Multiple sequence alignment - TraesCS6D01G099500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G099500 chr6D 100.000 3138 0 0 1 3138 62673484 62676621 0.000000e+00 5795.0
1 TraesCS6D01G099500 chr6D 86.905 420 42 11 2362 2775 62675796 62676208 2.850000e-125 459.0
2 TraesCS6D01G099500 chr6D 86.905 420 42 11 2313 2725 62675845 62676258 2.850000e-125 459.0
3 TraesCS6D01G099500 chr6D 93.798 258 13 3 637 893 62681138 62680883 4.910000e-103 385.0
4 TraesCS6D01G099500 chr6D 87.748 302 30 6 2460 2759 62675796 62676092 2.320000e-91 346.0
5 TraesCS6D01G099500 chr1D 96.423 1901 53 10 637 2526 415452682 415450786 0.000000e+00 3120.0
6 TraesCS6D01G099500 chr1D 94.615 260 12 1 636 893 415449204 415449463 4.870000e-108 401.0
7 TraesCS6D01G099500 chr2D 95.188 1891 73 7 637 2513 568893583 568895469 0.000000e+00 2972.0
8 TraesCS6D01G099500 chr2D 95.645 620 25 1 2520 3137 568895797 568896416 0.000000e+00 994.0
9 TraesCS6D01G099500 chr2D 94.636 261 11 1 636 893 568930507 568930247 4.870000e-108 401.0
10 TraesCS6D01G099500 chr5B 91.023 1994 134 28 636 2599 690271371 690269393 0.000000e+00 2649.0
11 TraesCS6D01G099500 chr5B 84.007 544 54 9 2587 3101 690269136 690268597 2.810000e-135 492.0
12 TraesCS6D01G099500 chr3D 94.373 1546 56 17 958 2492 477828 476303 0.000000e+00 2344.0
13 TraesCS6D01G099500 chr3D 84.644 534 43 10 2548 3056 476123 475604 2.170000e-136 496.0
14 TraesCS6D01G099500 chr3D 89.610 77 8 0 3061 3137 475642 475566 7.160000e-17 99.0
15 TraesCS6D01G099500 chr3B 87.826 2070 158 54 637 2656 766094367 766092342 0.000000e+00 2340.0
16 TraesCS6D01G099500 chr3B 83.294 425 40 14 2191 2610 766092734 766092336 2.300000e-96 363.0
17 TraesCS6D01G099500 chr3B 82.624 282 29 9 2834 3101 766091511 766091236 6.770000e-57 231.0
18 TraesCS6D01G099500 chr3B 87.302 189 19 4 2588 2774 766092059 766091874 8.820000e-51 211.0
19 TraesCS6D01G099500 chr3B 100.000 29 0 0 2841 2869 766091563 766091535 2.000000e-03 54.7
20 TraesCS6D01G099500 chr7B 89.547 1789 133 35 891 2653 44932704 44930944 0.000000e+00 2218.0
21 TraesCS6D01G099500 chr7B 90.257 1714 129 20 914 2602 44930947 44929247 0.000000e+00 2206.0
22 TraesCS6D01G099500 chr7B 88.265 1764 152 39 914 2653 44925791 44924059 0.000000e+00 2060.0
23 TraesCS6D01G099500 chr7B 87.961 1761 156 36 914 2648 44927526 44925796 0.000000e+00 2026.0
24 TraesCS6D01G099500 chr7B 90.290 1102 84 14 914 1997 44924057 44922961 0.000000e+00 1421.0
25 TraesCS6D01G099500 chr7B 88.819 948 69 24 1561 2503 104051461 104052376 0.000000e+00 1129.0
26 TraesCS6D01G099500 chr7B 85.031 815 87 10 2317 3101 44897265 44896456 0.000000e+00 797.0
27 TraesCS6D01G099500 chr7B 88.832 394 36 5 2205 2596 44931338 44930951 7.870000e-131 477.0
28 TraesCS6D01G099500 chr7B 80.667 300 31 15 2776 3053 104052429 104052723 1.140000e-49 207.0
29 TraesCS6D01G099500 chr1B 90.337 921 78 7 1596 2514 136331628 136332539 0.000000e+00 1197.0
30 TraesCS6D01G099500 chr1B 84.631 501 44 16 2586 3056 136332773 136333270 4.740000e-128 468.0
31 TraesCS6D01G099500 chr7D 88.413 630 36 4 637 1259 567742754 567743353 0.000000e+00 725.0
32 TraesCS6D01G099500 chr2B 84.879 496 53 11 2179 2669 131096018 131096496 6.090000e-132 481.0
33 TraesCS6D01G099500 chr2B 93.536 263 16 1 632 893 794864379 794864117 1.060000e-104 390.0
34 TraesCS6D01G099500 chr2B 93.050 259 15 3 637 893 131101171 131100914 2.950000e-100 375.0
35 TraesCS6D01G099500 chr2B 89.000 200 13 2 2902 3092 794839004 794839203 4.040000e-59 239.0
36 TraesCS6D01G099500 chr6A 87.335 379 23 8 232 600 80039565 80039928 8.100000e-111 411.0
37 TraesCS6D01G099500 chr6B 87.209 258 17 9 400 643 136362919 136363174 2.380000e-71 279.0
38 TraesCS6D01G099500 chr6B 89.610 154 8 1 230 383 136361741 136361886 4.130000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G099500 chr6D 62673484 62676621 3137 False 1764.750000 5795 90.389500 1 3138 4 chr6D.!!$F1 3137
1 TraesCS6D01G099500 chr1D 415450786 415452682 1896 True 3120.000000 3120 96.423000 637 2526 1 chr1D.!!$R1 1889
2 TraesCS6D01G099500 chr2D 568893583 568896416 2833 False 1983.000000 2972 95.416500 637 3137 2 chr2D.!!$F1 2500
3 TraesCS6D01G099500 chr5B 690268597 690271371 2774 True 1570.500000 2649 87.515000 636 3101 2 chr5B.!!$R1 2465
4 TraesCS6D01G099500 chr3D 475566 477828 2262 True 979.666667 2344 89.542333 958 3137 3 chr3D.!!$R1 2179
5 TraesCS6D01G099500 chr3B 766091236 766094367 3131 True 639.940000 2340 88.209200 637 3101 5 chr3B.!!$R1 2464
6 TraesCS6D01G099500 chr7B 44922961 44932704 9743 True 1734.666667 2218 89.192000 891 2653 6 chr7B.!!$R2 1762
7 TraesCS6D01G099500 chr7B 44896456 44897265 809 True 797.000000 797 85.031000 2317 3101 1 chr7B.!!$R1 784
8 TraesCS6D01G099500 chr7B 104051461 104052723 1262 False 668.000000 1129 84.743000 1561 3053 2 chr7B.!!$F1 1492
9 TraesCS6D01G099500 chr1B 136331628 136333270 1642 False 832.500000 1197 87.484000 1596 3056 2 chr1B.!!$F1 1460
10 TraesCS6D01G099500 chr7D 567742754 567743353 599 False 725.000000 725 88.413000 637 1259 1 chr7D.!!$F1 622
11 TraesCS6D01G099500 chr6B 136361741 136363174 1433 False 234.000000 279 88.409500 230 643 2 chr6B.!!$F1 413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.032540 CTGGGCATCATCGTCGATCA 59.967 55.0 4.34 0.0 0.00 2.92 F
143 144 0.032540 TGGGCATCATCGTCGATCAG 59.967 55.0 4.34 0.0 0.00 2.90 F
564 565 0.035915 GACAACCTGGGAGAGGAAGC 60.036 60.0 0.00 0.0 46.33 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1004 1268 3.186047 CGCCGTCATTCCACGACC 61.186 66.667 0.0 0.0 42.69 4.79 R
1142 1408 4.455533 GGGGAGAAAATCAAAACAAATGCC 59.544 41.667 0.0 0.0 0.00 4.40 R
2533 5539 0.251121 TTGGGTGCCATCGACAACAT 60.251 50.000 0.0 0.0 31.53 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.747193 CGAGTCAAAATTTCATGACCGG 58.253 45.455 16.03 0.00 45.55 5.28
22 23 3.426159 CGAGTCAAAATTTCATGACCGGG 60.426 47.826 16.03 0.00 45.55 5.73
23 24 2.231235 AGTCAAAATTTCATGACCGGGC 59.769 45.455 16.03 1.57 45.55 6.13
24 25 1.201181 TCAAAATTTCATGACCGGGCG 59.799 47.619 6.32 0.00 0.00 6.13
25 26 0.530288 AAAATTTCATGACCGGGCGG 59.470 50.000 6.32 0.00 42.03 6.13
26 27 1.944234 AAATTTCATGACCGGGCGGC 61.944 55.000 6.32 0.00 39.32 6.53
41 42 4.944372 GGCCCGCTCGGTCGTATG 62.944 72.222 7.59 0.00 0.00 2.39
42 43 4.944372 GCCCGCTCGGTCGTATGG 62.944 72.222 7.59 0.00 0.00 2.74
43 44 3.214123 CCCGCTCGGTCGTATGGA 61.214 66.667 7.59 0.00 0.00 3.41
44 45 2.331805 CCGCTCGGTCGTATGGAG 59.668 66.667 0.00 0.00 0.00 3.86
45 46 2.331805 CGCTCGGTCGTATGGAGG 59.668 66.667 0.00 0.00 0.00 4.30
46 47 2.027751 GCTCGGTCGTATGGAGGC 59.972 66.667 0.00 0.00 0.00 4.70
47 48 2.331805 CTCGGTCGTATGGAGGCG 59.668 66.667 0.00 0.00 0.00 5.52
48 49 3.195591 CTCGGTCGTATGGAGGCGG 62.196 68.421 0.00 0.00 0.00 6.13
49 50 4.280494 CGGTCGTATGGAGGCGGG 62.280 72.222 0.00 0.00 0.00 6.13
50 51 3.152400 GGTCGTATGGAGGCGGGT 61.152 66.667 0.00 0.00 0.00 5.28
51 52 2.728435 GGTCGTATGGAGGCGGGTT 61.728 63.158 0.00 0.00 0.00 4.11
52 53 1.219935 GTCGTATGGAGGCGGGTTT 59.780 57.895 0.00 0.00 0.00 3.27
53 54 0.461135 GTCGTATGGAGGCGGGTTTA 59.539 55.000 0.00 0.00 0.00 2.01
54 55 0.748450 TCGTATGGAGGCGGGTTTAG 59.252 55.000 0.00 0.00 0.00 1.85
55 56 0.249741 CGTATGGAGGCGGGTTTAGG 60.250 60.000 0.00 0.00 0.00 2.69
56 57 0.108019 GTATGGAGGCGGGTTTAGGG 59.892 60.000 0.00 0.00 0.00 3.53
57 58 1.702022 TATGGAGGCGGGTTTAGGGC 61.702 60.000 0.00 0.00 0.00 5.19
58 59 3.723922 GGAGGCGGGTTTAGGGCA 61.724 66.667 0.00 0.00 0.00 5.36
59 60 2.595655 GAGGCGGGTTTAGGGCAT 59.404 61.111 0.00 0.00 0.00 4.40
60 61 1.526225 GAGGCGGGTTTAGGGCATC 60.526 63.158 0.00 0.00 0.00 3.91
61 62 2.518587 GGCGGGTTTAGGGCATCC 60.519 66.667 0.00 0.00 0.00 3.51
62 63 2.595655 GCGGGTTTAGGGCATCCT 59.404 61.111 0.00 0.00 46.96 3.24
63 64 1.823899 GCGGGTTTAGGGCATCCTG 60.824 63.158 0.00 0.00 44.61 3.86
64 65 1.607612 CGGGTTTAGGGCATCCTGT 59.392 57.895 0.00 0.00 44.61 4.00
65 66 0.748005 CGGGTTTAGGGCATCCTGTG 60.748 60.000 0.00 0.00 44.61 3.66
66 67 0.331616 GGGTTTAGGGCATCCTGTGT 59.668 55.000 0.00 0.00 44.61 3.72
67 68 1.562475 GGGTTTAGGGCATCCTGTGTA 59.438 52.381 0.00 0.00 44.61 2.90
68 69 2.421529 GGGTTTAGGGCATCCTGTGTAG 60.422 54.545 0.00 0.00 44.61 2.74
69 70 2.504175 GGTTTAGGGCATCCTGTGTAGA 59.496 50.000 0.00 0.00 44.61 2.59
70 71 3.136626 GGTTTAGGGCATCCTGTGTAGAT 59.863 47.826 0.00 0.00 44.61 1.98
71 72 4.347000 GGTTTAGGGCATCCTGTGTAGATA 59.653 45.833 0.00 0.00 44.61 1.98
72 73 5.298347 GTTTAGGGCATCCTGTGTAGATAC 58.702 45.833 0.00 0.00 44.61 2.24
73 74 3.336509 AGGGCATCCTGTGTAGATACT 57.663 47.619 0.00 0.00 42.98 2.12
74 75 3.235200 AGGGCATCCTGTGTAGATACTC 58.765 50.000 0.00 0.00 42.98 2.59
75 76 3.116939 AGGGCATCCTGTGTAGATACTCT 60.117 47.826 0.00 0.00 42.98 3.24
76 77 3.643792 GGGCATCCTGTGTAGATACTCTT 59.356 47.826 0.00 0.00 0.00 2.85
77 78 4.502259 GGGCATCCTGTGTAGATACTCTTG 60.502 50.000 0.00 0.00 0.00 3.02
78 79 4.100189 GGCATCCTGTGTAGATACTCTTGT 59.900 45.833 0.00 0.00 0.00 3.16
79 80 5.302059 GGCATCCTGTGTAGATACTCTTGTA 59.698 44.000 0.00 0.00 0.00 2.41
80 81 6.210078 GCATCCTGTGTAGATACTCTTGTAC 58.790 44.000 0.00 0.00 0.00 2.90
81 82 6.431278 CATCCTGTGTAGATACTCTTGTACG 58.569 44.000 0.00 0.00 0.00 3.67
82 83 5.737860 TCCTGTGTAGATACTCTTGTACGA 58.262 41.667 0.00 0.00 0.00 3.43
83 84 5.816258 TCCTGTGTAGATACTCTTGTACGAG 59.184 44.000 3.44 3.44 37.07 4.18
84 85 5.585445 CCTGTGTAGATACTCTTGTACGAGT 59.415 44.000 10.00 9.04 45.62 4.18
85 86 6.760298 CCTGTGTAGATACTCTTGTACGAGTA 59.240 42.308 10.00 10.87 46.96 2.59
86 87 7.279536 CCTGTGTAGATACTCTTGTACGAGTAA 59.720 40.741 12.73 0.89 46.28 2.24
87 88 8.728337 TGTGTAGATACTCTTGTACGAGTAAT 57.272 34.615 12.73 8.55 46.28 1.89
88 89 9.822185 TGTGTAGATACTCTTGTACGAGTAATA 57.178 33.333 12.73 7.83 46.28 0.98
103 104 4.843220 AGTAATAATACTCCCACGGTCG 57.157 45.455 0.00 0.00 37.90 4.79
104 105 2.521105 AATAATACTCCCACGGTCGC 57.479 50.000 0.00 0.00 0.00 5.19
105 106 0.677842 ATAATACTCCCACGGTCGCC 59.322 55.000 0.00 0.00 0.00 5.54
106 107 1.394266 TAATACTCCCACGGTCGCCC 61.394 60.000 0.00 0.00 0.00 6.13
107 108 3.674050 ATACTCCCACGGTCGCCCT 62.674 63.158 0.00 0.00 0.00 5.19
110 111 4.051167 TCCCACGGTCGCCCTCTA 62.051 66.667 0.00 0.00 0.00 2.43
111 112 3.528370 CCCACGGTCGCCCTCTAG 61.528 72.222 0.00 0.00 0.00 2.43
112 113 3.528370 CCACGGTCGCCCTCTAGG 61.528 72.222 0.00 0.00 39.47 3.02
137 138 3.643978 GCGCTGGGCATCATCGTC 61.644 66.667 12.19 0.00 42.87 4.20
138 139 3.333189 CGCTGGGCATCATCGTCG 61.333 66.667 0.00 0.00 31.17 5.12
139 140 2.106938 GCTGGGCATCATCGTCGA 59.893 61.111 0.00 0.00 0.00 4.20
140 141 1.301244 GCTGGGCATCATCGTCGAT 60.301 57.895 0.75 0.75 0.00 3.59
141 142 1.287730 GCTGGGCATCATCGTCGATC 61.288 60.000 4.34 0.00 0.00 3.69
142 143 0.032540 CTGGGCATCATCGTCGATCA 59.967 55.000 4.34 0.00 0.00 2.92
143 144 0.032540 TGGGCATCATCGTCGATCAG 59.967 55.000 4.34 0.00 0.00 2.90
144 145 1.287730 GGGCATCATCGTCGATCAGC 61.288 60.000 4.34 9.36 0.00 4.26
145 146 0.319383 GGCATCATCGTCGATCAGCT 60.319 55.000 17.43 0.00 0.00 4.24
146 147 0.782981 GCATCATCGTCGATCAGCTG 59.217 55.000 7.63 7.63 0.00 4.24
147 148 1.867289 GCATCATCGTCGATCAGCTGT 60.867 52.381 14.67 0.42 0.00 4.40
148 149 2.605580 GCATCATCGTCGATCAGCTGTA 60.606 50.000 14.67 0.48 0.00 2.74
149 150 2.757686 TCATCGTCGATCAGCTGTAC 57.242 50.000 14.67 8.14 0.00 2.90
150 151 1.333931 TCATCGTCGATCAGCTGTACC 59.666 52.381 14.67 3.24 0.00 3.34
151 152 1.335182 CATCGTCGATCAGCTGTACCT 59.665 52.381 14.67 0.00 0.00 3.08
152 153 0.733150 TCGTCGATCAGCTGTACCTG 59.267 55.000 14.67 1.04 0.00 4.00
153 154 0.867753 CGTCGATCAGCTGTACCTGC 60.868 60.000 14.67 0.55 32.87 4.85
154 155 0.528684 GTCGATCAGCTGTACCTGCC 60.529 60.000 14.67 0.00 32.87 4.85
155 156 1.227380 CGATCAGCTGTACCTGCCC 60.227 63.158 14.67 0.00 32.87 5.36
156 157 1.680522 CGATCAGCTGTACCTGCCCT 61.681 60.000 14.67 0.00 32.87 5.19
157 158 0.105778 GATCAGCTGTACCTGCCCTC 59.894 60.000 14.67 0.00 32.87 4.30
158 159 1.680522 ATCAGCTGTACCTGCCCTCG 61.681 60.000 14.67 0.00 32.87 4.63
159 160 2.283966 AGCTGTACCTGCCCTCGT 60.284 61.111 4.61 0.00 0.00 4.18
160 161 2.184579 GCTGTACCTGCCCTCGTC 59.815 66.667 0.00 0.00 0.00 4.20
161 162 2.490217 CTGTACCTGCCCTCGTCG 59.510 66.667 0.00 0.00 0.00 5.12
162 163 2.034532 TGTACCTGCCCTCGTCGA 59.965 61.111 0.00 0.00 0.00 4.20
163 164 2.267681 CTGTACCTGCCCTCGTCGAC 62.268 65.000 5.18 5.18 0.00 4.20
164 165 2.753043 TACCTGCCCTCGTCGACC 60.753 66.667 10.58 0.00 0.00 4.79
175 176 4.664677 GTCGACCGCTGCACCTGT 62.665 66.667 3.51 0.00 0.00 4.00
176 177 4.357947 TCGACCGCTGCACCTGTC 62.358 66.667 0.00 0.00 0.00 3.51
178 179 4.357947 GACCGCTGCACCTGTCGA 62.358 66.667 0.00 0.00 0.00 4.20
179 180 4.664677 ACCGCTGCACCTGTCGAC 62.665 66.667 9.11 9.11 0.00 4.20
180 181 4.662961 CCGCTGCACCTGTCGACA 62.663 66.667 18.88 18.88 0.00 4.35
181 182 3.406361 CGCTGCACCTGTCGACAC 61.406 66.667 15.76 5.47 0.00 3.67
182 183 3.044305 GCTGCACCTGTCGACACC 61.044 66.667 15.76 4.06 0.00 4.16
183 184 2.737180 CTGCACCTGTCGACACCT 59.263 61.111 15.76 0.00 0.00 4.00
184 185 1.665916 CTGCACCTGTCGACACCTG 60.666 63.158 15.76 13.30 0.00 4.00
185 186 2.087462 CTGCACCTGTCGACACCTGA 62.087 60.000 15.76 0.00 0.00 3.86
186 187 1.293498 GCACCTGTCGACACCTGAT 59.707 57.895 15.76 0.00 0.00 2.90
187 188 0.737715 GCACCTGTCGACACCTGATC 60.738 60.000 15.76 0.00 0.00 2.92
188 189 0.603065 CACCTGTCGACACCTGATCA 59.397 55.000 15.76 0.00 0.00 2.92
189 190 1.205655 CACCTGTCGACACCTGATCAT 59.794 52.381 15.76 0.00 0.00 2.45
190 191 1.205655 ACCTGTCGACACCTGATCATG 59.794 52.381 15.76 1.06 0.00 3.07
191 192 1.284657 CTGTCGACACCTGATCATGC 58.715 55.000 15.76 0.00 0.00 4.06
192 193 0.108186 TGTCGACACCTGATCATGCC 60.108 55.000 15.76 0.00 0.00 4.40
193 194 1.141665 TCGACACCTGATCATGCCG 59.858 57.895 0.00 0.00 0.00 5.69
194 195 1.141665 CGACACCTGATCATGCCGA 59.858 57.895 0.00 0.00 0.00 5.54
195 196 1.148157 CGACACCTGATCATGCCGAC 61.148 60.000 0.00 0.00 0.00 4.79
196 197 1.148157 GACACCTGATCATGCCGACG 61.148 60.000 0.00 0.00 0.00 5.12
197 198 1.153568 CACCTGATCATGCCGACGT 60.154 57.895 0.00 0.00 0.00 4.34
198 199 0.740868 CACCTGATCATGCCGACGTT 60.741 55.000 0.00 0.00 0.00 3.99
199 200 0.740868 ACCTGATCATGCCGACGTTG 60.741 55.000 0.00 0.00 0.00 4.10
200 201 0.460109 CCTGATCATGCCGACGTTGA 60.460 55.000 3.74 0.00 0.00 3.18
201 202 0.647410 CTGATCATGCCGACGTTGAC 59.353 55.000 3.74 0.00 0.00 3.18
202 203 0.739462 TGATCATGCCGACGTTGACC 60.739 55.000 3.74 0.00 0.00 4.02
203 204 1.752501 GATCATGCCGACGTTGACCG 61.753 60.000 3.74 0.00 44.03 4.79
204 205 4.147322 CATGCCGACGTTGACCGC 62.147 66.667 3.74 0.00 41.42 5.68
218 219 3.409856 CCGCCACGGCATTAGAAG 58.590 61.111 9.11 0.00 41.17 2.85
219 220 2.709475 CGCCACGGCATTAGAAGC 59.291 61.111 9.11 0.00 42.06 3.86
220 221 2.709475 GCCACGGCATTAGAAGCG 59.291 61.111 2.36 0.00 41.49 4.68
221 222 2.709475 CCACGGCATTAGAAGCGC 59.291 61.111 0.00 0.00 0.00 5.92
222 223 2.321060 CACGGCATTAGAAGCGCG 59.679 61.111 0.00 0.00 33.79 6.86
223 224 2.890474 ACGGCATTAGAAGCGCGG 60.890 61.111 8.83 0.00 32.52 6.46
224 225 4.299316 CGGCATTAGAAGCGCGGC 62.299 66.667 8.83 0.00 0.00 6.53
225 226 3.953887 GGCATTAGAAGCGCGGCC 61.954 66.667 8.83 5.48 0.00 6.13
226 227 3.202001 GCATTAGAAGCGCGGCCA 61.202 61.111 8.83 0.00 0.00 5.36
227 228 2.709475 CATTAGAAGCGCGGCCAC 59.291 61.111 8.83 0.00 0.00 5.01
228 229 2.106074 CATTAGAAGCGCGGCCACA 61.106 57.895 8.83 0.00 0.00 4.17
246 247 3.935203 CCACAGTGCTCAGATTTAATCGT 59.065 43.478 0.00 0.00 0.00 3.73
248 249 4.867047 CACAGTGCTCAGATTTAATCGTCT 59.133 41.667 0.00 0.00 0.00 4.18
263 264 3.545574 TCTGGTGTGCTGCGTCCA 61.546 61.111 9.22 9.22 0.00 4.02
264 265 3.349006 CTGGTGTGCTGCGTCCAC 61.349 66.667 7.99 7.99 0.00 4.02
265 266 4.168291 TGGTGTGCTGCGTCCACA 62.168 61.111 15.54 3.35 40.61 4.17
268 269 2.894879 TGTGCTGCGTCCACACAC 60.895 61.111 0.00 0.00 39.29 3.82
269 270 4.000557 GTGCTGCGTCCACACACG 62.001 66.667 0.00 0.00 42.95 4.49
311 312 0.947180 GATGTGCACACCCGTACGTT 60.947 55.000 24.37 1.83 0.00 3.99
312 313 0.533308 ATGTGCACACCCGTACGTTT 60.533 50.000 24.37 0.00 0.00 3.60
338 339 4.111577 TCCCATGGAAAAGTCTGGTCTAT 58.888 43.478 15.22 0.00 0.00 1.98
346 347 6.729100 TGGAAAAGTCTGGTCTATAGGAAGAA 59.271 38.462 0.00 0.00 0.00 2.52
370 371 2.446435 GCATGGAAAGCTCAAAGGGTA 58.554 47.619 0.00 0.00 0.00 3.69
391 392 6.570690 GTAGCTAACCAGTTATTGAAGACG 57.429 41.667 0.00 0.00 0.00 4.18
392 393 5.148651 AGCTAACCAGTTATTGAAGACGT 57.851 39.130 0.00 0.00 0.00 4.34
393 394 5.548406 AGCTAACCAGTTATTGAAGACGTT 58.452 37.500 0.00 0.00 0.00 3.99
394 395 5.408604 AGCTAACCAGTTATTGAAGACGTTG 59.591 40.000 0.00 0.00 0.00 4.10
395 396 5.407387 GCTAACCAGTTATTGAAGACGTTGA 59.593 40.000 0.00 0.00 0.00 3.18
396 397 6.092259 GCTAACCAGTTATTGAAGACGTTGAT 59.908 38.462 0.00 0.00 0.00 2.57
398 399 4.154195 ACCAGTTATTGAAGACGTTGATGC 59.846 41.667 0.00 0.00 0.00 3.91
399 400 4.393062 CCAGTTATTGAAGACGTTGATGCT 59.607 41.667 0.00 0.00 0.00 3.79
400 401 5.319139 CAGTTATTGAAGACGTTGATGCTG 58.681 41.667 0.00 0.00 0.00 4.41
401 402 5.120674 CAGTTATTGAAGACGTTGATGCTGA 59.879 40.000 0.00 0.00 0.00 4.26
402 403 5.877012 AGTTATTGAAGACGTTGATGCTGAT 59.123 36.000 0.00 0.00 0.00 2.90
403 404 4.611310 ATTGAAGACGTTGATGCTGATG 57.389 40.909 0.00 0.00 0.00 3.07
404 405 1.733912 TGAAGACGTTGATGCTGATGC 59.266 47.619 0.00 0.00 40.20 3.91
405 406 2.005451 GAAGACGTTGATGCTGATGCT 58.995 47.619 0.00 0.00 40.48 3.79
406 407 1.366679 AGACGTTGATGCTGATGCTG 58.633 50.000 0.00 0.00 40.48 4.41
407 408 1.066645 AGACGTTGATGCTGATGCTGA 60.067 47.619 0.00 0.00 40.48 4.26
408 409 1.938577 GACGTTGATGCTGATGCTGAT 59.061 47.619 0.00 0.00 40.48 2.90
409 410 1.669265 ACGTTGATGCTGATGCTGATG 59.331 47.619 0.00 0.00 40.48 3.07
410 411 1.597199 CGTTGATGCTGATGCTGATGC 60.597 52.381 0.00 0.00 40.48 3.91
411 412 1.676529 GTTGATGCTGATGCTGATGCT 59.323 47.619 0.00 0.00 40.48 3.79
412 413 1.308998 TGATGCTGATGCTGATGCTG 58.691 50.000 0.00 0.00 40.48 4.41
413 414 0.039978 GATGCTGATGCTGATGCTGC 60.040 55.000 0.00 0.00 40.48 5.25
414 415 0.751643 ATGCTGATGCTGATGCTGCA 60.752 50.000 4.13 4.13 42.03 4.41
415 416 1.356979 GCTGATGCTGATGCTGCAG 59.643 57.895 10.11 10.11 41.22 4.41
438 439 4.521062 GCAGGCGCGTCCTCTCAT 62.521 66.667 17.47 0.00 45.52 2.90
439 440 2.185350 CAGGCGCGTCCTCTCATT 59.815 61.111 17.47 0.00 45.52 2.57
440 441 1.448540 CAGGCGCGTCCTCTCATTT 60.449 57.895 17.47 0.00 45.52 2.32
441 442 1.021390 CAGGCGCGTCCTCTCATTTT 61.021 55.000 17.47 0.00 45.52 1.82
442 443 1.021390 AGGCGCGTCCTCTCATTTTG 61.021 55.000 7.31 0.00 43.20 2.44
443 444 1.226128 GCGCGTCCTCTCATTTTGC 60.226 57.895 8.43 0.00 0.00 3.68
444 445 1.639298 GCGCGTCCTCTCATTTTGCT 61.639 55.000 8.43 0.00 0.00 3.91
445 446 0.798776 CGCGTCCTCTCATTTTGCTT 59.201 50.000 0.00 0.00 0.00 3.91
446 447 1.197721 CGCGTCCTCTCATTTTGCTTT 59.802 47.619 0.00 0.00 0.00 3.51
447 448 2.589014 GCGTCCTCTCATTTTGCTTTG 58.411 47.619 0.00 0.00 0.00 2.77
448 449 2.030805 GCGTCCTCTCATTTTGCTTTGT 60.031 45.455 0.00 0.00 0.00 2.83
449 450 3.550842 GCGTCCTCTCATTTTGCTTTGTT 60.551 43.478 0.00 0.00 0.00 2.83
450 451 4.320202 GCGTCCTCTCATTTTGCTTTGTTA 60.320 41.667 0.00 0.00 0.00 2.41
451 452 5.619981 GCGTCCTCTCATTTTGCTTTGTTAT 60.620 40.000 0.00 0.00 0.00 1.89
452 453 6.381801 CGTCCTCTCATTTTGCTTTGTTATT 58.618 36.000 0.00 0.00 0.00 1.40
453 454 6.306356 CGTCCTCTCATTTTGCTTTGTTATTG 59.694 38.462 0.00 0.00 0.00 1.90
454 455 6.089954 GTCCTCTCATTTTGCTTTGTTATTGC 59.910 38.462 0.00 0.00 0.00 3.56
455 456 5.927689 CCTCTCATTTTGCTTTGTTATTGCA 59.072 36.000 0.00 0.00 34.69 4.08
456 457 6.592607 CCTCTCATTTTGCTTTGTTATTGCAT 59.407 34.615 0.00 0.00 36.55 3.96
457 458 7.354025 TCTCATTTTGCTTTGTTATTGCATG 57.646 32.000 0.00 0.00 36.55 4.06
458 459 6.369340 TCTCATTTTGCTTTGTTATTGCATGG 59.631 34.615 0.00 0.00 36.55 3.66
459 460 6.228995 TCATTTTGCTTTGTTATTGCATGGA 58.771 32.000 0.00 0.00 36.55 3.41
460 461 6.369340 TCATTTTGCTTTGTTATTGCATGGAG 59.631 34.615 0.00 0.00 36.55 3.86
461 462 5.465532 TTTGCTTTGTTATTGCATGGAGA 57.534 34.783 0.00 0.00 36.55 3.71
462 463 5.465532 TTGCTTTGTTATTGCATGGAGAA 57.534 34.783 0.00 0.00 36.55 2.87
463 464 5.465532 TGCTTTGTTATTGCATGGAGAAA 57.534 34.783 0.00 0.00 0.00 2.52
464 465 5.472148 TGCTTTGTTATTGCATGGAGAAAG 58.528 37.500 0.00 0.00 0.00 2.62
465 466 4.328169 GCTTTGTTATTGCATGGAGAAAGC 59.672 41.667 16.68 16.68 37.84 3.51
466 467 5.717119 CTTTGTTATTGCATGGAGAAAGCT 58.283 37.500 0.00 0.00 0.00 3.74
467 468 4.970662 TGTTATTGCATGGAGAAAGCTC 57.029 40.909 0.00 0.00 40.54 4.09
504 505 2.772739 AGCTAAGCTGCGTTCCATG 58.227 52.632 0.00 0.00 37.57 3.66
505 506 0.745845 AGCTAAGCTGCGTTCCATGG 60.746 55.000 4.97 4.97 37.57 3.66
506 507 1.723870 CTAAGCTGCGTTCCATGGC 59.276 57.895 6.96 0.00 0.00 4.40
507 508 1.718757 CTAAGCTGCGTTCCATGGCC 61.719 60.000 6.96 0.00 0.00 5.36
508 509 2.476852 TAAGCTGCGTTCCATGGCCA 62.477 55.000 8.56 8.56 0.00 5.36
509 510 4.120331 GCTGCGTTCCATGGCCAC 62.120 66.667 8.16 5.29 0.00 5.01
510 511 2.672651 CTGCGTTCCATGGCCACA 60.673 61.111 8.16 0.00 0.00 4.17
511 512 2.672651 TGCGTTCCATGGCCACAG 60.673 61.111 8.16 3.15 0.00 3.66
512 513 4.120331 GCGTTCCATGGCCACAGC 62.120 66.667 8.16 10.25 38.76 4.40
513 514 2.360350 CGTTCCATGGCCACAGCT 60.360 61.111 8.16 0.00 39.73 4.24
514 515 1.973281 CGTTCCATGGCCACAGCTT 60.973 57.895 8.16 0.00 39.73 3.74
515 516 1.588082 GTTCCATGGCCACAGCTTG 59.412 57.895 8.16 0.66 39.73 4.01
516 517 1.153524 TTCCATGGCCACAGCTTGT 59.846 52.632 8.16 0.00 39.73 3.16
517 518 0.895100 TTCCATGGCCACAGCTTGTC 60.895 55.000 8.16 0.00 39.73 3.18
518 519 1.303888 CCATGGCCACAGCTTGTCT 60.304 57.895 8.16 0.00 39.73 3.41
519 520 0.896940 CCATGGCCACAGCTTGTCTT 60.897 55.000 8.16 0.00 39.73 3.01
520 521 0.963962 CATGGCCACAGCTTGTCTTT 59.036 50.000 8.16 0.00 39.73 2.52
521 522 1.068055 CATGGCCACAGCTTGTCTTTC 60.068 52.381 8.16 0.00 39.73 2.62
522 523 0.183492 TGGCCACAGCTTGTCTTTCT 59.817 50.000 0.00 0.00 39.73 2.52
523 524 0.877743 GGCCACAGCTTGTCTTTCTC 59.122 55.000 0.00 0.00 39.73 2.87
524 525 1.597742 GCCACAGCTTGTCTTTCTCA 58.402 50.000 0.00 0.00 35.50 3.27
525 526 1.534595 GCCACAGCTTGTCTTTCTCAG 59.465 52.381 0.00 0.00 35.50 3.35
526 527 2.149578 CCACAGCTTGTCTTTCTCAGG 58.850 52.381 0.00 0.00 0.00 3.86
527 528 1.534595 CACAGCTTGTCTTTCTCAGGC 59.465 52.381 0.00 0.00 38.01 4.85
528 529 1.419387 ACAGCTTGTCTTTCTCAGGCT 59.581 47.619 0.00 0.00 46.30 4.58
529 530 2.158696 ACAGCTTGTCTTTCTCAGGCTT 60.159 45.455 0.10 0.00 43.74 4.35
530 531 2.225963 CAGCTTGTCTTTCTCAGGCTTG 59.774 50.000 0.10 0.00 43.74 4.01
531 532 1.068679 GCTTGTCTTTCTCAGGCTTGC 60.069 52.381 0.00 0.00 35.52 4.01
532 533 2.502295 CTTGTCTTTCTCAGGCTTGCT 58.498 47.619 0.00 0.00 0.00 3.91
533 534 1.888215 TGTCTTTCTCAGGCTTGCTG 58.112 50.000 0.00 0.00 0.00 4.41
534 535 1.141657 TGTCTTTCTCAGGCTTGCTGT 59.858 47.619 0.00 0.00 0.00 4.40
535 536 2.225467 GTCTTTCTCAGGCTTGCTGTT 58.775 47.619 0.00 0.00 0.00 3.16
536 537 2.031333 GTCTTTCTCAGGCTTGCTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
537 538 1.268899 CTTTCTCAGGCTTGCTGTTGG 59.731 52.381 0.00 0.00 0.00 3.77
538 539 1.174712 TTCTCAGGCTTGCTGTTGGC 61.175 55.000 0.00 0.00 42.22 4.52
539 540 1.602888 CTCAGGCTTGCTGTTGGCT 60.603 57.895 0.00 0.00 42.39 4.75
541 542 2.196776 AGGCTTGCTGTTGGCTGT 59.803 55.556 0.00 0.00 42.39 4.40
542 543 2.198287 AGGCTTGCTGTTGGCTGTG 61.198 57.895 0.00 0.00 42.39 3.66
543 544 2.355481 GCTTGCTGTTGGCTGTGC 60.355 61.111 0.00 0.00 42.39 4.57
544 545 3.121934 CTTGCTGTTGGCTGTGCA 58.878 55.556 0.00 0.00 42.39 4.57
545 546 1.007734 CTTGCTGTTGGCTGTGCAG 60.008 57.895 0.00 0.00 42.39 4.41
546 547 1.449726 CTTGCTGTTGGCTGTGCAGA 61.450 55.000 3.02 0.00 42.39 4.26
547 548 1.727511 TTGCTGTTGGCTGTGCAGAC 61.728 55.000 3.02 0.00 42.39 3.51
548 549 2.188829 GCTGTTGGCTGTGCAGACA 61.189 57.895 3.21 3.21 46.54 3.41
552 553 2.918248 TGGCTGTGCAGACAACCT 59.082 55.556 5.09 0.00 44.93 3.50
553 554 1.526686 TGGCTGTGCAGACAACCTG 60.527 57.895 5.09 0.00 44.93 4.00
554 555 2.263741 GGCTGTGCAGACAACCTGG 61.264 63.158 3.02 0.00 43.13 4.45
555 556 2.263741 GCTGTGCAGACAACCTGGG 61.264 63.158 3.02 0.00 43.13 4.45
556 557 1.451504 CTGTGCAGACAACCTGGGA 59.548 57.895 0.00 0.00 43.13 4.37
557 558 0.604780 CTGTGCAGACAACCTGGGAG 60.605 60.000 0.00 0.00 43.13 4.30
558 559 1.053835 TGTGCAGACAACCTGGGAGA 61.054 55.000 0.00 0.00 43.13 3.71
559 560 0.321122 GTGCAGACAACCTGGGAGAG 60.321 60.000 0.00 0.00 43.13 3.20
561 562 1.194781 GCAGACAACCTGGGAGAGGA 61.195 60.000 0.00 0.00 46.33 3.71
562 563 1.352083 CAGACAACCTGGGAGAGGAA 58.648 55.000 0.00 0.00 46.33 3.36
563 564 1.277557 CAGACAACCTGGGAGAGGAAG 59.722 57.143 0.00 0.00 46.33 3.46
564 565 0.035915 GACAACCTGGGAGAGGAAGC 60.036 60.000 0.00 0.00 46.33 3.86
565 566 1.078848 CAACCTGGGAGAGGAAGCG 60.079 63.158 0.00 0.00 46.33 4.68
566 567 2.960688 AACCTGGGAGAGGAAGCGC 61.961 63.158 0.00 0.00 46.33 5.92
567 568 4.168291 CCTGGGAGAGGAAGCGCC 62.168 72.222 2.29 0.00 46.33 6.53
577 578 2.017752 GGAAGCGCCTGAATGTAGC 58.982 57.895 2.29 0.00 0.00 3.58
578 579 1.440145 GGAAGCGCCTGAATGTAGCC 61.440 60.000 2.29 0.00 0.00 3.93
579 580 0.744414 GAAGCGCCTGAATGTAGCCA 60.744 55.000 2.29 0.00 0.00 4.75
580 581 0.107017 AAGCGCCTGAATGTAGCCAT 60.107 50.000 2.29 0.00 0.00 4.40
581 582 0.816825 AGCGCCTGAATGTAGCCATG 60.817 55.000 2.29 0.00 0.00 3.66
582 583 0.815213 GCGCCTGAATGTAGCCATGA 60.815 55.000 0.00 0.00 0.00 3.07
583 584 1.888215 CGCCTGAATGTAGCCATGAT 58.112 50.000 0.00 0.00 0.00 2.45
584 585 2.224606 CGCCTGAATGTAGCCATGATT 58.775 47.619 0.00 0.00 0.00 2.57
585 586 2.031420 CGCCTGAATGTAGCCATGATTG 60.031 50.000 0.00 0.00 0.00 2.67
586 587 2.295349 GCCTGAATGTAGCCATGATTGG 59.705 50.000 0.00 0.00 46.66 3.16
587 588 3.559069 CCTGAATGTAGCCATGATTGGT 58.441 45.455 0.00 0.00 45.57 3.67
588 589 3.956199 CCTGAATGTAGCCATGATTGGTT 59.044 43.478 0.00 0.00 45.57 3.67
589 590 4.037208 CCTGAATGTAGCCATGATTGGTTC 59.963 45.833 0.00 0.00 45.57 3.62
590 591 4.858850 TGAATGTAGCCATGATTGGTTCT 58.141 39.130 0.00 0.00 45.57 3.01
591 592 4.883585 TGAATGTAGCCATGATTGGTTCTC 59.116 41.667 0.00 0.00 45.57 2.87
592 593 3.281727 TGTAGCCATGATTGGTTCTCC 57.718 47.619 0.00 0.00 45.57 3.71
593 594 2.213499 GTAGCCATGATTGGTTCTCCG 58.787 52.381 0.00 0.00 45.57 4.63
594 595 0.107017 AGCCATGATTGGTTCTCCGG 60.107 55.000 0.00 0.00 45.57 5.14
595 596 0.107214 GCCATGATTGGTTCTCCGGA 60.107 55.000 2.93 2.93 45.57 5.14
596 597 1.681780 GCCATGATTGGTTCTCCGGAA 60.682 52.381 5.23 0.00 45.57 4.30
597 598 2.722094 CCATGATTGGTTCTCCGGAAA 58.278 47.619 5.23 0.00 38.30 3.13
598 599 3.088532 CCATGATTGGTTCTCCGGAAAA 58.911 45.455 5.23 0.00 38.30 2.29
599 600 3.509575 CCATGATTGGTTCTCCGGAAAAA 59.490 43.478 5.23 0.00 38.30 1.94
619 620 5.479124 AAAATACCCGTGTCTGAAGTAGT 57.521 39.130 0.00 0.00 0.00 2.73
620 621 4.715527 AATACCCGTGTCTGAAGTAGTC 57.284 45.455 0.00 0.00 0.00 2.59
621 622 1.991121 ACCCGTGTCTGAAGTAGTCA 58.009 50.000 0.00 0.00 34.17 3.41
622 623 2.526432 ACCCGTGTCTGAAGTAGTCAT 58.474 47.619 0.00 0.00 35.07 3.06
623 624 2.897969 ACCCGTGTCTGAAGTAGTCATT 59.102 45.455 0.00 0.00 35.07 2.57
624 625 3.323979 ACCCGTGTCTGAAGTAGTCATTT 59.676 43.478 0.00 0.00 35.07 2.32
625 626 3.679980 CCCGTGTCTGAAGTAGTCATTTG 59.320 47.826 0.00 0.00 35.07 2.32
626 627 4.307432 CCGTGTCTGAAGTAGTCATTTGT 58.693 43.478 0.00 0.00 35.07 2.83
627 628 4.150627 CCGTGTCTGAAGTAGTCATTTGTG 59.849 45.833 0.00 0.00 35.07 3.33
628 629 4.150627 CGTGTCTGAAGTAGTCATTTGTGG 59.849 45.833 0.00 0.00 35.07 4.17
629 630 5.057149 GTGTCTGAAGTAGTCATTTGTGGT 58.943 41.667 0.00 0.00 35.07 4.16
630 631 5.050091 GTGTCTGAAGTAGTCATTTGTGGTG 60.050 44.000 0.00 0.00 35.07 4.17
631 632 5.057149 GTCTGAAGTAGTCATTTGTGGTGT 58.943 41.667 0.00 0.00 35.07 4.16
632 633 5.177696 GTCTGAAGTAGTCATTTGTGGTGTC 59.822 44.000 0.00 0.00 35.07 3.67
633 634 5.029807 TGAAGTAGTCATTTGTGGTGTCA 57.970 39.130 0.00 0.00 0.00 3.58
634 635 5.432645 TGAAGTAGTCATTTGTGGTGTCAA 58.567 37.500 0.00 0.00 0.00 3.18
635 636 5.883115 TGAAGTAGTCATTTGTGGTGTCAAA 59.117 36.000 0.00 0.00 40.74 2.69
871 933 1.831652 CGCTCCCTTGACCTGGTTCT 61.832 60.000 0.00 0.00 0.00 3.01
873 935 1.840635 GCTCCCTTGACCTGGTTCTAT 59.159 52.381 0.00 0.00 0.00 1.98
878 940 2.500098 CCTTGACCTGGTTCTATCGGAA 59.500 50.000 0.00 0.00 0.00 4.30
909 1161 0.972983 CGCCTCTTCCTCTCTTCCCA 60.973 60.000 0.00 0.00 0.00 4.37
912 1167 2.421248 GCCTCTTCCTCTCTTCCCATTG 60.421 54.545 0.00 0.00 0.00 2.82
1126 1392 4.095932 GGGTTAGGGTTTGCTATTTTCGAG 59.904 45.833 0.00 0.00 0.00 4.04
1142 1408 6.957984 TTTTCGAGTTTCAGATGAGAGATG 57.042 37.500 0.00 0.00 0.00 2.90
1237 1503 0.178995 TGATGCCACTGGAAAGCACA 60.179 50.000 0.00 0.00 39.77 4.57
1974 2256 6.476380 GCTGACAAGATGATCAAGTTAGAGAG 59.524 42.308 0.00 0.00 0.00 3.20
2444 3307 1.260297 CTTGCGTGTCATGTTGTCGAA 59.740 47.619 0.00 0.00 0.00 3.71
2506 5191 1.745232 TGTCGATGGCACCCAAATAC 58.255 50.000 0.00 0.00 36.95 1.89
2533 5539 0.973632 ATGCCTACCTTGTCGTGTCA 59.026 50.000 0.00 0.00 0.00 3.58
2627 9513 8.927059 AATATAGGGTTATGATGCCTACCTTA 57.073 34.615 0.00 0.00 0.00 2.69
2649 9535 1.666553 TGTCGTGTTGTCGATGGCC 60.667 57.895 0.00 0.00 41.78 5.36
2661 9646 2.304761 GTCGATGGCCCCCAAATATAGA 59.695 50.000 0.00 0.00 36.95 1.98
2728 11198 1.359130 AGGGTTGAGCCTATTTTGCCT 59.641 47.619 0.00 0.00 37.43 4.75
2759 11229 2.033372 TCGTCGGCACCCAAATATAGA 58.967 47.619 0.00 0.00 0.00 1.98
2787 11986 7.816995 TGATGCCAATCTTTAATTACCAACAAC 59.183 33.333 0.00 0.00 33.61 3.32
2920 12724 5.590530 ACAAAGCACTAATTCAACCAACA 57.409 34.783 0.00 0.00 0.00 3.33
2929 12733 7.464045 GCACTAATTCAACCAACAAGTTCAAAC 60.464 37.037 0.00 0.00 0.00 2.93
2964 12768 5.180117 GCAACACAACACTCATGATCTAACT 59.820 40.000 0.00 0.00 0.00 2.24
2977 12781 9.429359 CTCATGATCTAACTGTTGAAGTAGTTT 57.571 33.333 2.69 0.00 38.56 2.66
3137 12958 3.731089 CAACACAGCAAACCCATTTCAT 58.269 40.909 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.426159 CCCGGTCATGAAATTTTGACTCG 60.426 47.826 18.06 17.84 41.55 4.18
5 6 1.627879 CGCCCGGTCATGAAATTTTG 58.372 50.000 0.00 0.00 0.00 2.44
6 7 0.530288 CCGCCCGGTCATGAAATTTT 59.470 50.000 0.00 0.00 0.00 1.82
8 9 2.414785 GCCGCCCGGTCATGAAATT 61.415 57.895 8.66 0.00 37.65 1.82
9 10 2.828549 GCCGCCCGGTCATGAAAT 60.829 61.111 8.66 0.00 37.65 2.17
24 25 4.944372 CATACGACCGAGCGGGCC 62.944 72.222 14.07 0.00 41.23 5.80
25 26 4.944372 CCATACGACCGAGCGGGC 62.944 72.222 14.07 9.59 40.62 6.13
26 27 3.195591 CTCCATACGACCGAGCGGG 62.196 68.421 14.07 0.00 43.62 6.13
27 28 2.331805 CTCCATACGACCGAGCGG 59.668 66.667 7.48 7.48 42.03 5.52
28 29 2.331805 CCTCCATACGACCGAGCG 59.668 66.667 0.00 0.00 37.29 5.03
29 30 2.027751 GCCTCCATACGACCGAGC 59.972 66.667 0.00 0.00 0.00 5.03
30 31 2.331805 CGCCTCCATACGACCGAG 59.668 66.667 0.00 0.00 0.00 4.63
31 32 3.214123 CCGCCTCCATACGACCGA 61.214 66.667 0.00 0.00 0.00 4.69
32 33 4.280494 CCCGCCTCCATACGACCG 62.280 72.222 0.00 0.00 0.00 4.79
33 34 2.248086 AAACCCGCCTCCATACGACC 62.248 60.000 0.00 0.00 0.00 4.79
34 35 0.461135 TAAACCCGCCTCCATACGAC 59.539 55.000 0.00 0.00 0.00 4.34
35 36 0.748450 CTAAACCCGCCTCCATACGA 59.252 55.000 0.00 0.00 0.00 3.43
36 37 0.249741 CCTAAACCCGCCTCCATACG 60.250 60.000 0.00 0.00 0.00 3.06
37 38 0.108019 CCCTAAACCCGCCTCCATAC 59.892 60.000 0.00 0.00 0.00 2.39
38 39 1.702022 GCCCTAAACCCGCCTCCATA 61.702 60.000 0.00 0.00 0.00 2.74
39 40 3.056754 GCCCTAAACCCGCCTCCAT 62.057 63.158 0.00 0.00 0.00 3.41
40 41 3.723922 GCCCTAAACCCGCCTCCA 61.724 66.667 0.00 0.00 0.00 3.86
41 42 2.960359 GATGCCCTAAACCCGCCTCC 62.960 65.000 0.00 0.00 0.00 4.30
42 43 1.526225 GATGCCCTAAACCCGCCTC 60.526 63.158 0.00 0.00 0.00 4.70
43 44 2.595655 GATGCCCTAAACCCGCCT 59.404 61.111 0.00 0.00 0.00 5.52
44 45 2.518587 GGATGCCCTAAACCCGCC 60.519 66.667 0.00 0.00 0.00 6.13
45 46 1.823899 CAGGATGCCCTAAACCCGC 60.824 63.158 0.00 0.00 42.02 6.13
46 47 0.748005 CACAGGATGCCCTAAACCCG 60.748 60.000 0.00 0.00 42.02 5.28
47 48 0.331616 ACACAGGATGCCCTAAACCC 59.668 55.000 0.00 0.00 42.02 4.11
48 49 2.504175 TCTACACAGGATGCCCTAAACC 59.496 50.000 0.00 0.00 42.02 3.27
49 50 3.906720 TCTACACAGGATGCCCTAAAC 57.093 47.619 0.00 0.00 42.02 2.01
50 51 5.216622 AGTATCTACACAGGATGCCCTAAA 58.783 41.667 0.00 0.00 42.02 1.85
51 52 4.816126 AGTATCTACACAGGATGCCCTAA 58.184 43.478 0.00 0.00 42.02 2.69
52 53 4.408276 GAGTATCTACACAGGATGCCCTA 58.592 47.826 0.00 0.00 42.02 3.53
53 54 3.235200 GAGTATCTACACAGGATGCCCT 58.765 50.000 0.00 0.00 45.74 5.19
54 55 3.669251 GAGTATCTACACAGGATGCCC 57.331 52.381 0.00 0.00 42.53 5.36
82 83 3.005155 GCGACCGTGGGAGTATTATTACT 59.995 47.826 0.00 0.00 41.45 2.24
83 84 3.311966 GCGACCGTGGGAGTATTATTAC 58.688 50.000 0.00 0.00 0.00 1.89
84 85 2.297033 GGCGACCGTGGGAGTATTATTA 59.703 50.000 0.00 0.00 0.00 0.98
85 86 1.069668 GGCGACCGTGGGAGTATTATT 59.930 52.381 0.00 0.00 0.00 1.40
86 87 0.677842 GGCGACCGTGGGAGTATTAT 59.322 55.000 0.00 0.00 0.00 1.28
87 88 1.394266 GGGCGACCGTGGGAGTATTA 61.394 60.000 0.00 0.00 43.64 0.98
88 89 2.728435 GGGCGACCGTGGGAGTATT 61.728 63.158 0.00 0.00 43.64 1.89
89 90 3.152400 GGGCGACCGTGGGAGTAT 61.152 66.667 0.00 0.00 43.64 2.12
107 108 4.465446 AGCGCCCCTCTGCCTAGA 62.465 66.667 2.29 0.00 0.00 2.43
108 109 4.232878 CAGCGCCCCTCTGCCTAG 62.233 72.222 2.29 0.00 0.00 3.02
122 123 1.287730 GATCGACGATGATGCCCAGC 61.288 60.000 16.49 0.00 0.00 4.85
123 124 0.032540 TGATCGACGATGATGCCCAG 59.967 55.000 16.49 0.00 0.00 4.45
124 125 0.032540 CTGATCGACGATGATGCCCA 59.967 55.000 16.49 4.80 0.00 5.36
125 126 1.287730 GCTGATCGACGATGATGCCC 61.288 60.000 16.49 0.00 0.00 5.36
126 127 0.319383 AGCTGATCGACGATGATGCC 60.319 55.000 16.49 0.44 0.00 4.40
127 128 0.782981 CAGCTGATCGACGATGATGC 59.217 55.000 16.49 15.27 0.00 3.91
128 129 2.131281 ACAGCTGATCGACGATGATG 57.869 50.000 23.35 13.05 0.00 3.07
129 130 2.030717 GGTACAGCTGATCGACGATGAT 60.031 50.000 23.35 0.00 0.00 2.45
130 131 1.333931 GGTACAGCTGATCGACGATGA 59.666 52.381 23.35 5.85 0.00 2.92
131 132 1.335182 AGGTACAGCTGATCGACGATG 59.665 52.381 23.35 4.32 0.00 3.84
132 133 1.335182 CAGGTACAGCTGATCGACGAT 59.665 52.381 23.35 10.78 0.00 3.73
133 134 0.733150 CAGGTACAGCTGATCGACGA 59.267 55.000 23.35 0.00 0.00 4.20
134 135 0.867753 GCAGGTACAGCTGATCGACG 60.868 60.000 23.35 5.09 38.05 5.12
135 136 0.528684 GGCAGGTACAGCTGATCGAC 60.529 60.000 23.35 12.05 41.93 4.20
136 137 1.676678 GGGCAGGTACAGCTGATCGA 61.677 60.000 23.35 0.00 41.93 3.59
137 138 1.227380 GGGCAGGTACAGCTGATCG 60.227 63.158 23.35 4.88 41.93 3.69
138 139 0.105778 GAGGGCAGGTACAGCTGATC 59.894 60.000 23.35 12.32 41.93 2.92
139 140 1.680522 CGAGGGCAGGTACAGCTGAT 61.681 60.000 23.35 7.41 41.93 2.90
140 141 2.351244 CGAGGGCAGGTACAGCTGA 61.351 63.158 23.35 0.48 41.93 4.26
141 142 2.185350 CGAGGGCAGGTACAGCTG 59.815 66.667 13.48 13.48 41.93 4.24
142 143 2.283966 ACGAGGGCAGGTACAGCT 60.284 61.111 9.07 0.00 41.93 4.24
143 144 2.184579 GACGAGGGCAGGTACAGC 59.815 66.667 0.00 0.00 41.34 4.40
144 145 2.044555 TCGACGAGGGCAGGTACAG 61.045 63.158 0.00 0.00 0.00 2.74
145 146 2.034532 TCGACGAGGGCAGGTACA 59.965 61.111 0.00 0.00 0.00 2.90
146 147 2.488820 GTCGACGAGGGCAGGTAC 59.511 66.667 0.00 0.00 0.00 3.34
147 148 2.753043 GGTCGACGAGGGCAGGTA 60.753 66.667 9.92 0.00 0.00 3.08
158 159 4.664677 ACAGGTGCAGCGGTCGAC 62.665 66.667 16.10 7.13 0.00 4.20
159 160 4.357947 GACAGGTGCAGCGGTCGA 62.358 66.667 28.45 0.00 0.00 4.20
161 162 4.357947 TCGACAGGTGCAGCGGTC 62.358 66.667 31.07 31.07 0.00 4.79
162 163 4.664677 GTCGACAGGTGCAGCGGT 62.665 66.667 21.56 21.56 0.00 5.68
163 164 4.662961 TGTCGACAGGTGCAGCGG 62.663 66.667 15.76 14.63 0.00 5.52
164 165 3.406361 GTGTCGACAGGTGCAGCG 61.406 66.667 20.73 8.17 0.00 5.18
165 166 3.044305 GGTGTCGACAGGTGCAGC 61.044 66.667 20.73 8.11 0.00 5.25
166 167 1.665916 CAGGTGTCGACAGGTGCAG 60.666 63.158 20.73 2.22 0.00 4.41
167 168 1.471829 ATCAGGTGTCGACAGGTGCA 61.472 55.000 20.73 9.54 0.00 4.57
168 169 0.737715 GATCAGGTGTCGACAGGTGC 60.738 60.000 20.73 6.94 0.00 5.01
169 170 0.603065 TGATCAGGTGTCGACAGGTG 59.397 55.000 20.73 18.69 0.00 4.00
170 171 1.205655 CATGATCAGGTGTCGACAGGT 59.794 52.381 20.73 6.08 0.00 4.00
171 172 1.931906 CATGATCAGGTGTCGACAGG 58.068 55.000 20.73 11.88 0.00 4.00
172 173 1.284657 GCATGATCAGGTGTCGACAG 58.715 55.000 20.73 7.81 0.00 3.51
173 174 0.108186 GGCATGATCAGGTGTCGACA 60.108 55.000 15.76 15.76 0.00 4.35
174 175 1.148157 CGGCATGATCAGGTGTCGAC 61.148 60.000 16.35 9.11 45.54 4.20
175 176 1.141665 CGGCATGATCAGGTGTCGA 59.858 57.895 16.35 0.00 45.54 4.20
176 177 1.141665 TCGGCATGATCAGGTGTCG 59.858 57.895 15.43 15.43 44.18 4.35
177 178 1.148157 CGTCGGCATGATCAGGTGTC 61.148 60.000 9.42 0.00 0.00 3.67
178 179 1.153568 CGTCGGCATGATCAGGTGT 60.154 57.895 9.42 0.00 0.00 4.16
179 180 0.740868 AACGTCGGCATGATCAGGTG 60.741 55.000 9.42 0.19 0.00 4.00
180 181 0.740868 CAACGTCGGCATGATCAGGT 60.741 55.000 9.42 0.00 0.00 4.00
181 182 0.460109 TCAACGTCGGCATGATCAGG 60.460 55.000 2.22 2.22 0.00 3.86
182 183 0.647410 GTCAACGTCGGCATGATCAG 59.353 55.000 0.09 0.00 0.00 2.90
183 184 0.739462 GGTCAACGTCGGCATGATCA 60.739 55.000 0.00 0.00 0.00 2.92
184 185 1.752501 CGGTCAACGTCGGCATGATC 61.753 60.000 0.00 0.00 37.93 2.92
185 186 1.809619 CGGTCAACGTCGGCATGAT 60.810 57.895 0.00 0.00 37.93 2.45
186 187 2.431771 CGGTCAACGTCGGCATGA 60.432 61.111 0.00 0.00 37.93 3.07
187 188 4.147322 GCGGTCAACGTCGGCATG 62.147 66.667 0.00 0.00 46.52 4.06
202 203 2.709475 GCTTCTAATGCCGTGGCG 59.291 61.111 6.37 0.00 45.51 5.69
203 204 2.709475 CGCTTCTAATGCCGTGGC 59.291 61.111 3.30 3.30 42.35 5.01
204 205 2.709475 GCGCTTCTAATGCCGTGG 59.291 61.111 0.00 0.00 0.00 4.94
205 206 2.321060 CGCGCTTCTAATGCCGTG 59.679 61.111 5.56 0.00 0.00 4.94
206 207 2.890474 CCGCGCTTCTAATGCCGT 60.890 61.111 5.56 0.00 0.00 5.68
207 208 4.299316 GCCGCGCTTCTAATGCCG 62.299 66.667 5.56 0.00 0.00 5.69
208 209 3.953887 GGCCGCGCTTCTAATGCC 61.954 66.667 5.56 0.76 0.00 4.40
209 210 3.202001 TGGCCGCGCTTCTAATGC 61.202 61.111 5.56 0.00 0.00 3.56
210 211 2.040213 CTGTGGCCGCGCTTCTAATG 62.040 60.000 12.58 0.00 0.00 1.90
211 212 1.815421 CTGTGGCCGCGCTTCTAAT 60.815 57.895 12.58 0.00 0.00 1.73
212 213 2.434185 CTGTGGCCGCGCTTCTAA 60.434 61.111 12.58 0.00 0.00 2.10
213 214 3.691342 ACTGTGGCCGCGCTTCTA 61.691 61.111 12.58 0.00 0.00 2.10
220 221 3.965539 ATCTGAGCACTGTGGCCGC 62.966 63.158 10.11 10.11 0.00 6.53
221 222 0.957395 AAATCTGAGCACTGTGGCCG 60.957 55.000 10.21 0.00 0.00 6.13
222 223 2.113860 TAAATCTGAGCACTGTGGCC 57.886 50.000 10.21 0.00 0.00 5.36
223 224 3.242543 CGATTAAATCTGAGCACTGTGGC 60.243 47.826 10.21 2.10 0.00 5.01
224 225 3.935203 ACGATTAAATCTGAGCACTGTGG 59.065 43.478 10.21 0.00 0.00 4.17
225 226 4.867047 AGACGATTAAATCTGAGCACTGTG 59.133 41.667 2.76 2.76 0.00 3.66
226 227 4.867047 CAGACGATTAAATCTGAGCACTGT 59.133 41.667 8.39 0.00 44.32 3.55
227 228 4.269603 CCAGACGATTAAATCTGAGCACTG 59.730 45.833 13.56 0.00 44.32 3.66
228 229 4.081420 ACCAGACGATTAAATCTGAGCACT 60.081 41.667 13.56 0.00 44.32 4.40
246 247 3.545574 TGGACGCAGCACACCAGA 61.546 61.111 0.00 0.00 0.00 3.86
248 249 4.168291 TGTGGACGCAGCACACCA 62.168 61.111 8.82 4.21 36.77 4.17
263 264 2.202824 CGTGGTGTGTCCGTGTGT 60.203 61.111 0.00 0.00 39.52 3.72
264 265 1.519676 TTCGTGGTGTGTCCGTGTG 60.520 57.895 0.00 0.00 39.52 3.82
265 266 1.519898 GTTCGTGGTGTGTCCGTGT 60.520 57.895 0.00 0.00 39.52 4.49
266 267 1.519676 TGTTCGTGGTGTGTCCGTG 60.520 57.895 0.00 0.00 39.52 4.94
267 268 1.519898 GTGTTCGTGGTGTGTCCGT 60.520 57.895 0.00 0.00 39.52 4.69
268 269 2.582265 CGTGTTCGTGGTGTGTCCG 61.582 63.158 0.00 0.00 39.52 4.79
269 270 2.877974 GCGTGTTCGTGGTGTGTCC 61.878 63.158 0.00 0.00 39.49 4.02
270 271 2.624264 GCGTGTTCGTGGTGTGTC 59.376 61.111 0.00 0.00 39.49 3.67
311 312 3.498481 CCAGACTTTTCCATGGGAGACAA 60.498 47.826 13.02 0.00 31.21 3.18
312 313 2.040278 CCAGACTTTTCCATGGGAGACA 59.960 50.000 13.02 0.00 31.21 3.41
338 339 3.370953 GCTTTCCATGCCTCTTCTTCCTA 60.371 47.826 0.00 0.00 0.00 2.94
346 347 2.444421 CTTTGAGCTTTCCATGCCTCT 58.556 47.619 0.00 0.00 0.00 3.69
370 371 5.148651 ACGTCTTCAATAACTGGTTAGCT 57.851 39.130 0.00 0.00 0.00 3.32
377 378 5.120674 TCAGCATCAACGTCTTCAATAACTG 59.879 40.000 0.00 0.00 0.00 3.16
383 384 2.160219 GCATCAGCATCAACGTCTTCAA 59.840 45.455 0.00 0.00 41.58 2.69
384 385 1.733912 GCATCAGCATCAACGTCTTCA 59.266 47.619 0.00 0.00 41.58 3.02
386 387 1.736126 CAGCATCAGCATCAACGTCTT 59.264 47.619 0.00 0.00 45.49 3.01
387 388 1.066645 TCAGCATCAGCATCAACGTCT 60.067 47.619 0.00 0.00 45.49 4.18
388 389 1.362768 TCAGCATCAGCATCAACGTC 58.637 50.000 0.00 0.00 45.49 4.34
389 390 1.669265 CATCAGCATCAGCATCAACGT 59.331 47.619 0.00 0.00 45.49 3.99
390 391 1.597199 GCATCAGCATCAGCATCAACG 60.597 52.381 0.00 0.00 45.49 4.10
391 392 1.676529 AGCATCAGCATCAGCATCAAC 59.323 47.619 0.00 0.00 45.49 3.18
392 393 1.676006 CAGCATCAGCATCAGCATCAA 59.324 47.619 0.00 0.00 45.49 2.57
393 394 1.308998 CAGCATCAGCATCAGCATCA 58.691 50.000 0.00 0.00 45.49 3.07
394 395 0.039978 GCAGCATCAGCATCAGCATC 60.040 55.000 0.00 0.00 45.49 3.91
395 396 0.751643 TGCAGCATCAGCATCAGCAT 60.752 50.000 0.00 0.00 45.49 3.79
396 397 1.376609 CTGCAGCATCAGCATCAGCA 61.377 55.000 0.00 0.00 45.49 4.41
424 425 1.425428 CAAAATGAGAGGACGCGCC 59.575 57.895 5.73 9.03 0.00 6.53
425 426 1.226128 GCAAAATGAGAGGACGCGC 60.226 57.895 5.73 0.00 0.00 6.86
426 427 0.798776 AAGCAAAATGAGAGGACGCG 59.201 50.000 3.53 3.53 0.00 6.01
427 428 2.030805 ACAAAGCAAAATGAGAGGACGC 60.031 45.455 0.00 0.00 0.00 5.19
428 429 3.904136 ACAAAGCAAAATGAGAGGACG 57.096 42.857 0.00 0.00 0.00 4.79
429 430 6.089954 GCAATAACAAAGCAAAATGAGAGGAC 59.910 38.462 0.00 0.00 0.00 3.85
430 431 6.158598 GCAATAACAAAGCAAAATGAGAGGA 58.841 36.000 0.00 0.00 0.00 3.71
431 432 5.927689 TGCAATAACAAAGCAAAATGAGAGG 59.072 36.000 0.00 0.00 34.97 3.69
432 433 7.412563 CCATGCAATAACAAAGCAAAATGAGAG 60.413 37.037 0.00 0.00 42.15 3.20
433 434 6.369340 CCATGCAATAACAAAGCAAAATGAGA 59.631 34.615 0.00 0.00 42.15 3.27
434 435 6.369340 TCCATGCAATAACAAAGCAAAATGAG 59.631 34.615 0.00 0.00 42.15 2.90
435 436 6.228995 TCCATGCAATAACAAAGCAAAATGA 58.771 32.000 0.00 0.00 42.15 2.57
436 437 6.369340 TCTCCATGCAATAACAAAGCAAAATG 59.631 34.615 0.00 0.00 42.15 2.32
437 438 6.465948 TCTCCATGCAATAACAAAGCAAAAT 58.534 32.000 0.00 0.00 42.15 1.82
438 439 5.851720 TCTCCATGCAATAACAAAGCAAAA 58.148 33.333 0.00 0.00 42.15 2.44
439 440 5.465532 TCTCCATGCAATAACAAAGCAAA 57.534 34.783 0.00 0.00 42.15 3.68
440 441 5.465532 TTCTCCATGCAATAACAAAGCAA 57.534 34.783 0.00 0.00 42.15 3.91
441 442 5.465532 TTTCTCCATGCAATAACAAAGCA 57.534 34.783 0.00 0.00 43.14 3.91
442 443 4.328169 GCTTTCTCCATGCAATAACAAAGC 59.672 41.667 15.67 15.67 38.16 3.51
443 444 5.717119 AGCTTTCTCCATGCAATAACAAAG 58.283 37.500 0.00 0.00 0.00 2.77
444 445 5.713025 GAGCTTTCTCCATGCAATAACAAA 58.287 37.500 0.00 0.00 33.19 2.83
445 446 5.314923 GAGCTTTCTCCATGCAATAACAA 57.685 39.130 0.00 0.00 33.19 2.83
446 447 4.970662 GAGCTTTCTCCATGCAATAACA 57.029 40.909 0.00 0.00 33.19 2.41
458 459 0.611714 TGGTTACCCGGAGCTTTCTC 59.388 55.000 0.73 0.00 38.62 2.87
459 460 0.323957 GTGGTTACCCGGAGCTTTCT 59.676 55.000 0.73 0.00 0.00 2.52
460 461 0.675837 GGTGGTTACCCGGAGCTTTC 60.676 60.000 0.73 0.00 41.36 2.62
461 462 1.377612 GGTGGTTACCCGGAGCTTT 59.622 57.895 0.73 0.00 41.36 3.51
462 463 2.951101 CGGTGGTTACCCGGAGCTT 61.951 63.158 0.73 0.00 44.53 3.74
463 464 3.387947 CGGTGGTTACCCGGAGCT 61.388 66.667 0.73 0.00 44.53 4.09
465 466 4.462280 GGCGGTGGTTACCCGGAG 62.462 72.222 0.73 0.00 45.57 4.63
486 487 0.745845 CCATGGAACGCAGCTTAGCT 60.746 55.000 5.56 0.00 40.77 3.32
487 488 1.723870 CCATGGAACGCAGCTTAGC 59.276 57.895 5.56 0.00 0.00 3.09
488 489 1.718757 GGCCATGGAACGCAGCTTAG 61.719 60.000 18.40 0.00 0.00 2.18
489 490 1.748879 GGCCATGGAACGCAGCTTA 60.749 57.895 18.40 0.00 0.00 3.09
490 491 3.064324 GGCCATGGAACGCAGCTT 61.064 61.111 18.40 0.00 0.00 3.74
491 492 4.349503 TGGCCATGGAACGCAGCT 62.350 61.111 18.40 0.00 0.00 4.24
492 493 4.120331 GTGGCCATGGAACGCAGC 62.120 66.667 18.40 0.00 0.00 5.25
493 494 2.672651 TGTGGCCATGGAACGCAG 60.673 61.111 18.40 0.00 0.00 5.18
494 495 2.672651 CTGTGGCCATGGAACGCA 60.673 61.111 18.40 18.38 0.00 5.24
495 496 4.120331 GCTGTGGCCATGGAACGC 62.120 66.667 18.40 14.52 0.00 4.84
496 497 1.973281 AAGCTGTGGCCATGGAACG 60.973 57.895 18.40 10.12 39.73 3.95
497 498 1.181098 ACAAGCTGTGGCCATGGAAC 61.181 55.000 18.40 13.54 39.73 3.62
498 499 0.895100 GACAAGCTGTGGCCATGGAA 60.895 55.000 18.40 0.00 39.73 3.53
499 500 1.303561 GACAAGCTGTGGCCATGGA 60.304 57.895 18.40 0.00 39.73 3.41
500 501 0.896940 AAGACAAGCTGTGGCCATGG 60.897 55.000 9.72 7.63 34.75 3.66
501 502 0.963962 AAAGACAAGCTGTGGCCATG 59.036 50.000 9.72 4.94 34.75 3.66
502 503 1.202976 AGAAAGACAAGCTGTGGCCAT 60.203 47.619 9.72 0.00 34.75 4.40
503 504 0.183492 AGAAAGACAAGCTGTGGCCA 59.817 50.000 0.00 0.00 34.75 5.36
504 505 0.877743 GAGAAAGACAAGCTGTGGCC 59.122 55.000 0.00 0.00 34.75 5.36
505 506 1.534595 CTGAGAAAGACAAGCTGTGGC 59.465 52.381 0.00 0.00 39.06 5.01
506 507 2.149578 CCTGAGAAAGACAAGCTGTGG 58.850 52.381 0.00 0.00 0.00 4.17
507 508 1.534595 GCCTGAGAAAGACAAGCTGTG 59.465 52.381 0.00 0.00 0.00 3.66
508 509 1.419387 AGCCTGAGAAAGACAAGCTGT 59.581 47.619 0.00 0.00 34.38 4.40
509 510 2.181954 AGCCTGAGAAAGACAAGCTG 57.818 50.000 0.00 0.00 34.38 4.24
510 511 2.502295 CAAGCCTGAGAAAGACAAGCT 58.498 47.619 0.00 0.00 36.74 3.74
511 512 1.068679 GCAAGCCTGAGAAAGACAAGC 60.069 52.381 0.00 0.00 0.00 4.01
512 513 2.225963 CAGCAAGCCTGAGAAAGACAAG 59.774 50.000 0.00 0.00 44.64 3.16
513 514 2.224606 CAGCAAGCCTGAGAAAGACAA 58.775 47.619 0.00 0.00 44.64 3.18
514 515 1.141657 ACAGCAAGCCTGAGAAAGACA 59.858 47.619 0.00 0.00 44.64 3.41
515 516 1.889545 ACAGCAAGCCTGAGAAAGAC 58.110 50.000 0.00 0.00 44.64 3.01
516 517 2.224606 CAACAGCAAGCCTGAGAAAGA 58.775 47.619 0.00 0.00 44.64 2.52
517 518 1.268899 CCAACAGCAAGCCTGAGAAAG 59.731 52.381 0.00 0.00 44.64 2.62
518 519 1.321474 CCAACAGCAAGCCTGAGAAA 58.679 50.000 0.00 0.00 44.64 2.52
519 520 1.174712 GCCAACAGCAAGCCTGAGAA 61.175 55.000 0.00 0.00 44.64 2.87
520 521 1.601759 GCCAACAGCAAGCCTGAGA 60.602 57.895 0.00 0.00 44.64 3.27
521 522 2.960170 GCCAACAGCAAGCCTGAG 59.040 61.111 0.00 0.00 44.64 3.35
530 531 1.727511 TTGTCTGCACAGCCAACAGC 61.728 55.000 0.00 0.00 44.25 4.40
531 532 0.029834 GTTGTCTGCACAGCCAACAG 59.970 55.000 17.12 0.00 32.71 3.16
532 533 2.105984 GTTGTCTGCACAGCCAACA 58.894 52.632 17.12 3.55 32.71 3.33
537 538 2.263741 CCCAGGTTGTCTGCACAGC 61.264 63.158 0.00 0.00 42.05 4.40
538 539 0.604780 CTCCCAGGTTGTCTGCACAG 60.605 60.000 0.00 0.00 42.05 3.66
539 540 1.053835 TCTCCCAGGTTGTCTGCACA 61.054 55.000 0.00 0.00 42.05 4.57
540 541 0.321122 CTCTCCCAGGTTGTCTGCAC 60.321 60.000 0.00 0.00 42.05 4.57
541 542 1.483595 CCTCTCCCAGGTTGTCTGCA 61.484 60.000 0.00 0.00 42.05 4.41
542 543 1.194781 TCCTCTCCCAGGTTGTCTGC 61.195 60.000 0.00 0.00 43.95 4.26
543 544 1.277557 CTTCCTCTCCCAGGTTGTCTG 59.722 57.143 0.00 0.00 43.95 3.51
544 545 1.650528 CTTCCTCTCCCAGGTTGTCT 58.349 55.000 0.00 0.00 43.95 3.41
545 546 0.035915 GCTTCCTCTCCCAGGTTGTC 60.036 60.000 0.00 0.00 43.95 3.18
546 547 1.831652 CGCTTCCTCTCCCAGGTTGT 61.832 60.000 0.00 0.00 43.95 3.32
547 548 1.078848 CGCTTCCTCTCCCAGGTTG 60.079 63.158 0.00 0.00 43.95 3.77
548 549 2.960688 GCGCTTCCTCTCCCAGGTT 61.961 63.158 0.00 0.00 43.95 3.50
549 550 3.394836 GCGCTTCCTCTCCCAGGT 61.395 66.667 0.00 0.00 43.95 4.00
550 551 4.168291 GGCGCTTCCTCTCCCAGG 62.168 72.222 7.64 0.00 45.15 4.45
551 552 3.080121 AGGCGCTTCCTCTCCCAG 61.080 66.667 7.64 0.00 43.20 4.45
552 553 3.393970 CAGGCGCTTCCTCTCCCA 61.394 66.667 7.64 0.00 45.52 4.37
553 554 1.977293 ATTCAGGCGCTTCCTCTCCC 61.977 60.000 7.64 0.00 45.52 4.30
554 555 0.813210 CATTCAGGCGCTTCCTCTCC 60.813 60.000 7.64 0.00 45.52 3.71
555 556 0.107945 ACATTCAGGCGCTTCCTCTC 60.108 55.000 7.64 0.00 45.52 3.20
556 557 1.137872 CTACATTCAGGCGCTTCCTCT 59.862 52.381 7.64 0.00 45.52 3.69
557 558 1.576356 CTACATTCAGGCGCTTCCTC 58.424 55.000 7.64 0.00 45.52 3.71
559 560 1.440145 GGCTACATTCAGGCGCTTCC 61.440 60.000 7.64 0.00 0.00 3.46
560 561 0.744414 TGGCTACATTCAGGCGCTTC 60.744 55.000 7.64 0.00 43.78 3.86
561 562 0.107017 ATGGCTACATTCAGGCGCTT 60.107 50.000 7.64 0.00 43.78 4.68
562 563 0.816825 CATGGCTACATTCAGGCGCT 60.817 55.000 7.64 0.00 43.78 5.92
563 564 0.815213 TCATGGCTACATTCAGGCGC 60.815 55.000 0.00 0.00 43.78 6.53
564 565 1.888215 ATCATGGCTACATTCAGGCG 58.112 50.000 0.00 0.00 43.78 5.52
565 566 2.295349 CCAATCATGGCTACATTCAGGC 59.705 50.000 0.00 0.00 40.58 4.85
578 579 4.782019 TTTTTCCGGAGAACCAATCATG 57.218 40.909 6.97 0.00 35.59 3.07
596 597 5.861727 ACTACTTCAGACACGGGTATTTTT 58.138 37.500 0.00 0.00 0.00 1.94
597 598 5.011329 TGACTACTTCAGACACGGGTATTTT 59.989 40.000 0.00 0.00 0.00 1.82
598 599 4.525487 TGACTACTTCAGACACGGGTATTT 59.475 41.667 0.00 0.00 0.00 1.40
599 600 4.084287 TGACTACTTCAGACACGGGTATT 58.916 43.478 0.00 0.00 0.00 1.89
600 601 3.693807 TGACTACTTCAGACACGGGTAT 58.306 45.455 0.00 0.00 0.00 2.73
601 602 3.144657 TGACTACTTCAGACACGGGTA 57.855 47.619 0.00 0.00 0.00 3.69
602 603 1.991121 TGACTACTTCAGACACGGGT 58.009 50.000 0.00 0.00 0.00 5.28
603 604 3.594603 AATGACTACTTCAGACACGGG 57.405 47.619 0.00 0.00 37.77 5.28
604 605 4.150627 CACAAATGACTACTTCAGACACGG 59.849 45.833 0.00 0.00 37.77 4.94
605 606 4.150627 CCACAAATGACTACTTCAGACACG 59.849 45.833 0.00 0.00 37.77 4.49
606 607 5.050091 CACCACAAATGACTACTTCAGACAC 60.050 44.000 0.00 0.00 37.77 3.67
607 608 5.056480 CACCACAAATGACTACTTCAGACA 58.944 41.667 0.00 0.00 37.77 3.41
608 609 5.057149 ACACCACAAATGACTACTTCAGAC 58.943 41.667 0.00 0.00 37.77 3.51
609 610 5.163353 TGACACCACAAATGACTACTTCAGA 60.163 40.000 0.00 0.00 37.77 3.27
610 611 5.056480 TGACACCACAAATGACTACTTCAG 58.944 41.667 0.00 0.00 37.77 3.02
611 612 5.029807 TGACACCACAAATGACTACTTCA 57.970 39.130 0.00 0.00 39.11 3.02
612 613 6.260050 TCTTTGACACCACAAATGACTACTTC 59.740 38.462 0.00 0.00 38.73 3.01
613 614 6.119536 TCTTTGACACCACAAATGACTACTT 58.880 36.000 0.00 0.00 38.73 2.24
614 615 5.680619 TCTTTGACACCACAAATGACTACT 58.319 37.500 0.00 0.00 38.73 2.57
615 616 5.527582 ACTCTTTGACACCACAAATGACTAC 59.472 40.000 0.00 0.00 38.73 2.73
616 617 5.680619 ACTCTTTGACACCACAAATGACTA 58.319 37.500 0.00 0.00 38.73 2.59
617 618 4.526970 ACTCTTTGACACCACAAATGACT 58.473 39.130 0.00 0.00 38.73 3.41
618 619 4.900635 ACTCTTTGACACCACAAATGAC 57.099 40.909 0.00 0.00 38.73 3.06
619 620 7.581213 ATTTACTCTTTGACACCACAAATGA 57.419 32.000 0.00 0.00 38.73 2.57
620 621 7.306749 GCAATTTACTCTTTGACACCACAAATG 60.307 37.037 0.00 0.00 38.73 2.32
621 622 6.701400 GCAATTTACTCTTTGACACCACAAAT 59.299 34.615 0.00 0.00 38.73 2.32
622 623 6.039616 GCAATTTACTCTTTGACACCACAAA 58.960 36.000 0.00 0.00 37.98 2.83
623 624 5.126222 TGCAATTTACTCTTTGACACCACAA 59.874 36.000 0.00 0.00 0.00 3.33
624 625 4.642437 TGCAATTTACTCTTTGACACCACA 59.358 37.500 0.00 0.00 0.00 4.17
625 626 5.181690 TGCAATTTACTCTTTGACACCAC 57.818 39.130 0.00 0.00 0.00 4.16
626 627 5.843673 TTGCAATTTACTCTTTGACACCA 57.156 34.783 0.00 0.00 0.00 4.17
627 628 7.532682 TTTTTGCAATTTACTCTTTGACACC 57.467 32.000 0.00 0.00 0.00 4.16
871 933 4.806571 GCACGAGCTGTTCCGATA 57.193 55.556 0.00 0.00 37.91 2.92
909 1161 0.045469 AGAGAGGAAGAGGGGGCAAT 59.955 55.000 0.00 0.00 0.00 3.56
912 1167 1.341913 GGAAGAGAGGAAGAGGGGGC 61.342 65.000 0.00 0.00 0.00 5.80
996 1260 3.358932 ATTCCACGACCCCATGGCC 62.359 63.158 6.09 0.00 35.81 5.36
1004 1268 3.186047 CGCCGTCATTCCACGACC 61.186 66.667 0.00 0.00 42.69 4.79
1126 1392 5.125097 ACAAATGCCATCTCTCATCTGAAAC 59.875 40.000 0.00 0.00 0.00 2.78
1142 1408 4.455533 GGGGAGAAAATCAAAACAAATGCC 59.544 41.667 0.00 0.00 0.00 4.40
1974 2256 7.763985 CCTCCTTCTTTAGATCAAAGTTCTCTC 59.236 40.741 13.69 0.00 43.58 3.20
2506 5191 1.004745 ACAAGGTAGGCATCAACCCTG 59.995 52.381 0.00 0.00 36.34 4.45
2533 5539 0.251121 TTGGGTGCCATCGACAACAT 60.251 50.000 0.00 0.00 31.53 2.71
2577 5936 3.198068 GTGCCATCGACAATATGACACT 58.802 45.455 0.00 0.00 35.56 3.55
2613 5972 3.305403 CGACACGATAAGGTAGGCATCAT 60.305 47.826 0.00 0.00 0.00 2.45
2627 9513 1.336877 CATCGACAACACGACACGAT 58.663 50.000 0.00 0.00 44.84 3.73
2649 9535 4.713792 AGGCTCAACTCTATATTTGGGG 57.286 45.455 0.00 0.00 0.00 4.96
2661 9646 2.639839 ACATGACAAGGTAGGCTCAACT 59.360 45.455 0.00 0.00 0.00 3.16
2728 11198 0.530870 TGCCGACGACAACATGACAA 60.531 50.000 0.00 0.00 0.00 3.18
2759 11229 8.538701 TGTTGGTAATTAAAGATTGGCATCAAT 58.461 29.630 0.00 0.00 45.45 2.57
2787 11986 4.487948 CCAGCAACCATCATTTGTGTAAG 58.512 43.478 0.00 0.00 0.00 2.34
2920 12724 6.072175 TGTTGCACTTAGAACTGTTTGAACTT 60.072 34.615 0.00 0.00 0.00 2.66
2929 12733 4.094887 AGTGTTGTGTTGCACTTAGAACTG 59.905 41.667 0.00 0.00 42.61 3.16
2964 12768 5.590663 TGTGGCACATTAAACTACTTCAACA 59.409 36.000 17.96 0.00 44.52 3.33
2977 12781 2.751143 ATGTGTGGTGTGTGGCACATTA 60.751 45.455 24.95 13.38 46.49 1.90
2991 12809 5.156355 GTTTTGCTGTTAGATCATGTGTGG 58.844 41.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.