381 0.00 0.00 0.00 3.35
38 39 1.898472 CTCTCCTCCTTTGTCAGCAGA 59.102 52.381 0.00 0.00 0.00 4.26
39 40 1.898472 TCTCTCCTCCTTTGTCAGCAG 59.102 52.381 0.00 0.00 0.00 4.24
40 41 2.015456 TCTCTCCTCCTTTGTCAGCA 57.985 50.000 0.00 0.00 0.00 4.41
41 42 2.354604 CCTTCTCTCCTCCTTTGTCAGC 60.355 54.545 0.00 0.00 0.00 4.26
42 43 2.354604 GCCTTCTCTCCTCCTTTGTCAG 60.355 54.545 0.00 0.00 0.00 3.51
43 44 1.625818 GCCTTCTCTCCTCCTTTGTCA 59.374 52.381 0.00 0.00 0.00 3.58
44 45 1.625818 TGCCTTCTCTCCTCCTTTGTC 59.374 52.381 0.00 0.00 0.00 3.18
45 46 1.734655 TGCCTTCTCTCCTCCTTTGT 58.265 50.000 0.00 0.00 0.00 2.83
46 47 2.867109 TTGCCTTCTCTCCTCCTTTG 57.133 50.000 0.00 0.00 0.00 2.77
47 48 2.040947 CCTTTGCCTTCTCTCCTCCTTT 59.959 50.000 0.00 0.00 0.00 3.11
48 49 1.632920 CCTTTGCCTTCTCTCCTCCTT 59.367 52.381 0.00 0.00 0.00 3.36
49 50 1.203364 TCCTTTGCCTTCTCTCCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
50 51 1.280457 TCCTTTGCCTTCTCTCCTCC 58.720 55.000 0.00 0.00 0.00 4.30
51 52 2.355615 CCTTCCTTTGCCTTCTCTCCTC 60.356 54.545 0.00 0.00 0.00 3.71
52 53 1.632920 CCTTCCTTTGCCTTCTCTCCT 59.367 52.381 0.00 0.00 0.00 3.69
53 54 1.630878 TCCTTCCTTTGCCTTCTCTCC 59.369 52.381 0.00 0.00 0.00 3.71
54 55 2.569404 TCTCCTTCCTTTGCCTTCTCTC 59.431 50.000 0.00 0.00 0.00 3.20
55 56 2.571202 CTCTCCTTCCTTTGCCTTCTCT 59.429 50.000 0.00 0.00 0.00 3.10
56 57 2.569404 TCTCTCCTTCCTTTGCCTTCTC 59.431 50.000 0.00 0.00 0.00 2.87
57 58 2.571202 CTCTCTCCTTCCTTTGCCTTCT 59.429 50.000 0.00 0.00 0.00 2.85
58 59 2.304470 ACTCTCTCCTTCCTTTGCCTTC 59.696 50.000 0.00 0.00 0.00 3.46
59 60 2.304470 GACTCTCTCCTTCCTTTGCCTT 59.696 50.000 0.00 0.00 0.00 4.35
60 61 1.905894 GACTCTCTCCTTCCTTTGCCT 59.094 52.381 0.00 0.00 0.00 4.75
61 62 1.625818 TGACTCTCTCCTTCCTTTGCC 59.374 52.381 0.00 0.00 0.00 4.52
62 63 3.269178 CATGACTCTCTCCTTCCTTTGC 58.731 50.000 0.00 0.00 0.00 3.68
63 64 3.269178 GCATGACTCTCTCCTTCCTTTG 58.731 50.000 0.00 0.00 0.00 2.77
64 65 2.238395 GGCATGACTCTCTCCTTCCTTT 59.762 50.000 0.00 0.00 0.00 3.11
65 66 1.836802 GGCATGACTCTCTCCTTCCTT 59.163 52.381 0.00 0.00 0.00 3.36
66 67 1.494960 GGCATGACTCTCTCCTTCCT 58.505 55.000 0.00 0.00 0.00 3.36
67 68 0.103937 CGGCATGACTCTCTCCTTCC 59.896 60.000 0.00 0.00 0.00 3.46
68 69 0.529555 GCGGCATGACTCTCTCCTTC 60.530 60.000 0.00 0.00 0.00 3.46
69 70 0.975040 AGCGGCATGACTCTCTCCTT 60.975 55.000 1.45 0.00 0.00 3.36
70 71 1.381056 AGCGGCATGACTCTCTCCT 60.381 57.895 1.45 0.00 0.00 3.69
71 72 1.227205 CAGCGGCATGACTCTCTCC 60.227 63.158 1.45 0.00 0.00 3.71
72 73 0.805322 CACAGCGGCATGACTCTCTC 60.805 60.000 1.45 0.00 0.00 3.20
73 74 1.217511 CACAGCGGCATGACTCTCT 59.782 57.895 1.45 0.00 0.00 3.10
74 75 2.459442 GCACAGCGGCATGACTCTC 61.459 63.158 1.45 0.00 0.00 3.20
75 76 2.435586 GCACAGCGGCATGACTCT 60.436 61.111 1.45 0.00 0.00 3.24
76 77 2.743538 TGCACAGCGGCATGACTC 60.744 61.111 1.45 0.00 39.25 3.36
77 78 3.052082 GTGCACAGCGGCATGACT 61.052 61.111 13.17 0.00 46.92 3.41
78 79 3.031964 GAGTGCACAGCGGCATGAC 62.032 63.158 21.04 0.00 46.92 3.06
79 80 2.743538 GAGTGCACAGCGGCATGA 60.744 61.111 21.04 0.00 46.92 3.07
80 81 3.051479 TGAGTGCACAGCGGCATG 61.051 61.111 21.04 0.77 46.92 4.06
81 82 3.052082 GTGAGTGCACAGCGGCAT 61.052 61.111 21.04 0.00 46.92 4.40
89 90 1.664965 GGGACGACAGTGAGTGCAC 60.665 63.158 9.40 9.40 45.49 4.57
90 91 2.734591 GGGACGACAGTGAGTGCA 59.265 61.111 14.18 0.00 0.00 4.57
91 92 2.048127 GGGGACGACAGTGAGTGC 60.048 66.667 0.00 1.59 0.00 4.40
103 104 1.451936 CAGATCCAATCCCGGGGAC 59.548 63.158 23.50 4.23 35.67 4.46
104 105 2.452064 GCAGATCCAATCCCGGGGA 61.452 63.158 23.50 20.15 37.64 4.81
105 106 2.113986 GCAGATCCAATCCCGGGG 59.886 66.667 23.50 6.77 0.00 5.73
106 107 2.113986 GGCAGATCCAATCCCGGG 59.886 66.667 16.85 16.85 34.01 5.73
107 108 2.281070 CGGCAGATCCAATCCCGG 60.281 66.667 0.00 0.00 35.54 5.73
108 109 2.281070 CCGGCAGATCCAATCCCG 60.281 66.667 0.00 0.00 38.71 5.14
109 110 2.595754 GCCGGCAGATCCAATCCC 60.596 66.667 24.80 0.00 34.01 3.85
110 111 2.974698 CGCCGGCAGATCCAATCC 60.975 66.667 28.98 0.00 34.01 3.01
111 112 3.654020 GCGCCGGCAGATCCAATC 61.654 66.667 28.98 0.81 39.62 2.67
144 145 4.093952 TCGAAGCCCGACGACGAC 62.094 66.667 9.28 0.22 43.23 4.34
171 172 4.742201 TCTCTCCGTTGCAGCCGC 62.742 66.667 0.00 0.00 39.24 6.53
172 173 2.048222 TTCTCTCCGTTGCAGCCG 60.048 61.111 0.00 0.00 0.00 5.52
173 174 0.739112 CTCTTCTCTCCGTTGCAGCC 60.739 60.000 0.00 0.00 0.00 4.85
174 175 0.244994 TCTCTTCTCTCCGTTGCAGC 59.755 55.000 0.00 0.00 0.00 5.25
175 176 1.815613 TCTCTCTTCTCTCCGTTGCAG 59.184 52.381 0.00 0.00 0.00 4.41
176 177 1.911057 TCTCTCTTCTCTCCGTTGCA 58.089 50.000 0.00 0.00 0.00 4.08
177 178 2.481104 CCATCTCTCTTCTCTCCGTTGC 60.481 54.545 0.00 0.00 0.00 4.17
178 179 3.020274 TCCATCTCTCTTCTCTCCGTTG 58.980 50.000 0.00 0.00 0.00 4.10
179 180 3.374042 TCCATCTCTCTTCTCTCCGTT 57.626 47.619 0.00 0.00 0.00 4.44
180 181 3.374042 TTCCATCTCTCTTCTCTCCGT 57.626 47.619 0.00 0.00 0.00 4.69
181 182 3.068024 CCTTTCCATCTCTCTTCTCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
182 183 3.387699 CCCTTTCCATCTCTCTTCTCTCC 59.612 52.174 0.00 0.00 0.00 3.71
183 184 3.387699 CCCCTTTCCATCTCTCTTCTCTC 59.612 52.174 0.00 0.00 0.00 3.20
184 185 3.013417 TCCCCTTTCCATCTCTCTTCTCT 59.987 47.826 0.00 0.00 0.00 3.10
185 186 3.379452 TCCCCTTTCCATCTCTCTTCTC 58.621 50.000 0.00 0.00 0.00 2.87
186 187 3.498614 TCCCCTTTCCATCTCTCTTCT 57.501 47.619 0.00 0.00 0.00 2.85
187 188 4.576330 TTTCCCCTTTCCATCTCTCTTC 57.424 45.455 0.00 0.00 0.00 2.87
188 189 4.603610 TCTTTTCCCCTTTCCATCTCTCTT 59.396 41.667 0.00 0.00 0.00 2.85
189 190 4.179133 TCTTTTCCCCTTTCCATCTCTCT 58.821 43.478 0.00 0.00 0.00 3.10
190 191 4.226168 TCTCTTTTCCCCTTTCCATCTCTC 59.774 45.833 0.00 0.00 0.00 3.20
191 192 4.179133 TCTCTTTTCCCCTTTCCATCTCT 58.821 43.478 0.00 0.00 0.00 3.10
192 193 4.576330 TCTCTTTTCCCCTTTCCATCTC 57.424 45.455 0.00 0.00 0.00 2.75
193 194 5.973124 TCTATCTCTTTTCCCCTTTCCATCT 59.027 40.000 0.00 0.00 0.00 2.90
194 195 6.253946 TCTATCTCTTTTCCCCTTTCCATC 57.746 41.667 0.00 0.00 0.00 3.51
195 196 6.855375 ATCTATCTCTTTTCCCCTTTCCAT 57.145 37.500 0.00 0.00 0.00 3.41
196 197 7.139619 TCTATCTATCTCTTTTCCCCTTTCCA 58.860 38.462 0.00 0.00 0.00 3.53
197 198 7.619512 TCTATCTATCTCTTTTCCCCTTTCC 57.380 40.000 0.00 0.00 0.00 3.13
198 199 7.158697 GCTCTATCTATCTCTTTTCCCCTTTC 58.841 42.308 0.00 0.00 0.00 2.62
199 200 6.239458 CGCTCTATCTATCTCTTTTCCCCTTT 60.239 42.308 0.00 0.00 0.00 3.11
200 201 5.245075 CGCTCTATCTATCTCTTTTCCCCTT 59.755 44.000 0.00 0.00 0.00 3.95
201 202 4.770010 CGCTCTATCTATCTCTTTTCCCCT 59.230 45.833 0.00 0.00 0.00 4.79
202 203 4.081917 CCGCTCTATCTATCTCTTTTCCCC 60.082 50.000 0.00 0.00 0.00 4.81
203 204 4.767928 TCCGCTCTATCTATCTCTTTTCCC 59.232 45.833 0.00 0.00 0.00 3.97
204 205 5.708230 TCTCCGCTCTATCTATCTCTTTTCC 59.292 44.000 0.00 0.00 0.00 3.13
205 206 6.811253 TCTCCGCTCTATCTATCTCTTTTC 57.189 41.667 0.00 0.00 0.00 2.29
206 207 7.589958 TTTCTCCGCTCTATCTATCTCTTTT 57.410 36.000 0.00 0.00 0.00 2.27
207 208 7.589958 TTTTCTCCGCTCTATCTATCTCTTT 57.410 36.000 0.00 0.00 0.00 2.52
208 209 7.430441 GTTTTTCTCCGCTCTATCTATCTCTT 58.570 38.462 0.00 0.00 0.00 2.85
209 210 6.293735 CGTTTTTCTCCGCTCTATCTATCTCT 60.294 42.308 0.00 0.00 0.00 3.10
210 211 5.854338 CGTTTTTCTCCGCTCTATCTATCTC 59.146 44.000 0.00 0.00 0.00 2.75
211 212 5.299782 ACGTTTTTCTCCGCTCTATCTATCT 59.700 40.000 0.00 0.00 0.00 1.98
212 213 5.521544 ACGTTTTTCTCCGCTCTATCTATC 58.478 41.667 0.00 0.00 0.00 2.08
213 214 5.517322 ACGTTTTTCTCCGCTCTATCTAT 57.483 39.130 0.00 0.00 0.00 1.98
214 215 4.978083 ACGTTTTTCTCCGCTCTATCTA 57.022 40.909 0.00 0.00 0.00 1.98
215 216 3.870633 ACGTTTTTCTCCGCTCTATCT 57.129 42.857 0.00 0.00 0.00 1.98
216 217 4.490479 CGAAACGTTTTTCTCCGCTCTATC 60.490 45.833 15.89 0.00 39.29 2.08
217 218 3.367025 CGAAACGTTTTTCTCCGCTCTAT 59.633 43.478 15.89 0.00 39.29 1.98
218 219 2.727798 CGAAACGTTTTTCTCCGCTCTA 59.272 45.455 15.89 0.00 39.29 2.43
219 220 1.525619 CGAAACGTTTTTCTCCGCTCT 59.474 47.619 15.89 0.00 39.29 4.09
220 221 1.933457 CGAAACGTTTTTCTCCGCTC 58.067 50.000 15.89 0.00 39.29 5.03
221 222 0.041576 GCGAAACGTTTTTCTCCGCT 60.042 50.000 26.85 0.33 39.29 5.52
222 223 1.318325 CGCGAAACGTTTTTCTCCGC 61.318 55.000 25.29 25.29 39.29 5.54
223 224 0.720173 CCGCGAAACGTTTTTCTCCG 60.720 55.000 15.89 14.19 39.29 4.63
224 225 0.385098 CCCGCGAAACGTTTTTCTCC 60.385 55.000 15.89 0.55 39.29 3.71
225 226 0.995234 GCCCGCGAAACGTTTTTCTC 60.995 55.000 15.89 0.91 39.29 2.87
226 227 1.009335 GCCCGCGAAACGTTTTTCT 60.009 52.632 15.89 0.00 39.29 2.52
227 228 2.012414 GGCCCGCGAAACGTTTTTC 61.012 57.895 15.89 8.97 41.42 2.29
228 229 2.026445 GGCCCGCGAAACGTTTTT 59.974 55.556 15.89 0.00 41.42 1.94
229 230 4.316571 CGGCCCGCGAAACGTTTT 62.317 61.111 15.89 0.00 41.42 2.43
256 257 2.329539 AATCTCGCGGATGTGGGCAT 62.330 55.000 6.13 0.00 38.18 4.40
257 258 2.535485 AAATCTCGCGGATGTGGGCA 62.535 55.000 6.13 0.00 34.45 5.36
258 259 1.376609 AAAATCTCGCGGATGTGGGC 61.377 55.000 6.13 0.00 34.45 5.36
259 260 0.657840 GAAAATCTCGCGGATGTGGG 59.342 55.000 6.13 0.00 34.45 4.61
260 261 0.301687 CGAAAATCTCGCGGATGTGG 59.698 55.000 6.13 0.00 41.49 4.17
261 262 3.786955 CGAAAATCTCGCGGATGTG 57.213 52.632 6.13 0.00 41.49 3.21
287 288 1.226295 GTCCAAAACGCGGCTATGC 60.226 57.895 12.47 0.00 0.00 3.14
288 289 1.060308 CGTCCAAAACGCGGCTATG 59.940 57.895 12.47 3.59 45.76 2.23
289 290 3.481661 CGTCCAAAACGCGGCTAT 58.518 55.556 12.47 0.00 45.76 2.97
302 303 6.131607 GCCAGATGCTTCGAATATTCGTCC 62.132 50.000 31.01 21.56 43.35 4.79
303 304 3.120854 GCCAGATGCTTCGAATATTCGTC 60.121 47.826 31.01 22.31 43.35 4.20
304 305 2.802816 GCCAGATGCTTCGAATATTCGT 59.197 45.455 31.01 16.07 43.35 3.85
305 306 2.158449 GGCCAGATGCTTCGAATATTCG 59.842 50.000 27.99 27.99 45.36 3.34
306 307 3.141398 TGGCCAGATGCTTCGAATATTC 58.859 45.455 0.00 5.30 40.92 1.75
307 308 3.213206 TGGCCAGATGCTTCGAATATT 57.787 42.857 0.00 0.00 40.92 1.28
308 309 2.936919 TGGCCAGATGCTTCGAATAT 57.063 45.000 0.00 0.00 40.92 1.28
309 310 2.550855 GGATGGCCAGATGCTTCGAATA 60.551 50.000 13.05 0.00 40.92 1.75
310 311 1.602311 GATGGCCAGATGCTTCGAAT 58.398 50.000 13.05 0.00 40.92 3.34
311 312 0.464373 GGATGGCCAGATGCTTCGAA 60.464 55.000 13.05 0.00 40.92 3.71
312 313 1.146930 GGATGGCCAGATGCTTCGA 59.853 57.895 13.05 0.00 40.92 3.71
313 314 1.895707 GGGATGGCCAGATGCTTCG 60.896 63.158 13.05 0.00 40.92 3.79
314 315 0.767375 TAGGGATGGCCAGATGCTTC 59.233 55.000 13.05 1.66 40.92 3.86
315 316 1.353694 GATAGGGATGGCCAGATGCTT 59.646 52.381 13.05 0.00 40.92 3.91
316 317 0.990374 GATAGGGATGGCCAGATGCT 59.010 55.000 13.05 0.00 40.92 3.79
317 318 0.034670 GGATAGGGATGGCCAGATGC 60.035 60.000 13.05 0.00 40.16 3.91
318 319 0.622665 GGGATAGGGATGGCCAGATG 59.377 60.000 13.05 0.00 35.15 2.90
319 320 0.196888 TGGGATAGGGATGGCCAGAT 59.803 55.000 13.05 0.00 35.15 2.90
320 321 0.029163 TTGGGATAGGGATGGCCAGA 60.029 55.000 13.05 0.00 35.15 3.86
321 322 0.111253 GTTGGGATAGGGATGGCCAG 59.889 60.000 13.05 0.00 35.15 4.85
322 323 0.328450 AGTTGGGATAGGGATGGCCA 60.328 55.000 8.56 8.56 35.15 5.36
323 324 0.402121 GAGTTGGGATAGGGATGGCC 59.598 60.000 0.00 0.00 0.00 5.36
324 325 0.035458 CGAGTTGGGATAGGGATGGC 59.965 60.000 0.00 0.00 0.00 4.40
325 326 1.344763 GACGAGTTGGGATAGGGATGG 59.655 57.143 0.00 0.00 0.00 3.51
326 327 1.344763 GGACGAGTTGGGATAGGGATG 59.655 57.143 0.00 0.00 0.00 3.51
327 328 1.718280 GGACGAGTTGGGATAGGGAT 58.282 55.000 0.00 0.00 0.00 3.85
328 329 0.754217 CGGACGAGTTGGGATAGGGA 60.754 60.000 0.00 0.00 0.00 4.20
329 330 1.041447 ACGGACGAGTTGGGATAGGG 61.041 60.000 0.00 0.00 0.00 3.53
330 331 0.102481 CACGGACGAGTTGGGATAGG 59.898 60.000 0.00 0.00 0.00 2.57
331 332 1.100510 TCACGGACGAGTTGGGATAG 58.899 55.000 0.00 0.00 0.00 2.08
332 333 1.203052 GTTCACGGACGAGTTGGGATA 59.797 52.381 0.00 0.00 0.00 2.59
333 334 0.037605 GTTCACGGACGAGTTGGGAT 60.038 55.000 0.00 0.00 0.00 3.85
334 335 1.364901 GTTCACGGACGAGTTGGGA 59.635 57.895 0.00 0.00 0.00 4.37
335 336 1.666872 GGTTCACGGACGAGTTGGG 60.667 63.158 0.00 0.00 0.00 4.12
336 337 0.531090 TTGGTTCACGGACGAGTTGG 60.531 55.000 0.00 0.00 0.00 3.77
337 338 1.004292 GTTTGGTTCACGGACGAGTTG 60.004 52.381 0.00 0.00 0.00 3.16
338 339 1.292992 GTTTGGTTCACGGACGAGTT 58.707 50.000 0.00 0.00 0.00 3.01
339 340 0.872881 CGTTTGGTTCACGGACGAGT 60.873 55.000 0.00 0.00 35.90 4.18
340 341 0.595567 TCGTTTGGTTCACGGACGAG 60.596 55.000 0.00 0.00 37.76 4.18
341 342 0.871163 GTCGTTTGGTTCACGGACGA 60.871 55.000 0.00 0.00 40.03 4.20
342 343 0.872881 AGTCGTTTGGTTCACGGACG 60.873 55.000 0.00 0.00 38.23 4.79
343 344 0.580104 CAGTCGTTTGGTTCACGGAC 59.420 55.000 0.00 0.00 38.23 4.79
344 345 0.176219 ACAGTCGTTTGGTTCACGGA 59.824 50.000 0.00 0.00 38.23 4.69
345 346 0.580104 GACAGTCGTTTGGTTCACGG 59.420 55.000 0.00 0.00 38.23 4.94
346 347 1.282817 TGACAGTCGTTTGGTTCACG 58.717 50.000 0.00 0.00 39.08 4.35
347 348 2.223377 GGATGACAGTCGTTTGGTTCAC 59.777 50.000 0.00 0.00 0.00 3.18
348 349 2.158885 TGGATGACAGTCGTTTGGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
349 350 2.223377 GTGGATGACAGTCGTTTGGTTC 59.777 50.000 0.00 0.00 0.00 3.62
350 351 2.218603 GTGGATGACAGTCGTTTGGTT 58.781 47.619 0.00 0.00 0.00 3.67
351 352 1.872237 CGTGGATGACAGTCGTTTGGT 60.872 52.381 0.00 0.00 0.00 3.67
352 353 0.790207 CGTGGATGACAGTCGTTTGG 59.210 55.000 0.00 0.00 0.00 3.28
353 354 1.497991 ACGTGGATGACAGTCGTTTG 58.502 50.000 0.00 0.00 0.00 2.93
354 355 3.374220 TTACGTGGATGACAGTCGTTT 57.626 42.857 0.00 0.00 36.24 3.60
355 356 3.374220 TTTACGTGGATGACAGTCGTT 57.626 42.857 0.00 0.00 36.24 3.85
356 357 3.374220 TTTTACGTGGATGACAGTCGT 57.626 42.857 0.00 0.00 38.30 4.34
374 375 3.806949 TGGACAGGGATAGCTGTTTTT 57.193 42.857 0.00 0.00 33.50 1.94
375 376 3.181434 TGTTGGACAGGGATAGCTGTTTT 60.181 43.478 0.00 0.00 33.50 2.43
376 377 2.375174 TGTTGGACAGGGATAGCTGTTT 59.625 45.455 0.00 0.00 33.50 2.83
377 378 1.985159 TGTTGGACAGGGATAGCTGTT 59.015 47.619 0.00 0.00 33.50 3.16
378 379 1.556911 CTGTTGGACAGGGATAGCTGT 59.443 52.381 0.00 0.00 42.35 4.40
379 380 1.833630 TCTGTTGGACAGGGATAGCTG 59.166 52.381 8.11 0.00 45.94 4.24
380 381 2.254152 TCTGTTGGACAGGGATAGCT 57.746 50.000 8.11 0.00 45.94 3.32
386 387 1.765314 CTATCCCTCTGTTGGACAGGG 59.235 57.143 8.11 4.69 46.17 4.45
387 388 1.139853 GCTATCCCTCTGTTGGACAGG 59.860 57.143 8.11 0.14 45.94 4.00
389 390 1.204146 GGCTATCCCTCTGTTGGACA 58.796 55.000 0.00 0.00 33.94 4.02
401 402 1.322442 GTTTGGATGCTGGGCTATCC 58.678 55.000 11.31 11.31 42.56 2.59
402 403 0.947244 CGTTTGGATGCTGGGCTATC 59.053 55.000 0.00 0.00 0.00 2.08
403 404 1.103398 GCGTTTGGATGCTGGGCTAT 61.103 55.000 0.00 0.00 34.88 2.97
404 405 1.748879 GCGTTTGGATGCTGGGCTA 60.749 57.895 0.00 0.00 34.88 3.93
405 406 3.064324 GCGTTTGGATGCTGGGCT 61.064 61.111 0.00 0.00 34.88 5.19
406 407 2.618312 GATGCGTTTGGATGCTGGGC 62.618 60.000 0.00 0.00 38.64 5.36
407 408 1.434696 GATGCGTTTGGATGCTGGG 59.565 57.895 0.00 0.00 38.64 4.45
408 409 1.033746 AGGATGCGTTTGGATGCTGG 61.034 55.000 0.00 0.00 42.85 4.85
409 410 1.667236 TAGGATGCGTTTGGATGCTG 58.333 50.000 1.29 0.00 44.15 4.41
410 411 2.017049 GTTAGGATGCGTTTGGATGCT 58.983 47.619 0.00 0.00 46.09 3.79
411 412 1.268032 CGTTAGGATGCGTTTGGATGC 60.268 52.381 0.00 0.00 38.31 3.91
412 413 1.268032 GCGTTAGGATGCGTTTGGATG 60.268 52.381 0.00 0.00 0.00 3.51
413 414 1.014352 GCGTTAGGATGCGTTTGGAT 58.986 50.000 0.00 0.00 0.00 3.41
414 415 0.320858 TGCGTTAGGATGCGTTTGGA 60.321 50.000 0.00 0.00 40.79 3.53
415 416 0.179200 GTGCGTTAGGATGCGTTTGG 60.179 55.000 0.00 0.00 40.79 3.28
416 417 0.518355 CGTGCGTTAGGATGCGTTTG 60.518 55.000 0.00 0.00 40.79 2.93
417 418 0.668096 TCGTGCGTTAGGATGCGTTT 60.668 50.000 0.00 0.00 40.79 3.60
418 419 0.668096 TTCGTGCGTTAGGATGCGTT 60.668 50.000 0.00 0.00 40.79 4.84
419 420 0.668096 TTTCGTGCGTTAGGATGCGT 60.668 50.000 0.00 0.00 40.79 5.24
420 421 0.247145 GTTTCGTGCGTTAGGATGCG 60.247 55.000 0.00 0.00 40.79 4.73
421 422 0.247145 CGTTTCGTGCGTTAGGATGC 60.247 55.000 0.00 0.00 38.31 3.91
424 425 0.668096 ATGCGTTTCGTGCGTTAGGA 60.668 50.000 0.00 0.00 34.24 2.94
507 508 4.442454 GAAGGCCGGGAAAGGGGG 62.442 72.222 2.18 0.00 0.00 5.40
508 509 4.442454 GGAAGGCCGGGAAAGGGG 62.442 72.222 2.18 0.00 0.00 4.79
509 510 4.442454 GGGAAGGCCGGGAAAGGG 62.442 72.222 2.18 0.00 33.83 3.95
510 511 4.442454 GGGGAAGGCCGGGAAAGG 62.442 72.222 2.18 0.00 33.83 3.11
511 512 4.442454 GGGGGAAGGCCGGGAAAG 62.442 72.222 2.18 0.00 33.83 2.62
541 542 3.227276 CCAGGCTACGCGGGAGAT 61.227 66.667 12.47 0.00 0.00 2.75
753 1059 0.716108 CAGCGAGAAAGTTACCAGCG 59.284 55.000 0.00 0.00 0.00 5.18
762 1068 3.139077 ACCAAAACTACCAGCGAGAAAG 58.861 45.455 0.00 0.00 0.00 2.62
775 1081 4.469586 ACCAATTCACCAAAGACCAAAACT 59.530 37.500 0.00 0.00 0.00 2.66
776 1082 4.570369 CACCAATTCACCAAAGACCAAAAC 59.430 41.667 0.00 0.00 0.00 2.43
839 1148 8.973378 CCATTTAAATTTCAGTTCAGCGTTTAA 58.027 29.630 0.00 0.00 0.00 1.52
846 1155 9.880157 ATCCATTCCATTTAAATTTCAGTTCAG 57.120 29.630 0.00 0.00 0.00 3.02
884 1193 4.813161 AGCACATTAGACATACAGACATGC 59.187 41.667 0.00 0.00 0.00 4.06
885 1194 6.044682 TCAGCACATTAGACATACAGACATG 58.955 40.000 0.00 0.00 0.00 3.21
919 1236 9.415544 ACTTCTATTTCTGCAAAATGAATCAAC 57.584 29.630 13.65 0.00 0.00 3.18
932 1249 4.681483 GCAAACACCAACTTCTATTTCTGC 59.319 41.667 0.00 0.00 0.00 4.26
972 1289 0.252421 ACTGAGATGGGAGCCAGTGA 60.252 55.000 0.00 0.00 38.32 3.41
1013 1330 1.454663 GGCCATGGGAGAAGCTTCC 60.455 63.158 22.81 13.78 36.46 3.46
1014 1331 1.821332 CGGCCATGGGAGAAGCTTC 60.821 63.158 19.11 19.11 0.00 3.86
1038 1355 0.109342 CCTGGGCTTGTGACTGTCTT 59.891 55.000 9.51 0.00 0.00 3.01
1073 1393 2.122783 TGGGTAGAAGGCGGAAAATG 57.877 50.000 0.00 0.00 0.00 2.32
1079 1399 0.958876 GTTGGTTGGGTAGAAGGCGG 60.959 60.000 0.00 0.00 0.00 6.13
1100 1420 2.408022 GAGGGTCGTCATCGTCGG 59.592 66.667 0.00 0.00 38.33 4.79
1110 1430 4.157817 CGTGTAAACGGAGGGTCG 57.842 61.111 0.00 0.00 0.00 4.79
1128 1448 0.324368 GAGGTGGGGTTTTGGGGATC 60.324 60.000 0.00 0.00 0.00 3.36
1139 1459 4.148825 CCGAAGCTCGAGGTGGGG 62.149 72.222 19.39 17.83 43.74 4.96
1140 1460 4.821589 GCCGAAGCTCGAGGTGGG 62.822 72.222 23.55 23.55 43.74 4.61
1169 1489 3.737172 CTTTGGGCTTCGGCGGTG 61.737 66.667 7.21 0.75 42.91 4.94
1170 1490 3.948719 TCTTTGGGCTTCGGCGGT 61.949 61.111 7.21 0.00 42.91 5.68
1247 1567 1.932511 CAGTCTCCGAGTACGAGTACC 59.067 57.143 9.53 1.78 42.66 3.34
1302 1622 1.900016 GAAGGGCGAAAACCGGGTT 60.900 57.895 6.59 6.59 39.04 4.11
1400 1720 3.392595 CTACGACTCGGACCGCCAC 62.393 68.421 9.66 1.47 0.00 5.01
1440 1760 2.600769 ACCTCCGCTTCCGACAGT 60.601 61.111 0.00 0.00 36.29 3.55
1622 2895 7.056635 ACTCGTTATTCCCTCATCAATCAAAT 58.943 34.615 0.00 0.00 0.00 2.32
1968 3241 1.203287 GCAGGAACAAGGGAATGCTTC 59.797 52.381 0.00 0.00 0.00 3.86
2008 3281 5.251700 AGTTACACCATCTTTCCCTGAGAAT 59.748 40.000 0.00 0.00 33.44 2.40
2506 3779 5.920312 AGAAATATGCGCTTATGTGATTCG 58.080 37.500 15.71 0.00 0.00 3.34
2845 4124 8.515414 ACACCTGTTTGATTAGAGCTTTTATTC 58.485 33.333 0.00 0.00 0.00 1.75
2979 4258 7.487822 AGGAGATGTCTTCTGTCTGAAATTA 57.512 36.000 0.00 0.00 33.74 1.40
3053 4332 5.947228 TGTTTGCAAGAGATAAAGGAGTG 57.053 39.130 0.00 0.00 0.00 3.51
3226 4505 0.524862 CATCACTGTGGCCAAGAAGC 59.475 55.000 7.24 0.00 0.00 3.86
3232 4511 1.151221 ACTTGCATCACTGTGGCCA 59.849 52.632 0.00 0.00 0.00 5.36
3234 4513 1.080974 GCACTTGCATCACTGTGGC 60.081 57.895 8.11 5.03 41.59 5.01
3253 4532 3.703052 GGAACGGAGGGAGTAGATTACAA 59.297 47.826 0.00 0.00 0.00 2.41
3262 4541 4.261411 TCTATTTAGGAACGGAGGGAGT 57.739 45.455 0.00 0.00 0.00 3.85
3263 4542 4.833380 TCATCTATTTAGGAACGGAGGGAG 59.167 45.833 0.00 0.00 0.00 4.30
3264 4543 4.587684 GTCATCTATTTAGGAACGGAGGGA 59.412 45.833 0.00 0.00 0.00 4.20
3265 4544 4.589374 AGTCATCTATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
3267 4546 6.392625 TGAGTCATCTATTTAGGAACGGAG 57.607 41.667 0.00 0.00 0.00 4.63
3268 4547 6.380274 AGTTGAGTCATCTATTTAGGAACGGA 59.620 38.462 1.70 0.00 0.00 4.69
3269 4548 6.574350 AGTTGAGTCATCTATTTAGGAACGG 58.426 40.000 1.70 0.00 0.00 4.44
3270 4549 8.383619 CAAAGTTGAGTCATCTATTTAGGAACG 58.616 37.037 4.14 0.00 0.00 3.95
3271 4550 9.220767 ACAAAGTTGAGTCATCTATTTAGGAAC 57.779 33.333 4.14 0.00 0.00 3.62
3273 4552 9.871238 GTACAAAGTTGAGTCATCTATTTAGGA 57.129 33.333 4.14 0.00 0.00 2.94
3274 4553 9.877178 AGTACAAAGTTGAGTCATCTATTTAGG 57.123 33.333 4.14 0.00 0.00 2.69
3311 4590 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3312 4591 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3313 4592 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3314 4593 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3315 4594 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3316 4595 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3317 4596 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3318 4597 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3319 4598 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3320 4599 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3321 4600 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3322 4601 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3323 4602 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3324 4603 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3325 4604 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3326 4605 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3327 4606 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3328 4607 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3329 4608 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3330 4609 1.345415 GTTGTACTCCCTCCGTTCCAA 59.655 52.381 0.00 0.00 0.00 3.53
3331 4610 0.971386 GTTGTACTCCCTCCGTTCCA 59.029 55.000 0.00 0.00 0.00 3.53
3332 4611 0.248565 GGTTGTACTCCCTCCGTTCC 59.751 60.000 0.00 0.00 0.00 3.62
3333 4612 0.248565 GGGTTGTACTCCCTCCGTTC 59.751 60.000 16.01 0.00 41.58 3.95
3334 4613 2.369654 GGGTTGTACTCCCTCCGTT 58.630 57.895 16.01 0.00 41.58 4.44
3335 4614 4.125239 GGGTTGTACTCCCTCCGT 57.875 61.111 16.01 0.00 41.58 4.69
3340 4619 4.801164 TCTGAGTATAGGGTTGTACTCCC 58.199 47.826 15.67 15.67 43.52 4.30
3341 4620 5.447757 ACTCTGAGTATAGGGTTGTACTCC 58.552 45.833 8.91 0.00 43.52 3.85
3342 4621 6.205270 GCTACTCTGAGTATAGGGTTGTACTC 59.795 46.154 17.27 5.77 44.08 2.59
3343 4622 6.063404 GCTACTCTGAGTATAGGGTTGTACT 58.937 44.000 17.27 0.00 34.37 2.73
3344 4623 5.826737 TGCTACTCTGAGTATAGGGTTGTAC 59.173 44.000 17.27 0.00 32.56 2.90
3345 4624 6.009908 TGCTACTCTGAGTATAGGGTTGTA 57.990 41.667 17.27 1.93 32.56 2.41
3346 4625 4.868268 TGCTACTCTGAGTATAGGGTTGT 58.132 43.478 17.27 0.00 32.56 3.32
3347 4626 4.261825 GCTGCTACTCTGAGTATAGGGTTG 60.262 50.000 17.27 5.91 32.56 3.77
3348 4627 3.892588 GCTGCTACTCTGAGTATAGGGTT 59.107 47.826 17.27 0.00 32.56 4.11
3349 4628 3.139397 AGCTGCTACTCTGAGTATAGGGT 59.861 47.826 17.27 12.18 35.14 4.34
3350 4629 3.761897 AGCTGCTACTCTGAGTATAGGG 58.238 50.000 17.27 7.57 29.08 3.53
3351 4630 4.394920 GCTAGCTGCTACTCTGAGTATAGG 59.605 50.000 17.27 7.91 38.95 2.57
3352 4631 5.545658 GCTAGCTGCTACTCTGAGTATAG 57.454 47.826 17.27 17.65 38.95 1.31
3403 4682 3.072211 ACACATCTCATGCAACTCACAG 58.928 45.455 0.00 0.00 0.00 3.66
3462 4772 7.115378 CCAAGAAATGCTGACAAACAATTAGAC 59.885 37.037 0.00 0.00 0.00 2.59
3488 4798 8.642020 CAAGATAAAATTACTTCAAACAGCAGC 58.358 33.333 0.00 0.00 0.00 5.25
3552 4869 4.771114 TTGTCTTTCTCTTCACCCAGAA 57.229 40.909 0.00 0.00 34.41 3.02
3554 4871 5.767168 AGAAATTGTCTTTCTCTTCACCCAG 59.233 40.000 0.00 0.00 33.86 4.45
3595 4912 0.523335 CTGTATTTTTCCAGCGCGGC 60.523 55.000 8.83 0.00 33.14 6.53
3596 4913 1.083489 TCTGTATTTTTCCAGCGCGG 58.917 50.000 8.83 11.37 0.00 6.46
3597 4914 3.405170 AATCTGTATTTTTCCAGCGCG 57.595 42.857 0.00 0.00 0.00 6.86
3606 4923 2.341168 CGCGCGCAAAAATCTGTATTTT 59.659 40.909 32.61 0.00 45.20 1.82
3607 4924 1.910819 CGCGCGCAAAAATCTGTATTT 59.089 42.857 32.61 0.00 36.87 1.40
3608 4925 1.534028 CGCGCGCAAAAATCTGTATT 58.466 45.000 32.61 0.00 0.00 1.89
3609 4926 0.861450 GCGCGCGCAAAAATCTGTAT 60.861 50.000 46.11 0.00 41.49 2.29
3610 4927 1.511043 GCGCGCGCAAAAATCTGTA 60.511 52.632 46.11 0.00 41.49 2.74
3611 4928 2.800746 GCGCGCGCAAAAATCTGT 60.801 55.556 46.11 0.00 41.49 3.41
3650 4967 4.593864 GATGCCGTCTCGCCCTCC 62.594 72.222 0.00 0.00 0.00 4.30
3651 4968 4.933064 CGATGCCGTCTCGCCCTC 62.933 72.222 0.00 0.00 0.00 4.30
3669 4986 2.349648 CACGAAATAAGCGGCGCG 60.350 61.111 27.59 12.84 0.00 6.86
3670 4987 2.647791 GCACGAAATAAGCGGCGC 60.648 61.111 26.86 26.86 0.00 6.53
3675 4992 1.226295 GTGGGCGCACGAAATAAGC 60.226 57.895 18.81 0.00 0.00 3.09
3676 4993 0.802494 AAGTGGGCGCACGAAATAAG 59.198 50.000 25.95 0.00 0.00 1.73
3677 4994 0.800012 GAAGTGGGCGCACGAAATAA 59.200 50.000 25.95 0.00 0.00 1.40
3678 4995 1.022451 GGAAGTGGGCGCACGAAATA 61.022 55.000 25.95 0.00 0.00 1.40
3679 4996 2.332654 GGAAGTGGGCGCACGAAAT 61.333 57.895 25.95 14.79 0.00 2.17
3680 4997 2.975799 GGAAGTGGGCGCACGAAA 60.976 61.111 25.95 0.00 0.00 3.46
3691 5008 3.838795 GTGTAGCGCGCGGAAGTG 61.839 66.667 33.06 1.90 46.39 3.16
3692 5009 4.351938 TGTGTAGCGCGCGGAAGT 62.352 61.111 33.06 10.67 0.00 3.01
3693 5010 3.838795 GTGTGTAGCGCGCGGAAG 61.839 66.667 33.06 3.25 0.00 3.46
3694 5011 4.351938 AGTGTGTAGCGCGCGGAA 62.352 61.111 33.06 12.96 0.00 4.30
3695 5012 4.771356 GAGTGTGTAGCGCGCGGA 62.771 66.667 33.06 15.73 0.00 5.54
3698 5015 3.241059 CTCGAGTGTGTAGCGCGC 61.241 66.667 26.66 26.66 0.00 6.86
3699 5016 3.241059 GCTCGAGTGTGTAGCGCG 61.241 66.667 15.13 0.00 0.00 6.86
3702 5019 2.881352 GGCGCTCGAGTGTGTAGC 60.881 66.667 25.72 15.00 0.00 3.58
3703 5020 2.202623 GGGCGCTCGAGTGTGTAG 60.203 66.667 25.72 6.79 0.00 2.74
3704 5021 2.675423 AGGGCGCTCGAGTGTGTA 60.675 61.111 25.72 0.00 0.00 2.90
3705 5022 4.057428 GAGGGCGCTCGAGTGTGT 62.057 66.667 25.72 11.65 0.00 3.72
3767 5084 3.365291 TCGGGTGAATTCGCCGGAG 62.365 63.158 32.76 24.35 46.44 4.63
3771 5088 1.153249 TCCATCGGGTGAATTCGCC 60.153 57.895 26.87 26.87 45.51 5.54
3772 5089 1.762222 CGTCCATCGGGTGAATTCGC 61.762 60.000 10.64 10.64 35.71 4.70
3773 5090 2.297625 CGTCCATCGGGTGAATTCG 58.702 57.895 0.04 0.00 35.71 3.34
3793 5110 4.473520 AAGGGGATGTCAGCGCGG 62.474 66.667 8.83 0.00 0.00 6.46
3794 5111 2.892425 GAAGGGGATGTCAGCGCG 60.892 66.667 0.00 0.00 0.00 6.86
3795 5112 2.109126 GTGAAGGGGATGTCAGCGC 61.109 63.158 0.00 0.00 0.00 5.92
3796 5113 1.450312 GGTGAAGGGGATGTCAGCG 60.450 63.158 0.00 0.00 33.07 5.18
3797 5114 0.107459 GAGGTGAAGGGGATGTCAGC 60.107 60.000 0.00 0.00 41.51 4.26
3798 5115 1.577736 AGAGGTGAAGGGGATGTCAG 58.422 55.000 0.00 0.00 0.00 3.51
3799 5116 1.909302 GAAGAGGTGAAGGGGATGTCA 59.091 52.381 0.00 0.00 0.00 3.58
3800 5117 1.210722 GGAAGAGGTGAAGGGGATGTC 59.789 57.143 0.00 0.00 0.00 3.06
3801 5118 1.203492 AGGAAGAGGTGAAGGGGATGT 60.203 52.381 0.00 0.00 0.00 3.06
3802 5119 1.589414 AGGAAGAGGTGAAGGGGATG 58.411 55.000 0.00 0.00 0.00 3.51
3803 5120 2.045885 TGTAGGAAGAGGTGAAGGGGAT 59.954 50.000 0.00 0.00 0.00 3.85
3804 5121 1.435563 TGTAGGAAGAGGTGAAGGGGA 59.564 52.381 0.00 0.00 0.00 4.81
3805 5122 1.555533 GTGTAGGAAGAGGTGAAGGGG 59.444 57.143 0.00 0.00 0.00 4.79
3806 5123 1.555533 GGTGTAGGAAGAGGTGAAGGG 59.444 57.143 0.00 0.00 0.00 3.95
3807 5124 1.555533 GGGTGTAGGAAGAGGTGAAGG 59.444 57.143 0.00 0.00 0.00 3.46
3808 5125 1.204941 CGGGTGTAGGAAGAGGTGAAG 59.795 57.143 0.00 0.00 0.00 3.02
3809 5126 1.263356 CGGGTGTAGGAAGAGGTGAA 58.737 55.000 0.00 0.00 0.00 3.18
3810 5127 1.255667 GCGGGTGTAGGAAGAGGTGA 61.256 60.000 0.00 0.00 0.00 4.02
3811 5128 1.218316 GCGGGTGTAGGAAGAGGTG 59.782 63.158 0.00 0.00 0.00 4.00
3812 5129 2.348888 CGCGGGTGTAGGAAGAGGT 61.349 63.158 0.00 0.00 0.00 3.85
3813 5130 2.050350 TCGCGGGTGTAGGAAGAGG 61.050 63.158 6.13 0.00 0.00 3.69
3814 5131 1.139095 GTCGCGGGTGTAGGAAGAG 59.861 63.158 6.13 0.00 0.00 2.85
3815 5132 2.345760 GGTCGCGGGTGTAGGAAGA 61.346 63.158 6.13 0.00 0.00 2.87
3816 5133 2.183555 GGTCGCGGGTGTAGGAAG 59.816 66.667 6.13 0.00 0.00 3.46
3817 5134 3.384532 GGGTCGCGGGTGTAGGAA 61.385 66.667 6.13 0.00 0.00 3.36
3820 5137 3.834799 GAGGGGTCGCGGGTGTAG 61.835 72.222 6.13 0.00 0.00 2.74
3827 5144 4.394712 AAGCAAGGAGGGGTCGCG 62.395 66.667 0.00 0.00 0.00 5.87
3828 5145 2.436824 GAAGCAAGGAGGGGTCGC 60.437 66.667 0.00 0.00 0.00 5.19
3829 5146 2.125512 CGAAGCAAGGAGGGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
3830 5147 0.391793 CTTCGAAGCAAGGAGGGGTC 60.392 60.000 13.09 0.00 0.00 4.46
3831 5148 1.679898 CTTCGAAGCAAGGAGGGGT 59.320 57.895 13.09 0.00 0.00 4.95
3832 5149 4.625800 CTTCGAAGCAAGGAGGGG 57.374 61.111 13.09 0.00 0.00 4.79
3857 5174 0.898326 TGGAAGAGCTGCTGACCGTA 60.898 55.000 7.01 0.00 0.00 4.02
3869 5186 1.836166 TGAATCCCTCAGCTGGAAGAG 59.164 52.381 15.13 3.26 35.03 2.85
3870 5187 1.956869 TGAATCCCTCAGCTGGAAGA 58.043 50.000 15.13 8.39 35.03 2.87
3882 5199 4.010349 ACCGAAAACTGAAGATGAATCCC 58.990 43.478 0.00 0.00 0.00 3.85
3897 5214 2.611224 GCGAAACCTAGAGGACCGAAAA 60.611 50.000 1.60 0.00 38.94 2.29
3898 5215 1.067354 GCGAAACCTAGAGGACCGAAA 60.067 52.381 1.60 0.00 38.94 3.46
3902 5219 0.976590 AGGGCGAAACCTAGAGGACC 60.977 60.000 1.60 0.00 39.65 4.46
3917 5234 1.866853 CTTCCAAAACTGCGGAGGGC 61.867 60.000 9.36 0.00 43.96 5.19
3921 5238 1.452145 GGCACTTCCAAAACTGCGGA 61.452 55.000 0.00 0.00 34.01 5.54
3939 5256 0.385390 AAGCAACAGAAACAAGCCGG 59.615 50.000 0.00 0.00 0.00 6.13
3941 5258 2.869233 TGAAGCAACAGAAACAAGCC 57.131 45.000 0.00 0.00 0.00 4.35
3995 5312 3.177997 ACAAATTCTGCTTTTTGGCGT 57.822 38.095 0.00 0.00 37.19 5.68
4005 5322 5.611796 TCACATGTCTGTACAAATTCTGC 57.388 39.130 0.00 0.00 39.58 4.26
4006 5323 7.747799 GTGAATCACATGTCTGTACAAATTCTG 59.252 37.037 8.74 0.00 39.58 3.02
4055 5372 0.251354 TTGAGGCTCAGACCATCTGC 59.749 55.000 17.91 0.00 43.95 4.26
4081 5398 2.811431 TGTGACCAACATCGGCTAAAAG 59.189 45.455 0.00 0.00 32.36 2.27
4097 5414 0.240945 CCATCCGCCAAAAGTGTGAC 59.759 55.000 0.00 0.00 0.00 3.67
4098 5415 0.109532 TCCATCCGCCAAAAGTGTGA 59.890 50.000 0.00 0.00 0.00 3.58
4102 5419 3.192633 GTGTTAATCCATCCGCCAAAAGT 59.807 43.478 0.00 0.00 0.00 2.66
4110 5427 6.968131 ATCGAATATGTGTTAATCCATCCG 57.032 37.500 0.00 0.00 0.00 4.18
4186 5503 3.114809 CTCTTTGCAACAACATTCGCAA 58.885 40.909 0.00 0.00 42.29 4.85
4190 5507 5.978919 TGATCAACTCTTTGCAACAACATTC 59.021 36.000 0.00 0.00 32.17 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.