Multiple sequence alignment - TraesCS6D01G099900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G099900
chr6D
100.000
3518
0
0
1
3518
62899536
62896019
0.000000e+00
6497.0
1
TraesCS6D01G099900
chr6D
84.624
1821
186
40
288
2060
63123321
63121547
0.000000e+00
1725.0
2
TraesCS6D01G099900
chr6D
99.654
289
1
0
1
289
91173434
91173722
2.400000e-146
529.0
3
TraesCS6D01G099900
chr6D
98.621
290
4
0
1
290
19663069
19663358
6.730000e-142
514.0
4
TraesCS6D01G099900
chr6D
83.210
405
42
9
2169
2547
63121472
63121068
7.230000e-92
348.0
5
TraesCS6D01G099900
chr6A
94.384
2279
104
12
290
2549
80699608
80697335
0.000000e+00
3478.0
6
TraesCS6D01G099900
chr6A
85.232
711
73
16
2657
3340
80697200
80696495
0.000000e+00
702.0
7
TraesCS6D01G099900
chr6A
87.640
89
10
1
3379
3466
80696315
80696227
6.210000e-18
102.0
8
TraesCS6D01G099900
chr6B
91.108
2283
145
30
290
2547
136514737
136512488
0.000000e+00
3038.0
9
TraesCS6D01G099900
chr6B
94.737
1843
80
7
290
2125
136524669
136522837
0.000000e+00
2850.0
10
TraesCS6D01G099900
chr6B
86.322
658
66
15
2664
3304
136512329
136511679
0.000000e+00
695.0
11
TraesCS6D01G099900
chr6B
83.982
668
78
18
2657
3304
136521151
136520493
6.450000e-172
614.0
12
TraesCS6D01G099900
chr6B
95.753
259
10
1
2143
2400
136521804
136521546
1.950000e-112
416.0
13
TraesCS6D01G099900
chr6B
92.063
63
3
2
3405
3466
136511147
136511086
1.740000e-13
87.9
14
TraesCS6D01G099900
chr7D
99.656
291
1
0
1
291
52449825
52450115
1.860000e-147
532.0
15
TraesCS6D01G099900
chr7D
98.671
301
3
1
1
301
616575893
616575594
1.860000e-147
532.0
16
TraesCS6D01G099900
chr7D
98.020
303
4
2
1
303
95070187
95070487
3.110000e-145
525.0
17
TraesCS6D01G099900
chr3D
99.313
291
2
0
1
291
546384111
546384401
8.650000e-146
527.0
18
TraesCS6D01G099900
chr3D
98.980
294
2
1
1
293
54676916
54677209
3.110000e-145
525.0
19
TraesCS6D01G099900
chr3D
98.339
301
2
3
1
299
613845539
613845240
3.110000e-145
525.0
20
TraesCS6D01G099900
chr5D
98.020
303
5
1
1
303
48501088
48501389
3.110000e-145
525.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G099900
chr6D
62896019
62899536
3517
True
6497.000000
6497
100.000000
1
3518
1
chr6D.!!$R1
3517
1
TraesCS6D01G099900
chr6D
63121068
63123321
2253
True
1036.500000
1725
83.917000
288
2547
2
chr6D.!!$R2
2259
2
TraesCS6D01G099900
chr6A
80696227
80699608
3381
True
1427.333333
3478
89.085333
290
3466
3
chr6A.!!$R1
3176
3
TraesCS6D01G099900
chr6B
136520493
136524669
4176
True
1293.333333
2850
91.490667
290
3304
3
chr6B.!!$R2
3014
4
TraesCS6D01G099900
chr6B
136511086
136514737
3651
True
1273.633333
3038
89.831000
290
3466
3
chr6B.!!$R1
3176
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
149
150
0.037160
ATTAAAACGCGTCCCCACCT
59.963
50.000
14.44
0.00
0.00
4.00
F
161
162
0.037605
CCCCACCTTGTCACGAGTAC
60.038
60.000
0.00
0.00
0.00
2.73
F
181
182
0.247185
CGGCCCCACTCGTTTTAGTA
59.753
55.000
0.00
0.00
0.00
1.82
F
204
205
0.806868
TCGCGTACTTTCATCGGAGT
59.193
50.000
5.77
0.00
0.00
3.85
F
259
260
1.001048
TCGACATCAACGAACGGTTCT
60.001
47.619
17.94
3.54
36.49
3.01
F
2225
3311
0.610174
TCGGATGCTTCAACTGCTCT
59.390
50.000
1.64
0.00
0.00
4.09
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2092
2163
2.622064
ATCAGCACCGAATTCTACCC
57.378
50.000
3.52
0.00
0.00
3.69
R
2167
3253
4.546829
AACGGAAGCATAGTCAGGTTAA
57.453
40.909
0.00
0.00
0.00
2.01
R
2184
3270
2.534349
CGTGTTCCTATCATCGAAACGG
59.466
50.000
0.00
0.00
0.00
4.44
R
2225
3311
6.717997
GGTAGTTGGGGTAATTGAAGAAAAGA
59.282
38.462
0.00
0.00
0.00
2.52
R
2337
3423
0.249280
ACATGTCAGACGCGTGTTCA
60.249
50.000
20.70
15.13
32.75
3.18
R
3497
5306
0.101939
GGATACGACCCAGGTTCGTC
59.898
60.000
16.40
2.31
40.70
4.20
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
4.896979
TGGACTTGGAGGAGAGGG
57.103
61.111
0.00
0.00
0.00
4.30
18
19
1.613630
TGGACTTGGAGGAGAGGGC
60.614
63.158
0.00
0.00
0.00
5.19
19
20
2.726351
GGACTTGGAGGAGAGGGCG
61.726
68.421
0.00
0.00
0.00
6.13
20
21
2.685380
ACTTGGAGGAGAGGGCGG
60.685
66.667
0.00
0.00
0.00
6.13
21
22
2.364317
CTTGGAGGAGAGGGCGGA
60.364
66.667
0.00
0.00
0.00
5.54
22
23
2.364317
TTGGAGGAGAGGGCGGAG
60.364
66.667
0.00
0.00
0.00
4.63
23
24
2.863019
CTTGGAGGAGAGGGCGGAGA
62.863
65.000
0.00
0.00
0.00
3.71
24
25
2.200092
GGAGGAGAGGGCGGAGAT
59.800
66.667
0.00
0.00
0.00
2.75
25
26
2.206536
GGAGGAGAGGGCGGAGATG
61.207
68.421
0.00
0.00
0.00
2.90
26
27
2.123077
AGGAGAGGGCGGAGATGG
60.123
66.667
0.00
0.00
0.00
3.51
27
28
3.934962
GGAGAGGGCGGAGATGGC
61.935
72.222
0.00
0.00
0.00
4.40
35
36
2.355126
CGGAGATGGCCGTCGATG
60.355
66.667
19.32
8.96
46.07
3.84
36
37
2.845550
CGGAGATGGCCGTCGATGA
61.846
63.158
19.32
0.00
46.07
2.92
37
38
1.006805
GGAGATGGCCGTCGATGAG
60.007
63.158
19.32
0.00
0.00
2.90
38
39
1.736586
GAGATGGCCGTCGATGAGT
59.263
57.895
19.32
0.00
0.00
3.41
39
40
0.952280
GAGATGGCCGTCGATGAGTA
59.048
55.000
19.32
0.00
0.00
2.59
40
41
1.337071
GAGATGGCCGTCGATGAGTAA
59.663
52.381
19.32
0.00
0.00
2.24
41
42
1.964223
AGATGGCCGTCGATGAGTAAT
59.036
47.619
19.32
0.00
0.00
1.89
42
43
2.365617
AGATGGCCGTCGATGAGTAATT
59.634
45.455
19.32
0.00
0.00
1.40
43
44
1.934589
TGGCCGTCGATGAGTAATTG
58.065
50.000
6.11
0.00
0.00
2.32
44
45
1.206132
TGGCCGTCGATGAGTAATTGT
59.794
47.619
6.11
0.00
0.00
2.71
45
46
1.593006
GGCCGTCGATGAGTAATTGTG
59.407
52.381
6.11
0.00
0.00
3.33
46
47
1.593006
GCCGTCGATGAGTAATTGTGG
59.407
52.381
6.11
0.00
0.00
4.17
47
48
2.737359
GCCGTCGATGAGTAATTGTGGA
60.737
50.000
6.11
0.00
0.00
4.02
48
49
3.517602
CCGTCGATGAGTAATTGTGGAA
58.482
45.455
6.11
0.00
0.00
3.53
49
50
3.551890
CCGTCGATGAGTAATTGTGGAAG
59.448
47.826
6.11
0.00
0.00
3.46
50
51
3.551890
CGTCGATGAGTAATTGTGGAAGG
59.448
47.826
0.00
0.00
0.00
3.46
51
52
4.504858
GTCGATGAGTAATTGTGGAAGGT
58.495
43.478
0.00
0.00
0.00
3.50
52
53
4.330074
GTCGATGAGTAATTGTGGAAGGTG
59.670
45.833
0.00
0.00
0.00
4.00
53
54
4.020573
TCGATGAGTAATTGTGGAAGGTGT
60.021
41.667
0.00
0.00
0.00
4.16
54
55
5.186215
TCGATGAGTAATTGTGGAAGGTGTA
59.814
40.000
0.00
0.00
0.00
2.90
55
56
5.520288
CGATGAGTAATTGTGGAAGGTGTAG
59.480
44.000
0.00
0.00
0.00
2.74
56
57
4.575885
TGAGTAATTGTGGAAGGTGTAGC
58.424
43.478
0.00
0.00
0.00
3.58
57
58
4.041075
TGAGTAATTGTGGAAGGTGTAGCA
59.959
41.667
0.00
0.00
0.00
3.49
58
59
4.324267
AGTAATTGTGGAAGGTGTAGCAC
58.676
43.478
0.00
0.00
0.00
4.40
67
68
3.508840
GTGTAGCACCATGGCGGC
61.509
66.667
18.72
18.72
39.03
6.53
73
74
3.679738
CACCATGGCGGCGGTTTT
61.680
61.111
13.04
0.00
39.03
2.43
74
75
3.679738
ACCATGGCGGCGGTTTTG
61.680
61.111
13.04
0.00
39.03
2.44
76
77
4.354939
CATGGCGGCGGTTTTGCA
62.355
61.111
9.78
0.00
36.28
4.08
77
78
3.381136
ATGGCGGCGGTTTTGCAT
61.381
55.556
9.78
0.00
36.28
3.96
78
79
2.941616
ATGGCGGCGGTTTTGCATT
61.942
52.632
9.78
0.00
36.28
3.56
79
80
2.809174
GGCGGCGGTTTTGCATTC
60.809
61.111
9.78
0.00
36.28
2.67
80
81
3.171911
GCGGCGGTTTTGCATTCG
61.172
61.111
9.78
0.00
36.28
3.34
81
82
2.558821
CGGCGGTTTTGCATTCGA
59.441
55.556
0.00
0.00
36.28
3.71
82
83
1.795962
CGGCGGTTTTGCATTCGAC
60.796
57.895
0.00
0.00
36.28
4.20
83
84
1.795962
GGCGGTTTTGCATTCGACG
60.796
57.895
0.00
0.00
36.28
5.12
84
85
1.205568
GCGGTTTTGCATTCGACGA
59.794
52.632
0.00
0.00
34.15
4.20
85
86
0.789383
GCGGTTTTGCATTCGACGAG
60.789
55.000
0.00
0.00
34.15
4.18
86
87
0.787787
CGGTTTTGCATTCGACGAGA
59.212
50.000
0.00
0.00
0.00
4.04
87
88
1.201812
CGGTTTTGCATTCGACGAGAG
60.202
52.381
0.00
0.00
0.00
3.20
88
89
1.128692
GGTTTTGCATTCGACGAGAGG
59.871
52.381
0.00
0.00
0.00
3.69
89
90
1.128692
GTTTTGCATTCGACGAGAGGG
59.871
52.381
0.00
0.00
0.00
4.30
90
91
0.391130
TTTGCATTCGACGAGAGGGG
60.391
55.000
0.00
0.00
0.00
4.79
91
92
2.586357
GCATTCGACGAGAGGGGC
60.586
66.667
0.00
0.00
0.00
5.80
92
93
2.278857
CATTCGACGAGAGGGGCG
60.279
66.667
0.00
0.00
0.00
6.13
93
94
3.528370
ATTCGACGAGAGGGGCGG
61.528
66.667
0.00
0.00
0.00
6.13
107
108
3.402233
GCGGCGCGTGCAAATTTT
61.402
55.556
24.18
0.00
45.35
1.82
108
109
2.762616
CGGCGCGTGCAAATTTTC
59.237
55.556
24.18
1.87
45.35
2.29
109
110
2.715849
CGGCGCGTGCAAATTTTCC
61.716
57.895
24.18
1.06
45.35
3.13
110
111
1.372872
GGCGCGTGCAAATTTTCCT
60.373
52.632
24.18
0.00
45.35
3.36
111
112
0.109504
GGCGCGTGCAAATTTTCCTA
60.110
50.000
24.18
0.00
45.35
2.94
112
113
1.259316
GCGCGTGCAAATTTTCCTAG
58.741
50.000
17.66
0.00
42.15
3.02
113
114
1.895051
CGCGTGCAAATTTTCCTAGG
58.105
50.000
0.82
0.82
0.00
3.02
114
115
1.466950
CGCGTGCAAATTTTCCTAGGA
59.533
47.619
7.62
7.62
0.00
2.94
115
116
2.727916
CGCGTGCAAATTTTCCTAGGAC
60.728
50.000
12.22
0.00
0.00
3.85
116
117
2.488153
GCGTGCAAATTTTCCTAGGACT
59.512
45.455
12.22
0.00
0.00
3.85
117
118
3.687698
GCGTGCAAATTTTCCTAGGACTA
59.312
43.478
12.22
2.29
0.00
2.59
118
119
4.155280
GCGTGCAAATTTTCCTAGGACTAA
59.845
41.667
12.22
9.49
0.00
2.24
119
120
5.335348
GCGTGCAAATTTTCCTAGGACTAAA
60.335
40.000
12.22
11.12
0.00
1.85
120
121
6.084277
CGTGCAAATTTTCCTAGGACTAAAC
58.916
40.000
12.22
3.19
0.00
2.01
121
122
6.072673
CGTGCAAATTTTCCTAGGACTAAACT
60.073
38.462
12.22
0.00
0.00
2.66
122
123
7.084486
GTGCAAATTTTCCTAGGACTAAACTG
58.916
38.462
12.22
12.04
0.00
3.16
123
124
6.093404
GCAAATTTTCCTAGGACTAAACTGC
58.907
40.000
12.22
17.21
0.00
4.40
124
125
6.621613
CAAATTTTCCTAGGACTAAACTGCC
58.378
40.000
12.22
0.00
0.00
4.85
125
126
3.994931
TTTCCTAGGACTAAACTGCCC
57.005
47.619
12.22
0.00
0.00
5.36
126
127
1.875488
TCCTAGGACTAAACTGCCCC
58.125
55.000
7.62
0.00
0.00
5.80
127
128
1.365028
TCCTAGGACTAAACTGCCCCT
59.635
52.381
7.62
0.00
0.00
4.79
128
129
2.588720
TCCTAGGACTAAACTGCCCCTA
59.411
50.000
7.62
0.00
0.00
3.53
129
130
3.209152
TCCTAGGACTAAACTGCCCCTAT
59.791
47.826
7.62
0.00
0.00
2.57
130
131
4.421231
TCCTAGGACTAAACTGCCCCTATA
59.579
45.833
7.62
0.00
0.00
1.31
131
132
5.077441
TCCTAGGACTAAACTGCCCCTATAT
59.923
44.000
7.62
0.00
0.00
0.86
132
133
5.785940
CCTAGGACTAAACTGCCCCTATATT
59.214
44.000
1.05
0.00
0.00
1.28
133
134
6.958192
CCTAGGACTAAACTGCCCCTATATTA
59.042
42.308
1.05
0.00
0.00
0.98
134
135
7.456902
CCTAGGACTAAACTGCCCCTATATTAA
59.543
40.741
1.05
0.00
0.00
1.40
135
136
7.701257
AGGACTAAACTGCCCCTATATTAAA
57.299
36.000
0.00
0.00
0.00
1.52
136
137
8.109560
AGGACTAAACTGCCCCTATATTAAAA
57.890
34.615
0.00
0.00
0.00
1.52
137
138
7.997223
AGGACTAAACTGCCCCTATATTAAAAC
59.003
37.037
0.00
0.00
0.00
2.43
138
139
7.041576
GGACTAAACTGCCCCTATATTAAAACG
60.042
40.741
0.00
0.00
0.00
3.60
139
140
5.509716
AAACTGCCCCTATATTAAAACGC
57.490
39.130
0.00
0.00
0.00
4.84
140
141
3.135994
ACTGCCCCTATATTAAAACGCG
58.864
45.455
3.53
3.53
0.00
6.01
141
142
3.135994
CTGCCCCTATATTAAAACGCGT
58.864
45.455
5.58
5.58
0.00
6.01
142
143
3.132925
TGCCCCTATATTAAAACGCGTC
58.867
45.455
14.44
0.00
0.00
5.19
143
144
2.481568
GCCCCTATATTAAAACGCGTCC
59.518
50.000
14.44
0.00
0.00
4.79
144
145
3.069289
CCCCTATATTAAAACGCGTCCC
58.931
50.000
14.44
0.00
0.00
4.46
145
146
3.069289
CCCTATATTAAAACGCGTCCCC
58.931
50.000
14.44
0.00
0.00
4.81
146
147
3.494749
CCCTATATTAAAACGCGTCCCCA
60.495
47.826
14.44
0.00
0.00
4.96
147
148
3.495753
CCTATATTAAAACGCGTCCCCAC
59.504
47.826
14.44
0.00
0.00
4.61
148
149
1.736612
TATTAAAACGCGTCCCCACC
58.263
50.000
14.44
0.00
0.00
4.61
149
150
0.037160
ATTAAAACGCGTCCCCACCT
59.963
50.000
14.44
0.00
0.00
4.00
150
151
0.179023
TTAAAACGCGTCCCCACCTT
60.179
50.000
14.44
0.00
0.00
3.50
151
152
0.885596
TAAAACGCGTCCCCACCTTG
60.886
55.000
14.44
0.00
0.00
3.61
152
153
2.897172
AAAACGCGTCCCCACCTTGT
62.897
55.000
14.44
0.00
0.00
3.16
153
154
3.819877
AACGCGTCCCCACCTTGTC
62.820
63.158
14.44
0.00
0.00
3.18
154
155
4.308458
CGCGTCCCCACCTTGTCA
62.308
66.667
0.00
0.00
0.00
3.58
155
156
2.668550
GCGTCCCCACCTTGTCAC
60.669
66.667
0.00
0.00
0.00
3.67
156
157
2.357034
CGTCCCCACCTTGTCACG
60.357
66.667
0.00
0.00
0.00
4.35
157
158
2.863346
CGTCCCCACCTTGTCACGA
61.863
63.158
0.00
0.00
0.00
4.35
158
159
1.004918
GTCCCCACCTTGTCACGAG
60.005
63.158
0.00
0.00
0.00
4.18
159
160
1.458777
TCCCCACCTTGTCACGAGT
60.459
57.895
0.00
0.00
0.00
4.18
160
161
0.178955
TCCCCACCTTGTCACGAGTA
60.179
55.000
0.00
0.00
0.00
2.59
161
162
0.037605
CCCCACCTTGTCACGAGTAC
60.038
60.000
0.00
0.00
0.00
2.73
162
163
0.037605
CCCACCTTGTCACGAGTACC
60.038
60.000
0.00
0.00
0.00
3.34
163
164
0.388134
CCACCTTGTCACGAGTACCG
60.388
60.000
0.00
2.71
45.44
4.02
164
165
0.388134
CACCTTGTCACGAGTACCGG
60.388
60.000
0.00
0.00
43.93
5.28
165
166
1.445582
CCTTGTCACGAGTACCGGC
60.446
63.158
0.00
0.00
43.93
6.13
166
167
1.445582
CTTGTCACGAGTACCGGCC
60.446
63.158
0.00
0.00
43.93
6.13
167
168
2.830704
CTTGTCACGAGTACCGGCCC
62.831
65.000
0.00
0.00
43.93
5.80
168
169
4.139234
GTCACGAGTACCGGCCCC
62.139
72.222
0.00
0.00
43.93
5.80
169
170
4.682334
TCACGAGTACCGGCCCCA
62.682
66.667
0.00
0.00
43.93
4.96
170
171
4.446413
CACGAGTACCGGCCCCAC
62.446
72.222
0.00
0.00
43.93
4.61
171
172
4.691359
ACGAGTACCGGCCCCACT
62.691
66.667
0.00
0.00
43.93
4.00
172
173
3.834799
CGAGTACCGGCCCCACTC
61.835
72.222
0.00
13.55
36.23
3.51
173
174
3.834799
GAGTACCGGCCCCACTCG
61.835
72.222
0.00
0.00
30.27
4.18
174
175
4.691359
AGTACCGGCCCCACTCGT
62.691
66.667
0.00
0.00
0.00
4.18
175
176
3.698820
GTACCGGCCCCACTCGTT
61.699
66.667
0.00
0.00
0.00
3.85
176
177
2.924101
TACCGGCCCCACTCGTTT
60.924
61.111
0.00
0.00
0.00
3.60
177
178
2.518709
TACCGGCCCCACTCGTTTT
61.519
57.895
0.00
0.00
0.00
2.43
178
179
1.190833
TACCGGCCCCACTCGTTTTA
61.191
55.000
0.00
0.00
0.00
1.52
179
180
1.743995
CCGGCCCCACTCGTTTTAG
60.744
63.158
0.00
0.00
0.00
1.85
180
181
1.004200
CGGCCCCACTCGTTTTAGT
60.004
57.895
0.00
0.00
0.00
2.24
181
182
0.247185
CGGCCCCACTCGTTTTAGTA
59.753
55.000
0.00
0.00
0.00
1.82
182
183
1.730501
GGCCCCACTCGTTTTAGTAC
58.269
55.000
0.00
0.00
0.00
2.73
183
184
1.277273
GGCCCCACTCGTTTTAGTACT
59.723
52.381
0.00
0.00
0.00
2.73
184
185
2.289882
GGCCCCACTCGTTTTAGTACTT
60.290
50.000
0.00
0.00
0.00
2.24
185
186
3.405831
GCCCCACTCGTTTTAGTACTTT
58.594
45.455
0.00
0.00
0.00
2.66
186
187
3.434641
GCCCCACTCGTTTTAGTACTTTC
59.565
47.826
0.00
0.00
0.00
2.62
187
188
3.676646
CCCCACTCGTTTTAGTACTTTCG
59.323
47.826
0.00
1.64
0.00
3.46
188
189
3.122445
CCCACTCGTTTTAGTACTTTCGC
59.878
47.826
0.00
0.00
0.00
4.70
189
190
3.181546
CCACTCGTTTTAGTACTTTCGCG
60.182
47.826
0.00
0.00
0.00
5.87
190
191
3.423206
CACTCGTTTTAGTACTTTCGCGT
59.577
43.478
5.77
0.00
0.00
6.01
191
192
4.612614
CACTCGTTTTAGTACTTTCGCGTA
59.387
41.667
5.77
0.00
0.00
4.42
192
193
4.613031
ACTCGTTTTAGTACTTTCGCGTAC
59.387
41.667
5.77
0.46
39.97
3.67
194
195
5.212194
TCGTTTTAGTACTTTCGCGTACTT
58.788
37.500
11.71
0.00
45.76
2.24
195
196
5.685511
TCGTTTTAGTACTTTCGCGTACTTT
59.314
36.000
11.71
0.00
45.76
2.66
196
197
5.997594
CGTTTTAGTACTTTCGCGTACTTTC
59.002
40.000
11.71
0.00
45.76
2.62
197
198
6.344936
CGTTTTAGTACTTTCGCGTACTTTCA
60.345
38.462
11.71
0.00
45.76
2.69
198
199
7.504818
GTTTTAGTACTTTCGCGTACTTTCAT
58.495
34.615
11.71
0.00
45.76
2.57
199
200
6.859715
TTAGTACTTTCGCGTACTTTCATC
57.140
37.500
11.71
0.00
45.76
2.92
200
201
3.850273
AGTACTTTCGCGTACTTTCATCG
59.150
43.478
5.77
0.00
45.76
3.84
201
202
1.990563
ACTTTCGCGTACTTTCATCGG
59.009
47.619
5.77
0.00
0.00
4.18
202
203
2.256174
CTTTCGCGTACTTTCATCGGA
58.744
47.619
5.77
0.00
0.00
4.55
203
204
1.904144
TTCGCGTACTTTCATCGGAG
58.096
50.000
5.77
0.00
0.00
4.63
204
205
0.806868
TCGCGTACTTTCATCGGAGT
59.193
50.000
5.77
0.00
0.00
3.85
205
206
2.009051
TCGCGTACTTTCATCGGAGTA
58.991
47.619
5.77
0.00
0.00
2.59
206
207
2.107178
CGCGTACTTTCATCGGAGTAC
58.893
52.381
0.00
4.10
42.92
2.73
207
208
2.223203
CGCGTACTTTCATCGGAGTACT
60.223
50.000
0.00
0.00
43.73
2.73
208
209
3.001634
CGCGTACTTTCATCGGAGTACTA
59.998
47.826
0.00
0.00
43.73
1.82
209
210
4.278058
GCGTACTTTCATCGGAGTACTAC
58.722
47.826
0.00
0.00
43.73
2.73
210
211
4.787882
GCGTACTTTCATCGGAGTACTACC
60.788
50.000
0.00
0.45
43.73
3.18
211
212
4.260948
CGTACTTTCATCGGAGTACTACCC
60.261
50.000
0.00
0.00
43.73
3.69
212
213
3.705051
ACTTTCATCGGAGTACTACCCA
58.295
45.455
0.00
0.00
0.00
4.51
213
214
3.700038
ACTTTCATCGGAGTACTACCCAG
59.300
47.826
0.00
0.00
0.00
4.45
214
215
3.377253
TTCATCGGAGTACTACCCAGT
57.623
47.619
0.00
0.00
38.91
4.00
215
216
4.508551
TTCATCGGAGTACTACCCAGTA
57.491
45.455
0.00
0.00
36.14
2.74
227
228
5.990120
ACTACCCAGTACTTCGTATTTGT
57.010
39.130
0.00
0.00
31.45
2.83
228
229
5.958955
ACTACCCAGTACTTCGTATTTGTC
58.041
41.667
0.00
0.00
31.45
3.18
229
230
5.713861
ACTACCCAGTACTTCGTATTTGTCT
59.286
40.000
0.00
0.00
31.45
3.41
230
231
4.817517
ACCCAGTACTTCGTATTTGTCTG
58.182
43.478
0.00
0.00
0.00
3.51
231
232
3.617263
CCCAGTACTTCGTATTTGTCTGC
59.383
47.826
0.00
0.00
0.00
4.26
232
233
3.617263
CCAGTACTTCGTATTTGTCTGCC
59.383
47.826
0.00
0.00
0.00
4.85
233
234
3.303495
CAGTACTTCGTATTTGTCTGCCG
59.697
47.826
0.00
0.00
0.00
5.69
234
235
2.450609
ACTTCGTATTTGTCTGCCGT
57.549
45.000
0.00
0.00
0.00
5.68
235
236
2.762745
ACTTCGTATTTGTCTGCCGTT
58.237
42.857
0.00
0.00
0.00
4.44
236
237
3.916761
ACTTCGTATTTGTCTGCCGTTA
58.083
40.909
0.00
0.00
0.00
3.18
237
238
3.924686
ACTTCGTATTTGTCTGCCGTTAG
59.075
43.478
0.00
0.00
0.00
2.34
238
239
3.853831
TCGTATTTGTCTGCCGTTAGA
57.146
42.857
0.00
0.00
0.00
2.10
239
240
4.380841
TCGTATTTGTCTGCCGTTAGAT
57.619
40.909
0.00
0.00
0.00
1.98
240
241
4.357142
TCGTATTTGTCTGCCGTTAGATC
58.643
43.478
0.00
0.00
0.00
2.75
241
242
3.179795
CGTATTTGTCTGCCGTTAGATCG
59.820
47.826
0.00
0.00
0.00
3.69
242
243
3.520290
ATTTGTCTGCCGTTAGATCGA
57.480
42.857
0.00
0.00
0.00
3.59
243
244
2.273370
TTGTCTGCCGTTAGATCGAC
57.727
50.000
0.00
0.00
0.00
4.20
244
245
1.170442
TGTCTGCCGTTAGATCGACA
58.830
50.000
0.00
0.00
0.00
4.35
245
246
1.749063
TGTCTGCCGTTAGATCGACAT
59.251
47.619
0.00
0.00
0.00
3.06
246
247
2.223502
TGTCTGCCGTTAGATCGACATC
60.224
50.000
0.00
0.00
0.00
3.06
247
248
2.021457
TCTGCCGTTAGATCGACATCA
58.979
47.619
0.00
0.37
0.00
3.07
248
249
2.425668
TCTGCCGTTAGATCGACATCAA
59.574
45.455
0.00
0.00
0.00
2.57
249
250
2.535984
CTGCCGTTAGATCGACATCAAC
59.464
50.000
0.00
0.00
0.00
3.18
250
251
1.517276
GCCGTTAGATCGACATCAACG
59.483
52.381
13.42
13.42
40.02
4.10
251
252
2.793585
GCCGTTAGATCGACATCAACGA
60.794
50.000
19.06
0.00
41.29
3.85
252
253
3.431856
CCGTTAGATCGACATCAACGAA
58.568
45.455
19.06
0.00
41.29
3.85
253
254
3.239941
CCGTTAGATCGACATCAACGAAC
59.760
47.826
19.06
0.00
41.29
3.95
254
255
3.062707
CGTTAGATCGACATCAACGAACG
60.063
47.826
14.62
9.92
41.29
3.95
255
256
1.909376
AGATCGACATCAACGAACGG
58.091
50.000
0.00
0.00
42.80
4.44
256
257
1.201647
AGATCGACATCAACGAACGGT
59.798
47.619
0.00
0.00
42.80
4.83
257
258
1.990563
GATCGACATCAACGAACGGTT
59.009
47.619
0.00
0.00
42.80
4.44
258
259
1.411394
TCGACATCAACGAACGGTTC
58.589
50.000
10.83
10.83
36.49
3.62
259
260
1.001048
TCGACATCAACGAACGGTTCT
60.001
47.619
17.94
3.54
36.49
3.01
260
261
2.226200
TCGACATCAACGAACGGTTCTA
59.774
45.455
17.94
2.54
36.49
2.10
261
262
2.981805
CGACATCAACGAACGGTTCTAA
59.018
45.455
17.94
2.24
36.49
2.10
262
263
3.426191
CGACATCAACGAACGGTTCTAAA
59.574
43.478
17.94
2.56
36.49
1.85
263
264
4.084952
CGACATCAACGAACGGTTCTAAAA
60.085
41.667
17.94
2.89
36.49
1.52
264
265
5.556758
CGACATCAACGAACGGTTCTAAAAA
60.557
40.000
17.94
1.59
36.49
1.94
285
286
6.614694
AAAAACCCAACCACTCTAAAACTT
57.385
33.333
0.00
0.00
0.00
2.66
286
287
5.592104
AAACCCAACCACTCTAAAACTTG
57.408
39.130
0.00
0.00
0.00
3.16
287
288
4.245251
ACCCAACCACTCTAAAACTTGT
57.755
40.909
0.00
0.00
0.00
3.16
288
289
5.376756
ACCCAACCACTCTAAAACTTGTA
57.623
39.130
0.00
0.00
0.00
2.41
410
416
3.806625
ACTGTTTGCACAATTCAGCTT
57.193
38.095
12.69
0.00
30.36
3.74
435
441
6.815641
TCTTTCAGCAGTCAGTCAATAGATTC
59.184
38.462
0.00
0.00
0.00
2.52
469
475
6.286758
TGTCAAATAAAACCATGCATGTTGT
58.713
32.000
24.58
13.80
0.00
3.32
471
477
6.423302
GTCAAATAAAACCATGCATGTTGTCA
59.577
34.615
24.58
7.85
0.00
3.58
537
544
1.429463
GTCACCTGGTTAACAGCGAG
58.571
55.000
8.10
0.00
46.14
5.03
541
548
1.623811
ACCTGGTTAACAGCGAGTCAT
59.376
47.619
8.10
0.00
46.14
3.06
546
553
4.854399
TGGTTAACAGCGAGTCATTTTTG
58.146
39.130
8.10
0.00
0.00
2.44
565
573
8.872845
CATTTTTGGTTGTAGAATAAAGATGGC
58.127
33.333
7.39
0.00
0.00
4.40
662
670
9.098355
TGTCCGATTTATTAAATTGAGAGTGAG
57.902
33.333
15.25
1.01
34.76
3.51
902
922
5.409826
GTCTGATATTTCCAGAATTAGCCGG
59.590
44.000
0.00
0.00
41.72
6.13
1028
1051
5.516996
TGTCGATCATCCGTAAGTGATAAC
58.483
41.667
0.00
0.00
35.33
1.89
1043
1070
5.575019
AGTGATAACGTGTTGTTTGGAAAC
58.425
37.500
0.00
0.00
42.09
2.78
1133
1161
4.657504
AGATATCCAGAATGCACTTCCTCA
59.342
41.667
0.00
0.00
34.11
3.86
1181
1209
6.314400
TCAAAGAACTACATTATGGTTACCGC
59.686
38.462
0.00
0.00
30.96
5.68
1196
1224
4.023021
GGTTACCGCACTAAGGAGATAGAG
60.023
50.000
0.00
0.00
0.00
2.43
1295
1323
8.432805
CCACATTTCCTGACTTACCTTATAGAT
58.567
37.037
0.00
0.00
0.00
1.98
1456
1492
1.854939
TCCATCAGGAAAGGATGCCAT
59.145
47.619
0.00
0.00
42.23
4.40
2107
2178
2.298411
TAACGGGTAGAATTCGGTGC
57.702
50.000
0.00
0.00
0.00
5.01
2122
2193
5.644977
TTCGGTGCTGATATACTCCATAG
57.355
43.478
0.00
0.00
0.00
2.23
2167
3253
7.559335
TTAGGATCAGATTATACATGCTGGT
57.441
36.000
0.00
0.00
0.00
4.00
2184
3270
3.623510
GCTGGTTAACCTGACTATGCTTC
59.376
47.826
29.72
9.32
37.15
3.86
2225
3311
0.610174
TCGGATGCTTCAACTGCTCT
59.390
50.000
1.64
0.00
0.00
4.09
2337
3423
2.885644
GTGCGCCATCGTCGTGAT
60.886
61.111
4.18
0.00
38.01
3.06
2470
3681
1.173913
ACAAATAAGCTTGACGCCCC
58.826
50.000
9.86
0.00
40.39
5.80
2549
3768
4.070716
GGAAGAAGCATGGATGACATAGG
58.929
47.826
0.00
0.00
37.84
2.57
2551
3770
4.620589
AGAAGCATGGATGACATAGGAG
57.379
45.455
0.00
0.00
37.84
3.69
2552
3771
3.327172
AGAAGCATGGATGACATAGGAGG
59.673
47.826
0.00
0.00
37.84
4.30
2553
3772
1.983691
AGCATGGATGACATAGGAGGG
59.016
52.381
0.00
0.00
37.84
4.30
2554
3773
1.980765
GCATGGATGACATAGGAGGGA
59.019
52.381
0.00
0.00
37.84
4.20
2555
3774
2.027377
GCATGGATGACATAGGAGGGAG
60.027
54.545
0.00
0.00
37.84
4.30
2556
3775
3.514539
CATGGATGACATAGGAGGGAGA
58.485
50.000
0.00
0.00
37.84
3.71
2557
3776
2.964209
TGGATGACATAGGAGGGAGAC
58.036
52.381
0.00
0.00
0.00
3.36
2558
3777
2.247372
TGGATGACATAGGAGGGAGACA
59.753
50.000
0.00
0.00
0.00
3.41
2559
3778
2.630580
GGATGACATAGGAGGGAGACAC
59.369
54.545
0.00
0.00
0.00
3.67
2560
3779
2.919772
TGACATAGGAGGGAGACACA
57.080
50.000
0.00
0.00
0.00
3.72
2561
3780
3.184382
TGACATAGGAGGGAGACACAA
57.816
47.619
0.00
0.00
0.00
3.33
2562
3781
3.516586
TGACATAGGAGGGAGACACAAA
58.483
45.455
0.00
0.00
0.00
2.83
2563
3782
4.104086
TGACATAGGAGGGAGACACAAAT
58.896
43.478
0.00
0.00
0.00
2.32
2582
3801
5.908106
CAAATGTCTTTTGCATTTTCTCGG
58.092
37.500
0.00
0.00
42.54
4.63
2584
3803
4.909696
TGTCTTTTGCATTTTCTCGGAA
57.090
36.364
0.00
0.00
0.00
4.30
2585
3804
5.255710
TGTCTTTTGCATTTTCTCGGAAA
57.744
34.783
0.00
0.00
0.00
3.13
2586
3805
5.655488
TGTCTTTTGCATTTTCTCGGAAAA
58.345
33.333
12.24
12.24
32.50
2.29
2618
3938
0.836400
GACAGAGGAGGGGGACACAA
60.836
60.000
0.00
0.00
0.00
3.33
2619
3939
0.401395
ACAGAGGAGGGGGACACAAA
60.401
55.000
0.00
0.00
0.00
2.83
2620
3940
0.995024
CAGAGGAGGGGGACACAAAT
59.005
55.000
0.00
0.00
0.00
2.32
2621
3941
0.995024
AGAGGAGGGGGACACAAATG
59.005
55.000
0.00
0.00
0.00
2.32
2622
3942
0.698818
GAGGAGGGGGACACAAATGT
59.301
55.000
0.00
0.00
43.71
2.71
2638
3958
4.981776
CAAATGTCTTTTGCGTTTTCTCG
58.018
39.130
0.00
0.00
38.42
4.04
2639
3959
4.545823
AATGTCTTTTGCGTTTTCTCGA
57.454
36.364
0.00
0.00
0.00
4.04
2640
3960
3.585748
TGTCTTTTGCGTTTTCTCGAG
57.414
42.857
5.93
5.93
0.00
4.04
2641
3961
3.191669
TGTCTTTTGCGTTTTCTCGAGA
58.808
40.909
12.08
12.08
0.00
4.04
2642
3962
3.245284
TGTCTTTTGCGTTTTCTCGAGAG
59.755
43.478
15.94
5.09
0.00
3.20
2643
3963
3.489785
GTCTTTTGCGTTTTCTCGAGAGA
59.510
43.478
15.94
8.62
39.12
3.10
2644
3964
4.025979
GTCTTTTGCGTTTTCTCGAGAGAA
60.026
41.667
15.94
14.90
44.94
2.87
2666
3986
2.256117
AAAAACCGACCAGACAGAGG
57.744
50.000
0.00
0.00
0.00
3.69
2667
3987
1.420430
AAAACCGACCAGACAGAGGA
58.580
50.000
0.00
0.00
0.00
3.71
2668
3988
0.969894
AAACCGACCAGACAGAGGAG
59.030
55.000
0.00
0.00
0.00
3.69
2669
3989
0.900647
AACCGACCAGACAGAGGAGG
60.901
60.000
0.00
0.00
35.01
4.30
2670
3990
2.055042
CCGACCAGACAGAGGAGGG
61.055
68.421
0.00
0.00
0.00
4.30
2671
3991
2.055042
CGACCAGACAGAGGAGGGG
61.055
68.421
0.00
0.00
0.00
4.79
2672
3992
1.687493
GACCAGACAGAGGAGGGGG
60.687
68.421
0.00
0.00
0.00
5.40
2673
3993
2.169590
GACCAGACAGAGGAGGGGGA
62.170
65.000
0.00
0.00
0.00
4.81
2674
3994
1.687493
CCAGACAGAGGAGGGGGAC
60.687
68.421
0.00
0.00
0.00
4.46
2675
3995
1.390125
CAGACAGAGGAGGGGGACT
59.610
63.158
0.00
0.00
0.00
3.85
2683
4003
2.592512
AGAGGAGGGGGACTAATCTCAA
59.407
50.000
0.00
0.00
0.00
3.02
2718
4038
4.645136
TGTAGTCGTATCTGGCTGAGATTT
59.355
41.667
0.00
0.00
41.94
2.17
2719
4039
4.744795
AGTCGTATCTGGCTGAGATTTT
57.255
40.909
0.00
0.00
41.94
1.82
2726
4046
6.652481
CGTATCTGGCTGAGATTTTATTGGAT
59.348
38.462
0.00
0.00
41.94
3.41
2727
4047
7.173907
CGTATCTGGCTGAGATTTTATTGGATT
59.826
37.037
0.00
0.00
41.94
3.01
2785
4106
5.144159
TCCTCTCCATAGGACTATGTTGT
57.856
43.478
15.89
0.00
40.86
3.32
2805
4126
5.242069
TGTCGTGAACAAACATCAAACAT
57.758
34.783
0.00
0.00
34.03
2.71
2807
4128
5.034152
GTCGTGAACAAACATCAAACATGT
58.966
37.500
0.00
0.00
0.00
3.21
2838
4159
2.291089
TGCCTGATGATCAACACCATGT
60.291
45.455
0.00
0.00
0.00
3.21
2865
4186
1.153289
CTTGATGCCACTCCGAGGG
60.153
63.158
0.00
0.00
0.00
4.30
2913
4234
6.426937
CGAGAAATAATTATTCCCATCACCGT
59.573
38.462
11.08
0.00
0.00
4.83
2945
4266
2.448153
TTCACCGACGACGAAGACCG
62.448
60.000
9.28
0.00
42.66
4.79
2956
4277
0.514255
CGAAGACCGTACGAGACACA
59.486
55.000
18.76
0.00
0.00
3.72
2960
4281
0.179230
GACCGTACGAGACACAGACG
60.179
60.000
18.76
0.00
0.00
4.18
2964
4285
1.676635
TACGAGACACAGACGGGGG
60.677
63.158
0.00
0.00
0.00
5.40
2967
4288
3.591254
GAGACACAGACGGGGGCAC
62.591
68.421
0.00
0.00
0.00
5.01
2973
4294
4.371417
AGACGGGGGCACGACCTA
62.371
66.667
7.82
0.00
39.10
3.08
3062
4383
1.679944
CCTCAATGGGATGCAAGTCGT
60.680
52.381
0.00
0.00
0.00
4.34
3079
4400
1.532078
GTCTCCCGATCCCCTCTCC
60.532
68.421
0.00
0.00
0.00
3.71
3121
4443
5.856455
GGAAATGGTGTCAACTCGTTATTTG
59.144
40.000
0.00
0.00
0.00
2.32
3126
4448
6.717413
TGGTGTCAACTCGTTATTTGTTTAC
58.283
36.000
0.00
0.00
0.00
2.01
3430
5239
9.546428
AAAATGAAGTAAAAGGAAACCATGAAG
57.454
29.630
0.00
0.00
0.00
3.02
3470
5279
3.731547
TGGGCTGGTCCAGAGATG
58.268
61.111
23.77
0.00
36.21
2.90
3471
5280
1.080907
TGGGCTGGTCCAGAGATGA
59.919
57.895
23.77
0.00
36.21
2.92
3472
5281
0.326904
TGGGCTGGTCCAGAGATGAT
60.327
55.000
23.77
0.00
36.21
2.45
3473
5282
0.396060
GGGCTGGTCCAGAGATGATC
59.604
60.000
23.77
2.39
36.21
2.92
3474
5283
1.126488
GGCTGGTCCAGAGATGATCA
58.874
55.000
23.77
0.00
32.44
2.92
3475
5284
1.070445
GGCTGGTCCAGAGATGATCAG
59.930
57.143
23.77
0.00
42.63
2.90
3476
5285
2.529780
CTGGTCCAGAGATGATCAGC
57.470
55.000
14.26
1.78
34.45
4.26
3477
5286
2.040939
CTGGTCCAGAGATGATCAGCT
58.959
52.381
14.53
14.53
34.45
4.24
3478
5287
2.036217
CTGGTCCAGAGATGATCAGCTC
59.964
54.545
29.36
29.36
43.71
4.09
3479
5288
2.037901
GGTCCAGAGATGATCAGCTCA
58.962
52.381
35.31
17.70
45.64
4.26
3480
5289
2.036217
GGTCCAGAGATGATCAGCTCAG
59.964
54.545
35.31
28.96
45.64
3.35
3481
5290
1.687660
TCCAGAGATGATCAGCTCAGC
59.312
52.381
35.31
15.61
45.64
4.26
3482
5291
1.270412
CCAGAGATGATCAGCTCAGCC
60.270
57.143
35.31
15.27
45.64
4.85
3483
5292
1.050204
AGAGATGATCAGCTCAGCCC
58.950
55.000
35.31
14.92
45.64
5.19
3484
5293
0.757512
GAGATGATCAGCTCAGCCCA
59.242
55.000
31.00
0.00
41.33
5.36
3485
5294
0.469070
AGATGATCAGCTCAGCCCAC
59.531
55.000
7.89
0.00
41.33
4.61
3486
5295
0.879400
GATGATCAGCTCAGCCCACG
60.879
60.000
3.07
0.00
37.28
4.94
3487
5296
2.894387
GATCAGCTCAGCCCACGC
60.894
66.667
0.00
0.00
0.00
5.34
3488
5297
3.670637
GATCAGCTCAGCCCACGCA
62.671
63.158
0.00
0.00
37.52
5.24
3489
5298
3.677284
ATCAGCTCAGCCCACGCAG
62.677
63.158
0.00
0.00
37.52
5.18
3504
5313
4.452733
CAGCCTCCCCGACGAACC
62.453
72.222
0.00
0.00
0.00
3.62
3505
5314
4.698625
AGCCTCCCCGACGAACCT
62.699
66.667
0.00
0.00
0.00
3.50
3506
5315
4.452733
GCCTCCCCGACGAACCTG
62.453
72.222
0.00
0.00
0.00
4.00
3507
5316
3.771160
CCTCCCCGACGAACCTGG
61.771
72.222
0.00
0.00
0.00
4.45
3508
5317
3.771160
CTCCCCGACGAACCTGGG
61.771
72.222
0.00
0.00
42.92
4.45
3509
5318
4.626402
TCCCCGACGAACCTGGGT
62.626
66.667
0.00
0.00
41.63
4.51
3510
5319
4.078516
CCCCGACGAACCTGGGTC
62.079
72.222
0.28
0.28
41.63
4.46
3515
5324
3.637297
GACGAACCTGGGTCGTATC
57.363
57.895
36.95
23.09
40.37
2.24
3516
5325
0.101939
GACGAACCTGGGTCGTATCC
59.898
60.000
36.95
22.37
40.37
2.59
3517
5326
0.324091
ACGAACCTGGGTCGTATCCT
60.324
55.000
36.22
13.34
38.39
3.24
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
2.726351
CGCCCTCTCCTCCAAGTCC
61.726
68.421
0.00
0.00
0.00
3.85
2
3
2.726351
CCGCCCTCTCCTCCAAGTC
61.726
68.421
0.00
0.00
0.00
3.01
3
4
2.685380
CCGCCCTCTCCTCCAAGT
60.685
66.667
0.00
0.00
0.00
3.16
4
5
2.364317
TCCGCCCTCTCCTCCAAG
60.364
66.667
0.00
0.00
0.00
3.61
5
6
2.243774
ATCTCCGCCCTCTCCTCCAA
62.244
60.000
0.00
0.00
0.00
3.53
6
7
2.705487
ATCTCCGCCCTCTCCTCCA
61.705
63.158
0.00
0.00
0.00
3.86
7
8
2.200092
ATCTCCGCCCTCTCCTCC
59.800
66.667
0.00
0.00
0.00
4.30
8
9
2.206536
CCATCTCCGCCCTCTCCTC
61.207
68.421
0.00
0.00
0.00
3.71
9
10
2.123077
CCATCTCCGCCCTCTCCT
60.123
66.667
0.00
0.00
0.00
3.69
10
11
3.934962
GCCATCTCCGCCCTCTCC
61.935
72.222
0.00
0.00
0.00
3.71
11
12
3.934962
GGCCATCTCCGCCCTCTC
61.935
72.222
0.00
0.00
40.78
3.20
19
20
1.006805
CTCATCGACGGCCATCTCC
60.007
63.158
2.24
0.00
0.00
3.71
20
21
0.952280
TACTCATCGACGGCCATCTC
59.048
55.000
2.24
0.00
0.00
2.75
21
22
1.399714
TTACTCATCGACGGCCATCT
58.600
50.000
2.24
0.00
0.00
2.90
22
23
2.440539
ATTACTCATCGACGGCCATC
57.559
50.000
2.24
0.00
0.00
3.51
23
24
2.158957
ACAATTACTCATCGACGGCCAT
60.159
45.455
2.24
0.00
0.00
4.40
24
25
1.206132
ACAATTACTCATCGACGGCCA
59.794
47.619
2.24
0.00
0.00
5.36
25
26
1.593006
CACAATTACTCATCGACGGCC
59.407
52.381
0.00
0.00
0.00
6.13
26
27
1.593006
CCACAATTACTCATCGACGGC
59.407
52.381
0.00
0.00
0.00
5.68
27
28
3.159353
TCCACAATTACTCATCGACGG
57.841
47.619
0.00
0.00
0.00
4.79
28
29
3.551890
CCTTCCACAATTACTCATCGACG
59.448
47.826
0.00
0.00
0.00
5.12
29
30
4.330074
CACCTTCCACAATTACTCATCGAC
59.670
45.833
0.00
0.00
0.00
4.20
30
31
4.020573
ACACCTTCCACAATTACTCATCGA
60.021
41.667
0.00
0.00
0.00
3.59
31
32
4.253685
ACACCTTCCACAATTACTCATCG
58.746
43.478
0.00
0.00
0.00
3.84
32
33
5.294552
GCTACACCTTCCACAATTACTCATC
59.705
44.000
0.00
0.00
0.00
2.92
33
34
5.186198
GCTACACCTTCCACAATTACTCAT
58.814
41.667
0.00
0.00
0.00
2.90
34
35
4.041075
TGCTACACCTTCCACAATTACTCA
59.959
41.667
0.00
0.00
0.00
3.41
35
36
4.392138
GTGCTACACCTTCCACAATTACTC
59.608
45.833
0.00
0.00
0.00
2.59
36
37
4.324267
GTGCTACACCTTCCACAATTACT
58.676
43.478
0.00
0.00
0.00
2.24
37
38
4.680171
GTGCTACACCTTCCACAATTAC
57.320
45.455
0.00
0.00
0.00
1.89
50
51
3.508840
GCCGCCATGGTGCTACAC
61.509
66.667
20.39
2.49
41.21
2.90
57
58
3.679738
CAAAACCGCCGCCATGGT
61.680
61.111
14.67
0.00
41.21
3.55
59
60
3.646023
ATGCAAAACCGCCGCCATG
62.646
57.895
0.00
0.00
0.00
3.66
60
61
2.834034
GAATGCAAAACCGCCGCCAT
62.834
55.000
0.00
0.00
0.00
4.40
61
62
3.565910
GAATGCAAAACCGCCGCCA
62.566
57.895
0.00
0.00
0.00
5.69
62
63
2.809174
GAATGCAAAACCGCCGCC
60.809
61.111
0.00
0.00
0.00
6.13
63
64
3.171911
CGAATGCAAAACCGCCGC
61.172
61.111
0.00
0.00
0.00
6.53
64
65
1.795962
GTCGAATGCAAAACCGCCG
60.796
57.895
0.00
0.00
0.00
6.46
65
66
1.795962
CGTCGAATGCAAAACCGCC
60.796
57.895
0.00
0.00
0.00
6.13
66
67
0.789383
CTCGTCGAATGCAAAACCGC
60.789
55.000
0.00
0.00
0.00
5.68
67
68
0.787787
TCTCGTCGAATGCAAAACCG
59.212
50.000
0.00
0.00
0.00
4.44
68
69
1.128692
CCTCTCGTCGAATGCAAAACC
59.871
52.381
0.00
0.00
0.00
3.27
69
70
1.128692
CCCTCTCGTCGAATGCAAAAC
59.871
52.381
0.00
0.00
0.00
2.43
70
71
1.438651
CCCTCTCGTCGAATGCAAAA
58.561
50.000
0.00
0.00
0.00
2.44
71
72
0.391130
CCCCTCTCGTCGAATGCAAA
60.391
55.000
0.00
0.00
0.00
3.68
72
73
1.218047
CCCCTCTCGTCGAATGCAA
59.782
57.895
0.00
0.00
0.00
4.08
73
74
2.892640
CCCCTCTCGTCGAATGCA
59.107
61.111
0.00
0.00
0.00
3.96
74
75
2.586357
GCCCCTCTCGTCGAATGC
60.586
66.667
0.00
0.00
0.00
3.56
75
76
2.278857
CGCCCCTCTCGTCGAATG
60.279
66.667
0.00
0.00
0.00
2.67
76
77
3.528370
CCGCCCCTCTCGTCGAAT
61.528
66.667
0.00
0.00
0.00
3.34
90
91
3.333898
GAAAATTTGCACGCGCCGC
62.334
57.895
5.73
10.65
37.32
6.53
91
92
2.715849
GGAAAATTTGCACGCGCCG
61.716
57.895
5.73
0.00
37.32
6.46
92
93
0.109504
TAGGAAAATTTGCACGCGCC
60.110
50.000
5.73
0.00
37.32
6.53
93
94
1.259316
CTAGGAAAATTTGCACGCGC
58.741
50.000
5.73
0.00
39.24
6.86
94
95
1.466950
TCCTAGGAAAATTTGCACGCG
59.533
47.619
9.71
3.53
0.00
6.01
95
96
2.488153
AGTCCTAGGAAAATTTGCACGC
59.512
45.455
14.65
0.00
0.00
5.34
96
97
5.873179
TTAGTCCTAGGAAAATTTGCACG
57.127
39.130
14.65
0.00
0.00
5.34
97
98
7.084486
CAGTTTAGTCCTAGGAAAATTTGCAC
58.916
38.462
14.65
6.00
0.00
4.57
98
99
6.294508
GCAGTTTAGTCCTAGGAAAATTTGCA
60.295
38.462
25.23
7.46
0.00
4.08
99
100
6.093404
GCAGTTTAGTCCTAGGAAAATTTGC
58.907
40.000
14.65
18.89
0.00
3.68
100
101
6.350194
GGGCAGTTTAGTCCTAGGAAAATTTG
60.350
42.308
14.65
14.01
0.00
2.32
101
102
5.715279
GGGCAGTTTAGTCCTAGGAAAATTT
59.285
40.000
14.65
1.97
0.00
1.82
102
103
5.262009
GGGCAGTTTAGTCCTAGGAAAATT
58.738
41.667
14.65
5.58
0.00
1.82
103
104
4.325109
GGGGCAGTTTAGTCCTAGGAAAAT
60.325
45.833
14.65
5.30
32.56
1.82
104
105
3.009805
GGGGCAGTTTAGTCCTAGGAAAA
59.990
47.826
14.65
8.88
32.56
2.29
105
106
2.574824
GGGGCAGTTTAGTCCTAGGAAA
59.425
50.000
14.65
1.76
32.56
3.13
106
107
2.193993
GGGGCAGTTTAGTCCTAGGAA
58.806
52.381
14.65
0.00
32.56
3.36
107
108
1.365028
AGGGGCAGTTTAGTCCTAGGA
59.635
52.381
7.62
7.62
32.56
2.94
108
109
1.880941
AGGGGCAGTTTAGTCCTAGG
58.119
55.000
0.82
0.82
32.56
3.02
109
110
6.936968
AATATAGGGGCAGTTTAGTCCTAG
57.063
41.667
0.00
0.00
34.10
3.02
110
111
8.802057
TTTAATATAGGGGCAGTTTAGTCCTA
57.198
34.615
0.00
0.00
34.96
2.94
111
112
7.701257
TTTAATATAGGGGCAGTTTAGTCCT
57.299
36.000
0.00
0.00
32.56
3.85
112
113
7.041576
CGTTTTAATATAGGGGCAGTTTAGTCC
60.042
40.741
0.00
0.00
0.00
3.85
113
114
7.519488
GCGTTTTAATATAGGGGCAGTTTAGTC
60.519
40.741
0.00
0.00
0.00
2.59
114
115
6.261603
GCGTTTTAATATAGGGGCAGTTTAGT
59.738
38.462
0.00
0.00
0.00
2.24
115
116
6.565247
CGCGTTTTAATATAGGGGCAGTTTAG
60.565
42.308
0.00
0.00
0.00
1.85
116
117
5.236911
CGCGTTTTAATATAGGGGCAGTTTA
59.763
40.000
0.00
0.00
0.00
2.01
117
118
4.035909
CGCGTTTTAATATAGGGGCAGTTT
59.964
41.667
0.00
0.00
0.00
2.66
118
119
3.562557
CGCGTTTTAATATAGGGGCAGTT
59.437
43.478
0.00
0.00
0.00
3.16
119
120
3.135994
CGCGTTTTAATATAGGGGCAGT
58.864
45.455
0.00
0.00
0.00
4.40
120
121
3.135994
ACGCGTTTTAATATAGGGGCAG
58.864
45.455
5.58
0.00
0.00
4.85
121
122
3.132925
GACGCGTTTTAATATAGGGGCA
58.867
45.455
15.53
0.00
0.00
5.36
122
123
2.481568
GGACGCGTTTTAATATAGGGGC
59.518
50.000
15.53
0.00
0.00
5.80
123
124
3.069289
GGGACGCGTTTTAATATAGGGG
58.931
50.000
15.53
0.00
0.00
4.79
124
125
3.069289
GGGGACGCGTTTTAATATAGGG
58.931
50.000
15.53
0.00
0.00
3.53
125
126
3.495753
GTGGGGACGCGTTTTAATATAGG
59.504
47.826
15.53
0.00
0.00
2.57
126
127
3.495753
GGTGGGGACGCGTTTTAATATAG
59.504
47.826
15.53
0.00
43.50
1.31
127
128
3.134442
AGGTGGGGACGCGTTTTAATATA
59.866
43.478
15.53
0.00
43.50
0.86
128
129
2.092807
AGGTGGGGACGCGTTTTAATAT
60.093
45.455
15.53
0.00
43.50
1.28
129
130
1.278699
AGGTGGGGACGCGTTTTAATA
59.721
47.619
15.53
0.00
43.50
0.98
130
131
0.037160
AGGTGGGGACGCGTTTTAAT
59.963
50.000
15.53
0.00
43.50
1.40
131
132
0.179023
AAGGTGGGGACGCGTTTTAA
60.179
50.000
15.53
0.00
45.82
1.52
132
133
0.885596
CAAGGTGGGGACGCGTTTTA
60.886
55.000
15.53
0.00
45.82
1.52
133
134
2.190841
CAAGGTGGGGACGCGTTTT
61.191
57.895
15.53
0.00
45.82
2.43
134
135
2.593436
CAAGGTGGGGACGCGTTT
60.593
61.111
15.53
0.00
45.82
3.60
136
137
4.309950
GACAAGGTGGGGACGCGT
62.310
66.667
13.85
13.85
43.50
6.01
137
138
4.308458
TGACAAGGTGGGGACGCG
62.308
66.667
3.53
3.53
43.50
6.01
138
139
2.668550
GTGACAAGGTGGGGACGC
60.669
66.667
0.00
0.00
41.20
5.19
139
140
2.357034
CGTGACAAGGTGGGGACG
60.357
66.667
0.00
0.00
0.00
4.79
140
141
1.004918
CTCGTGACAAGGTGGGGAC
60.005
63.158
0.00
0.00
0.00
4.46
141
142
0.178955
TACTCGTGACAAGGTGGGGA
60.179
55.000
0.00
0.00
0.00
4.81
142
143
0.037605
GTACTCGTGACAAGGTGGGG
60.038
60.000
0.00
0.00
0.00
4.96
143
144
0.037605
GGTACTCGTGACAAGGTGGG
60.038
60.000
0.00
0.00
0.00
4.61
144
145
0.388134
CGGTACTCGTGACAAGGTGG
60.388
60.000
0.00
0.00
0.00
4.61
145
146
0.388134
CCGGTACTCGTGACAAGGTG
60.388
60.000
0.00
0.00
37.11
4.00
146
147
1.962144
CCGGTACTCGTGACAAGGT
59.038
57.895
0.00
0.00
37.11
3.50
147
148
1.445582
GCCGGTACTCGTGACAAGG
60.446
63.158
1.90
0.00
37.11
3.61
148
149
1.445582
GGCCGGTACTCGTGACAAG
60.446
63.158
1.90
0.00
37.11
3.16
149
150
2.652530
GGCCGGTACTCGTGACAA
59.347
61.111
1.90
0.00
37.11
3.18
150
151
3.376078
GGGCCGGTACTCGTGACA
61.376
66.667
1.90
0.00
37.11
3.58
151
152
4.139234
GGGGCCGGTACTCGTGAC
62.139
72.222
1.90
0.00
37.11
3.67
152
153
4.682334
TGGGGCCGGTACTCGTGA
62.682
66.667
1.90
0.00
37.11
4.35
153
154
4.446413
GTGGGGCCGGTACTCGTG
62.446
72.222
1.90
0.00
37.11
4.35
154
155
4.691359
AGTGGGGCCGGTACTCGT
62.691
66.667
1.90
0.00
37.11
4.18
155
156
3.834799
GAGTGGGGCCGGTACTCG
61.835
72.222
15.38
0.00
32.48
4.18
156
157
3.834799
CGAGTGGGGCCGGTACTC
61.835
72.222
18.69
18.69
37.93
2.59
157
158
4.691359
ACGAGTGGGGCCGGTACT
62.691
66.667
1.90
6.45
0.00
2.73
158
159
2.736579
AAAACGAGTGGGGCCGGTAC
62.737
60.000
1.90
0.00
0.00
3.34
159
160
1.190833
TAAAACGAGTGGGGCCGGTA
61.191
55.000
1.90
0.00
0.00
4.02
160
161
2.459202
CTAAAACGAGTGGGGCCGGT
62.459
60.000
1.90
0.00
0.00
5.28
161
162
1.743995
CTAAAACGAGTGGGGCCGG
60.744
63.158
0.00
0.00
0.00
6.13
162
163
0.247185
TACTAAAACGAGTGGGGCCG
59.753
55.000
0.00
0.00
0.00
6.13
163
164
1.277273
AGTACTAAAACGAGTGGGGCC
59.723
52.381
0.00
0.00
0.00
5.80
164
165
2.756840
AGTACTAAAACGAGTGGGGC
57.243
50.000
0.00
0.00
0.00
5.80
165
166
3.676646
CGAAAGTACTAAAACGAGTGGGG
59.323
47.826
0.00
0.00
0.00
4.96
166
167
3.122445
GCGAAAGTACTAAAACGAGTGGG
59.878
47.826
0.00
0.00
0.00
4.61
167
168
3.181546
CGCGAAAGTACTAAAACGAGTGG
60.182
47.826
0.00
0.00
0.00
4.00
168
169
3.423206
ACGCGAAAGTACTAAAACGAGTG
59.577
43.478
15.93
5.48
33.43
3.51
169
170
3.632189
ACGCGAAAGTACTAAAACGAGT
58.368
40.909
15.93
12.42
0.00
4.18
170
171
5.093751
GTACGCGAAAGTACTAAAACGAG
57.906
43.478
15.93
11.93
42.58
4.18
179
180
3.001365
CCGATGAAAGTACGCGAAAGTAC
60.001
47.826
15.93
4.51
45.31
2.73
180
181
3.119884
TCCGATGAAAGTACGCGAAAGTA
60.120
43.478
15.93
0.00
0.00
2.24
181
182
1.990563
CCGATGAAAGTACGCGAAAGT
59.009
47.619
15.93
0.00
0.00
2.66
182
183
2.256174
TCCGATGAAAGTACGCGAAAG
58.744
47.619
15.93
0.00
0.00
2.62
183
184
2.256174
CTCCGATGAAAGTACGCGAAA
58.744
47.619
15.93
0.00
0.00
3.46
184
185
1.200716
ACTCCGATGAAAGTACGCGAA
59.799
47.619
15.93
0.00
0.00
4.70
185
186
0.806868
ACTCCGATGAAAGTACGCGA
59.193
50.000
15.93
0.00
0.00
5.87
186
187
2.107178
GTACTCCGATGAAAGTACGCG
58.893
52.381
3.53
3.53
38.72
6.01
189
190
4.641989
TGGGTAGTACTCCGATGAAAGTAC
59.358
45.833
0.00
4.85
45.30
2.73
190
191
4.858850
TGGGTAGTACTCCGATGAAAGTA
58.141
43.478
0.00
0.00
0.00
2.24
191
192
3.700038
CTGGGTAGTACTCCGATGAAAGT
59.300
47.826
0.00
0.00
0.00
2.66
192
193
3.700038
ACTGGGTAGTACTCCGATGAAAG
59.300
47.826
0.00
0.00
34.74
2.62
193
194
3.705051
ACTGGGTAGTACTCCGATGAAA
58.295
45.455
0.00
0.00
34.74
2.69
194
195
3.377253
ACTGGGTAGTACTCCGATGAA
57.623
47.619
0.00
0.00
34.74
2.57
216
217
4.171005
TCTAACGGCAGACAAATACGAAG
58.829
43.478
0.00
0.00
0.00
3.79
217
218
4.177165
TCTAACGGCAGACAAATACGAA
57.823
40.909
0.00
0.00
0.00
3.85
218
219
3.853831
TCTAACGGCAGACAAATACGA
57.146
42.857
0.00
0.00
0.00
3.43
219
220
3.179795
CGATCTAACGGCAGACAAATACG
59.820
47.826
0.00
0.00
0.00
3.06
220
221
4.206609
GTCGATCTAACGGCAGACAAATAC
59.793
45.833
0.00
0.00
37.83
1.89
221
222
4.142337
TGTCGATCTAACGGCAGACAAATA
60.142
41.667
0.00
0.00
42.82
1.40
222
223
3.187700
GTCGATCTAACGGCAGACAAAT
58.812
45.455
0.00
0.00
37.83
2.32
223
224
2.029739
TGTCGATCTAACGGCAGACAAA
60.030
45.455
0.00
0.00
42.82
2.83
224
225
1.542472
TGTCGATCTAACGGCAGACAA
59.458
47.619
0.00
0.00
42.82
3.18
225
226
1.170442
TGTCGATCTAACGGCAGACA
58.830
50.000
0.00
0.00
42.82
3.41
230
231
1.517276
CGTTGATGTCGATCTAACGGC
59.483
52.381
14.97
0.00
38.30
5.68
231
232
3.060978
TCGTTGATGTCGATCTAACGG
57.939
47.619
19.50
7.98
40.13
4.44
232
233
3.062707
CGTTCGTTGATGTCGATCTAACG
60.063
47.826
16.02
16.02
40.55
3.18
233
234
3.239941
CCGTTCGTTGATGTCGATCTAAC
59.760
47.826
0.00
0.00
37.18
2.34
234
235
3.119743
ACCGTTCGTTGATGTCGATCTAA
60.120
43.478
0.00
0.00
37.18
2.10
235
236
2.421073
ACCGTTCGTTGATGTCGATCTA
59.579
45.455
0.00
0.00
37.18
1.98
236
237
1.201647
ACCGTTCGTTGATGTCGATCT
59.798
47.619
0.00
0.00
37.18
2.75
237
238
1.625616
ACCGTTCGTTGATGTCGATC
58.374
50.000
0.00
0.00
37.18
3.69
238
239
1.990563
GAACCGTTCGTTGATGTCGAT
59.009
47.619
0.00
0.00
37.18
3.59
239
240
1.001048
AGAACCGTTCGTTGATGTCGA
60.001
47.619
5.62
0.00
33.74
4.20
240
241
1.415374
AGAACCGTTCGTTGATGTCG
58.585
50.000
5.62
0.00
33.74
4.35
241
242
4.977741
TTTAGAACCGTTCGTTGATGTC
57.022
40.909
5.62
0.00
33.74
3.06
242
243
5.738118
TTTTTAGAACCGTTCGTTGATGT
57.262
34.783
5.62
0.00
33.74
3.06
262
263
6.014070
ACAAGTTTTAGAGTGGTTGGGTTTTT
60.014
34.615
0.00
0.00
0.00
1.94
263
264
5.482526
ACAAGTTTTAGAGTGGTTGGGTTTT
59.517
36.000
0.00
0.00
0.00
2.43
264
265
5.020795
ACAAGTTTTAGAGTGGTTGGGTTT
58.979
37.500
0.00
0.00
0.00
3.27
265
266
4.606210
ACAAGTTTTAGAGTGGTTGGGTT
58.394
39.130
0.00
0.00
0.00
4.11
266
267
4.245251
ACAAGTTTTAGAGTGGTTGGGT
57.755
40.909
0.00
0.00
0.00
4.51
267
268
6.715264
AGAATACAAGTTTTAGAGTGGTTGGG
59.285
38.462
0.00
0.00
0.00
4.12
268
269
7.745620
AGAATACAAGTTTTAGAGTGGTTGG
57.254
36.000
0.00
0.00
0.00
3.77
410
416
5.728637
TCTATTGACTGACTGCTGAAAGA
57.271
39.130
0.00
0.00
34.07
2.52
541
548
7.870445
GTGCCATCTTTATTCTACAACCAAAAA
59.130
33.333
0.00
0.00
0.00
1.94
546
553
5.193679
AGGTGCCATCTTTATTCTACAACC
58.806
41.667
0.00
0.00
0.00
3.77
565
573
9.357652
CTTTTACATTCATATGTGGAAAAGGTG
57.642
33.333
23.78
9.69
44.56
4.00
662
670
7.364522
TCGAGCACTCATAAATATTAATGGC
57.635
36.000
0.00
0.00
0.00
4.40
946
967
5.833131
TCTGGATTACCAAAAGCAGAAAACT
59.167
36.000
0.00
0.00
46.32
2.66
1028
1051
2.817538
AGACGTTTCCAAACAACACG
57.182
45.000
3.21
0.00
38.81
4.49
1043
1070
3.793797
AAAAGGGGTTTTGACAAGACG
57.206
42.857
3.04
0.00
0.00
4.18
1133
1161
3.008330
CAGCATAAGAGCTTGAAGCACT
58.992
45.455
20.45
15.85
45.56
4.40
1181
1209
8.684386
TGATACACTTCTCTATCTCCTTAGTG
57.316
38.462
0.00
0.00
37.95
2.74
1196
1224
3.790091
TGCTGCATCTCTGATACACTTC
58.210
45.455
0.00
0.00
0.00
3.01
1456
1492
7.870509
ACTGAGCTGCTTTGATAATATGAAA
57.129
32.000
2.53
0.00
0.00
2.69
1596
1662
5.361571
AGCAGATTTTCACCATATTGCATCA
59.638
36.000
0.00
0.00
33.00
3.07
1933
2000
6.485830
TCCATCTGGTATTCAGTAAGGAAG
57.514
41.667
0.00
0.00
43.76
3.46
2092
2163
2.622064
ATCAGCACCGAATTCTACCC
57.378
50.000
3.52
0.00
0.00
3.69
2167
3253
4.546829
AACGGAAGCATAGTCAGGTTAA
57.453
40.909
0.00
0.00
0.00
2.01
2184
3270
2.534349
CGTGTTCCTATCATCGAAACGG
59.466
50.000
0.00
0.00
0.00
4.44
2225
3311
6.717997
GGTAGTTGGGGTAATTGAAGAAAAGA
59.282
38.462
0.00
0.00
0.00
2.52
2337
3423
0.249280
ACATGTCAGACGCGTGTTCA
60.249
50.000
20.70
15.13
32.75
3.18
2491
3709
0.749091
TCTGCAATGCATCCGAAGGG
60.749
55.000
8.91
0.00
40.98
3.95
2560
3779
5.841810
TCCGAGAAAATGCAAAAGACATTT
58.158
33.333
0.00
0.00
46.85
2.32
2561
3780
5.452078
TCCGAGAAAATGCAAAAGACATT
57.548
34.783
0.00
0.00
39.38
2.71
2562
3781
5.452078
TTCCGAGAAAATGCAAAAGACAT
57.548
34.783
0.00
0.00
0.00
3.06
2563
3782
4.909696
TTCCGAGAAAATGCAAAAGACA
57.090
36.364
0.00
0.00
0.00
3.41
2586
3805
0.537371
CTCTGTCTGGCCGGGTTTTT
60.537
55.000
12.87
0.00
0.00
1.94
2590
3910
4.316823
TCCTCTGTCTGGCCGGGT
62.317
66.667
12.87
0.00
0.00
5.28
2594
3914
3.086600
CCCCTCCTCTGTCTGGCC
61.087
72.222
0.00
0.00
0.00
5.36
2602
3922
0.995024
CATTTGTGTCCCCCTCCTCT
59.005
55.000
0.00
0.00
0.00
3.69
2618
3938
4.272504
TCTCGAGAAAACGCAAAAGACATT
59.727
37.500
14.01
0.00
0.00
2.71
2619
3939
3.807622
TCTCGAGAAAACGCAAAAGACAT
59.192
39.130
14.01
0.00
0.00
3.06
2620
3940
3.191669
TCTCGAGAAAACGCAAAAGACA
58.808
40.909
14.01
0.00
0.00
3.41
2621
3941
3.489785
TCTCTCGAGAAAACGCAAAAGAC
59.510
43.478
17.36
0.00
33.91
3.01
2622
3942
3.713288
TCTCTCGAGAAAACGCAAAAGA
58.287
40.909
17.36
3.08
33.91
2.52
2623
3943
4.452890
TTCTCTCGAGAAAACGCAAAAG
57.547
40.909
17.36
0.47
43.79
2.27
2647
3967
1.766496
TCCTCTGTCTGGTCGGTTTTT
59.234
47.619
0.00
0.00
0.00
1.94
2648
3968
1.344763
CTCCTCTGTCTGGTCGGTTTT
59.655
52.381
0.00
0.00
0.00
2.43
2649
3969
0.969894
CTCCTCTGTCTGGTCGGTTT
59.030
55.000
0.00
0.00
0.00
3.27
2650
3970
0.900647
CCTCCTCTGTCTGGTCGGTT
60.901
60.000
0.00
0.00
0.00
4.44
2651
3971
1.304547
CCTCCTCTGTCTGGTCGGT
60.305
63.158
0.00
0.00
0.00
4.69
2652
3972
2.055042
CCCTCCTCTGTCTGGTCGG
61.055
68.421
0.00
0.00
0.00
4.79
2653
3973
2.055042
CCCCTCCTCTGTCTGGTCG
61.055
68.421
0.00
0.00
0.00
4.79
2654
3974
1.687493
CCCCCTCCTCTGTCTGGTC
60.687
68.421
0.00
0.00
0.00
4.02
2655
3975
2.177518
TCCCCCTCCTCTGTCTGGT
61.178
63.158
0.00
0.00
0.00
4.00
2656
3976
1.687493
GTCCCCCTCCTCTGTCTGG
60.687
68.421
0.00
0.00
0.00
3.86
2657
3977
0.631753
TAGTCCCCCTCCTCTGTCTG
59.368
60.000
0.00
0.00
0.00
3.51
2658
3978
1.394532
TTAGTCCCCCTCCTCTGTCT
58.605
55.000
0.00
0.00
0.00
3.41
2659
3979
2.090999
AGATTAGTCCCCCTCCTCTGTC
60.091
54.545
0.00
0.00
0.00
3.51
2660
3980
1.940957
AGATTAGTCCCCCTCCTCTGT
59.059
52.381
0.00
0.00
0.00
3.41
2661
3981
2.091055
TGAGATTAGTCCCCCTCCTCTG
60.091
54.545
0.00
0.00
0.00
3.35
2662
3982
2.227703
TGAGATTAGTCCCCCTCCTCT
58.772
52.381
0.00
0.00
0.00
3.69
2663
3983
2.777459
TGAGATTAGTCCCCCTCCTC
57.223
55.000
0.00
0.00
0.00
3.71
2664
3984
3.508952
TTTGAGATTAGTCCCCCTCCT
57.491
47.619
0.00
0.00
0.00
3.69
2665
3985
3.523972
ACTTTTGAGATTAGTCCCCCTCC
59.476
47.826
0.00
0.00
0.00
4.30
2666
3986
4.846168
ACTTTTGAGATTAGTCCCCCTC
57.154
45.455
0.00
0.00
0.00
4.30
2667
3987
4.852697
AGAACTTTTGAGATTAGTCCCCCT
59.147
41.667
0.00
0.00
0.00
4.79
2668
3988
5.180810
AGAACTTTTGAGATTAGTCCCCC
57.819
43.478
0.00
0.00
0.00
5.40
2669
3989
7.526142
AAAAGAACTTTTGAGATTAGTCCCC
57.474
36.000
11.04
0.00
40.84
4.81
2683
4003
9.367444
CCAGATACGACTACATAAAAGAACTTT
57.633
33.333
0.00
0.00
0.00
2.66
2718
4038
7.585440
TCTCCATTTCCATCTCAATCCAATAA
58.415
34.615
0.00
0.00
0.00
1.40
2719
4039
7.152942
TCTCCATTTCCATCTCAATCCAATA
57.847
36.000
0.00
0.00
0.00
1.90
2726
4046
6.514870
CGTGTTTTTCTCCATTTCCATCTCAA
60.515
38.462
0.00
0.00
0.00
3.02
2727
4047
5.048782
CGTGTTTTTCTCCATTTCCATCTCA
60.049
40.000
0.00
0.00
0.00
3.27
2785
4106
5.163713
TGACATGTTTGATGTTTGTTCACGA
60.164
36.000
0.00
0.00
31.52
4.35
2798
4119
2.618241
GCAGTTGGTCTGACATGTTTGA
59.382
45.455
10.38
0.00
46.27
2.69
2838
4159
4.319133
GGCATCAAGGAGCCGAAA
57.681
55.556
0.00
0.00
41.70
3.46
2865
4186
3.866449
GCTTTCCCCATGTCGATATCCTC
60.866
52.174
0.00
0.00
0.00
3.71
2870
4191
0.105964
CGGCTTTCCCCATGTCGATA
59.894
55.000
0.00
0.00
29.15
2.92
2913
4234
2.281484
GTGAAGTTGGGGCAGCGA
60.281
61.111
0.00
0.00
0.00
4.93
2945
4266
1.505353
CCCCGTCTGTGTCTCGTAC
59.495
63.158
0.00
0.00
0.00
3.67
2956
4277
3.892104
TTAGGTCGTGCCCCCGTCT
62.892
63.158
0.00
0.00
38.26
4.18
2960
4281
2.532465
GAACCTTAGGTCGTGCCCCC
62.532
65.000
3.62
0.00
33.12
5.40
2964
4285
0.606604
TGAGGAACCTTAGGTCGTGC
59.393
55.000
3.62
0.00
33.12
5.34
3032
4353
2.360350
CATTGAGGCACCGGCACT
60.360
61.111
0.00
0.00
43.71
4.40
3042
4363
1.019673
CGACTTGCATCCCATTGAGG
58.980
55.000
0.00
0.00
37.03
3.86
3062
4383
2.780185
GGGAGAGGGGATCGGGAGA
61.780
68.421
0.00
0.00
46.90
3.71
3072
4393
1.242444
TAGGGTTCCTAGGGAGAGGG
58.758
60.000
9.46
0.00
37.20
4.30
3106
4428
7.632721
TCCTTGTAAACAAATAACGAGTTGAC
58.367
34.615
0.00
0.00
34.26
3.18
3437
5246
0.386113
CCCAGTTAGAGGTAGCTCGC
59.614
60.000
15.91
10.46
0.00
5.03
3466
5275
0.469070
GTGGGCTGAGCTGATCATCT
59.531
55.000
3.72
0.00
37.28
2.90
3467
5276
0.879400
CGTGGGCTGAGCTGATCATC
60.879
60.000
3.72
0.00
37.28
2.92
3468
5277
1.145598
CGTGGGCTGAGCTGATCAT
59.854
57.895
3.72
0.00
37.28
2.45
3469
5278
2.580815
CGTGGGCTGAGCTGATCA
59.419
61.111
3.72
0.00
36.21
2.92
3470
5279
2.894387
GCGTGGGCTGAGCTGATC
60.894
66.667
3.72
0.00
35.83
2.92
3471
5280
3.677284
CTGCGTGGGCTGAGCTGAT
62.677
63.158
3.72
0.00
40.22
2.90
3472
5281
4.383861
CTGCGTGGGCTGAGCTGA
62.384
66.667
3.72
0.00
40.22
4.26
3487
5296
4.452733
GGTTCGTCGGGGAGGCTG
62.453
72.222
0.00
0.00
0.00
4.85
3488
5297
4.698625
AGGTTCGTCGGGGAGGCT
62.699
66.667
0.00
0.00
0.00
4.58
3489
5298
4.452733
CAGGTTCGTCGGGGAGGC
62.453
72.222
0.00
0.00
0.00
4.70
3490
5299
3.771160
CCAGGTTCGTCGGGGAGG
61.771
72.222
0.00
0.00
0.00
4.30
3491
5300
3.771160
CCCAGGTTCGTCGGGGAG
61.771
72.222
0.00
0.00
43.57
4.30
3492
5301
4.626402
ACCCAGGTTCGTCGGGGA
62.626
66.667
10.13
0.00
44.96
4.81
3493
5302
4.078516
GACCCAGGTTCGTCGGGG
62.079
72.222
2.30
2.30
44.96
5.73
3494
5303
4.430765
CGACCCAGGTTCGTCGGG
62.431
72.222
8.47
0.00
46.21
5.14
3497
5306
0.101939
GGATACGACCCAGGTTCGTC
59.898
60.000
16.40
2.31
40.70
4.20
3498
5307
0.324091
AGGATACGACCCAGGTTCGT
60.324
55.000
17.11
17.11
46.39
3.85
3499
5308
2.501492
AGGATACGACCCAGGTTCG
58.499
57.895
4.55
4.55
46.39
3.95
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.