Multiple sequence alignment - TraesCS6D01G099900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G099900 chr6D 100.000 3518 0 0 1 3518 62899536 62896019 0.000000e+00 6497.0
1 TraesCS6D01G099900 chr6D 84.624 1821 186 40 288 2060 63123321 63121547 0.000000e+00 1725.0
2 TraesCS6D01G099900 chr6D 99.654 289 1 0 1 289 91173434 91173722 2.400000e-146 529.0
3 TraesCS6D01G099900 chr6D 98.621 290 4 0 1 290 19663069 19663358 6.730000e-142 514.0
4 TraesCS6D01G099900 chr6D 83.210 405 42 9 2169 2547 63121472 63121068 7.230000e-92 348.0
5 TraesCS6D01G099900 chr6A 94.384 2279 104 12 290 2549 80699608 80697335 0.000000e+00 3478.0
6 TraesCS6D01G099900 chr6A 85.232 711 73 16 2657 3340 80697200 80696495 0.000000e+00 702.0
7 TraesCS6D01G099900 chr6A 87.640 89 10 1 3379 3466 80696315 80696227 6.210000e-18 102.0
8 TraesCS6D01G099900 chr6B 91.108 2283 145 30 290 2547 136514737 136512488 0.000000e+00 3038.0
9 TraesCS6D01G099900 chr6B 94.737 1843 80 7 290 2125 136524669 136522837 0.000000e+00 2850.0
10 TraesCS6D01G099900 chr6B 86.322 658 66 15 2664 3304 136512329 136511679 0.000000e+00 695.0
11 TraesCS6D01G099900 chr6B 83.982 668 78 18 2657 3304 136521151 136520493 6.450000e-172 614.0
12 TraesCS6D01G099900 chr6B 95.753 259 10 1 2143 2400 136521804 136521546 1.950000e-112 416.0
13 TraesCS6D01G099900 chr6B 92.063 63 3 2 3405 3466 136511147 136511086 1.740000e-13 87.9
14 TraesCS6D01G099900 chr7D 99.656 291 1 0 1 291 52449825 52450115 1.860000e-147 532.0
15 TraesCS6D01G099900 chr7D 98.671 301 3 1 1 301 616575893 616575594 1.860000e-147 532.0
16 TraesCS6D01G099900 chr7D 98.020 303 4 2 1 303 95070187 95070487 3.110000e-145 525.0
17 TraesCS6D01G099900 chr3D 99.313 291 2 0 1 291 546384111 546384401 8.650000e-146 527.0
18 TraesCS6D01G099900 chr3D 98.980 294 2 1 1 293 54676916 54677209 3.110000e-145 525.0
19 TraesCS6D01G099900 chr3D 98.339 301 2 3 1 299 613845539 613845240 3.110000e-145 525.0
20 TraesCS6D01G099900 chr5D 98.020 303 5 1 1 303 48501088 48501389 3.110000e-145 525.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G099900 chr6D 62896019 62899536 3517 True 6497.000000 6497 100.000000 1 3518 1 chr6D.!!$R1 3517
1 TraesCS6D01G099900 chr6D 63121068 63123321 2253 True 1036.500000 1725 83.917000 288 2547 2 chr6D.!!$R2 2259
2 TraesCS6D01G099900 chr6A 80696227 80699608 3381 True 1427.333333 3478 89.085333 290 3466 3 chr6A.!!$R1 3176
3 TraesCS6D01G099900 chr6B 136520493 136524669 4176 True 1293.333333 2850 91.490667 290 3304 3 chr6B.!!$R2 3014
4 TraesCS6D01G099900 chr6B 136511086 136514737 3651 True 1273.633333 3038 89.831000 290 3466 3 chr6B.!!$R1 3176


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.037160 ATTAAAACGCGTCCCCACCT 59.963 50.000 14.44 0.00 0.00 4.00 F
161 162 0.037605 CCCCACCTTGTCACGAGTAC 60.038 60.000 0.00 0.00 0.00 2.73 F
181 182 0.247185 CGGCCCCACTCGTTTTAGTA 59.753 55.000 0.00 0.00 0.00 1.82 F
204 205 0.806868 TCGCGTACTTTCATCGGAGT 59.193 50.000 5.77 0.00 0.00 3.85 F
259 260 1.001048 TCGACATCAACGAACGGTTCT 60.001 47.619 17.94 3.54 36.49 3.01 F
2225 3311 0.610174 TCGGATGCTTCAACTGCTCT 59.390 50.000 1.64 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2163 2.622064 ATCAGCACCGAATTCTACCC 57.378 50.000 3.52 0.00 0.00 3.69 R
2167 3253 4.546829 AACGGAAGCATAGTCAGGTTAA 57.453 40.909 0.00 0.00 0.00 2.01 R
2184 3270 2.534349 CGTGTTCCTATCATCGAAACGG 59.466 50.000 0.00 0.00 0.00 4.44 R
2225 3311 6.717997 GGTAGTTGGGGTAATTGAAGAAAAGA 59.282 38.462 0.00 0.00 0.00 2.52 R
2337 3423 0.249280 ACATGTCAGACGCGTGTTCA 60.249 50.000 20.70 15.13 32.75 3.18 R
3497 5306 0.101939 GGATACGACCCAGGTTCGTC 59.898 60.000 16.40 2.31 40.70 4.20 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.896979 TGGACTTGGAGGAGAGGG 57.103 61.111 0.00 0.00 0.00 4.30
18 19 1.613630 TGGACTTGGAGGAGAGGGC 60.614 63.158 0.00 0.00 0.00 5.19
19 20 2.726351 GGACTTGGAGGAGAGGGCG 61.726 68.421 0.00 0.00 0.00 6.13
20 21 2.685380 ACTTGGAGGAGAGGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
21 22 2.364317 CTTGGAGGAGAGGGCGGA 60.364 66.667 0.00 0.00 0.00 5.54
22 23 2.364317 TTGGAGGAGAGGGCGGAG 60.364 66.667 0.00 0.00 0.00 4.63
23 24 2.863019 CTTGGAGGAGAGGGCGGAGA 62.863 65.000 0.00 0.00 0.00 3.71
24 25 2.200092 GGAGGAGAGGGCGGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
25 26 2.206536 GGAGGAGAGGGCGGAGATG 61.207 68.421 0.00 0.00 0.00 2.90
26 27 2.123077 AGGAGAGGGCGGAGATGG 60.123 66.667 0.00 0.00 0.00 3.51
27 28 3.934962 GGAGAGGGCGGAGATGGC 61.935 72.222 0.00 0.00 0.00 4.40
35 36 2.355126 CGGAGATGGCCGTCGATG 60.355 66.667 19.32 8.96 46.07 3.84
36 37 2.845550 CGGAGATGGCCGTCGATGA 61.846 63.158 19.32 0.00 46.07 2.92
37 38 1.006805 GGAGATGGCCGTCGATGAG 60.007 63.158 19.32 0.00 0.00 2.90
38 39 1.736586 GAGATGGCCGTCGATGAGT 59.263 57.895 19.32 0.00 0.00 3.41
39 40 0.952280 GAGATGGCCGTCGATGAGTA 59.048 55.000 19.32 0.00 0.00 2.59
40 41 1.337071 GAGATGGCCGTCGATGAGTAA 59.663 52.381 19.32 0.00 0.00 2.24
41 42 1.964223 AGATGGCCGTCGATGAGTAAT 59.036 47.619 19.32 0.00 0.00 1.89
42 43 2.365617 AGATGGCCGTCGATGAGTAATT 59.634 45.455 19.32 0.00 0.00 1.40
43 44 1.934589 TGGCCGTCGATGAGTAATTG 58.065 50.000 6.11 0.00 0.00 2.32
44 45 1.206132 TGGCCGTCGATGAGTAATTGT 59.794 47.619 6.11 0.00 0.00 2.71
45 46 1.593006 GGCCGTCGATGAGTAATTGTG 59.407 52.381 6.11 0.00 0.00 3.33
46 47 1.593006 GCCGTCGATGAGTAATTGTGG 59.407 52.381 6.11 0.00 0.00 4.17
47 48 2.737359 GCCGTCGATGAGTAATTGTGGA 60.737 50.000 6.11 0.00 0.00 4.02
48 49 3.517602 CCGTCGATGAGTAATTGTGGAA 58.482 45.455 6.11 0.00 0.00 3.53
49 50 3.551890 CCGTCGATGAGTAATTGTGGAAG 59.448 47.826 6.11 0.00 0.00 3.46
50 51 3.551890 CGTCGATGAGTAATTGTGGAAGG 59.448 47.826 0.00 0.00 0.00 3.46
51 52 4.504858 GTCGATGAGTAATTGTGGAAGGT 58.495 43.478 0.00 0.00 0.00 3.50
52 53 4.330074 GTCGATGAGTAATTGTGGAAGGTG 59.670 45.833 0.00 0.00 0.00 4.00
53 54 4.020573 TCGATGAGTAATTGTGGAAGGTGT 60.021 41.667 0.00 0.00 0.00 4.16
54 55 5.186215 TCGATGAGTAATTGTGGAAGGTGTA 59.814 40.000 0.00 0.00 0.00 2.90
55 56 5.520288 CGATGAGTAATTGTGGAAGGTGTAG 59.480 44.000 0.00 0.00 0.00 2.74
56 57 4.575885 TGAGTAATTGTGGAAGGTGTAGC 58.424 43.478 0.00 0.00 0.00 3.58
57 58 4.041075 TGAGTAATTGTGGAAGGTGTAGCA 59.959 41.667 0.00 0.00 0.00 3.49
58 59 4.324267 AGTAATTGTGGAAGGTGTAGCAC 58.676 43.478 0.00 0.00 0.00 4.40
67 68 3.508840 GTGTAGCACCATGGCGGC 61.509 66.667 18.72 18.72 39.03 6.53
73 74 3.679738 CACCATGGCGGCGGTTTT 61.680 61.111 13.04 0.00 39.03 2.43
74 75 3.679738 ACCATGGCGGCGGTTTTG 61.680 61.111 13.04 0.00 39.03 2.44
76 77 4.354939 CATGGCGGCGGTTTTGCA 62.355 61.111 9.78 0.00 36.28 4.08
77 78 3.381136 ATGGCGGCGGTTTTGCAT 61.381 55.556 9.78 0.00 36.28 3.96
78 79 2.941616 ATGGCGGCGGTTTTGCATT 61.942 52.632 9.78 0.00 36.28 3.56
79 80 2.809174 GGCGGCGGTTTTGCATTC 60.809 61.111 9.78 0.00 36.28 2.67
80 81 3.171911 GCGGCGGTTTTGCATTCG 61.172 61.111 9.78 0.00 36.28 3.34
81 82 2.558821 CGGCGGTTTTGCATTCGA 59.441 55.556 0.00 0.00 36.28 3.71
82 83 1.795962 CGGCGGTTTTGCATTCGAC 60.796 57.895 0.00 0.00 36.28 4.20
83 84 1.795962 GGCGGTTTTGCATTCGACG 60.796 57.895 0.00 0.00 36.28 5.12
84 85 1.205568 GCGGTTTTGCATTCGACGA 59.794 52.632 0.00 0.00 34.15 4.20
85 86 0.789383 GCGGTTTTGCATTCGACGAG 60.789 55.000 0.00 0.00 34.15 4.18
86 87 0.787787 CGGTTTTGCATTCGACGAGA 59.212 50.000 0.00 0.00 0.00 4.04
87 88 1.201812 CGGTTTTGCATTCGACGAGAG 60.202 52.381 0.00 0.00 0.00 3.20
88 89 1.128692 GGTTTTGCATTCGACGAGAGG 59.871 52.381 0.00 0.00 0.00 3.69
89 90 1.128692 GTTTTGCATTCGACGAGAGGG 59.871 52.381 0.00 0.00 0.00 4.30
90 91 0.391130 TTTGCATTCGACGAGAGGGG 60.391 55.000 0.00 0.00 0.00 4.79
91 92 2.586357 GCATTCGACGAGAGGGGC 60.586 66.667 0.00 0.00 0.00 5.80
92 93 2.278857 CATTCGACGAGAGGGGCG 60.279 66.667 0.00 0.00 0.00 6.13
93 94 3.528370 ATTCGACGAGAGGGGCGG 61.528 66.667 0.00 0.00 0.00 6.13
107 108 3.402233 GCGGCGCGTGCAAATTTT 61.402 55.556 24.18 0.00 45.35 1.82
108 109 2.762616 CGGCGCGTGCAAATTTTC 59.237 55.556 24.18 1.87 45.35 2.29
109 110 2.715849 CGGCGCGTGCAAATTTTCC 61.716 57.895 24.18 1.06 45.35 3.13
110 111 1.372872 GGCGCGTGCAAATTTTCCT 60.373 52.632 24.18 0.00 45.35 3.36
111 112 0.109504 GGCGCGTGCAAATTTTCCTA 60.110 50.000 24.18 0.00 45.35 2.94
112 113 1.259316 GCGCGTGCAAATTTTCCTAG 58.741 50.000 17.66 0.00 42.15 3.02
113 114 1.895051 CGCGTGCAAATTTTCCTAGG 58.105 50.000 0.82 0.82 0.00 3.02
114 115 1.466950 CGCGTGCAAATTTTCCTAGGA 59.533 47.619 7.62 7.62 0.00 2.94
115 116 2.727916 CGCGTGCAAATTTTCCTAGGAC 60.728 50.000 12.22 0.00 0.00 3.85
116 117 2.488153 GCGTGCAAATTTTCCTAGGACT 59.512 45.455 12.22 0.00 0.00 3.85
117 118 3.687698 GCGTGCAAATTTTCCTAGGACTA 59.312 43.478 12.22 2.29 0.00 2.59
118 119 4.155280 GCGTGCAAATTTTCCTAGGACTAA 59.845 41.667 12.22 9.49 0.00 2.24
119 120 5.335348 GCGTGCAAATTTTCCTAGGACTAAA 60.335 40.000 12.22 11.12 0.00 1.85
120 121 6.084277 CGTGCAAATTTTCCTAGGACTAAAC 58.916 40.000 12.22 3.19 0.00 2.01
121 122 6.072673 CGTGCAAATTTTCCTAGGACTAAACT 60.073 38.462 12.22 0.00 0.00 2.66
122 123 7.084486 GTGCAAATTTTCCTAGGACTAAACTG 58.916 38.462 12.22 12.04 0.00 3.16
123 124 6.093404 GCAAATTTTCCTAGGACTAAACTGC 58.907 40.000 12.22 17.21 0.00 4.40
124 125 6.621613 CAAATTTTCCTAGGACTAAACTGCC 58.378 40.000 12.22 0.00 0.00 4.85
125 126 3.994931 TTTCCTAGGACTAAACTGCCC 57.005 47.619 12.22 0.00 0.00 5.36
126 127 1.875488 TCCTAGGACTAAACTGCCCC 58.125 55.000 7.62 0.00 0.00 5.80
127 128 1.365028 TCCTAGGACTAAACTGCCCCT 59.635 52.381 7.62 0.00 0.00 4.79
128 129 2.588720 TCCTAGGACTAAACTGCCCCTA 59.411 50.000 7.62 0.00 0.00 3.53
129 130 3.209152 TCCTAGGACTAAACTGCCCCTAT 59.791 47.826 7.62 0.00 0.00 2.57
130 131 4.421231 TCCTAGGACTAAACTGCCCCTATA 59.579 45.833 7.62 0.00 0.00 1.31
131 132 5.077441 TCCTAGGACTAAACTGCCCCTATAT 59.923 44.000 7.62 0.00 0.00 0.86
132 133 5.785940 CCTAGGACTAAACTGCCCCTATATT 59.214 44.000 1.05 0.00 0.00 1.28
133 134 6.958192 CCTAGGACTAAACTGCCCCTATATTA 59.042 42.308 1.05 0.00 0.00 0.98
134 135 7.456902 CCTAGGACTAAACTGCCCCTATATTAA 59.543 40.741 1.05 0.00 0.00 1.40
135 136 7.701257 AGGACTAAACTGCCCCTATATTAAA 57.299 36.000 0.00 0.00 0.00 1.52
136 137 8.109560 AGGACTAAACTGCCCCTATATTAAAA 57.890 34.615 0.00 0.00 0.00 1.52
137 138 7.997223 AGGACTAAACTGCCCCTATATTAAAAC 59.003 37.037 0.00 0.00 0.00 2.43
138 139 7.041576 GGACTAAACTGCCCCTATATTAAAACG 60.042 40.741 0.00 0.00 0.00 3.60
139 140 5.509716 AAACTGCCCCTATATTAAAACGC 57.490 39.130 0.00 0.00 0.00 4.84
140 141 3.135994 ACTGCCCCTATATTAAAACGCG 58.864 45.455 3.53 3.53 0.00 6.01
141 142 3.135994 CTGCCCCTATATTAAAACGCGT 58.864 45.455 5.58 5.58 0.00 6.01
142 143 3.132925 TGCCCCTATATTAAAACGCGTC 58.867 45.455 14.44 0.00 0.00 5.19
143 144 2.481568 GCCCCTATATTAAAACGCGTCC 59.518 50.000 14.44 0.00 0.00 4.79
144 145 3.069289 CCCCTATATTAAAACGCGTCCC 58.931 50.000 14.44 0.00 0.00 4.46
145 146 3.069289 CCCTATATTAAAACGCGTCCCC 58.931 50.000 14.44 0.00 0.00 4.81
146 147 3.494749 CCCTATATTAAAACGCGTCCCCA 60.495 47.826 14.44 0.00 0.00 4.96
147 148 3.495753 CCTATATTAAAACGCGTCCCCAC 59.504 47.826 14.44 0.00 0.00 4.61
148 149 1.736612 TATTAAAACGCGTCCCCACC 58.263 50.000 14.44 0.00 0.00 4.61
149 150 0.037160 ATTAAAACGCGTCCCCACCT 59.963 50.000 14.44 0.00 0.00 4.00
150 151 0.179023 TTAAAACGCGTCCCCACCTT 60.179 50.000 14.44 0.00 0.00 3.50
151 152 0.885596 TAAAACGCGTCCCCACCTTG 60.886 55.000 14.44 0.00 0.00 3.61
152 153 2.897172 AAAACGCGTCCCCACCTTGT 62.897 55.000 14.44 0.00 0.00 3.16
153 154 3.819877 AACGCGTCCCCACCTTGTC 62.820 63.158 14.44 0.00 0.00 3.18
154 155 4.308458 CGCGTCCCCACCTTGTCA 62.308 66.667 0.00 0.00 0.00 3.58
155 156 2.668550 GCGTCCCCACCTTGTCAC 60.669 66.667 0.00 0.00 0.00 3.67
156 157 2.357034 CGTCCCCACCTTGTCACG 60.357 66.667 0.00 0.00 0.00 4.35
157 158 2.863346 CGTCCCCACCTTGTCACGA 61.863 63.158 0.00 0.00 0.00 4.35
158 159 1.004918 GTCCCCACCTTGTCACGAG 60.005 63.158 0.00 0.00 0.00 4.18
159 160 1.458777 TCCCCACCTTGTCACGAGT 60.459 57.895 0.00 0.00 0.00 4.18
160 161 0.178955 TCCCCACCTTGTCACGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
161 162 0.037605 CCCCACCTTGTCACGAGTAC 60.038 60.000 0.00 0.00 0.00 2.73
162 163 0.037605 CCCACCTTGTCACGAGTACC 60.038 60.000 0.00 0.00 0.00 3.34
163 164 0.388134 CCACCTTGTCACGAGTACCG 60.388 60.000 0.00 2.71 45.44 4.02
164 165 0.388134 CACCTTGTCACGAGTACCGG 60.388 60.000 0.00 0.00 43.93 5.28
165 166 1.445582 CCTTGTCACGAGTACCGGC 60.446 63.158 0.00 0.00 43.93 6.13
166 167 1.445582 CTTGTCACGAGTACCGGCC 60.446 63.158 0.00 0.00 43.93 6.13
167 168 2.830704 CTTGTCACGAGTACCGGCCC 62.831 65.000 0.00 0.00 43.93 5.80
168 169 4.139234 GTCACGAGTACCGGCCCC 62.139 72.222 0.00 0.00 43.93 5.80
169 170 4.682334 TCACGAGTACCGGCCCCA 62.682 66.667 0.00 0.00 43.93 4.96
170 171 4.446413 CACGAGTACCGGCCCCAC 62.446 72.222 0.00 0.00 43.93 4.61
171 172 4.691359 ACGAGTACCGGCCCCACT 62.691 66.667 0.00 0.00 43.93 4.00
172 173 3.834799 CGAGTACCGGCCCCACTC 61.835 72.222 0.00 13.55 36.23 3.51
173 174 3.834799 GAGTACCGGCCCCACTCG 61.835 72.222 0.00 0.00 30.27 4.18
174 175 4.691359 AGTACCGGCCCCACTCGT 62.691 66.667 0.00 0.00 0.00 4.18
175 176 3.698820 GTACCGGCCCCACTCGTT 61.699 66.667 0.00 0.00 0.00 3.85
176 177 2.924101 TACCGGCCCCACTCGTTT 60.924 61.111 0.00 0.00 0.00 3.60
177 178 2.518709 TACCGGCCCCACTCGTTTT 61.519 57.895 0.00 0.00 0.00 2.43
178 179 1.190833 TACCGGCCCCACTCGTTTTA 61.191 55.000 0.00 0.00 0.00 1.52
179 180 1.743995 CCGGCCCCACTCGTTTTAG 60.744 63.158 0.00 0.00 0.00 1.85
180 181 1.004200 CGGCCCCACTCGTTTTAGT 60.004 57.895 0.00 0.00 0.00 2.24
181 182 0.247185 CGGCCCCACTCGTTTTAGTA 59.753 55.000 0.00 0.00 0.00 1.82
182 183 1.730501 GGCCCCACTCGTTTTAGTAC 58.269 55.000 0.00 0.00 0.00 2.73
183 184 1.277273 GGCCCCACTCGTTTTAGTACT 59.723 52.381 0.00 0.00 0.00 2.73
184 185 2.289882 GGCCCCACTCGTTTTAGTACTT 60.290 50.000 0.00 0.00 0.00 2.24
185 186 3.405831 GCCCCACTCGTTTTAGTACTTT 58.594 45.455 0.00 0.00 0.00 2.66
186 187 3.434641 GCCCCACTCGTTTTAGTACTTTC 59.565 47.826 0.00 0.00 0.00 2.62
187 188 3.676646 CCCCACTCGTTTTAGTACTTTCG 59.323 47.826 0.00 1.64 0.00 3.46
188 189 3.122445 CCCACTCGTTTTAGTACTTTCGC 59.878 47.826 0.00 0.00 0.00 4.70
189 190 3.181546 CCACTCGTTTTAGTACTTTCGCG 60.182 47.826 0.00 0.00 0.00 5.87
190 191 3.423206 CACTCGTTTTAGTACTTTCGCGT 59.577 43.478 5.77 0.00 0.00 6.01
191 192 4.612614 CACTCGTTTTAGTACTTTCGCGTA 59.387 41.667 5.77 0.00 0.00 4.42
192 193 4.613031 ACTCGTTTTAGTACTTTCGCGTAC 59.387 41.667 5.77 0.46 39.97 3.67
194 195 5.212194 TCGTTTTAGTACTTTCGCGTACTT 58.788 37.500 11.71 0.00 45.76 2.24
195 196 5.685511 TCGTTTTAGTACTTTCGCGTACTTT 59.314 36.000 11.71 0.00 45.76 2.66
196 197 5.997594 CGTTTTAGTACTTTCGCGTACTTTC 59.002 40.000 11.71 0.00 45.76 2.62
197 198 6.344936 CGTTTTAGTACTTTCGCGTACTTTCA 60.345 38.462 11.71 0.00 45.76 2.69
198 199 7.504818 GTTTTAGTACTTTCGCGTACTTTCAT 58.495 34.615 11.71 0.00 45.76 2.57
199 200 6.859715 TTAGTACTTTCGCGTACTTTCATC 57.140 37.500 11.71 0.00 45.76 2.92
200 201 3.850273 AGTACTTTCGCGTACTTTCATCG 59.150 43.478 5.77 0.00 45.76 3.84
201 202 1.990563 ACTTTCGCGTACTTTCATCGG 59.009 47.619 5.77 0.00 0.00 4.18
202 203 2.256174 CTTTCGCGTACTTTCATCGGA 58.744 47.619 5.77 0.00 0.00 4.55
203 204 1.904144 TTCGCGTACTTTCATCGGAG 58.096 50.000 5.77 0.00 0.00 4.63
204 205 0.806868 TCGCGTACTTTCATCGGAGT 59.193 50.000 5.77 0.00 0.00 3.85
205 206 2.009051 TCGCGTACTTTCATCGGAGTA 58.991 47.619 5.77 0.00 0.00 2.59
206 207 2.107178 CGCGTACTTTCATCGGAGTAC 58.893 52.381 0.00 4.10 42.92 2.73
207 208 2.223203 CGCGTACTTTCATCGGAGTACT 60.223 50.000 0.00 0.00 43.73 2.73
208 209 3.001634 CGCGTACTTTCATCGGAGTACTA 59.998 47.826 0.00 0.00 43.73 1.82
209 210 4.278058 GCGTACTTTCATCGGAGTACTAC 58.722 47.826 0.00 0.00 43.73 2.73
210 211 4.787882 GCGTACTTTCATCGGAGTACTACC 60.788 50.000 0.00 0.45 43.73 3.18
211 212 4.260948 CGTACTTTCATCGGAGTACTACCC 60.261 50.000 0.00 0.00 43.73 3.69
212 213 3.705051 ACTTTCATCGGAGTACTACCCA 58.295 45.455 0.00 0.00 0.00 4.51
213 214 3.700038 ACTTTCATCGGAGTACTACCCAG 59.300 47.826 0.00 0.00 0.00 4.45
214 215 3.377253 TTCATCGGAGTACTACCCAGT 57.623 47.619 0.00 0.00 38.91 4.00
215 216 4.508551 TTCATCGGAGTACTACCCAGTA 57.491 45.455 0.00 0.00 36.14 2.74
227 228 5.990120 ACTACCCAGTACTTCGTATTTGT 57.010 39.130 0.00 0.00 31.45 2.83
228 229 5.958955 ACTACCCAGTACTTCGTATTTGTC 58.041 41.667 0.00 0.00 31.45 3.18
229 230 5.713861 ACTACCCAGTACTTCGTATTTGTCT 59.286 40.000 0.00 0.00 31.45 3.41
230 231 4.817517 ACCCAGTACTTCGTATTTGTCTG 58.182 43.478 0.00 0.00 0.00 3.51
231 232 3.617263 CCCAGTACTTCGTATTTGTCTGC 59.383 47.826 0.00 0.00 0.00 4.26
232 233 3.617263 CCAGTACTTCGTATTTGTCTGCC 59.383 47.826 0.00 0.00 0.00 4.85
233 234 3.303495 CAGTACTTCGTATTTGTCTGCCG 59.697 47.826 0.00 0.00 0.00 5.69
234 235 2.450609 ACTTCGTATTTGTCTGCCGT 57.549 45.000 0.00 0.00 0.00 5.68
235 236 2.762745 ACTTCGTATTTGTCTGCCGTT 58.237 42.857 0.00 0.00 0.00 4.44
236 237 3.916761 ACTTCGTATTTGTCTGCCGTTA 58.083 40.909 0.00 0.00 0.00 3.18
237 238 3.924686 ACTTCGTATTTGTCTGCCGTTAG 59.075 43.478 0.00 0.00 0.00 2.34
238 239 3.853831 TCGTATTTGTCTGCCGTTAGA 57.146 42.857 0.00 0.00 0.00 2.10
239 240 4.380841 TCGTATTTGTCTGCCGTTAGAT 57.619 40.909 0.00 0.00 0.00 1.98
240 241 4.357142 TCGTATTTGTCTGCCGTTAGATC 58.643 43.478 0.00 0.00 0.00 2.75
241 242 3.179795 CGTATTTGTCTGCCGTTAGATCG 59.820 47.826 0.00 0.00 0.00 3.69
242 243 3.520290 ATTTGTCTGCCGTTAGATCGA 57.480 42.857 0.00 0.00 0.00 3.59
243 244 2.273370 TTGTCTGCCGTTAGATCGAC 57.727 50.000 0.00 0.00 0.00 4.20
244 245 1.170442 TGTCTGCCGTTAGATCGACA 58.830 50.000 0.00 0.00 0.00 4.35
245 246 1.749063 TGTCTGCCGTTAGATCGACAT 59.251 47.619 0.00 0.00 0.00 3.06
246 247 2.223502 TGTCTGCCGTTAGATCGACATC 60.224 50.000 0.00 0.00 0.00 3.06
247 248 2.021457 TCTGCCGTTAGATCGACATCA 58.979 47.619 0.00 0.37 0.00 3.07
248 249 2.425668 TCTGCCGTTAGATCGACATCAA 59.574 45.455 0.00 0.00 0.00 2.57
249 250 2.535984 CTGCCGTTAGATCGACATCAAC 59.464 50.000 0.00 0.00 0.00 3.18
250 251 1.517276 GCCGTTAGATCGACATCAACG 59.483 52.381 13.42 13.42 40.02 4.10
251 252 2.793585 GCCGTTAGATCGACATCAACGA 60.794 50.000 19.06 0.00 41.29 3.85
252 253 3.431856 CCGTTAGATCGACATCAACGAA 58.568 45.455 19.06 0.00 41.29 3.85
253 254 3.239941 CCGTTAGATCGACATCAACGAAC 59.760 47.826 19.06 0.00 41.29 3.95
254 255 3.062707 CGTTAGATCGACATCAACGAACG 60.063 47.826 14.62 9.92 41.29 3.95
255 256 1.909376 AGATCGACATCAACGAACGG 58.091 50.000 0.00 0.00 42.80 4.44
256 257 1.201647 AGATCGACATCAACGAACGGT 59.798 47.619 0.00 0.00 42.80 4.83
257 258 1.990563 GATCGACATCAACGAACGGTT 59.009 47.619 0.00 0.00 42.80 4.44
258 259 1.411394 TCGACATCAACGAACGGTTC 58.589 50.000 10.83 10.83 36.49 3.62
259 260 1.001048 TCGACATCAACGAACGGTTCT 60.001 47.619 17.94 3.54 36.49 3.01
260 261 2.226200 TCGACATCAACGAACGGTTCTA 59.774 45.455 17.94 2.54 36.49 2.10
261 262 2.981805 CGACATCAACGAACGGTTCTAA 59.018 45.455 17.94 2.24 36.49 2.10
262 263 3.426191 CGACATCAACGAACGGTTCTAAA 59.574 43.478 17.94 2.56 36.49 1.85
263 264 4.084952 CGACATCAACGAACGGTTCTAAAA 60.085 41.667 17.94 2.89 36.49 1.52
264 265 5.556758 CGACATCAACGAACGGTTCTAAAAA 60.557 40.000 17.94 1.59 36.49 1.94
285 286 6.614694 AAAAACCCAACCACTCTAAAACTT 57.385 33.333 0.00 0.00 0.00 2.66
286 287 5.592104 AAACCCAACCACTCTAAAACTTG 57.408 39.130 0.00 0.00 0.00 3.16
287 288 4.245251 ACCCAACCACTCTAAAACTTGT 57.755 40.909 0.00 0.00 0.00 3.16
288 289 5.376756 ACCCAACCACTCTAAAACTTGTA 57.623 39.130 0.00 0.00 0.00 2.41
410 416 3.806625 ACTGTTTGCACAATTCAGCTT 57.193 38.095 12.69 0.00 30.36 3.74
435 441 6.815641 TCTTTCAGCAGTCAGTCAATAGATTC 59.184 38.462 0.00 0.00 0.00 2.52
469 475 6.286758 TGTCAAATAAAACCATGCATGTTGT 58.713 32.000 24.58 13.80 0.00 3.32
471 477 6.423302 GTCAAATAAAACCATGCATGTTGTCA 59.577 34.615 24.58 7.85 0.00 3.58
537 544 1.429463 GTCACCTGGTTAACAGCGAG 58.571 55.000 8.10 0.00 46.14 5.03
541 548 1.623811 ACCTGGTTAACAGCGAGTCAT 59.376 47.619 8.10 0.00 46.14 3.06
546 553 4.854399 TGGTTAACAGCGAGTCATTTTTG 58.146 39.130 8.10 0.00 0.00 2.44
565 573 8.872845 CATTTTTGGTTGTAGAATAAAGATGGC 58.127 33.333 7.39 0.00 0.00 4.40
662 670 9.098355 TGTCCGATTTATTAAATTGAGAGTGAG 57.902 33.333 15.25 1.01 34.76 3.51
902 922 5.409826 GTCTGATATTTCCAGAATTAGCCGG 59.590 44.000 0.00 0.00 41.72 6.13
1028 1051 5.516996 TGTCGATCATCCGTAAGTGATAAC 58.483 41.667 0.00 0.00 35.33 1.89
1043 1070 5.575019 AGTGATAACGTGTTGTTTGGAAAC 58.425 37.500 0.00 0.00 42.09 2.78
1133 1161 4.657504 AGATATCCAGAATGCACTTCCTCA 59.342 41.667 0.00 0.00 34.11 3.86
1181 1209 6.314400 TCAAAGAACTACATTATGGTTACCGC 59.686 38.462 0.00 0.00 30.96 5.68
1196 1224 4.023021 GGTTACCGCACTAAGGAGATAGAG 60.023 50.000 0.00 0.00 0.00 2.43
1295 1323 8.432805 CCACATTTCCTGACTTACCTTATAGAT 58.567 37.037 0.00 0.00 0.00 1.98
1456 1492 1.854939 TCCATCAGGAAAGGATGCCAT 59.145 47.619 0.00 0.00 42.23 4.40
2107 2178 2.298411 TAACGGGTAGAATTCGGTGC 57.702 50.000 0.00 0.00 0.00 5.01
2122 2193 5.644977 TTCGGTGCTGATATACTCCATAG 57.355 43.478 0.00 0.00 0.00 2.23
2167 3253 7.559335 TTAGGATCAGATTATACATGCTGGT 57.441 36.000 0.00 0.00 0.00 4.00
2184 3270 3.623510 GCTGGTTAACCTGACTATGCTTC 59.376 47.826 29.72 9.32 37.15 3.86
2225 3311 0.610174 TCGGATGCTTCAACTGCTCT 59.390 50.000 1.64 0.00 0.00 4.09
2337 3423 2.885644 GTGCGCCATCGTCGTGAT 60.886 61.111 4.18 0.00 38.01 3.06
2470 3681 1.173913 ACAAATAAGCTTGACGCCCC 58.826 50.000 9.86 0.00 40.39 5.80
2549 3768 4.070716 GGAAGAAGCATGGATGACATAGG 58.929 47.826 0.00 0.00 37.84 2.57
2551 3770 4.620589 AGAAGCATGGATGACATAGGAG 57.379 45.455 0.00 0.00 37.84 3.69
2552 3771 3.327172 AGAAGCATGGATGACATAGGAGG 59.673 47.826 0.00 0.00 37.84 4.30
2553 3772 1.983691 AGCATGGATGACATAGGAGGG 59.016 52.381 0.00 0.00 37.84 4.30
2554 3773 1.980765 GCATGGATGACATAGGAGGGA 59.019 52.381 0.00 0.00 37.84 4.20
2555 3774 2.027377 GCATGGATGACATAGGAGGGAG 60.027 54.545 0.00 0.00 37.84 4.30
2556 3775 3.514539 CATGGATGACATAGGAGGGAGA 58.485 50.000 0.00 0.00 37.84 3.71
2557 3776 2.964209 TGGATGACATAGGAGGGAGAC 58.036 52.381 0.00 0.00 0.00 3.36
2558 3777 2.247372 TGGATGACATAGGAGGGAGACA 59.753 50.000 0.00 0.00 0.00 3.41
2559 3778 2.630580 GGATGACATAGGAGGGAGACAC 59.369 54.545 0.00 0.00 0.00 3.67
2560 3779 2.919772 TGACATAGGAGGGAGACACA 57.080 50.000 0.00 0.00 0.00 3.72
2561 3780 3.184382 TGACATAGGAGGGAGACACAA 57.816 47.619 0.00 0.00 0.00 3.33
2562 3781 3.516586 TGACATAGGAGGGAGACACAAA 58.483 45.455 0.00 0.00 0.00 2.83
2563 3782 4.104086 TGACATAGGAGGGAGACACAAAT 58.896 43.478 0.00 0.00 0.00 2.32
2582 3801 5.908106 CAAATGTCTTTTGCATTTTCTCGG 58.092 37.500 0.00 0.00 42.54 4.63
2584 3803 4.909696 TGTCTTTTGCATTTTCTCGGAA 57.090 36.364 0.00 0.00 0.00 4.30
2585 3804 5.255710 TGTCTTTTGCATTTTCTCGGAAA 57.744 34.783 0.00 0.00 0.00 3.13
2586 3805 5.655488 TGTCTTTTGCATTTTCTCGGAAAA 58.345 33.333 12.24 12.24 32.50 2.29
2618 3938 0.836400 GACAGAGGAGGGGGACACAA 60.836 60.000 0.00 0.00 0.00 3.33
2619 3939 0.401395 ACAGAGGAGGGGGACACAAA 60.401 55.000 0.00 0.00 0.00 2.83
2620 3940 0.995024 CAGAGGAGGGGGACACAAAT 59.005 55.000 0.00 0.00 0.00 2.32
2621 3941 0.995024 AGAGGAGGGGGACACAAATG 59.005 55.000 0.00 0.00 0.00 2.32
2622 3942 0.698818 GAGGAGGGGGACACAAATGT 59.301 55.000 0.00 0.00 43.71 2.71
2638 3958 4.981776 CAAATGTCTTTTGCGTTTTCTCG 58.018 39.130 0.00 0.00 38.42 4.04
2639 3959 4.545823 AATGTCTTTTGCGTTTTCTCGA 57.454 36.364 0.00 0.00 0.00 4.04
2640 3960 3.585748 TGTCTTTTGCGTTTTCTCGAG 57.414 42.857 5.93 5.93 0.00 4.04
2641 3961 3.191669 TGTCTTTTGCGTTTTCTCGAGA 58.808 40.909 12.08 12.08 0.00 4.04
2642 3962 3.245284 TGTCTTTTGCGTTTTCTCGAGAG 59.755 43.478 15.94 5.09 0.00 3.20
2643 3963 3.489785 GTCTTTTGCGTTTTCTCGAGAGA 59.510 43.478 15.94 8.62 39.12 3.10
2644 3964 4.025979 GTCTTTTGCGTTTTCTCGAGAGAA 60.026 41.667 15.94 14.90 44.94 2.87
2666 3986 2.256117 AAAAACCGACCAGACAGAGG 57.744 50.000 0.00 0.00 0.00 3.69
2667 3987 1.420430 AAAACCGACCAGACAGAGGA 58.580 50.000 0.00 0.00 0.00 3.71
2668 3988 0.969894 AAACCGACCAGACAGAGGAG 59.030 55.000 0.00 0.00 0.00 3.69
2669 3989 0.900647 AACCGACCAGACAGAGGAGG 60.901 60.000 0.00 0.00 35.01 4.30
2670 3990 2.055042 CCGACCAGACAGAGGAGGG 61.055 68.421 0.00 0.00 0.00 4.30
2671 3991 2.055042 CGACCAGACAGAGGAGGGG 61.055 68.421 0.00 0.00 0.00 4.79
2672 3992 1.687493 GACCAGACAGAGGAGGGGG 60.687 68.421 0.00 0.00 0.00 5.40
2673 3993 2.169590 GACCAGACAGAGGAGGGGGA 62.170 65.000 0.00 0.00 0.00 4.81
2674 3994 1.687493 CCAGACAGAGGAGGGGGAC 60.687 68.421 0.00 0.00 0.00 4.46
2675 3995 1.390125 CAGACAGAGGAGGGGGACT 59.610 63.158 0.00 0.00 0.00 3.85
2683 4003 2.592512 AGAGGAGGGGGACTAATCTCAA 59.407 50.000 0.00 0.00 0.00 3.02
2718 4038 4.645136 TGTAGTCGTATCTGGCTGAGATTT 59.355 41.667 0.00 0.00 41.94 2.17
2719 4039 4.744795 AGTCGTATCTGGCTGAGATTTT 57.255 40.909 0.00 0.00 41.94 1.82
2726 4046 6.652481 CGTATCTGGCTGAGATTTTATTGGAT 59.348 38.462 0.00 0.00 41.94 3.41
2727 4047 7.173907 CGTATCTGGCTGAGATTTTATTGGATT 59.826 37.037 0.00 0.00 41.94 3.01
2785 4106 5.144159 TCCTCTCCATAGGACTATGTTGT 57.856 43.478 15.89 0.00 40.86 3.32
2805 4126 5.242069 TGTCGTGAACAAACATCAAACAT 57.758 34.783 0.00 0.00 34.03 2.71
2807 4128 5.034152 GTCGTGAACAAACATCAAACATGT 58.966 37.500 0.00 0.00 0.00 3.21
2838 4159 2.291089 TGCCTGATGATCAACACCATGT 60.291 45.455 0.00 0.00 0.00 3.21
2865 4186 1.153289 CTTGATGCCACTCCGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
2913 4234 6.426937 CGAGAAATAATTATTCCCATCACCGT 59.573 38.462 11.08 0.00 0.00 4.83
2945 4266 2.448153 TTCACCGACGACGAAGACCG 62.448 60.000 9.28 0.00 42.66 4.79
2956 4277 0.514255 CGAAGACCGTACGAGACACA 59.486 55.000 18.76 0.00 0.00 3.72
2960 4281 0.179230 GACCGTACGAGACACAGACG 60.179 60.000 18.76 0.00 0.00 4.18
2964 4285 1.676635 TACGAGACACAGACGGGGG 60.677 63.158 0.00 0.00 0.00 5.40
2967 4288 3.591254 GAGACACAGACGGGGGCAC 62.591 68.421 0.00 0.00 0.00 5.01
2973 4294 4.371417 AGACGGGGGCACGACCTA 62.371 66.667 7.82 0.00 39.10 3.08
3062 4383 1.679944 CCTCAATGGGATGCAAGTCGT 60.680 52.381 0.00 0.00 0.00 4.34
3079 4400 1.532078 GTCTCCCGATCCCCTCTCC 60.532 68.421 0.00 0.00 0.00 3.71
3121 4443 5.856455 GGAAATGGTGTCAACTCGTTATTTG 59.144 40.000 0.00 0.00 0.00 2.32
3126 4448 6.717413 TGGTGTCAACTCGTTATTTGTTTAC 58.283 36.000 0.00 0.00 0.00 2.01
3430 5239 9.546428 AAAATGAAGTAAAAGGAAACCATGAAG 57.454 29.630 0.00 0.00 0.00 3.02
3470 5279 3.731547 TGGGCTGGTCCAGAGATG 58.268 61.111 23.77 0.00 36.21 2.90
3471 5280 1.080907 TGGGCTGGTCCAGAGATGA 59.919 57.895 23.77 0.00 36.21 2.92
3472 5281 0.326904 TGGGCTGGTCCAGAGATGAT 60.327 55.000 23.77 0.00 36.21 2.45
3473 5282 0.396060 GGGCTGGTCCAGAGATGATC 59.604 60.000 23.77 2.39 36.21 2.92
3474 5283 1.126488 GGCTGGTCCAGAGATGATCA 58.874 55.000 23.77 0.00 32.44 2.92
3475 5284 1.070445 GGCTGGTCCAGAGATGATCAG 59.930 57.143 23.77 0.00 42.63 2.90
3476 5285 2.529780 CTGGTCCAGAGATGATCAGC 57.470 55.000 14.26 1.78 34.45 4.26
3477 5286 2.040939 CTGGTCCAGAGATGATCAGCT 58.959 52.381 14.53 14.53 34.45 4.24
3478 5287 2.036217 CTGGTCCAGAGATGATCAGCTC 59.964 54.545 29.36 29.36 43.71 4.09
3479 5288 2.037901 GGTCCAGAGATGATCAGCTCA 58.962 52.381 35.31 17.70 45.64 4.26
3480 5289 2.036217 GGTCCAGAGATGATCAGCTCAG 59.964 54.545 35.31 28.96 45.64 3.35
3481 5290 1.687660 TCCAGAGATGATCAGCTCAGC 59.312 52.381 35.31 15.61 45.64 4.26
3482 5291 1.270412 CCAGAGATGATCAGCTCAGCC 60.270 57.143 35.31 15.27 45.64 4.85
3483 5292 1.050204 AGAGATGATCAGCTCAGCCC 58.950 55.000 35.31 14.92 45.64 5.19
3484 5293 0.757512 GAGATGATCAGCTCAGCCCA 59.242 55.000 31.00 0.00 41.33 5.36
3485 5294 0.469070 AGATGATCAGCTCAGCCCAC 59.531 55.000 7.89 0.00 41.33 4.61
3486 5295 0.879400 GATGATCAGCTCAGCCCACG 60.879 60.000 3.07 0.00 37.28 4.94
3487 5296 2.894387 GATCAGCTCAGCCCACGC 60.894 66.667 0.00 0.00 0.00 5.34
3488 5297 3.670637 GATCAGCTCAGCCCACGCA 62.671 63.158 0.00 0.00 37.52 5.24
3489 5298 3.677284 ATCAGCTCAGCCCACGCAG 62.677 63.158 0.00 0.00 37.52 5.18
3504 5313 4.452733 CAGCCTCCCCGACGAACC 62.453 72.222 0.00 0.00 0.00 3.62
3505 5314 4.698625 AGCCTCCCCGACGAACCT 62.699 66.667 0.00 0.00 0.00 3.50
3506 5315 4.452733 GCCTCCCCGACGAACCTG 62.453 72.222 0.00 0.00 0.00 4.00
3507 5316 3.771160 CCTCCCCGACGAACCTGG 61.771 72.222 0.00 0.00 0.00 4.45
3508 5317 3.771160 CTCCCCGACGAACCTGGG 61.771 72.222 0.00 0.00 42.92 4.45
3509 5318 4.626402 TCCCCGACGAACCTGGGT 62.626 66.667 0.00 0.00 41.63 4.51
3510 5319 4.078516 CCCCGACGAACCTGGGTC 62.079 72.222 0.28 0.28 41.63 4.46
3515 5324 3.637297 GACGAACCTGGGTCGTATC 57.363 57.895 36.95 23.09 40.37 2.24
3516 5325 0.101939 GACGAACCTGGGTCGTATCC 59.898 60.000 36.95 22.37 40.37 2.59
3517 5326 0.324091 ACGAACCTGGGTCGTATCCT 60.324 55.000 36.22 13.34 38.39 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.726351 CGCCCTCTCCTCCAAGTCC 61.726 68.421 0.00 0.00 0.00 3.85
2 3 2.726351 CCGCCCTCTCCTCCAAGTC 61.726 68.421 0.00 0.00 0.00 3.01
3 4 2.685380 CCGCCCTCTCCTCCAAGT 60.685 66.667 0.00 0.00 0.00 3.16
4 5 2.364317 TCCGCCCTCTCCTCCAAG 60.364 66.667 0.00 0.00 0.00 3.61
5 6 2.243774 ATCTCCGCCCTCTCCTCCAA 62.244 60.000 0.00 0.00 0.00 3.53
6 7 2.705487 ATCTCCGCCCTCTCCTCCA 61.705 63.158 0.00 0.00 0.00 3.86
7 8 2.200092 ATCTCCGCCCTCTCCTCC 59.800 66.667 0.00 0.00 0.00 4.30
8 9 2.206536 CCATCTCCGCCCTCTCCTC 61.207 68.421 0.00 0.00 0.00 3.71
9 10 2.123077 CCATCTCCGCCCTCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
10 11 3.934962 GCCATCTCCGCCCTCTCC 61.935 72.222 0.00 0.00 0.00 3.71
11 12 3.934962 GGCCATCTCCGCCCTCTC 61.935 72.222 0.00 0.00 40.78 3.20
19 20 1.006805 CTCATCGACGGCCATCTCC 60.007 63.158 2.24 0.00 0.00 3.71
20 21 0.952280 TACTCATCGACGGCCATCTC 59.048 55.000 2.24 0.00 0.00 2.75
21 22 1.399714 TTACTCATCGACGGCCATCT 58.600 50.000 2.24 0.00 0.00 2.90
22 23 2.440539 ATTACTCATCGACGGCCATC 57.559 50.000 2.24 0.00 0.00 3.51
23 24 2.158957 ACAATTACTCATCGACGGCCAT 60.159 45.455 2.24 0.00 0.00 4.40
24 25 1.206132 ACAATTACTCATCGACGGCCA 59.794 47.619 2.24 0.00 0.00 5.36
25 26 1.593006 CACAATTACTCATCGACGGCC 59.407 52.381 0.00 0.00 0.00 6.13
26 27 1.593006 CCACAATTACTCATCGACGGC 59.407 52.381 0.00 0.00 0.00 5.68
27 28 3.159353 TCCACAATTACTCATCGACGG 57.841 47.619 0.00 0.00 0.00 4.79
28 29 3.551890 CCTTCCACAATTACTCATCGACG 59.448 47.826 0.00 0.00 0.00 5.12
29 30 4.330074 CACCTTCCACAATTACTCATCGAC 59.670 45.833 0.00 0.00 0.00 4.20
30 31 4.020573 ACACCTTCCACAATTACTCATCGA 60.021 41.667 0.00 0.00 0.00 3.59
31 32 4.253685 ACACCTTCCACAATTACTCATCG 58.746 43.478 0.00 0.00 0.00 3.84
32 33 5.294552 GCTACACCTTCCACAATTACTCATC 59.705 44.000 0.00 0.00 0.00 2.92
33 34 5.186198 GCTACACCTTCCACAATTACTCAT 58.814 41.667 0.00 0.00 0.00 2.90
34 35 4.041075 TGCTACACCTTCCACAATTACTCA 59.959 41.667 0.00 0.00 0.00 3.41
35 36 4.392138 GTGCTACACCTTCCACAATTACTC 59.608 45.833 0.00 0.00 0.00 2.59
36 37 4.324267 GTGCTACACCTTCCACAATTACT 58.676 43.478 0.00 0.00 0.00 2.24
37 38 4.680171 GTGCTACACCTTCCACAATTAC 57.320 45.455 0.00 0.00 0.00 1.89
50 51 3.508840 GCCGCCATGGTGCTACAC 61.509 66.667 20.39 2.49 41.21 2.90
57 58 3.679738 CAAAACCGCCGCCATGGT 61.680 61.111 14.67 0.00 41.21 3.55
59 60 3.646023 ATGCAAAACCGCCGCCATG 62.646 57.895 0.00 0.00 0.00 3.66
60 61 2.834034 GAATGCAAAACCGCCGCCAT 62.834 55.000 0.00 0.00 0.00 4.40
61 62 3.565910 GAATGCAAAACCGCCGCCA 62.566 57.895 0.00 0.00 0.00 5.69
62 63 2.809174 GAATGCAAAACCGCCGCC 60.809 61.111 0.00 0.00 0.00 6.13
63 64 3.171911 CGAATGCAAAACCGCCGC 61.172 61.111 0.00 0.00 0.00 6.53
64 65 1.795962 GTCGAATGCAAAACCGCCG 60.796 57.895 0.00 0.00 0.00 6.46
65 66 1.795962 CGTCGAATGCAAAACCGCC 60.796 57.895 0.00 0.00 0.00 6.13
66 67 0.789383 CTCGTCGAATGCAAAACCGC 60.789 55.000 0.00 0.00 0.00 5.68
67 68 0.787787 TCTCGTCGAATGCAAAACCG 59.212 50.000 0.00 0.00 0.00 4.44
68 69 1.128692 CCTCTCGTCGAATGCAAAACC 59.871 52.381 0.00 0.00 0.00 3.27
69 70 1.128692 CCCTCTCGTCGAATGCAAAAC 59.871 52.381 0.00 0.00 0.00 2.43
70 71 1.438651 CCCTCTCGTCGAATGCAAAA 58.561 50.000 0.00 0.00 0.00 2.44
71 72 0.391130 CCCCTCTCGTCGAATGCAAA 60.391 55.000 0.00 0.00 0.00 3.68
72 73 1.218047 CCCCTCTCGTCGAATGCAA 59.782 57.895 0.00 0.00 0.00 4.08
73 74 2.892640 CCCCTCTCGTCGAATGCA 59.107 61.111 0.00 0.00 0.00 3.96
74 75 2.586357 GCCCCTCTCGTCGAATGC 60.586 66.667 0.00 0.00 0.00 3.56
75 76 2.278857 CGCCCCTCTCGTCGAATG 60.279 66.667 0.00 0.00 0.00 2.67
76 77 3.528370 CCGCCCCTCTCGTCGAAT 61.528 66.667 0.00 0.00 0.00 3.34
90 91 3.333898 GAAAATTTGCACGCGCCGC 62.334 57.895 5.73 10.65 37.32 6.53
91 92 2.715849 GGAAAATTTGCACGCGCCG 61.716 57.895 5.73 0.00 37.32 6.46
92 93 0.109504 TAGGAAAATTTGCACGCGCC 60.110 50.000 5.73 0.00 37.32 6.53
93 94 1.259316 CTAGGAAAATTTGCACGCGC 58.741 50.000 5.73 0.00 39.24 6.86
94 95 1.466950 TCCTAGGAAAATTTGCACGCG 59.533 47.619 9.71 3.53 0.00 6.01
95 96 2.488153 AGTCCTAGGAAAATTTGCACGC 59.512 45.455 14.65 0.00 0.00 5.34
96 97 5.873179 TTAGTCCTAGGAAAATTTGCACG 57.127 39.130 14.65 0.00 0.00 5.34
97 98 7.084486 CAGTTTAGTCCTAGGAAAATTTGCAC 58.916 38.462 14.65 6.00 0.00 4.57
98 99 6.294508 GCAGTTTAGTCCTAGGAAAATTTGCA 60.295 38.462 25.23 7.46 0.00 4.08
99 100 6.093404 GCAGTTTAGTCCTAGGAAAATTTGC 58.907 40.000 14.65 18.89 0.00 3.68
100 101 6.350194 GGGCAGTTTAGTCCTAGGAAAATTTG 60.350 42.308 14.65 14.01 0.00 2.32
101 102 5.715279 GGGCAGTTTAGTCCTAGGAAAATTT 59.285 40.000 14.65 1.97 0.00 1.82
102 103 5.262009 GGGCAGTTTAGTCCTAGGAAAATT 58.738 41.667 14.65 5.58 0.00 1.82
103 104 4.325109 GGGGCAGTTTAGTCCTAGGAAAAT 60.325 45.833 14.65 5.30 32.56 1.82
104 105 3.009805 GGGGCAGTTTAGTCCTAGGAAAA 59.990 47.826 14.65 8.88 32.56 2.29
105 106 2.574824 GGGGCAGTTTAGTCCTAGGAAA 59.425 50.000 14.65 1.76 32.56 3.13
106 107 2.193993 GGGGCAGTTTAGTCCTAGGAA 58.806 52.381 14.65 0.00 32.56 3.36
107 108 1.365028 AGGGGCAGTTTAGTCCTAGGA 59.635 52.381 7.62 7.62 32.56 2.94
108 109 1.880941 AGGGGCAGTTTAGTCCTAGG 58.119 55.000 0.82 0.82 32.56 3.02
109 110 6.936968 AATATAGGGGCAGTTTAGTCCTAG 57.063 41.667 0.00 0.00 34.10 3.02
110 111 8.802057 TTTAATATAGGGGCAGTTTAGTCCTA 57.198 34.615 0.00 0.00 34.96 2.94
111 112 7.701257 TTTAATATAGGGGCAGTTTAGTCCT 57.299 36.000 0.00 0.00 32.56 3.85
112 113 7.041576 CGTTTTAATATAGGGGCAGTTTAGTCC 60.042 40.741 0.00 0.00 0.00 3.85
113 114 7.519488 GCGTTTTAATATAGGGGCAGTTTAGTC 60.519 40.741 0.00 0.00 0.00 2.59
114 115 6.261603 GCGTTTTAATATAGGGGCAGTTTAGT 59.738 38.462 0.00 0.00 0.00 2.24
115 116 6.565247 CGCGTTTTAATATAGGGGCAGTTTAG 60.565 42.308 0.00 0.00 0.00 1.85
116 117 5.236911 CGCGTTTTAATATAGGGGCAGTTTA 59.763 40.000 0.00 0.00 0.00 2.01
117 118 4.035909 CGCGTTTTAATATAGGGGCAGTTT 59.964 41.667 0.00 0.00 0.00 2.66
118 119 3.562557 CGCGTTTTAATATAGGGGCAGTT 59.437 43.478 0.00 0.00 0.00 3.16
119 120 3.135994 CGCGTTTTAATATAGGGGCAGT 58.864 45.455 0.00 0.00 0.00 4.40
120 121 3.135994 ACGCGTTTTAATATAGGGGCAG 58.864 45.455 5.58 0.00 0.00 4.85
121 122 3.132925 GACGCGTTTTAATATAGGGGCA 58.867 45.455 15.53 0.00 0.00 5.36
122 123 2.481568 GGACGCGTTTTAATATAGGGGC 59.518 50.000 15.53 0.00 0.00 5.80
123 124 3.069289 GGGACGCGTTTTAATATAGGGG 58.931 50.000 15.53 0.00 0.00 4.79
124 125 3.069289 GGGGACGCGTTTTAATATAGGG 58.931 50.000 15.53 0.00 0.00 3.53
125 126 3.495753 GTGGGGACGCGTTTTAATATAGG 59.504 47.826 15.53 0.00 0.00 2.57
126 127 3.495753 GGTGGGGACGCGTTTTAATATAG 59.504 47.826 15.53 0.00 43.50 1.31
127 128 3.134442 AGGTGGGGACGCGTTTTAATATA 59.866 43.478 15.53 0.00 43.50 0.86
128 129 2.092807 AGGTGGGGACGCGTTTTAATAT 60.093 45.455 15.53 0.00 43.50 1.28
129 130 1.278699 AGGTGGGGACGCGTTTTAATA 59.721 47.619 15.53 0.00 43.50 0.98
130 131 0.037160 AGGTGGGGACGCGTTTTAAT 59.963 50.000 15.53 0.00 43.50 1.40
131 132 0.179023 AAGGTGGGGACGCGTTTTAA 60.179 50.000 15.53 0.00 45.82 1.52
132 133 0.885596 CAAGGTGGGGACGCGTTTTA 60.886 55.000 15.53 0.00 45.82 1.52
133 134 2.190841 CAAGGTGGGGACGCGTTTT 61.191 57.895 15.53 0.00 45.82 2.43
134 135 2.593436 CAAGGTGGGGACGCGTTT 60.593 61.111 15.53 0.00 45.82 3.60
136 137 4.309950 GACAAGGTGGGGACGCGT 62.310 66.667 13.85 13.85 43.50 6.01
137 138 4.308458 TGACAAGGTGGGGACGCG 62.308 66.667 3.53 3.53 43.50 6.01
138 139 2.668550 GTGACAAGGTGGGGACGC 60.669 66.667 0.00 0.00 41.20 5.19
139 140 2.357034 CGTGACAAGGTGGGGACG 60.357 66.667 0.00 0.00 0.00 4.79
140 141 1.004918 CTCGTGACAAGGTGGGGAC 60.005 63.158 0.00 0.00 0.00 4.46
141 142 0.178955 TACTCGTGACAAGGTGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
142 143 0.037605 GTACTCGTGACAAGGTGGGG 60.038 60.000 0.00 0.00 0.00 4.96
143 144 0.037605 GGTACTCGTGACAAGGTGGG 60.038 60.000 0.00 0.00 0.00 4.61
144 145 0.388134 CGGTACTCGTGACAAGGTGG 60.388 60.000 0.00 0.00 0.00 4.61
145 146 0.388134 CCGGTACTCGTGACAAGGTG 60.388 60.000 0.00 0.00 37.11 4.00
146 147 1.962144 CCGGTACTCGTGACAAGGT 59.038 57.895 0.00 0.00 37.11 3.50
147 148 1.445582 GCCGGTACTCGTGACAAGG 60.446 63.158 1.90 0.00 37.11 3.61
148 149 1.445582 GGCCGGTACTCGTGACAAG 60.446 63.158 1.90 0.00 37.11 3.16
149 150 2.652530 GGCCGGTACTCGTGACAA 59.347 61.111 1.90 0.00 37.11 3.18
150 151 3.376078 GGGCCGGTACTCGTGACA 61.376 66.667 1.90 0.00 37.11 3.58
151 152 4.139234 GGGGCCGGTACTCGTGAC 62.139 72.222 1.90 0.00 37.11 3.67
152 153 4.682334 TGGGGCCGGTACTCGTGA 62.682 66.667 1.90 0.00 37.11 4.35
153 154 4.446413 GTGGGGCCGGTACTCGTG 62.446 72.222 1.90 0.00 37.11 4.35
154 155 4.691359 AGTGGGGCCGGTACTCGT 62.691 66.667 1.90 0.00 37.11 4.18
155 156 3.834799 GAGTGGGGCCGGTACTCG 61.835 72.222 15.38 0.00 32.48 4.18
156 157 3.834799 CGAGTGGGGCCGGTACTC 61.835 72.222 18.69 18.69 37.93 2.59
157 158 4.691359 ACGAGTGGGGCCGGTACT 62.691 66.667 1.90 6.45 0.00 2.73
158 159 2.736579 AAAACGAGTGGGGCCGGTAC 62.737 60.000 1.90 0.00 0.00 3.34
159 160 1.190833 TAAAACGAGTGGGGCCGGTA 61.191 55.000 1.90 0.00 0.00 4.02
160 161 2.459202 CTAAAACGAGTGGGGCCGGT 62.459 60.000 1.90 0.00 0.00 5.28
161 162 1.743995 CTAAAACGAGTGGGGCCGG 60.744 63.158 0.00 0.00 0.00 6.13
162 163 0.247185 TACTAAAACGAGTGGGGCCG 59.753 55.000 0.00 0.00 0.00 6.13
163 164 1.277273 AGTACTAAAACGAGTGGGGCC 59.723 52.381 0.00 0.00 0.00 5.80
164 165 2.756840 AGTACTAAAACGAGTGGGGC 57.243 50.000 0.00 0.00 0.00 5.80
165 166 3.676646 CGAAAGTACTAAAACGAGTGGGG 59.323 47.826 0.00 0.00 0.00 4.96
166 167 3.122445 GCGAAAGTACTAAAACGAGTGGG 59.878 47.826 0.00 0.00 0.00 4.61
167 168 3.181546 CGCGAAAGTACTAAAACGAGTGG 60.182 47.826 0.00 0.00 0.00 4.00
168 169 3.423206 ACGCGAAAGTACTAAAACGAGTG 59.577 43.478 15.93 5.48 33.43 3.51
169 170 3.632189 ACGCGAAAGTACTAAAACGAGT 58.368 40.909 15.93 12.42 0.00 4.18
170 171 5.093751 GTACGCGAAAGTACTAAAACGAG 57.906 43.478 15.93 11.93 42.58 4.18
179 180 3.001365 CCGATGAAAGTACGCGAAAGTAC 60.001 47.826 15.93 4.51 45.31 2.73
180 181 3.119884 TCCGATGAAAGTACGCGAAAGTA 60.120 43.478 15.93 0.00 0.00 2.24
181 182 1.990563 CCGATGAAAGTACGCGAAAGT 59.009 47.619 15.93 0.00 0.00 2.66
182 183 2.256174 TCCGATGAAAGTACGCGAAAG 58.744 47.619 15.93 0.00 0.00 2.62
183 184 2.256174 CTCCGATGAAAGTACGCGAAA 58.744 47.619 15.93 0.00 0.00 3.46
184 185 1.200716 ACTCCGATGAAAGTACGCGAA 59.799 47.619 15.93 0.00 0.00 4.70
185 186 0.806868 ACTCCGATGAAAGTACGCGA 59.193 50.000 15.93 0.00 0.00 5.87
186 187 2.107178 GTACTCCGATGAAAGTACGCG 58.893 52.381 3.53 3.53 38.72 6.01
189 190 4.641989 TGGGTAGTACTCCGATGAAAGTAC 59.358 45.833 0.00 4.85 45.30 2.73
190 191 4.858850 TGGGTAGTACTCCGATGAAAGTA 58.141 43.478 0.00 0.00 0.00 2.24
191 192 3.700038 CTGGGTAGTACTCCGATGAAAGT 59.300 47.826 0.00 0.00 0.00 2.66
192 193 3.700038 ACTGGGTAGTACTCCGATGAAAG 59.300 47.826 0.00 0.00 34.74 2.62
193 194 3.705051 ACTGGGTAGTACTCCGATGAAA 58.295 45.455 0.00 0.00 34.74 2.69
194 195 3.377253 ACTGGGTAGTACTCCGATGAA 57.623 47.619 0.00 0.00 34.74 2.57
216 217 4.171005 TCTAACGGCAGACAAATACGAAG 58.829 43.478 0.00 0.00 0.00 3.79
217 218 4.177165 TCTAACGGCAGACAAATACGAA 57.823 40.909 0.00 0.00 0.00 3.85
218 219 3.853831 TCTAACGGCAGACAAATACGA 57.146 42.857 0.00 0.00 0.00 3.43
219 220 3.179795 CGATCTAACGGCAGACAAATACG 59.820 47.826 0.00 0.00 0.00 3.06
220 221 4.206609 GTCGATCTAACGGCAGACAAATAC 59.793 45.833 0.00 0.00 37.83 1.89
221 222 4.142337 TGTCGATCTAACGGCAGACAAATA 60.142 41.667 0.00 0.00 42.82 1.40
222 223 3.187700 GTCGATCTAACGGCAGACAAAT 58.812 45.455 0.00 0.00 37.83 2.32
223 224 2.029739 TGTCGATCTAACGGCAGACAAA 60.030 45.455 0.00 0.00 42.82 2.83
224 225 1.542472 TGTCGATCTAACGGCAGACAA 59.458 47.619 0.00 0.00 42.82 3.18
225 226 1.170442 TGTCGATCTAACGGCAGACA 58.830 50.000 0.00 0.00 42.82 3.41
230 231 1.517276 CGTTGATGTCGATCTAACGGC 59.483 52.381 14.97 0.00 38.30 5.68
231 232 3.060978 TCGTTGATGTCGATCTAACGG 57.939 47.619 19.50 7.98 40.13 4.44
232 233 3.062707 CGTTCGTTGATGTCGATCTAACG 60.063 47.826 16.02 16.02 40.55 3.18
233 234 3.239941 CCGTTCGTTGATGTCGATCTAAC 59.760 47.826 0.00 0.00 37.18 2.34
234 235 3.119743 ACCGTTCGTTGATGTCGATCTAA 60.120 43.478 0.00 0.00 37.18 2.10
235 236 2.421073 ACCGTTCGTTGATGTCGATCTA 59.579 45.455 0.00 0.00 37.18 1.98
236 237 1.201647 ACCGTTCGTTGATGTCGATCT 59.798 47.619 0.00 0.00 37.18 2.75
237 238 1.625616 ACCGTTCGTTGATGTCGATC 58.374 50.000 0.00 0.00 37.18 3.69
238 239 1.990563 GAACCGTTCGTTGATGTCGAT 59.009 47.619 0.00 0.00 37.18 3.59
239 240 1.001048 AGAACCGTTCGTTGATGTCGA 60.001 47.619 5.62 0.00 33.74 4.20
240 241 1.415374 AGAACCGTTCGTTGATGTCG 58.585 50.000 5.62 0.00 33.74 4.35
241 242 4.977741 TTTAGAACCGTTCGTTGATGTC 57.022 40.909 5.62 0.00 33.74 3.06
242 243 5.738118 TTTTTAGAACCGTTCGTTGATGT 57.262 34.783 5.62 0.00 33.74 3.06
262 263 6.014070 ACAAGTTTTAGAGTGGTTGGGTTTTT 60.014 34.615 0.00 0.00 0.00 1.94
263 264 5.482526 ACAAGTTTTAGAGTGGTTGGGTTTT 59.517 36.000 0.00 0.00 0.00 2.43
264 265 5.020795 ACAAGTTTTAGAGTGGTTGGGTTT 58.979 37.500 0.00 0.00 0.00 3.27
265 266 4.606210 ACAAGTTTTAGAGTGGTTGGGTT 58.394 39.130 0.00 0.00 0.00 4.11
266 267 4.245251 ACAAGTTTTAGAGTGGTTGGGT 57.755 40.909 0.00 0.00 0.00 4.51
267 268 6.715264 AGAATACAAGTTTTAGAGTGGTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
268 269 7.745620 AGAATACAAGTTTTAGAGTGGTTGG 57.254 36.000 0.00 0.00 0.00 3.77
410 416 5.728637 TCTATTGACTGACTGCTGAAAGA 57.271 39.130 0.00 0.00 34.07 2.52
541 548 7.870445 GTGCCATCTTTATTCTACAACCAAAAA 59.130 33.333 0.00 0.00 0.00 1.94
546 553 5.193679 AGGTGCCATCTTTATTCTACAACC 58.806 41.667 0.00 0.00 0.00 3.77
565 573 9.357652 CTTTTACATTCATATGTGGAAAAGGTG 57.642 33.333 23.78 9.69 44.56 4.00
662 670 7.364522 TCGAGCACTCATAAATATTAATGGC 57.635 36.000 0.00 0.00 0.00 4.40
946 967 5.833131 TCTGGATTACCAAAAGCAGAAAACT 59.167 36.000 0.00 0.00 46.32 2.66
1028 1051 2.817538 AGACGTTTCCAAACAACACG 57.182 45.000 3.21 0.00 38.81 4.49
1043 1070 3.793797 AAAAGGGGTTTTGACAAGACG 57.206 42.857 3.04 0.00 0.00 4.18
1133 1161 3.008330 CAGCATAAGAGCTTGAAGCACT 58.992 45.455 20.45 15.85 45.56 4.40
1181 1209 8.684386 TGATACACTTCTCTATCTCCTTAGTG 57.316 38.462 0.00 0.00 37.95 2.74
1196 1224 3.790091 TGCTGCATCTCTGATACACTTC 58.210 45.455 0.00 0.00 0.00 3.01
1456 1492 7.870509 ACTGAGCTGCTTTGATAATATGAAA 57.129 32.000 2.53 0.00 0.00 2.69
1596 1662 5.361571 AGCAGATTTTCACCATATTGCATCA 59.638 36.000 0.00 0.00 33.00 3.07
1933 2000 6.485830 TCCATCTGGTATTCAGTAAGGAAG 57.514 41.667 0.00 0.00 43.76 3.46
2092 2163 2.622064 ATCAGCACCGAATTCTACCC 57.378 50.000 3.52 0.00 0.00 3.69
2167 3253 4.546829 AACGGAAGCATAGTCAGGTTAA 57.453 40.909 0.00 0.00 0.00 2.01
2184 3270 2.534349 CGTGTTCCTATCATCGAAACGG 59.466 50.000 0.00 0.00 0.00 4.44
2225 3311 6.717997 GGTAGTTGGGGTAATTGAAGAAAAGA 59.282 38.462 0.00 0.00 0.00 2.52
2337 3423 0.249280 ACATGTCAGACGCGTGTTCA 60.249 50.000 20.70 15.13 32.75 3.18
2491 3709 0.749091 TCTGCAATGCATCCGAAGGG 60.749 55.000 8.91 0.00 40.98 3.95
2560 3779 5.841810 TCCGAGAAAATGCAAAAGACATTT 58.158 33.333 0.00 0.00 46.85 2.32
2561 3780 5.452078 TCCGAGAAAATGCAAAAGACATT 57.548 34.783 0.00 0.00 39.38 2.71
2562 3781 5.452078 TTCCGAGAAAATGCAAAAGACAT 57.548 34.783 0.00 0.00 0.00 3.06
2563 3782 4.909696 TTCCGAGAAAATGCAAAAGACA 57.090 36.364 0.00 0.00 0.00 3.41
2586 3805 0.537371 CTCTGTCTGGCCGGGTTTTT 60.537 55.000 12.87 0.00 0.00 1.94
2590 3910 4.316823 TCCTCTGTCTGGCCGGGT 62.317 66.667 12.87 0.00 0.00 5.28
2594 3914 3.086600 CCCCTCCTCTGTCTGGCC 61.087 72.222 0.00 0.00 0.00 5.36
2602 3922 0.995024 CATTTGTGTCCCCCTCCTCT 59.005 55.000 0.00 0.00 0.00 3.69
2618 3938 4.272504 TCTCGAGAAAACGCAAAAGACATT 59.727 37.500 14.01 0.00 0.00 2.71
2619 3939 3.807622 TCTCGAGAAAACGCAAAAGACAT 59.192 39.130 14.01 0.00 0.00 3.06
2620 3940 3.191669 TCTCGAGAAAACGCAAAAGACA 58.808 40.909 14.01 0.00 0.00 3.41
2621 3941 3.489785 TCTCTCGAGAAAACGCAAAAGAC 59.510 43.478 17.36 0.00 33.91 3.01
2622 3942 3.713288 TCTCTCGAGAAAACGCAAAAGA 58.287 40.909 17.36 3.08 33.91 2.52
2623 3943 4.452890 TTCTCTCGAGAAAACGCAAAAG 57.547 40.909 17.36 0.47 43.79 2.27
2647 3967 1.766496 TCCTCTGTCTGGTCGGTTTTT 59.234 47.619 0.00 0.00 0.00 1.94
2648 3968 1.344763 CTCCTCTGTCTGGTCGGTTTT 59.655 52.381 0.00 0.00 0.00 2.43
2649 3969 0.969894 CTCCTCTGTCTGGTCGGTTT 59.030 55.000 0.00 0.00 0.00 3.27
2650 3970 0.900647 CCTCCTCTGTCTGGTCGGTT 60.901 60.000 0.00 0.00 0.00 4.44
2651 3971 1.304547 CCTCCTCTGTCTGGTCGGT 60.305 63.158 0.00 0.00 0.00 4.69
2652 3972 2.055042 CCCTCCTCTGTCTGGTCGG 61.055 68.421 0.00 0.00 0.00 4.79
2653 3973 2.055042 CCCCTCCTCTGTCTGGTCG 61.055 68.421 0.00 0.00 0.00 4.79
2654 3974 1.687493 CCCCCTCCTCTGTCTGGTC 60.687 68.421 0.00 0.00 0.00 4.02
2655 3975 2.177518 TCCCCCTCCTCTGTCTGGT 61.178 63.158 0.00 0.00 0.00 4.00
2656 3976 1.687493 GTCCCCCTCCTCTGTCTGG 60.687 68.421 0.00 0.00 0.00 3.86
2657 3977 0.631753 TAGTCCCCCTCCTCTGTCTG 59.368 60.000 0.00 0.00 0.00 3.51
2658 3978 1.394532 TTAGTCCCCCTCCTCTGTCT 58.605 55.000 0.00 0.00 0.00 3.41
2659 3979 2.090999 AGATTAGTCCCCCTCCTCTGTC 60.091 54.545 0.00 0.00 0.00 3.51
2660 3980 1.940957 AGATTAGTCCCCCTCCTCTGT 59.059 52.381 0.00 0.00 0.00 3.41
2661 3981 2.091055 TGAGATTAGTCCCCCTCCTCTG 60.091 54.545 0.00 0.00 0.00 3.35
2662 3982 2.227703 TGAGATTAGTCCCCCTCCTCT 58.772 52.381 0.00 0.00 0.00 3.69
2663 3983 2.777459 TGAGATTAGTCCCCCTCCTC 57.223 55.000 0.00 0.00 0.00 3.71
2664 3984 3.508952 TTTGAGATTAGTCCCCCTCCT 57.491 47.619 0.00 0.00 0.00 3.69
2665 3985 3.523972 ACTTTTGAGATTAGTCCCCCTCC 59.476 47.826 0.00 0.00 0.00 4.30
2666 3986 4.846168 ACTTTTGAGATTAGTCCCCCTC 57.154 45.455 0.00 0.00 0.00 4.30
2667 3987 4.852697 AGAACTTTTGAGATTAGTCCCCCT 59.147 41.667 0.00 0.00 0.00 4.79
2668 3988 5.180810 AGAACTTTTGAGATTAGTCCCCC 57.819 43.478 0.00 0.00 0.00 5.40
2669 3989 7.526142 AAAAGAACTTTTGAGATTAGTCCCC 57.474 36.000 11.04 0.00 40.84 4.81
2683 4003 9.367444 CCAGATACGACTACATAAAAGAACTTT 57.633 33.333 0.00 0.00 0.00 2.66
2718 4038 7.585440 TCTCCATTTCCATCTCAATCCAATAA 58.415 34.615 0.00 0.00 0.00 1.40
2719 4039 7.152942 TCTCCATTTCCATCTCAATCCAATA 57.847 36.000 0.00 0.00 0.00 1.90
2726 4046 6.514870 CGTGTTTTTCTCCATTTCCATCTCAA 60.515 38.462 0.00 0.00 0.00 3.02
2727 4047 5.048782 CGTGTTTTTCTCCATTTCCATCTCA 60.049 40.000 0.00 0.00 0.00 3.27
2785 4106 5.163713 TGACATGTTTGATGTTTGTTCACGA 60.164 36.000 0.00 0.00 31.52 4.35
2798 4119 2.618241 GCAGTTGGTCTGACATGTTTGA 59.382 45.455 10.38 0.00 46.27 2.69
2838 4159 4.319133 GGCATCAAGGAGCCGAAA 57.681 55.556 0.00 0.00 41.70 3.46
2865 4186 3.866449 GCTTTCCCCATGTCGATATCCTC 60.866 52.174 0.00 0.00 0.00 3.71
2870 4191 0.105964 CGGCTTTCCCCATGTCGATA 59.894 55.000 0.00 0.00 29.15 2.92
2913 4234 2.281484 GTGAAGTTGGGGCAGCGA 60.281 61.111 0.00 0.00 0.00 4.93
2945 4266 1.505353 CCCCGTCTGTGTCTCGTAC 59.495 63.158 0.00 0.00 0.00 3.67
2956 4277 3.892104 TTAGGTCGTGCCCCCGTCT 62.892 63.158 0.00 0.00 38.26 4.18
2960 4281 2.532465 GAACCTTAGGTCGTGCCCCC 62.532 65.000 3.62 0.00 33.12 5.40
2964 4285 0.606604 TGAGGAACCTTAGGTCGTGC 59.393 55.000 3.62 0.00 33.12 5.34
3032 4353 2.360350 CATTGAGGCACCGGCACT 60.360 61.111 0.00 0.00 43.71 4.40
3042 4363 1.019673 CGACTTGCATCCCATTGAGG 58.980 55.000 0.00 0.00 37.03 3.86
3062 4383 2.780185 GGGAGAGGGGATCGGGAGA 61.780 68.421 0.00 0.00 46.90 3.71
3072 4393 1.242444 TAGGGTTCCTAGGGAGAGGG 58.758 60.000 9.46 0.00 37.20 4.30
3106 4428 7.632721 TCCTTGTAAACAAATAACGAGTTGAC 58.367 34.615 0.00 0.00 34.26 3.18
3437 5246 0.386113 CCCAGTTAGAGGTAGCTCGC 59.614 60.000 15.91 10.46 0.00 5.03
3466 5275 0.469070 GTGGGCTGAGCTGATCATCT 59.531 55.000 3.72 0.00 37.28 2.90
3467 5276 0.879400 CGTGGGCTGAGCTGATCATC 60.879 60.000 3.72 0.00 37.28 2.92
3468 5277 1.145598 CGTGGGCTGAGCTGATCAT 59.854 57.895 3.72 0.00 37.28 2.45
3469 5278 2.580815 CGTGGGCTGAGCTGATCA 59.419 61.111 3.72 0.00 36.21 2.92
3470 5279 2.894387 GCGTGGGCTGAGCTGATC 60.894 66.667 3.72 0.00 35.83 2.92
3471 5280 3.677284 CTGCGTGGGCTGAGCTGAT 62.677 63.158 3.72 0.00 40.22 2.90
3472 5281 4.383861 CTGCGTGGGCTGAGCTGA 62.384 66.667 3.72 0.00 40.22 4.26
3487 5296 4.452733 GGTTCGTCGGGGAGGCTG 62.453 72.222 0.00 0.00 0.00 4.85
3488 5297 4.698625 AGGTTCGTCGGGGAGGCT 62.699 66.667 0.00 0.00 0.00 4.58
3489 5298 4.452733 CAGGTTCGTCGGGGAGGC 62.453 72.222 0.00 0.00 0.00 4.70
3490 5299 3.771160 CCAGGTTCGTCGGGGAGG 61.771 72.222 0.00 0.00 0.00 4.30
3491 5300 3.771160 CCCAGGTTCGTCGGGGAG 61.771 72.222 0.00 0.00 43.57 4.30
3492 5301 4.626402 ACCCAGGTTCGTCGGGGA 62.626 66.667 10.13 0.00 44.96 4.81
3493 5302 4.078516 GACCCAGGTTCGTCGGGG 62.079 72.222 2.30 2.30 44.96 5.73
3494 5303 4.430765 CGACCCAGGTTCGTCGGG 62.431 72.222 8.47 0.00 46.21 5.14
3497 5306 0.101939 GGATACGACCCAGGTTCGTC 59.898 60.000 16.40 2.31 40.70 4.20
3498 5307 0.324091 AGGATACGACCCAGGTTCGT 60.324 55.000 17.11 17.11 46.39 3.85
3499 5308 2.501492 AGGATACGACCCAGGTTCG 58.499 57.895 4.55 4.55 46.39 3.95



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.