Multiple sequence alignment - TraesCS6D01G098900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G098900 chr6D 100.000 2456 0 0 1 2456 62216305 62213850 0.000000e+00 4536.0
1 TraesCS6D01G098900 chr6D 93.196 485 21 6 314 788 460078147 460078629 0.000000e+00 702.0
2 TraesCS6D01G098900 chr6D 98.305 295 3 2 1 293 467277049 467276755 1.300000e-142 516.0
3 TraesCS6D01G098900 chr6D 85.227 176 26 0 964 1139 451029666 451029841 5.400000e-42 182.0
4 TraesCS6D01G098900 chr6A 93.825 1425 70 9 856 2277 79357509 79356100 0.000000e+00 2128.0
5 TraesCS6D01G098900 chr6A 92.037 854 45 12 788 1636 79311499 79310664 0.000000e+00 1179.0
6 TraesCS6D01G098900 chr6A 85.635 543 43 16 1738 2271 79310665 79310149 2.780000e-149 538.0
7 TraesCS6D01G098900 chr6A 86.395 147 16 2 909 1053 84704466 84704610 9.090000e-35 158.0
8 TraesCS6D01G098900 chr2D 96.660 509 14 2 286 793 375280571 375280065 0.000000e+00 843.0
9 TraesCS6D01G098900 chr3D 96.230 504 13 4 286 788 568000651 568001149 0.000000e+00 821.0
10 TraesCS6D01G098900 chr3D 98.305 295 3 2 1 293 432512668 432512374 1.300000e-142 516.0
11 TraesCS6D01G098900 chr3D 98.958 288 3 0 1 288 575934433 575934720 1.300000e-142 516.0
12 TraesCS6D01G098900 chr3D 93.396 106 7 0 2303 2408 161924556 161924451 9.090000e-35 158.0
13 TraesCS6D01G098900 chr6B 89.241 474 34 9 1177 1635 135936308 135935837 5.890000e-161 577.0
14 TraesCS6D01G098900 chr6B 92.875 393 18 6 788 1180 135936770 135936388 1.650000e-156 562.0
15 TraesCS6D01G098900 chr6B 83.673 147 22 2 964 1110 684779984 684780128 1.180000e-28 137.0
16 TraesCS6D01G098900 chr6B 87.302 126 6 3 909 1026 142102873 142102996 4.260000e-28 135.0
17 TraesCS6D01G098900 chr7D 99.653 288 1 0 1 288 109472105 109472392 6.020000e-146 527.0
18 TraesCS6D01G098900 chr7D 99.653 288 1 0 1 288 140812066 140812353 6.020000e-146 527.0
19 TraesCS6D01G098900 chr7D 98.644 295 2 2 1 293 602730066 602729772 2.800000e-144 521.0
20 TraesCS6D01G098900 chr5D 98.644 295 2 2 1 293 486283799 486283505 2.800000e-144 521.0
21 TraesCS6D01G098900 chr5D 94.805 154 8 0 2303 2456 482554991 482554838 8.780000e-60 241.0
22 TraesCS6D01G098900 chr5D 92.949 156 11 0 2301 2456 138479760 138479605 6.830000e-56 228.0
23 TraesCS6D01G098900 chr5D 95.556 45 2 0 744 788 432165264 432165308 3.390000e-09 73.1
24 TraesCS6D01G098900 chr4D 98.305 295 3 2 1 293 88085959 88085665 1.300000e-142 516.0
25 TraesCS6D01G098900 chr4D 98.305 295 3 2 1 293 481898332 481898038 1.300000e-142 516.0
26 TraesCS6D01G098900 chr4B 92.810 153 11 0 2304 2456 509584202 509584354 3.180000e-54 222.0
27 TraesCS6D01G098900 chr7A 93.836 146 9 0 2311 2456 705602071 705602216 1.140000e-53 220.0
28 TraesCS6D01G098900 chr7A 85.714 161 21 2 2297 2456 65331456 65331615 4.200000e-38 169.0
29 TraesCS6D01G098900 chr2B 92.715 151 11 0 2306 2456 371156493 371156643 4.110000e-53 219.0
30 TraesCS6D01G098900 chr2B 84.127 63 8 2 1686 1746 316006617 316006555 2.640000e-05 60.2
31 TraesCS6D01G098900 chr1A 93.103 145 10 0 2312 2456 405678697 405678841 1.910000e-51 213.0
32 TraesCS6D01G098900 chr7B 91.503 153 12 1 2304 2456 667412095 667412246 2.470000e-50 209.0
33 TraesCS6D01G098900 chr3B 88.525 61 5 1 554 614 738656176 738656234 3.390000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G098900 chr6D 62213850 62216305 2455 True 4536.0 4536 100.000 1 2456 1 chr6D.!!$R1 2455
1 TraesCS6D01G098900 chr6A 79356100 79357509 1409 True 2128.0 2128 93.825 856 2277 1 chr6A.!!$R1 1421
2 TraesCS6D01G098900 chr6A 79310149 79311499 1350 True 858.5 1179 88.836 788 2271 2 chr6A.!!$R2 1483
3 TraesCS6D01G098900 chr2D 375280065 375280571 506 True 843.0 843 96.660 286 793 1 chr2D.!!$R1 507
4 TraesCS6D01G098900 chr6B 135935837 135936770 933 True 569.5 577 91.058 788 1635 2 chr6B.!!$R1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.033011 AGCGTGTCAGGGGAGATAGT 60.033 55.0 0.0 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 2475 0.533755 GAAGATGGCCGGTGGATCTG 60.534 60.0 1.9 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.508632 GCCTCTAAAGCGTTGTCACA 58.491 50.000 0.00 0.00 0.00 3.58
21 22 2.076863 GCCTCTAAAGCGTTGTCACAT 58.923 47.619 0.00 0.00 0.00 3.21
22 23 2.159653 GCCTCTAAAGCGTTGTCACATG 60.160 50.000 0.00 0.00 0.00 3.21
23 24 3.067106 CCTCTAAAGCGTTGTCACATGT 58.933 45.455 0.00 0.00 0.00 3.21
24 25 4.242475 CCTCTAAAGCGTTGTCACATGTA 58.758 43.478 0.00 0.00 0.00 2.29
25 26 4.091509 CCTCTAAAGCGTTGTCACATGTAC 59.908 45.833 0.00 0.00 0.00 2.90
26 27 2.941891 AAAGCGTTGTCACATGTACG 57.058 45.000 13.27 13.27 37.09 3.67
27 28 1.860676 AAGCGTTGTCACATGTACGT 58.139 45.000 17.51 0.00 36.45 3.57
28 29 2.710220 AGCGTTGTCACATGTACGTA 57.290 45.000 17.51 0.00 36.45 3.57
29 30 2.592194 AGCGTTGTCACATGTACGTAG 58.408 47.619 17.51 0.00 36.45 3.51
30 31 1.058695 GCGTTGTCACATGTACGTAGC 59.941 52.381 17.51 7.87 36.45 3.58
31 32 2.592194 CGTTGTCACATGTACGTAGCT 58.408 47.619 10.09 0.00 0.00 3.32
32 33 2.592897 CGTTGTCACATGTACGTAGCTC 59.407 50.000 10.09 0.00 0.00 4.09
33 34 2.921754 GTTGTCACATGTACGTAGCTCC 59.078 50.000 0.00 0.00 0.00 4.70
34 35 1.475280 TGTCACATGTACGTAGCTCCC 59.525 52.381 0.00 0.00 0.00 4.30
35 36 1.749634 GTCACATGTACGTAGCTCCCT 59.250 52.381 0.00 0.00 0.00 4.20
36 37 2.947652 GTCACATGTACGTAGCTCCCTA 59.052 50.000 0.00 0.00 0.00 3.53
37 38 2.947652 TCACATGTACGTAGCTCCCTAC 59.052 50.000 0.00 0.00 40.44 3.18
38 39 2.686405 CACATGTACGTAGCTCCCTACA 59.314 50.000 0.00 0.00 43.33 2.74
39 40 3.318275 CACATGTACGTAGCTCCCTACAT 59.682 47.826 0.00 0.00 43.33 2.29
40 41 3.318275 ACATGTACGTAGCTCCCTACATG 59.682 47.826 23.41 23.41 46.37 3.21
41 42 1.679680 TGTACGTAGCTCCCTACATGC 59.320 52.381 0.00 0.00 43.33 4.06
42 43 0.949397 TACGTAGCTCCCTACATGCG 59.051 55.000 0.00 0.00 43.33 4.73
43 44 1.661821 CGTAGCTCCCTACATGCGC 60.662 63.158 0.00 0.00 43.33 6.09
44 45 1.742768 GTAGCTCCCTACATGCGCT 59.257 57.895 9.73 0.00 42.81 5.92
45 46 0.598680 GTAGCTCCCTACATGCGCTG 60.599 60.000 9.73 7.16 42.81 5.18
46 47 1.043116 TAGCTCCCTACATGCGCTGT 61.043 55.000 9.73 13.16 42.13 4.40
47 48 1.043116 AGCTCCCTACATGCGCTGTA 61.043 55.000 9.73 13.60 39.39 2.74
56 57 3.023946 ACATGCGCTGTAGATGATCTC 57.976 47.619 9.73 0.00 35.91 2.75
57 58 1.984297 CATGCGCTGTAGATGATCTCG 59.016 52.381 9.73 0.00 0.00 4.04
58 59 0.318191 TGCGCTGTAGATGATCTCGC 60.318 55.000 16.33 16.33 41.22 5.03
59 60 1.006314 GCGCTGTAGATGATCTCGCC 61.006 60.000 13.30 0.00 35.71 5.54
60 61 0.595588 CGCTGTAGATGATCTCGCCT 59.404 55.000 0.00 0.00 0.00 5.52
61 62 1.400888 CGCTGTAGATGATCTCGCCTC 60.401 57.143 0.00 0.00 0.00 4.70
62 63 1.885887 GCTGTAGATGATCTCGCCTCT 59.114 52.381 0.00 0.00 0.00 3.69
63 64 2.351641 GCTGTAGATGATCTCGCCTCTG 60.352 54.545 0.00 0.00 0.00 3.35
64 65 2.884012 CTGTAGATGATCTCGCCTCTGT 59.116 50.000 0.00 0.00 0.00 3.41
65 66 2.881513 TGTAGATGATCTCGCCTCTGTC 59.118 50.000 0.00 0.00 0.00 3.51
66 67 2.064434 AGATGATCTCGCCTCTGTCA 57.936 50.000 0.00 0.00 0.00 3.58
67 68 2.596346 AGATGATCTCGCCTCTGTCAT 58.404 47.619 0.00 0.00 32.59 3.06
68 69 2.557924 AGATGATCTCGCCTCTGTCATC 59.442 50.000 5.72 5.72 43.31 2.92
69 70 1.767759 TGATCTCGCCTCTGTCATCA 58.232 50.000 0.00 0.00 0.00 3.07
70 71 1.406898 TGATCTCGCCTCTGTCATCAC 59.593 52.381 0.00 0.00 0.00 3.06
71 72 0.383590 ATCTCGCCTCTGTCATCACG 59.616 55.000 0.00 0.00 0.00 4.35
72 73 1.875813 CTCGCCTCTGTCATCACGC 60.876 63.158 0.00 0.00 0.00 5.34
73 74 2.125952 CGCCTCTGTCATCACGCA 60.126 61.111 0.00 0.00 0.00 5.24
74 75 2.163390 CGCCTCTGTCATCACGCAG 61.163 63.158 0.00 0.00 0.00 5.18
75 76 1.812922 GCCTCTGTCATCACGCAGG 60.813 63.158 0.00 0.00 33.81 4.85
76 77 1.893062 CCTCTGTCATCACGCAGGA 59.107 57.895 0.00 0.00 33.81 3.86
77 78 0.463204 CCTCTGTCATCACGCAGGAT 59.537 55.000 0.00 0.00 33.81 3.24
78 79 1.537776 CCTCTGTCATCACGCAGGATC 60.538 57.143 0.00 0.00 33.81 3.36
79 80 1.135721 CTCTGTCATCACGCAGGATCA 59.864 52.381 0.00 0.00 33.81 2.92
80 81 1.758862 TCTGTCATCACGCAGGATCAT 59.241 47.619 0.00 0.00 33.81 2.45
81 82 2.958355 TCTGTCATCACGCAGGATCATA 59.042 45.455 0.00 0.00 33.81 2.15
82 83 3.055591 CTGTCATCACGCAGGATCATAC 58.944 50.000 0.00 0.00 0.00 2.39
83 84 2.224042 TGTCATCACGCAGGATCATACC 60.224 50.000 0.00 0.00 0.00 2.73
84 85 2.036475 GTCATCACGCAGGATCATACCT 59.964 50.000 0.00 0.00 41.43 3.08
85 86 2.297315 TCATCACGCAGGATCATACCTC 59.703 50.000 0.00 0.00 38.32 3.85
86 87 1.040646 TCACGCAGGATCATACCTCC 58.959 55.000 0.00 0.00 38.32 4.30
87 88 1.043816 CACGCAGGATCATACCTCCT 58.956 55.000 0.00 0.00 44.11 3.69
88 89 1.000283 CACGCAGGATCATACCTCCTC 60.000 57.143 0.00 0.00 41.29 3.71
89 90 0.605589 CGCAGGATCATACCTCCTCC 59.394 60.000 0.00 0.00 41.29 4.30
90 91 0.980423 GCAGGATCATACCTCCTCCC 59.020 60.000 0.00 0.00 41.29 4.30
91 92 1.261480 CAGGATCATACCTCCTCCCG 58.739 60.000 0.00 0.00 41.29 5.14
92 93 0.543174 AGGATCATACCTCCTCCCGC 60.543 60.000 0.00 0.00 38.87 6.13
93 94 1.545706 GGATCATACCTCCTCCCGCC 61.546 65.000 0.00 0.00 0.00 6.13
94 95 1.878656 GATCATACCTCCTCCCGCCG 61.879 65.000 0.00 0.00 0.00 6.46
95 96 4.301027 CATACCTCCTCCCGCCGC 62.301 72.222 0.00 0.00 0.00 6.53
96 97 4.853142 ATACCTCCTCCCGCCGCA 62.853 66.667 0.00 0.00 0.00 5.69
110 111 4.838152 CGCACCTGTGGCCGCTAT 62.838 66.667 18.96 0.00 0.00 2.97
111 112 3.204827 GCACCTGTGGCCGCTATG 61.205 66.667 18.96 13.58 0.00 2.23
112 113 2.268920 CACCTGTGGCCGCTATGT 59.731 61.111 18.96 8.93 0.00 2.29
113 114 1.520192 CACCTGTGGCCGCTATGTA 59.480 57.895 18.96 0.00 0.00 2.29
114 115 0.530650 CACCTGTGGCCGCTATGTAG 60.531 60.000 18.96 5.69 0.00 2.74
115 116 1.595382 CCTGTGGCCGCTATGTAGC 60.595 63.158 18.96 1.92 45.62 3.58
116 117 1.443407 CTGTGGCCGCTATGTAGCT 59.557 57.895 18.96 0.00 46.85 3.32
117 118 0.598680 CTGTGGCCGCTATGTAGCTC 60.599 60.000 18.96 2.39 46.85 4.09
118 119 1.301009 GTGGCCGCTATGTAGCTCC 60.301 63.158 9.68 10.63 46.85 4.70
119 120 2.344129 GGCCGCTATGTAGCTCCC 59.656 66.667 10.05 6.33 46.85 4.30
120 121 2.507854 GGCCGCTATGTAGCTCCCA 61.508 63.158 10.05 0.00 46.85 4.37
121 122 1.674057 GCCGCTATGTAGCTCCCAT 59.326 57.895 10.05 0.00 46.85 4.00
122 123 0.390472 GCCGCTATGTAGCTCCCATC 60.390 60.000 10.05 0.00 46.85 3.51
123 124 0.247736 CCGCTATGTAGCTCCCATCC 59.752 60.000 10.05 0.00 46.85 3.51
124 125 0.109086 CGCTATGTAGCTCCCATCCG 60.109 60.000 10.05 0.00 46.85 4.18
125 126 0.969894 GCTATGTAGCTCCCATCCGT 59.030 55.000 4.81 0.00 45.62 4.69
126 127 1.337260 GCTATGTAGCTCCCATCCGTG 60.337 57.143 4.81 0.00 45.62 4.94
127 128 1.964223 CTATGTAGCTCCCATCCGTGT 59.036 52.381 0.00 0.00 0.00 4.49
128 129 1.204146 ATGTAGCTCCCATCCGTGTT 58.796 50.000 0.00 0.00 0.00 3.32
129 130 0.535335 TGTAGCTCCCATCCGTGTTC 59.465 55.000 0.00 0.00 0.00 3.18
130 131 0.535335 GTAGCTCCCATCCGTGTTCA 59.465 55.000 0.00 0.00 0.00 3.18
131 132 1.066430 GTAGCTCCCATCCGTGTTCAA 60.066 52.381 0.00 0.00 0.00 2.69
132 133 0.321653 AGCTCCCATCCGTGTTCAAC 60.322 55.000 0.00 0.00 0.00 3.18
133 134 0.321653 GCTCCCATCCGTGTTCAACT 60.322 55.000 0.00 0.00 0.00 3.16
134 135 1.882352 GCTCCCATCCGTGTTCAACTT 60.882 52.381 0.00 0.00 0.00 2.66
135 136 2.614481 GCTCCCATCCGTGTTCAACTTA 60.614 50.000 0.00 0.00 0.00 2.24
136 137 3.670625 CTCCCATCCGTGTTCAACTTAA 58.329 45.455 0.00 0.00 0.00 1.85
137 138 3.404899 TCCCATCCGTGTTCAACTTAAC 58.595 45.455 0.00 0.00 0.00 2.01
138 139 2.486592 CCCATCCGTGTTCAACTTAACC 59.513 50.000 0.00 0.00 0.00 2.85
139 140 2.486592 CCATCCGTGTTCAACTTAACCC 59.513 50.000 0.00 0.00 0.00 4.11
140 141 3.142951 CATCCGTGTTCAACTTAACCCA 58.857 45.455 0.00 0.00 0.00 4.51
141 142 2.841215 TCCGTGTTCAACTTAACCCAG 58.159 47.619 0.00 0.00 0.00 4.45
142 143 1.265905 CCGTGTTCAACTTAACCCAGC 59.734 52.381 0.00 0.00 0.00 4.85
143 144 1.265905 CGTGTTCAACTTAACCCAGCC 59.734 52.381 0.00 0.00 0.00 4.85
144 145 1.611977 GTGTTCAACTTAACCCAGCCC 59.388 52.381 0.00 0.00 0.00 5.19
145 146 0.879090 GTTCAACTTAACCCAGCCCG 59.121 55.000 0.00 0.00 0.00 6.13
146 147 0.250989 TTCAACTTAACCCAGCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
147 148 2.035155 AACTTAACCCAGCCCGGC 59.965 61.111 0.00 0.00 0.00 6.13
148 149 2.535331 AACTTAACCCAGCCCGGCT 61.535 57.895 5.94 5.94 40.77 5.52
188 189 4.388499 CACCTTGGGCGCCGTACT 62.388 66.667 22.54 0.00 0.00 2.73
189 190 3.633116 ACCTTGGGCGCCGTACTT 61.633 61.111 22.54 0.68 0.00 2.24
190 191 2.359478 CCTTGGGCGCCGTACTTT 60.359 61.111 22.54 0.00 0.00 2.66
191 192 2.396157 CCTTGGGCGCCGTACTTTC 61.396 63.158 22.54 4.79 0.00 2.62
192 193 1.375523 CTTGGGCGCCGTACTTTCT 60.376 57.895 22.54 0.00 0.00 2.52
193 194 1.635663 CTTGGGCGCCGTACTTTCTG 61.636 60.000 22.54 0.00 0.00 3.02
194 195 2.818274 GGGCGCCGTACTTTCTGG 60.818 66.667 22.54 0.00 0.00 3.86
195 196 2.263540 GGCGCCGTACTTTCTGGA 59.736 61.111 12.58 0.00 0.00 3.86
196 197 1.810030 GGCGCCGTACTTTCTGGAG 60.810 63.158 12.58 0.00 0.00 3.86
197 198 2.453638 GCGCCGTACTTTCTGGAGC 61.454 63.158 0.00 0.00 41.26 4.70
198 199 2.158959 CGCCGTACTTTCTGGAGCG 61.159 63.158 0.00 0.00 35.82 5.03
199 200 2.453638 GCCGTACTTTCTGGAGCGC 61.454 63.158 0.00 0.00 0.00 5.92
200 201 2.158959 CCGTACTTTCTGGAGCGCG 61.159 63.158 0.00 0.00 0.00 6.86
201 202 1.443872 CGTACTTTCTGGAGCGCGT 60.444 57.895 8.43 0.00 0.00 6.01
202 203 1.674611 CGTACTTTCTGGAGCGCGTG 61.675 60.000 8.43 0.00 0.00 5.34
203 204 1.080093 TACTTTCTGGAGCGCGTGG 60.080 57.895 8.43 0.00 0.00 4.94
204 205 1.812686 TACTTTCTGGAGCGCGTGGT 61.813 55.000 8.43 0.00 0.00 4.16
205 206 2.664851 TTTCTGGAGCGCGTGGTG 60.665 61.111 4.91 0.00 0.00 4.17
206 207 4.680237 TTCTGGAGCGCGTGGTGG 62.680 66.667 4.91 0.00 0.00 4.61
210 211 4.980805 GGAGCGCGTGGTGGTGAA 62.981 66.667 4.91 0.00 0.00 3.18
211 212 3.414700 GAGCGCGTGGTGGTGAAG 61.415 66.667 4.91 0.00 0.00 3.02
212 213 4.988598 AGCGCGTGGTGGTGAAGG 62.989 66.667 8.43 0.00 0.00 3.46
215 216 3.357079 GCGTGGTGGTGAAGGCAG 61.357 66.667 0.00 0.00 0.00 4.85
216 217 2.669569 CGTGGTGGTGAAGGCAGG 60.670 66.667 0.00 0.00 0.00 4.85
217 218 2.836154 GTGGTGGTGAAGGCAGGA 59.164 61.111 0.00 0.00 0.00 3.86
218 219 1.600916 GTGGTGGTGAAGGCAGGAC 60.601 63.158 0.00 0.00 0.00 3.85
219 220 2.034221 GGTGGTGAAGGCAGGACC 59.966 66.667 0.00 0.00 39.61 4.46
220 221 2.829384 GGTGGTGAAGGCAGGACCA 61.829 63.158 0.00 0.00 43.14 4.02
221 222 2.836154 TGGTGAAGGCAGGACCAC 59.164 61.111 0.00 0.00 43.14 4.16
222 223 2.034221 GGTGAAGGCAGGACCACC 59.966 66.667 0.00 0.00 43.14 4.61
223 224 2.829384 GGTGAAGGCAGGACCACCA 61.829 63.158 0.00 0.00 46.13 4.17
224 225 1.380302 GTGAAGGCAGGACCACCAT 59.620 57.895 6.36 0.00 43.14 3.55
225 226 0.678048 GTGAAGGCAGGACCACCATC 60.678 60.000 6.36 4.41 43.14 3.51
226 227 0.842030 TGAAGGCAGGACCACCATCT 60.842 55.000 9.43 0.00 43.14 2.90
227 228 0.329596 GAAGGCAGGACCACCATCTT 59.670 55.000 6.36 0.00 43.14 2.40
228 229 0.329596 AAGGCAGGACCACCATCTTC 59.670 55.000 6.36 0.00 43.14 2.87
229 230 1.077429 GGCAGGACCACCATCTTCC 60.077 63.158 0.00 0.00 38.86 3.46
230 231 1.077429 GCAGGACCACCATCTTCCC 60.077 63.158 0.00 0.00 38.94 3.97
231 232 1.566298 GCAGGACCACCATCTTCCCT 61.566 60.000 0.00 0.00 38.94 4.20
232 233 0.995024 CAGGACCACCATCTTCCCTT 59.005 55.000 0.00 0.00 38.94 3.95
233 234 1.355720 CAGGACCACCATCTTCCCTTT 59.644 52.381 0.00 0.00 38.94 3.11
234 235 1.636003 AGGACCACCATCTTCCCTTTC 59.364 52.381 0.00 0.00 38.94 2.62
235 236 1.636003 GGACCACCATCTTCCCTTTCT 59.364 52.381 0.00 0.00 35.97 2.52
236 237 2.356227 GGACCACCATCTTCCCTTTCTC 60.356 54.545 0.00 0.00 35.97 2.87
237 238 2.573915 GACCACCATCTTCCCTTTCTCT 59.426 50.000 0.00 0.00 0.00 3.10
238 239 3.775316 GACCACCATCTTCCCTTTCTCTA 59.225 47.826 0.00 0.00 0.00 2.43
239 240 3.777522 ACCACCATCTTCCCTTTCTCTAG 59.222 47.826 0.00 0.00 0.00 2.43
240 241 3.135530 CCACCATCTTCCCTTTCTCTAGG 59.864 52.174 0.00 0.00 34.92 3.02
241 242 3.777522 CACCATCTTCCCTTTCTCTAGGT 59.222 47.826 0.00 0.00 33.17 3.08
242 243 4.226168 CACCATCTTCCCTTTCTCTAGGTT 59.774 45.833 0.00 0.00 33.17 3.50
243 244 5.425539 CACCATCTTCCCTTTCTCTAGGTTA 59.574 44.000 0.00 0.00 33.17 2.85
244 245 5.425862 ACCATCTTCCCTTTCTCTAGGTTAC 59.574 44.000 0.00 0.00 33.17 2.50
245 246 5.163290 CCATCTTCCCTTTCTCTAGGTTACC 60.163 48.000 0.00 0.00 33.17 2.85
246 247 5.019657 TCTTCCCTTTCTCTAGGTTACCA 57.980 43.478 3.51 0.00 33.17 3.25
247 248 5.600749 TCTTCCCTTTCTCTAGGTTACCAT 58.399 41.667 3.51 0.00 33.17 3.55
248 249 5.661759 TCTTCCCTTTCTCTAGGTTACCATC 59.338 44.000 3.51 0.00 33.17 3.51
249 250 4.955335 TCCCTTTCTCTAGGTTACCATCA 58.045 43.478 3.51 0.00 33.17 3.07
250 251 4.962995 TCCCTTTCTCTAGGTTACCATCAG 59.037 45.833 3.51 0.00 33.17 2.90
251 252 4.101741 CCCTTTCTCTAGGTTACCATCAGG 59.898 50.000 3.51 0.00 35.67 3.86
252 253 4.962995 CCTTTCTCTAGGTTACCATCAGGA 59.037 45.833 3.51 0.00 38.69 3.86
253 254 5.604650 CCTTTCTCTAGGTTACCATCAGGAT 59.395 44.000 3.51 0.00 38.69 3.24
254 255 6.463614 CCTTTCTCTAGGTTACCATCAGGATG 60.464 46.154 3.51 2.24 38.69 3.51
255 256 5.144159 TCTCTAGGTTACCATCAGGATGT 57.856 43.478 3.51 0.31 37.11 3.06
256 257 5.529289 TCTCTAGGTTACCATCAGGATGTT 58.471 41.667 3.51 0.00 37.11 2.71
257 258 5.363868 TCTCTAGGTTACCATCAGGATGTTG 59.636 44.000 3.51 0.00 37.11 3.33
258 259 3.004752 AGGTTACCATCAGGATGTTGC 57.995 47.619 3.51 0.00 37.11 4.17
259 260 2.578021 AGGTTACCATCAGGATGTTGCT 59.422 45.455 3.51 0.00 37.11 3.91
260 261 3.010584 AGGTTACCATCAGGATGTTGCTT 59.989 43.478 3.51 0.00 37.11 3.91
261 262 3.763897 GGTTACCATCAGGATGTTGCTTT 59.236 43.478 8.35 0.00 37.11 3.51
262 263 4.947388 GGTTACCATCAGGATGTTGCTTTA 59.053 41.667 8.35 0.00 37.11 1.85
263 264 5.594317 GGTTACCATCAGGATGTTGCTTTAT 59.406 40.000 8.35 0.00 37.11 1.40
264 265 6.460123 GGTTACCATCAGGATGTTGCTTTATG 60.460 42.308 8.35 0.00 37.11 1.90
265 266 3.382546 ACCATCAGGATGTTGCTTTATGC 59.617 43.478 8.35 0.00 38.46 3.14
266 267 3.382227 CCATCAGGATGTTGCTTTATGCA 59.618 43.478 8.35 0.00 44.04 3.96
267 268 4.357142 CATCAGGATGTTGCTTTATGCAC 58.643 43.478 0.00 0.00 43.88 4.57
268 269 3.419943 TCAGGATGTTGCTTTATGCACA 58.580 40.909 0.00 0.00 43.88 4.57
269 270 4.018490 TCAGGATGTTGCTTTATGCACAT 58.982 39.130 0.00 7.46 43.88 3.21
270 271 4.142337 TCAGGATGTTGCTTTATGCACATG 60.142 41.667 10.79 0.00 43.88 3.21
271 272 6.324790 TCAGGATGTTGCTTTATGCACATGA 61.325 40.000 0.00 3.46 43.88 3.07
272 273 8.064099 TCAGGATGTTGCTTTATGCACATGAG 62.064 42.308 0.00 0.00 43.88 2.90
420 421 2.716017 GGAGAGCGTGTCAGGGGAG 61.716 68.421 0.00 0.00 0.00 4.30
422 423 1.000993 AGAGCGTGTCAGGGGAGAT 59.999 57.895 0.00 0.00 0.00 2.75
425 426 0.033011 AGCGTGTCAGGGGAGATAGT 60.033 55.000 0.00 0.00 0.00 2.12
426 427 0.824759 GCGTGTCAGGGGAGATAGTT 59.175 55.000 0.00 0.00 0.00 2.24
536 537 3.379240 TGCATGTGAAACCATGAAAACG 58.621 40.909 5.39 0.00 43.99 3.60
552 553 4.213270 TGAAAACGTGGCAGAGAAACATAG 59.787 41.667 0.00 0.00 0.00 2.23
557 558 5.003804 ACGTGGCAGAGAAACATAGATTTT 58.996 37.500 0.00 0.00 0.00 1.82
558 559 5.106555 ACGTGGCAGAGAAACATAGATTTTG 60.107 40.000 0.00 0.00 0.00 2.44
566 567 6.650807 AGAGAAACATAGATTTTGAACAGCGA 59.349 34.615 0.00 0.00 0.00 4.93
574 575 1.593196 TTTGAACAGCGACTTGGGAG 58.407 50.000 0.00 0.00 0.00 4.30
576 577 2.357517 AACAGCGACTTGGGAGCG 60.358 61.111 0.00 0.00 35.78 5.03
594 595 2.459442 GCTGCATGCCTCGAGTCAC 61.459 63.158 16.68 0.83 35.15 3.67
628 629 1.382420 CTCCTGCCAGCCTACTCCT 60.382 63.158 0.00 0.00 0.00 3.69
808 810 2.316108 GGGGTGAATTGTGTGTTCCTT 58.684 47.619 0.00 0.00 0.00 3.36
832 834 2.933492 GCCGTTGCTCTTGTGGTATGTA 60.933 50.000 0.00 0.00 33.53 2.29
836 838 4.381185 CGTTGCTCTTGTGGTATGTACCTA 60.381 45.833 10.36 0.00 46.58 3.08
846 848 3.036091 GGTATGTACCTACCTTGCCTGA 58.964 50.000 17.44 0.00 43.10 3.86
847 849 3.453353 GGTATGTACCTACCTTGCCTGAA 59.547 47.826 17.44 0.00 43.10 3.02
848 850 3.629142 ATGTACCTACCTTGCCTGAAC 57.371 47.619 0.00 0.00 0.00 3.18
849 851 2.331166 TGTACCTACCTTGCCTGAACA 58.669 47.619 0.00 0.00 0.00 3.18
850 852 2.706723 TGTACCTACCTTGCCTGAACAA 59.293 45.455 0.00 0.00 0.00 2.83
851 853 3.136809 TGTACCTACCTTGCCTGAACAAA 59.863 43.478 0.00 0.00 0.00 2.83
852 854 2.583143 ACCTACCTTGCCTGAACAAAC 58.417 47.619 0.00 0.00 0.00 2.93
853 855 1.886542 CCTACCTTGCCTGAACAAACC 59.113 52.381 0.00 0.00 0.00 3.27
854 856 2.582052 CTACCTTGCCTGAACAAACCA 58.418 47.619 0.00 0.00 0.00 3.67
861 863 4.008074 TGCCTGAACAAACCAAACAAAA 57.992 36.364 0.00 0.00 0.00 2.44
866 868 6.729187 CCTGAACAAACCAAACAAAACAAAA 58.271 32.000 0.00 0.00 0.00 2.44
869 871 9.884465 CTGAACAAACCAAACAAAACAAAATAA 57.116 25.926 0.00 0.00 0.00 1.40
927 931 6.201044 CCTCTCAATCATAGCGTATTTCGTTT 59.799 38.462 0.00 0.00 42.13 3.60
1212 1299 7.060383 TCCATTTCTTTTCTGTAAATTGCCA 57.940 32.000 0.00 0.00 0.00 4.92
1223 1310 6.341316 TCTGTAAATTGCCAGACTACTCATC 58.659 40.000 3.78 0.00 32.93 2.92
1230 1317 2.158842 GCCAGACTACTCATCTTGGCAT 60.159 50.000 8.32 0.00 38.85 4.40
1231 1318 3.726607 CCAGACTACTCATCTTGGCATC 58.273 50.000 0.00 0.00 0.00 3.91
1277 1364 4.889832 CTTGGATTCGATTCAAGGGAAG 57.110 45.455 9.36 0.61 36.25 3.46
1317 1404 2.028420 TGTGCGATTGGATCAAGAGG 57.972 50.000 0.00 0.00 0.00 3.69
1455 1549 4.019321 CCTTCTTCCAAGGTTAGTGGATGA 60.019 45.833 5.25 5.25 44.62 2.92
1527 1624 7.014615 TCTGATCAAGCAAGATACTAGCACATA 59.985 37.037 0.00 0.00 0.00 2.29
1587 1687 6.411630 TCGTTATTGTATTTGTACAGGTGC 57.588 37.500 0.00 0.00 0.00 5.01
1625 1730 3.485394 TGCTTGGCACTATGTTCTTTCA 58.515 40.909 0.00 0.00 31.71 2.69
1837 1947 3.297134 AGATGGATGGGCAACGTAATT 57.703 42.857 0.00 0.00 37.60 1.40
1881 1991 2.039084 CCCTGCTGTCTTGTTTCCTAGT 59.961 50.000 0.00 0.00 0.00 2.57
1882 1992 3.260884 CCCTGCTGTCTTGTTTCCTAGTA 59.739 47.826 0.00 0.00 0.00 1.82
1883 1993 4.262894 CCCTGCTGTCTTGTTTCCTAGTAA 60.263 45.833 0.00 0.00 0.00 2.24
1884 1994 4.932200 CCTGCTGTCTTGTTTCCTAGTAAG 59.068 45.833 0.00 0.00 0.00 2.34
2091 2201 5.590663 GGACCCATGGATCTAAAGTTTCTTC 59.409 44.000 15.22 0.00 0.00 2.87
2281 2395 9.890629 TCTTATACAGAGAAAATGTGCAAGTAT 57.109 29.630 0.00 0.00 32.02 2.12
2286 2400 8.798859 ACAGAGAAAATGTGCAAGTATATTCT 57.201 30.769 0.00 0.00 0.00 2.40
2287 2401 9.890629 ACAGAGAAAATGTGCAAGTATATTCTA 57.109 29.630 0.00 0.00 0.00 2.10
2294 2408 9.988350 AAATGTGCAAGTATATTCTAGAAAACG 57.012 29.630 9.71 0.00 0.00 3.60
2295 2409 8.942338 ATGTGCAAGTATATTCTAGAAAACGA 57.058 30.769 9.71 0.00 0.00 3.85
2296 2410 8.181487 TGTGCAAGTATATTCTAGAAAACGAC 57.819 34.615 9.71 5.76 0.00 4.34
2297 2411 7.008901 TGTGCAAGTATATTCTAGAAAACGACG 59.991 37.037 9.71 0.00 0.00 5.12
2298 2412 6.020121 TGCAAGTATATTCTAGAAAACGACGC 60.020 38.462 9.71 12.54 0.00 5.19
2299 2413 6.561717 GCAAGTATATTCTAGAAAACGACGCC 60.562 42.308 9.71 0.00 0.00 5.68
2300 2414 6.140303 AGTATATTCTAGAAAACGACGCCA 57.860 37.500 9.71 0.00 0.00 5.69
2301 2415 6.207213 AGTATATTCTAGAAAACGACGCCAG 58.793 40.000 9.71 0.00 0.00 4.85
2302 2416 1.425412 TTCTAGAAAACGACGCCAGC 58.575 50.000 1.68 0.00 0.00 4.85
2303 2417 0.731514 TCTAGAAAACGACGCCAGCG 60.732 55.000 11.05 11.05 46.03 5.18
2304 2418 2.279937 CTAGAAAACGACGCCAGCGC 62.280 60.000 12.72 0.00 44.19 5.92
2305 2419 2.758770 TAGAAAACGACGCCAGCGCT 62.759 55.000 12.72 2.64 44.19 5.92
2306 2420 3.631049 GAAAACGACGCCAGCGCTC 62.631 63.158 7.13 8.10 44.19 5.03
2354 2468 3.861263 GCGAAAACCTAGCCGCCG 61.861 66.667 0.00 0.00 41.59 6.46
2355 2469 3.861263 CGAAAACCTAGCCGCCGC 61.861 66.667 0.00 0.00 0.00 6.53
2356 2470 3.506096 GAAAACCTAGCCGCCGCC 61.506 66.667 0.00 0.00 34.57 6.13
2357 2471 4.338710 AAAACCTAGCCGCCGCCA 62.339 61.111 0.00 0.00 34.57 5.69
2358 2472 4.778143 AAACCTAGCCGCCGCCAG 62.778 66.667 0.00 0.00 34.57 4.85
2376 2490 4.552365 CGCAGATCCACCGGCCAT 62.552 66.667 0.00 0.00 0.00 4.40
2377 2491 2.592861 GCAGATCCACCGGCCATC 60.593 66.667 0.00 0.00 0.00 3.51
2378 2492 3.112205 GCAGATCCACCGGCCATCT 62.112 63.158 0.00 2.51 0.00 2.90
2379 2493 1.528824 CAGATCCACCGGCCATCTT 59.471 57.895 0.00 0.00 0.00 2.40
2380 2494 0.533755 CAGATCCACCGGCCATCTTC 60.534 60.000 0.00 0.00 0.00 2.87
2381 2495 1.227973 GATCCACCGGCCATCTTCC 60.228 63.158 0.00 0.00 0.00 3.46
2382 2496 2.682582 GATCCACCGGCCATCTTCCC 62.683 65.000 0.00 0.00 0.00 3.97
2383 2497 4.506255 CCACCGGCCATCTTCCCC 62.506 72.222 0.00 0.00 0.00 4.81
2384 2498 3.411517 CACCGGCCATCTTCCCCT 61.412 66.667 0.00 0.00 0.00 4.79
2385 2499 3.090532 ACCGGCCATCTTCCCCTC 61.091 66.667 0.00 0.00 0.00 4.30
2386 2500 4.241555 CCGGCCATCTTCCCCTCG 62.242 72.222 2.24 0.00 0.00 4.63
2387 2501 4.918201 CGGCCATCTTCCCCTCGC 62.918 72.222 2.24 0.00 0.00 5.03
2388 2502 4.570874 GGCCATCTTCCCCTCGCC 62.571 72.222 0.00 0.00 0.00 5.54
2389 2503 4.918201 GCCATCTTCCCCTCGCCG 62.918 72.222 0.00 0.00 0.00 6.46
2390 2504 4.918201 CCATCTTCCCCTCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
2391 2505 4.918201 CATCTTCCCCTCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
2452 2566 4.475135 GCGGGGCACTTCCTCCTC 62.475 72.222 0.00 0.00 34.39 3.71
2453 2567 3.787001 CGGGGCACTTCCTCCTCC 61.787 72.222 0.00 0.00 34.39 4.30
2454 2568 3.412408 GGGGCACTTCCTCCTCCC 61.412 72.222 0.00 0.00 36.25 4.30
2455 2569 3.787001 GGGCACTTCCTCCTCCCG 61.787 72.222 0.00 0.00 34.39 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.508632 TGTGACAACGCTTTAGAGGC 58.491 50.000 0.00 0.00 0.00 4.70
2 3 3.067106 ACATGTGACAACGCTTTAGAGG 58.933 45.455 0.00 0.00 0.00 3.69
3 4 4.201494 CGTACATGTGACAACGCTTTAGAG 60.201 45.833 9.11 0.00 0.00 2.43
4 5 3.671459 CGTACATGTGACAACGCTTTAGA 59.329 43.478 9.11 0.00 0.00 2.10
5 6 3.427528 ACGTACATGTGACAACGCTTTAG 59.572 43.478 16.65 0.00 38.87 1.85
6 7 3.382855 ACGTACATGTGACAACGCTTTA 58.617 40.909 16.65 0.00 38.87 1.85
7 8 2.206750 ACGTACATGTGACAACGCTTT 58.793 42.857 16.65 0.00 38.87 3.51
8 9 1.860676 ACGTACATGTGACAACGCTT 58.139 45.000 16.65 0.00 38.87 4.68
9 10 2.592194 CTACGTACATGTGACAACGCT 58.408 47.619 16.65 8.38 38.87 5.07
10 11 1.058695 GCTACGTACATGTGACAACGC 59.941 52.381 16.65 5.64 38.87 4.84
11 12 2.592194 AGCTACGTACATGTGACAACG 58.408 47.619 15.45 15.45 40.99 4.10
12 13 2.921754 GGAGCTACGTACATGTGACAAC 59.078 50.000 9.11 0.00 0.00 3.32
13 14 2.094390 GGGAGCTACGTACATGTGACAA 60.094 50.000 9.11 0.00 0.00 3.18
14 15 1.475280 GGGAGCTACGTACATGTGACA 59.525 52.381 9.11 0.00 0.00 3.58
15 16 1.749634 AGGGAGCTACGTACATGTGAC 59.250 52.381 9.11 2.12 0.00 3.67
16 17 2.139323 AGGGAGCTACGTACATGTGA 57.861 50.000 9.11 0.00 0.00 3.58
17 18 2.686405 TGTAGGGAGCTACGTACATGTG 59.314 50.000 24.28 0.00 36.96 3.21
18 19 3.008835 TGTAGGGAGCTACGTACATGT 57.991 47.619 24.28 2.69 36.96 3.21
21 22 1.679680 GCATGTAGGGAGCTACGTACA 59.320 52.381 28.64 28.64 43.30 2.90
22 23 1.334779 CGCATGTAGGGAGCTACGTAC 60.335 57.143 19.82 19.82 32.80 3.67
23 24 0.949397 CGCATGTAGGGAGCTACGTA 59.051 55.000 0.00 0.00 32.80 3.57
24 25 1.734137 CGCATGTAGGGAGCTACGT 59.266 57.895 0.00 0.00 32.80 3.57
25 26 1.661821 GCGCATGTAGGGAGCTACG 60.662 63.158 0.30 0.00 32.80 3.51
26 27 0.598680 CAGCGCATGTAGGGAGCTAC 60.599 60.000 11.47 0.00 39.45 3.58
27 28 1.043116 ACAGCGCATGTAGGGAGCTA 61.043 55.000 11.47 0.00 41.60 3.32
28 29 1.043116 TACAGCGCATGTAGGGAGCT 61.043 55.000 11.47 0.00 43.66 4.09
29 30 1.441729 TACAGCGCATGTAGGGAGC 59.558 57.895 11.47 0.00 43.66 4.70
35 36 3.365364 CGAGATCATCTACAGCGCATGTA 60.365 47.826 11.47 14.23 43.66 2.29
36 37 2.606551 CGAGATCATCTACAGCGCATGT 60.607 50.000 11.47 13.82 46.45 3.21
37 38 1.984297 CGAGATCATCTACAGCGCATG 59.016 52.381 11.47 7.81 0.00 4.06
38 39 1.668337 GCGAGATCATCTACAGCGCAT 60.668 52.381 11.47 0.00 42.21 4.73
39 40 0.318191 GCGAGATCATCTACAGCGCA 60.318 55.000 11.47 0.00 42.21 6.09
40 41 1.006314 GGCGAGATCATCTACAGCGC 61.006 60.000 9.43 9.43 41.95 5.92
41 42 0.595588 AGGCGAGATCATCTACAGCG 59.404 55.000 0.00 0.00 0.00 5.18
42 43 1.885887 AGAGGCGAGATCATCTACAGC 59.114 52.381 0.00 0.00 0.00 4.40
43 44 2.884012 ACAGAGGCGAGATCATCTACAG 59.116 50.000 0.00 0.00 0.00 2.74
44 45 2.881513 GACAGAGGCGAGATCATCTACA 59.118 50.000 0.00 0.00 0.00 2.74
45 46 2.881513 TGACAGAGGCGAGATCATCTAC 59.118 50.000 0.00 0.00 0.00 2.59
46 47 3.214696 TGACAGAGGCGAGATCATCTA 57.785 47.619 0.00 0.00 0.00 1.98
47 48 2.064434 TGACAGAGGCGAGATCATCT 57.936 50.000 0.00 0.00 0.00 2.90
48 49 2.295629 TGATGACAGAGGCGAGATCATC 59.704 50.000 14.16 14.16 43.88 2.92
49 50 2.035704 GTGATGACAGAGGCGAGATCAT 59.964 50.000 0.00 0.00 32.74 2.45
50 51 1.406898 GTGATGACAGAGGCGAGATCA 59.593 52.381 0.00 0.00 0.00 2.92
51 52 1.599171 CGTGATGACAGAGGCGAGATC 60.599 57.143 0.00 0.00 0.00 2.75
52 53 0.383590 CGTGATGACAGAGGCGAGAT 59.616 55.000 0.00 0.00 0.00 2.75
53 54 1.803289 CGTGATGACAGAGGCGAGA 59.197 57.895 0.00 0.00 0.00 4.04
54 55 1.875813 GCGTGATGACAGAGGCGAG 60.876 63.158 0.00 0.00 0.00 5.03
55 56 2.181777 GCGTGATGACAGAGGCGA 59.818 61.111 0.00 0.00 0.00 5.54
56 57 2.125952 TGCGTGATGACAGAGGCG 60.126 61.111 0.00 0.00 0.00 5.52
57 58 1.812922 CCTGCGTGATGACAGAGGC 60.813 63.158 0.00 0.00 35.90 4.70
58 59 0.463204 ATCCTGCGTGATGACAGAGG 59.537 55.000 0.00 0.00 35.90 3.69
59 60 1.135721 TGATCCTGCGTGATGACAGAG 59.864 52.381 0.00 0.00 35.90 3.35
60 61 1.185315 TGATCCTGCGTGATGACAGA 58.815 50.000 0.00 0.00 35.90 3.41
61 62 2.235845 ATGATCCTGCGTGATGACAG 57.764 50.000 0.00 0.00 0.00 3.51
62 63 2.224042 GGTATGATCCTGCGTGATGACA 60.224 50.000 0.00 0.00 0.00 3.58
63 64 2.036475 AGGTATGATCCTGCGTGATGAC 59.964 50.000 0.00 0.00 36.35 3.06
64 65 2.297315 GAGGTATGATCCTGCGTGATGA 59.703 50.000 0.00 0.00 38.02 2.92
65 66 2.611473 GGAGGTATGATCCTGCGTGATG 60.611 54.545 0.00 0.00 38.02 3.07
66 67 1.620819 GGAGGTATGATCCTGCGTGAT 59.379 52.381 0.00 0.00 38.02 3.06
67 68 1.040646 GGAGGTATGATCCTGCGTGA 58.959 55.000 0.00 0.00 38.02 4.35
68 69 3.595691 GGAGGTATGATCCTGCGTG 57.404 57.895 0.00 0.00 38.02 5.34
74 75 1.545706 GGCGGGAGGAGGTATGATCC 61.546 65.000 0.00 0.00 37.07 3.36
75 76 1.878656 CGGCGGGAGGAGGTATGATC 61.879 65.000 0.00 0.00 0.00 2.92
76 77 1.908793 CGGCGGGAGGAGGTATGAT 60.909 63.158 0.00 0.00 0.00 2.45
77 78 2.520982 CGGCGGGAGGAGGTATGA 60.521 66.667 0.00 0.00 0.00 2.15
78 79 4.301027 GCGGCGGGAGGAGGTATG 62.301 72.222 9.78 0.00 0.00 2.39
79 80 4.853142 TGCGGCGGGAGGAGGTAT 62.853 66.667 9.78 0.00 0.00 2.73
93 94 4.838152 ATAGCGGCCACAGGTGCG 62.838 66.667 2.24 0.00 32.91 5.34
94 95 2.587322 TACATAGCGGCCACAGGTGC 62.587 60.000 2.24 0.00 0.00 5.01
95 96 0.530650 CTACATAGCGGCCACAGGTG 60.531 60.000 2.24 0.00 0.00 4.00
96 97 1.823295 CTACATAGCGGCCACAGGT 59.177 57.895 2.24 0.00 0.00 4.00
97 98 1.595382 GCTACATAGCGGCCACAGG 60.595 63.158 2.24 0.00 39.82 4.00
98 99 4.033894 GCTACATAGCGGCCACAG 57.966 61.111 2.24 0.00 39.82 3.66
107 108 1.964223 ACACGGATGGGAGCTACATAG 59.036 52.381 0.00 1.70 0.00 2.23
108 109 2.082140 ACACGGATGGGAGCTACATA 57.918 50.000 0.00 0.00 0.00 2.29
109 110 1.139058 GAACACGGATGGGAGCTACAT 59.861 52.381 0.00 0.00 0.00 2.29
110 111 0.535335 GAACACGGATGGGAGCTACA 59.465 55.000 0.00 0.00 0.00 2.74
111 112 0.535335 TGAACACGGATGGGAGCTAC 59.465 55.000 0.00 0.00 0.00 3.58
112 113 1.066430 GTTGAACACGGATGGGAGCTA 60.066 52.381 0.00 0.00 0.00 3.32
113 114 0.321653 GTTGAACACGGATGGGAGCT 60.322 55.000 0.00 0.00 0.00 4.09
114 115 0.321653 AGTTGAACACGGATGGGAGC 60.322 55.000 0.00 0.00 0.00 4.70
115 116 2.185004 AAGTTGAACACGGATGGGAG 57.815 50.000 0.00 0.00 0.00 4.30
116 117 3.404899 GTTAAGTTGAACACGGATGGGA 58.595 45.455 0.00 0.00 0.00 4.37
117 118 2.486592 GGTTAAGTTGAACACGGATGGG 59.513 50.000 0.00 0.00 0.00 4.00
118 119 2.486592 GGGTTAAGTTGAACACGGATGG 59.513 50.000 0.00 0.00 0.00 3.51
119 120 3.142951 TGGGTTAAGTTGAACACGGATG 58.857 45.455 0.00 0.00 35.34 3.51
120 121 3.408634 CTGGGTTAAGTTGAACACGGAT 58.591 45.455 0.00 0.00 40.95 4.18
121 122 2.841215 CTGGGTTAAGTTGAACACGGA 58.159 47.619 0.00 0.00 40.95 4.69
122 123 1.265905 GCTGGGTTAAGTTGAACACGG 59.734 52.381 0.00 0.00 41.33 4.94
123 124 1.265905 GGCTGGGTTAAGTTGAACACG 59.734 52.381 0.00 0.00 35.34 4.49
124 125 1.611977 GGGCTGGGTTAAGTTGAACAC 59.388 52.381 0.00 0.00 33.05 3.32
125 126 1.816183 CGGGCTGGGTTAAGTTGAACA 60.816 52.381 0.00 0.00 0.00 3.18
126 127 0.879090 CGGGCTGGGTTAAGTTGAAC 59.121 55.000 0.00 0.00 0.00 3.18
127 128 0.250989 CCGGGCTGGGTTAAGTTGAA 60.251 55.000 3.77 0.00 0.00 2.69
128 129 1.377229 CCGGGCTGGGTTAAGTTGA 59.623 57.895 3.77 0.00 0.00 3.18
129 130 2.340328 GCCGGGCTGGGTTAAGTTG 61.340 63.158 15.62 0.00 38.63 3.16
130 131 2.035155 GCCGGGCTGGGTTAAGTT 59.965 61.111 15.62 0.00 38.63 2.66
171 172 3.894547 AAGTACGGCGCCCAAGGTG 62.895 63.158 23.46 8.22 36.10 4.00
172 173 3.186656 AAAGTACGGCGCCCAAGGT 62.187 57.895 23.46 15.73 0.00 3.50
173 174 2.359478 AAAGTACGGCGCCCAAGG 60.359 61.111 23.46 9.53 0.00 3.61
174 175 1.375523 AGAAAGTACGGCGCCCAAG 60.376 57.895 23.46 9.96 0.00 3.61
175 176 1.669760 CAGAAAGTACGGCGCCCAA 60.670 57.895 23.46 5.96 0.00 4.12
176 177 2.047655 CAGAAAGTACGGCGCCCA 60.048 61.111 23.46 5.97 0.00 5.36
177 178 2.818274 CCAGAAAGTACGGCGCCC 60.818 66.667 23.46 7.02 0.00 6.13
178 179 1.810030 CTCCAGAAAGTACGGCGCC 60.810 63.158 19.07 19.07 0.00 6.53
179 180 2.453638 GCTCCAGAAAGTACGGCGC 61.454 63.158 6.90 0.00 0.00 6.53
180 181 2.158959 CGCTCCAGAAAGTACGGCG 61.159 63.158 4.80 4.80 35.54 6.46
181 182 2.453638 GCGCTCCAGAAAGTACGGC 61.454 63.158 0.00 0.00 0.00 5.68
182 183 2.158959 CGCGCTCCAGAAAGTACGG 61.159 63.158 5.56 0.00 0.00 4.02
183 184 1.443872 ACGCGCTCCAGAAAGTACG 60.444 57.895 5.73 0.00 0.00 3.67
184 185 1.352156 CCACGCGCTCCAGAAAGTAC 61.352 60.000 5.73 0.00 0.00 2.73
185 186 1.080093 CCACGCGCTCCAGAAAGTA 60.080 57.895 5.73 0.00 0.00 2.24
186 187 2.357517 CCACGCGCTCCAGAAAGT 60.358 61.111 5.73 0.00 0.00 2.66
187 188 2.357517 ACCACGCGCTCCAGAAAG 60.358 61.111 5.73 0.00 0.00 2.62
188 189 2.664851 CACCACGCGCTCCAGAAA 60.665 61.111 5.73 0.00 0.00 2.52
189 190 4.680237 CCACCACGCGCTCCAGAA 62.680 66.667 5.73 0.00 0.00 3.02
193 194 4.980805 TTCACCACCACGCGCTCC 62.981 66.667 5.73 0.00 0.00 4.70
194 195 3.414700 CTTCACCACCACGCGCTC 61.415 66.667 5.73 0.00 0.00 5.03
195 196 4.988598 CCTTCACCACCACGCGCT 62.989 66.667 5.73 0.00 0.00 5.92
198 199 3.357079 CTGCCTTCACCACCACGC 61.357 66.667 0.00 0.00 0.00 5.34
199 200 2.669569 CCTGCCTTCACCACCACG 60.670 66.667 0.00 0.00 0.00 4.94
200 201 1.600916 GTCCTGCCTTCACCACCAC 60.601 63.158 0.00 0.00 0.00 4.16
201 202 2.829384 GGTCCTGCCTTCACCACCA 61.829 63.158 0.00 0.00 0.00 4.17
202 203 2.034221 GGTCCTGCCTTCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
203 204 2.836154 TGGTCCTGCCTTCACCAC 59.164 61.111 0.00 0.00 35.16 4.16
204 205 2.829384 GGTGGTCCTGCCTTCACCA 61.829 63.158 6.48 0.00 46.39 4.17
205 206 2.034221 GGTGGTCCTGCCTTCACC 59.966 66.667 0.00 0.00 42.11 4.02
206 207 0.678048 GATGGTGGTCCTGCCTTCAC 60.678 60.000 11.44 0.00 38.35 3.18
207 208 0.842030 AGATGGTGGTCCTGCCTTCA 60.842 55.000 15.88 0.00 38.35 3.02
208 209 0.329596 AAGATGGTGGTCCTGCCTTC 59.670 55.000 9.45 9.45 38.35 3.46
209 210 0.329596 GAAGATGGTGGTCCTGCCTT 59.670 55.000 4.98 0.00 38.35 4.35
210 211 1.566298 GGAAGATGGTGGTCCTGCCT 61.566 60.000 4.98 0.00 38.35 4.75
211 212 1.077429 GGAAGATGGTGGTCCTGCC 60.077 63.158 0.00 0.00 37.90 4.85
212 213 1.077429 GGGAAGATGGTGGTCCTGC 60.077 63.158 0.00 0.00 34.23 4.85
213 214 0.995024 AAGGGAAGATGGTGGTCCTG 59.005 55.000 0.00 0.00 34.23 3.86
214 215 1.636003 GAAAGGGAAGATGGTGGTCCT 59.364 52.381 0.00 0.00 34.23 3.85
215 216 1.636003 AGAAAGGGAAGATGGTGGTCC 59.364 52.381 0.00 0.00 0.00 4.46
216 217 2.573915 AGAGAAAGGGAAGATGGTGGTC 59.426 50.000 0.00 0.00 0.00 4.02
217 218 2.637165 AGAGAAAGGGAAGATGGTGGT 58.363 47.619 0.00 0.00 0.00 4.16
218 219 3.135530 CCTAGAGAAAGGGAAGATGGTGG 59.864 52.174 0.00 0.00 32.55 4.61
219 220 3.777522 ACCTAGAGAAAGGGAAGATGGTG 59.222 47.826 0.00 0.00 41.32 4.17
220 221 4.081695 ACCTAGAGAAAGGGAAGATGGT 57.918 45.455 0.00 0.00 41.32 3.55
221 222 5.163290 GGTAACCTAGAGAAAGGGAAGATGG 60.163 48.000 0.00 0.00 41.32 3.51
222 223 5.425539 TGGTAACCTAGAGAAAGGGAAGATG 59.574 44.000 0.00 0.00 41.32 2.90
223 224 5.600749 TGGTAACCTAGAGAAAGGGAAGAT 58.399 41.667 0.00 0.00 41.32 2.40
224 225 5.019657 TGGTAACCTAGAGAAAGGGAAGA 57.980 43.478 0.00 0.00 41.32 2.87
225 226 5.425539 TGATGGTAACCTAGAGAAAGGGAAG 59.574 44.000 0.00 0.00 41.32 3.46
226 227 5.347124 TGATGGTAACCTAGAGAAAGGGAA 58.653 41.667 0.00 0.00 41.32 3.97
227 228 4.955335 TGATGGTAACCTAGAGAAAGGGA 58.045 43.478 0.00 0.00 41.32 4.20
228 229 4.101741 CCTGATGGTAACCTAGAGAAAGGG 59.898 50.000 0.00 0.00 41.32 3.95
229 230 4.962995 TCCTGATGGTAACCTAGAGAAAGG 59.037 45.833 0.00 0.00 37.36 3.11
230 231 6.098982 ACATCCTGATGGTAACCTAGAGAAAG 59.901 42.308 11.56 0.00 42.91 2.62
231 232 5.964477 ACATCCTGATGGTAACCTAGAGAAA 59.036 40.000 11.56 0.00 42.91 2.52
232 233 5.529289 ACATCCTGATGGTAACCTAGAGAA 58.471 41.667 11.56 0.00 42.91 2.87
233 234 5.144159 ACATCCTGATGGTAACCTAGAGA 57.856 43.478 11.56 0.00 42.91 3.10
234 235 5.605534 CAACATCCTGATGGTAACCTAGAG 58.394 45.833 11.56 0.00 42.91 2.43
235 236 4.141711 GCAACATCCTGATGGTAACCTAGA 60.142 45.833 11.56 0.00 42.91 2.43
236 237 4.130118 GCAACATCCTGATGGTAACCTAG 58.870 47.826 11.56 0.00 42.91 3.02
237 238 3.780294 AGCAACATCCTGATGGTAACCTA 59.220 43.478 11.56 0.00 42.91 3.08
238 239 2.578021 AGCAACATCCTGATGGTAACCT 59.422 45.455 11.56 0.34 42.91 3.50
239 240 3.004752 AGCAACATCCTGATGGTAACC 57.995 47.619 11.56 0.00 42.91 2.85
240 241 6.498304 CATAAAGCAACATCCTGATGGTAAC 58.502 40.000 11.56 1.38 42.91 2.50
241 242 5.067674 GCATAAAGCAACATCCTGATGGTAA 59.932 40.000 11.56 0.00 44.79 2.85
242 243 4.580167 GCATAAAGCAACATCCTGATGGTA 59.420 41.667 11.56 0.00 44.79 3.25
243 244 3.382546 GCATAAAGCAACATCCTGATGGT 59.617 43.478 11.56 1.77 44.79 3.55
244 245 3.973657 GCATAAAGCAACATCCTGATGG 58.026 45.455 11.56 0.00 44.79 3.51
257 258 4.154737 TCAACTCACTCATGTGCATAAAGC 59.845 41.667 0.00 0.00 43.49 3.51
258 259 5.868043 TCAACTCACTCATGTGCATAAAG 57.132 39.130 0.00 0.00 43.49 1.85
259 260 5.706833 ACATCAACTCACTCATGTGCATAAA 59.293 36.000 0.00 0.00 43.49 1.40
260 261 5.247862 ACATCAACTCACTCATGTGCATAA 58.752 37.500 0.00 0.00 43.49 1.90
261 262 4.835678 ACATCAACTCACTCATGTGCATA 58.164 39.130 0.00 0.00 43.49 3.14
262 263 3.682696 ACATCAACTCACTCATGTGCAT 58.317 40.909 0.00 0.00 43.49 3.96
263 264 3.130280 ACATCAACTCACTCATGTGCA 57.870 42.857 0.00 0.00 43.49 4.57
264 265 4.272018 GGATACATCAACTCACTCATGTGC 59.728 45.833 0.00 0.00 43.49 4.57
265 266 5.522824 CAGGATACATCAACTCACTCATGTG 59.477 44.000 0.00 0.00 42.26 3.21
266 267 5.423290 TCAGGATACATCAACTCACTCATGT 59.577 40.000 0.00 0.00 41.41 3.21
267 268 5.910614 TCAGGATACATCAACTCACTCATG 58.089 41.667 0.00 0.00 41.41 3.07
268 269 6.550938 TTCAGGATACATCAACTCACTCAT 57.449 37.500 0.00 0.00 41.41 2.90
269 270 6.358974 TTTCAGGATACATCAACTCACTCA 57.641 37.500 0.00 0.00 41.41 3.41
270 271 6.238320 GCATTTCAGGATACATCAACTCACTC 60.238 42.308 0.00 0.00 41.41 3.51
271 272 5.587844 GCATTTCAGGATACATCAACTCACT 59.412 40.000 0.00 0.00 41.41 3.41
272 273 5.355071 TGCATTTCAGGATACATCAACTCAC 59.645 40.000 0.00 0.00 41.41 3.51
273 274 5.499313 TGCATTTCAGGATACATCAACTCA 58.501 37.500 0.00 0.00 41.41 3.41
274 275 6.441093 TTGCATTTCAGGATACATCAACTC 57.559 37.500 0.00 0.00 41.41 3.01
275 276 7.414222 AATTGCATTTCAGGATACATCAACT 57.586 32.000 0.00 0.00 41.41 3.16
276 277 8.483307 AAAATTGCATTTCAGGATACATCAAC 57.517 30.769 0.00 0.00 41.41 3.18
307 308 5.046950 TCTGGAAAAGTAAGGCTCTCTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
536 537 6.500684 TCAAAATCTATGTTTCTCTGCCAC 57.499 37.500 0.00 0.00 0.00 5.01
552 553 2.552315 TCCCAAGTCGCTGTTCAAAATC 59.448 45.455 0.00 0.00 0.00 2.17
557 558 1.301716 GCTCCCAAGTCGCTGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
558 559 2.383527 CGCTCCCAAGTCGCTGTTC 61.384 63.158 0.00 0.00 0.00 3.18
566 567 2.749044 CATGCAGCGCTCCCAAGT 60.749 61.111 7.13 0.00 0.00 3.16
576 577 2.125391 TGACTCGAGGCATGCAGC 60.125 61.111 19.45 9.54 44.65 5.25
594 595 2.101582 CAGGAGGAAGTCTATTGGACCG 59.898 54.545 0.00 0.00 45.54 4.79
628 629 2.576191 AGGAGCATAACTAGGTTTGGCA 59.424 45.455 0.19 0.00 0.00 4.92
718 720 5.506317 CGGCCATCCAGTGAAAATAAGATTC 60.506 44.000 2.24 0.00 0.00 2.52
808 810 1.597854 CCACAAGAGCAACGGCAGA 60.598 57.895 0.00 0.00 44.61 4.26
832 834 2.583143 GTTTGTTCAGGCAAGGTAGGT 58.417 47.619 0.00 0.00 0.00 3.08
836 838 1.859302 TTGGTTTGTTCAGGCAAGGT 58.141 45.000 0.00 0.00 0.00 3.50
927 931 6.038603 CAGTCAAAAGACCACAGAAAGAATCA 59.961 38.462 0.00 0.00 0.00 2.57
1212 1299 5.301551 CAGTAGATGCCAAGATGAGTAGTCT 59.698 44.000 0.00 0.00 0.00 3.24
1223 1310 5.957842 TTTTACAACCAGTAGATGCCAAG 57.042 39.130 0.00 0.00 33.43 3.61
1230 1317 7.148086 GGCATTCATCATTTTACAACCAGTAGA 60.148 37.037 0.00 0.00 33.43 2.59
1231 1318 6.974622 GGCATTCATCATTTTACAACCAGTAG 59.025 38.462 0.00 0.00 33.43 2.57
1317 1404 2.734276 AGGTGACGAGCTTCTTCTTC 57.266 50.000 0.00 0.00 0.00 2.87
1587 1687 3.109044 AGCATGACTAGCTAGCATGTG 57.891 47.619 33.83 23.83 41.32 3.21
1656 1761 9.303537 GTTTTATCTACTGATCTAAACGCTCTT 57.696 33.333 0.00 0.00 32.71 2.85
1677 1782 9.816354 ACTAAAGTAGTGACCTAAAACGTTTTA 57.184 29.630 26.99 26.99 37.69 1.52
1713 1818 9.710818 ATACTCCCTCTGTAAACTAATAAGACA 57.289 33.333 0.00 0.00 0.00 3.41
1728 1833 5.344743 TTGCTTCTTACATACTCCCTCTG 57.655 43.478 0.00 0.00 0.00 3.35
2091 2201 3.889815 TCCAGCTTTCCATTCCATGTAG 58.110 45.455 0.00 0.00 0.00 2.74
2117 2227 1.134580 AGACCAACAGATGATGCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
2128 2238 6.867662 ATTTACTTGAACTGAGACCAACAG 57.132 37.500 0.00 0.00 40.68 3.16
2191 2305 2.898729 TAATCCAGCAGTAGCAGAGC 57.101 50.000 0.00 0.00 45.49 4.09
2274 2388 6.345569 GCGTCGTTTTCTAGAATATACTTGC 58.654 40.000 5.89 2.50 0.00 4.01
2277 2391 6.140303 TGGCGTCGTTTTCTAGAATATACT 57.860 37.500 5.89 0.00 0.00 2.12
2278 2392 5.107951 GCTGGCGTCGTTTTCTAGAATATAC 60.108 44.000 5.89 4.64 0.00 1.47
2279 2393 4.980434 GCTGGCGTCGTTTTCTAGAATATA 59.020 41.667 5.89 0.00 0.00 0.86
2280 2394 3.802685 GCTGGCGTCGTTTTCTAGAATAT 59.197 43.478 5.89 0.00 0.00 1.28
2281 2395 3.184541 GCTGGCGTCGTTTTCTAGAATA 58.815 45.455 5.89 0.00 0.00 1.75
2282 2396 2.000447 GCTGGCGTCGTTTTCTAGAAT 59.000 47.619 5.89 0.00 0.00 2.40
2283 2397 1.425412 GCTGGCGTCGTTTTCTAGAA 58.575 50.000 0.00 0.00 0.00 2.10
2284 2398 0.731514 CGCTGGCGTCGTTTTCTAGA 60.732 55.000 6.83 0.00 34.35 2.43
2285 2399 1.702299 CGCTGGCGTCGTTTTCTAG 59.298 57.895 6.83 0.00 34.35 2.43
2286 2400 2.377310 GCGCTGGCGTCGTTTTCTA 61.377 57.895 16.21 0.00 42.09 2.10
2287 2401 3.712881 GCGCTGGCGTCGTTTTCT 61.713 61.111 16.21 0.00 42.09 2.52
2288 2402 3.631049 GAGCGCTGGCGTCGTTTTC 62.631 63.158 18.48 0.00 46.35 2.29
2289 2403 3.712881 GAGCGCTGGCGTCGTTTT 61.713 61.111 18.48 0.00 46.35 2.43
2333 2447 2.439701 GGCTAGGTTTTCGCCCCC 60.440 66.667 0.00 0.00 37.86 5.40
2334 2448 2.822701 CGGCTAGGTTTTCGCCCC 60.823 66.667 0.00 0.00 40.70 5.80
2335 2449 3.506096 GCGGCTAGGTTTTCGCCC 61.506 66.667 0.00 0.00 42.02 6.13
2337 2451 3.861263 CGGCGGCTAGGTTTTCGC 61.861 66.667 7.61 0.00 46.35 4.70
2338 2452 3.861263 GCGGCGGCTAGGTTTTCG 61.861 66.667 9.78 0.00 35.83 3.46
2339 2453 3.506096 GGCGGCGGCTAGGTTTTC 61.506 66.667 27.22 0.00 39.81 2.29
2340 2454 4.338710 TGGCGGCGGCTAGGTTTT 62.339 61.111 33.21 0.00 39.81 2.43
2341 2455 4.778143 CTGGCGGCGGCTAGGTTT 62.778 66.667 33.21 0.00 43.43 3.27
2359 2473 4.552365 ATGGCCGGTGGATCTGCG 62.552 66.667 1.90 0.00 0.00 5.18
2360 2474 2.592861 GATGGCCGGTGGATCTGC 60.593 66.667 1.90 0.00 0.00 4.26
2361 2475 0.533755 GAAGATGGCCGGTGGATCTG 60.534 60.000 1.90 0.00 0.00 2.90
2362 2476 1.700042 GGAAGATGGCCGGTGGATCT 61.700 60.000 1.90 4.70 0.00 2.75
2363 2477 1.227973 GGAAGATGGCCGGTGGATC 60.228 63.158 1.90 2.14 0.00 3.36
2364 2478 2.757124 GGGAAGATGGCCGGTGGAT 61.757 63.158 1.90 0.00 0.00 3.41
2365 2479 3.407967 GGGAAGATGGCCGGTGGA 61.408 66.667 1.90 0.00 0.00 4.02
2366 2480 4.506255 GGGGAAGATGGCCGGTGG 62.506 72.222 1.90 0.00 0.00 4.61
2367 2481 3.406595 GAGGGGAAGATGGCCGGTG 62.407 68.421 1.90 0.00 0.00 4.94
2368 2482 3.090532 GAGGGGAAGATGGCCGGT 61.091 66.667 1.90 0.00 0.00 5.28
2369 2483 4.241555 CGAGGGGAAGATGGCCGG 62.242 72.222 0.00 0.00 0.00 6.13
2370 2484 4.918201 GCGAGGGGAAGATGGCCG 62.918 72.222 0.00 0.00 0.00 6.13
2371 2485 4.570874 GGCGAGGGGAAGATGGCC 62.571 72.222 0.00 0.00 32.98 5.36
2372 2486 4.918201 CGGCGAGGGGAAGATGGC 62.918 72.222 0.00 0.00 0.00 4.40
2373 2487 4.918201 GCGGCGAGGGGAAGATGG 62.918 72.222 12.98 0.00 0.00 3.51
2374 2488 4.918201 GGCGGCGAGGGGAAGATG 62.918 72.222 12.98 0.00 0.00 2.90
2435 2549 4.475135 GAGGAGGAAGTGCCCCGC 62.475 72.222 0.00 0.00 37.37 6.13
2436 2550 3.787001 GGAGGAGGAAGTGCCCCG 61.787 72.222 0.00 0.00 37.37 5.73
2437 2551 3.412408 GGGAGGAGGAAGTGCCCC 61.412 72.222 0.00 0.00 37.37 5.80
2438 2552 3.787001 CGGGAGGAGGAAGTGCCC 61.787 72.222 0.00 0.00 37.37 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.