Multiple sequence alignment - TraesCS6D01G098200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G098200
chr6D
100.000
3364
0
0
1
3364
61790663
61794026
0.000000e+00
6213.0
1
TraesCS6D01G098200
chr6D
100.000
263
0
0
3563
3825
61794225
61794487
1.600000e-133
486.0
2
TraesCS6D01G098200
chr6A
94.753
3221
145
14
159
3364
79086292
79089503
0.000000e+00
4990.0
3
TraesCS6D01G098200
chr6A
93.985
133
7
1
3563
3694
79089587
79089719
2.330000e-47
200.0
4
TraesCS6D01G098200
chr6A
90.441
136
13
0
3689
3824
79097261
79097396
3.040000e-41
180.0
5
TraesCS6D01G098200
chr6A
92.241
116
6
3
31
144
79086123
79086237
1.100000e-35
161.0
6
TraesCS6D01G098200
chr6B
91.328
3125
199
41
31
3111
135707072
135710168
0.000000e+00
4204.0
7
TraesCS6D01G098200
chr6B
92.776
263
19
0
3102
3364
135710193
135710455
7.750000e-102
381.0
8
TraesCS6D01G098200
chr6B
91.729
266
18
3
3563
3825
135710694
135710958
2.170000e-97
366.0
9
TraesCS6D01G098200
chr6B
89.510
143
14
1
3223
3364
135710466
135710608
3.040000e-41
180.0
10
TraesCS6D01G098200
chr7B
88.000
125
13
2
2767
2891
443343625
443343503
3.080000e-31
147.0
11
TraesCS6D01G098200
chr7A
86.567
134
16
2
2758
2891
507173692
507173823
3.080000e-31
147.0
12
TraesCS6D01G098200
chr7D
87.200
125
14
2
2767
2891
426152568
426152446
1.430000e-29
141.0
13
TraesCS6D01G098200
chr7D
85.185
54
6
1
3608
3659
565186207
565186260
2.000000e-03
54.7
14
TraesCS6D01G098200
chr2D
97.917
48
1
0
3580
3627
551437882
551437929
2.450000e-12
84.2
15
TraesCS6D01G098200
chr1A
95.918
49
2
0
3093
3141
478551296
478551344
3.170000e-11
80.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G098200
chr6D
61790663
61794487
3824
False
3349.500000
6213
100.000000
1
3825
2
chr6D.!!$F1
3824
1
TraesCS6D01G098200
chr6A
79086123
79089719
3596
False
1783.666667
4990
93.659667
31
3694
3
chr6A.!!$F2
3663
2
TraesCS6D01G098200
chr6B
135707072
135710958
3886
False
1282.750000
4204
91.335750
31
3825
4
chr6B.!!$F1
3794
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
27
28
0.108329
GATCGGAAGTTTCTCCCGCA
60.108
55.0
0.0
0.0
42.70
5.69
F
28
29
0.323629
ATCGGAAGTTTCTCCCGCAA
59.676
50.0
0.0
0.0
42.70
4.85
F
905
955
0.543749
CCCTTTCCTACTCCTGCCTG
59.456
60.0
0.0
0.0
0.00
4.85
F
1537
1607
0.848735
TAGGAGCGACCCCTAAGCTA
59.151
55.0
0.0
0.0
41.84
3.32
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1103
1155
0.322816
GCCTTCATTGAGGTCCAGCA
60.323
55.0
0.00
0.00
39.11
4.41
R
1970
2057
0.463833
CGGCTATTGGTGTTCCCTCC
60.464
60.0
0.00
0.00
0.00
4.30
R
2019
2106
0.471191
AGATTGCATCGGAGATGGCA
59.529
50.0
11.41
7.39
45.12
4.92
R
3082
3181
0.610232
CTCAAAAGGACTGGCCCTGG
60.610
60.0
0.00
0.00
36.49
4.45
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
24
25
5.277857
TGAATAGATCGGAAGTTTCTCCC
57.722
43.478
0.00
0.00
31.03
4.30
25
26
4.202121
TGAATAGATCGGAAGTTTCTCCCG
60.202
45.833
0.00
0.00
44.22
5.14
26
27
0.175989
AGATCGGAAGTTTCTCCCGC
59.824
55.000
0.00
0.00
42.70
6.13
27
28
0.108329
GATCGGAAGTTTCTCCCGCA
60.108
55.000
0.00
0.00
42.70
5.69
28
29
0.323629
ATCGGAAGTTTCTCCCGCAA
59.676
50.000
0.00
0.00
42.70
4.85
29
30
0.601841
TCGGAAGTTTCTCCCGCAAC
60.602
55.000
0.00
0.00
42.70
4.17
103
105
1.808945
GATTCGGATGGGCATGACATC
59.191
52.381
17.65
17.65
43.04
3.06
243
290
2.726821
TCTGCCCCTTTTAGCTCATTG
58.273
47.619
0.00
0.00
0.00
2.82
256
303
7.643569
TTTAGCTCATTGATCAAATAGCCAA
57.356
32.000
28.33
22.61
30.99
4.52
368
415
4.037222
AGTGTCCCAACCCAAAAGAAAAT
58.963
39.130
0.00
0.00
0.00
1.82
372
419
5.071115
TGTCCCAACCCAAAAGAAAATTAGG
59.929
40.000
0.00
0.00
0.00
2.69
657
706
6.407074
GCCTACATATATAGCTACCAACCAGG
60.407
46.154
0.00
0.00
45.67
4.45
659
708
4.844085
ACATATATAGCTACCAACCAGGCA
59.156
41.667
0.00
0.00
43.14
4.75
682
731
1.186200
GGAAAGGGTCCAGAATTGCC
58.814
55.000
0.00
0.00
46.97
4.52
690
739
2.170166
GTCCAGAATTGCCCACATCAA
58.830
47.619
0.00
0.00
0.00
2.57
691
740
2.562298
GTCCAGAATTGCCCACATCAAA
59.438
45.455
0.00
0.00
0.00
2.69
694
743
2.933906
CAGAATTGCCCACATCAAATGC
59.066
45.455
0.00
0.00
0.00
3.56
697
746
1.630223
TTGCCCACATCAAATGCTGA
58.370
45.000
0.00
0.00
38.81
4.26
698
747
1.630223
TGCCCACATCAAATGCTGAA
58.370
45.000
0.00
0.00
37.67
3.02
711
760
6.446318
TCAAATGCTGAATGGTAAACTGTTC
58.554
36.000
0.00
0.00
0.00
3.18
712
761
6.265196
TCAAATGCTGAATGGTAAACTGTTCT
59.735
34.615
0.00
0.00
0.00
3.01
714
763
6.992063
ATGCTGAATGGTAAACTGTTCTAG
57.008
37.500
0.00
0.00
0.00
2.43
720
769
4.267349
TGGTAAACTGTTCTAGACCAGC
57.733
45.455
16.56
1.11
33.18
4.85
798
848
4.786425
AGATTGTTTATGCTTCCTCTCCC
58.214
43.478
0.00
0.00
0.00
4.30
905
955
0.543749
CCCTTTCCTACTCCTGCCTG
59.456
60.000
0.00
0.00
0.00
4.85
1126
1178
1.064463
TGGACCTCAATGAAGGCATCC
60.064
52.381
0.00
0.00
40.34
3.51
1424
1486
9.122613
GAACTTTCTCATAACTTGATTTCTTGC
57.877
33.333
0.00
0.00
32.72
4.01
1441
1507
1.518325
TGCGATGATCGGTTGTTTGT
58.482
45.000
17.27
0.00
40.84
2.83
1456
1522
6.309494
CGGTTGTTTGTTCGTGAGATTCTATA
59.691
38.462
0.00
0.00
41.60
1.31
1492
1562
9.734620
TTTGTTTCACTGAATCTGATTAGTTTG
57.265
29.630
2.28
0.00
0.00
2.93
1494
1564
6.500684
TTCACTGAATCTGATTAGTTTGCC
57.499
37.500
2.28
0.00
0.00
4.52
1500
1570
5.774690
TGAATCTGATTAGTTTGCCACCTTT
59.225
36.000
2.28
0.00
0.00
3.11
1504
1574
6.480763
TCTGATTAGTTTGCCACCTTTGATA
58.519
36.000
0.00
0.00
0.00
2.15
1512
1582
6.041979
AGTTTGCCACCTTTGATATCTTGTTT
59.958
34.615
3.98
0.00
0.00
2.83
1513
1583
5.389859
TGCCACCTTTGATATCTTGTTTG
57.610
39.130
3.98
0.00
0.00
2.93
1514
1584
4.832266
TGCCACCTTTGATATCTTGTTTGT
59.168
37.500
3.98
0.00
0.00
2.83
1525
1595
9.639601
TTGATATCTTGTTTGTATATAGGAGCG
57.360
33.333
3.98
0.00
0.00
5.03
1528
1598
5.839621
TCTTGTTTGTATATAGGAGCGACC
58.160
41.667
0.00
0.00
39.35
4.79
1537
1607
0.848735
TAGGAGCGACCCCTAAGCTA
59.151
55.000
0.00
0.00
41.84
3.32
1612
1682
4.729227
TCTGCAGGTAAATCATGTCGTA
57.271
40.909
15.13
0.00
0.00
3.43
1622
1692
8.450964
AGGTAAATCATGTCGTACAAAATTCAG
58.549
33.333
0.00
0.00
0.00
3.02
1655
1736
3.211865
ACTTCGCATATCACTCTCGGTA
58.788
45.455
0.00
0.00
0.00
4.02
1705
1786
2.409948
GCAAGAAGCTAGACCACCAT
57.590
50.000
0.00
0.00
41.15
3.55
1945
2029
2.435059
GAGCGCGGAGGCTTCTTT
60.435
61.111
8.83
0.00
44.93
2.52
2014
2101
2.514458
ATGGGATTCTCCAACACCAC
57.486
50.000
0.00
0.00
40.62
4.16
2019
2106
1.073923
GATTCTCCAACACCACCACCT
59.926
52.381
0.00
0.00
0.00
4.00
2053
2140
2.426522
CAATCTGGCTTCAAGAACGGA
58.573
47.619
0.00
0.00
0.00
4.69
2099
2187
5.161943
AGACGTTAAACCTAGCCATTCTT
57.838
39.130
0.00
0.00
0.00
2.52
2177
2265
4.054825
GGGCGTTCGACCACCGTA
62.055
66.667
12.54
0.00
39.75
4.02
2213
2301
1.144936
GATGTGAAGGCCTCCTCGG
59.855
63.158
5.23
0.00
30.89
4.63
2242
2330
1.514443
CTTCTTCGCGTCCTCGTCC
60.514
63.158
5.77
0.00
39.49
4.79
2245
2333
4.394078
TTCGCGTCCTCGTCCGTG
62.394
66.667
5.77
0.00
39.49
4.94
2262
2350
0.919710
GTGAGGAGGTGGCCCTTAAT
59.080
55.000
0.00
0.00
42.86
1.40
2269
2357
1.887707
GTGGCCCTTAATCTCCGCG
60.888
63.158
0.00
0.00
0.00
6.46
2314
2402
3.118629
TGCGAGATGAGAGCTTTGGTTAT
60.119
43.478
0.00
0.00
0.00
1.89
2388
2482
1.379977
TCGTGCCAGGAGGAGGTAG
60.380
63.158
0.00
0.00
36.89
3.18
2642
2736
1.999024
GCAAGAAGAGGAAGAAGAGCG
59.001
52.381
0.00
0.00
0.00
5.03
2748
2842
4.772678
GCAGGGGCAGGAAAAGAT
57.227
55.556
0.00
0.00
40.72
2.40
2835
2929
4.142513
GGCATTGGAGTGAGATCTTTCAAC
60.143
45.833
0.00
0.00
0.00
3.18
2992
3091
1.102222
ACAGCCTCTCGATCGGTACC
61.102
60.000
16.41
0.16
0.00
3.34
3048
3147
6.667414
TGTGACAATATTTTTGGGAGGCTAAT
59.333
34.615
0.00
0.00
0.00
1.73
3081
3180
6.765036
AGAGACAAGTATCCATTATTGCAGTG
59.235
38.462
0.00
0.00
0.00
3.66
3082
3181
5.297776
AGACAAGTATCCATTATTGCAGTGC
59.702
40.000
8.58
8.58
0.00
4.40
3100
3199
1.460255
CCAGGGCCAGTCCTTTTGA
59.540
57.895
6.18
0.00
34.31
2.69
3107
3206
1.813178
GCCAGTCCTTTTGAGGCTTAC
59.187
52.381
0.00
0.00
42.01
2.34
3270
3403
6.493115
TGAAATCTTAATCTTGAGGGTTTGCA
59.507
34.615
0.00
0.00
0.00
4.08
3276
3409
0.878523
CTTGAGGGTTTGCACGACGA
60.879
55.000
0.00
0.00
0.00
4.20
3630
3804
1.910580
CGGTGATGTTAGGGGGCAGT
61.911
60.000
0.00
0.00
0.00
4.40
3659
3833
1.866483
TACCCCTGTCTCCGCCACTA
61.866
60.000
0.00
0.00
0.00
2.74
3705
3879
6.473778
CCACGCATCTATATACTACAATGAGC
59.526
42.308
0.00
0.00
0.00
4.26
3727
3901
5.130975
AGCATCACATATAGTTTCAGTGGGA
59.869
40.000
0.00
0.00
0.00
4.37
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
6.994221
GGGAGAAACTTCCGATCTATTCATA
58.006
40.000
0.00
0.00
38.17
2.15
1
2
5.859495
GGGAGAAACTTCCGATCTATTCAT
58.141
41.667
0.00
0.00
38.17
2.57
2
3
5.277857
GGGAGAAACTTCCGATCTATTCA
57.722
43.478
0.00
0.00
38.17
2.57
44
45
7.846644
TTATTTGATGGCATCATGGAAAAAC
57.153
32.000
29.22
0.00
39.39
2.43
89
91
3.129287
AGAAAAACGATGTCATGCCCATC
59.871
43.478
12.62
12.62
36.25
3.51
153
200
8.114102
TGTATTTATTACACCCCAAACCACATA
58.886
33.333
0.00
0.00
35.86
2.29
155
202
6.312529
TGTATTTATTACACCCCAAACCACA
58.687
36.000
0.00
0.00
35.86
4.17
156
203
6.837471
TGTATTTATTACACCCCAAACCAC
57.163
37.500
0.00
0.00
35.86
4.16
157
204
6.381420
CCATGTATTTATTACACCCCAAACCA
59.619
38.462
0.00
0.00
43.46
3.67
243
290
4.440663
GGCTCTTTGGTTGGCTATTTGATC
60.441
45.833
0.00
0.00
0.00
2.92
256
303
4.351054
CTGCCCCGGCTCTTTGGT
62.351
66.667
7.35
0.00
42.51
3.67
657
706
0.110486
TCTGGACCCTTTCCTTGTGC
59.890
55.000
0.00
0.00
46.10
4.57
659
708
3.500343
CAATTCTGGACCCTTTCCTTGT
58.500
45.455
0.00
0.00
46.10
3.16
678
727
1.630223
TCAGCATTTGATGTGGGCAA
58.370
45.000
0.00
0.00
32.47
4.52
680
729
2.546778
CATTCAGCATTTGATGTGGGC
58.453
47.619
0.00
0.00
35.27
5.36
681
730
2.498481
ACCATTCAGCATTTGATGTGGG
59.502
45.455
9.42
6.18
42.15
4.61
682
731
3.880047
ACCATTCAGCATTTGATGTGG
57.120
42.857
4.46
4.46
42.89
4.17
690
739
7.119846
GTCTAGAACAGTTTACCATTCAGCATT
59.880
37.037
0.00
0.00
0.00
3.56
691
740
6.595716
GTCTAGAACAGTTTACCATTCAGCAT
59.404
38.462
0.00
0.00
0.00
3.79
694
743
6.464222
TGGTCTAGAACAGTTTACCATTCAG
58.536
40.000
6.32
0.00
32.24
3.02
711
760
3.197766
TCCTTGTACATTGGCTGGTCTAG
59.802
47.826
0.00
0.00
0.00
2.43
712
761
3.178046
TCCTTGTACATTGGCTGGTCTA
58.822
45.455
0.00
0.00
0.00
2.59
714
763
2.027192
TCTCCTTGTACATTGGCTGGTC
60.027
50.000
0.00
0.00
0.00
4.02
720
769
3.379372
CAGGCATTCTCCTTGTACATTGG
59.621
47.826
0.00
2.51
33.25
3.16
798
848
0.180171
TGAACCACTGGTGTGTGAGG
59.820
55.000
0.00
0.00
42.34
3.86
905
955
1.134699
TGGACTGGATCAGAATCGTGC
60.135
52.381
1.59
0.00
35.18
5.34
1103
1155
0.322816
GCCTTCATTGAGGTCCAGCA
60.323
55.000
0.00
0.00
39.11
4.41
1126
1178
3.446516
TCTCCATCATCGCTCTCCATATG
59.553
47.826
0.00
0.00
0.00
1.78
1424
1486
2.156891
ACGAACAAACAACCGATCATCG
59.843
45.455
0.00
0.00
40.07
3.84
1456
1522
9.991906
AGATTCAGTGAAACAAATCATGAAATT
57.008
25.926
10.14
0.00
41.15
1.82
1459
1525
8.168790
TCAGATTCAGTGAAACAAATCATGAA
57.831
30.769
10.14
0.00
41.15
2.57
1488
1558
5.391312
ACAAGATATCAAAGGTGGCAAAC
57.609
39.130
5.32
0.00
0.00
2.93
1492
1562
5.391312
ACAAACAAGATATCAAAGGTGGC
57.609
39.130
5.32
0.00
0.00
5.01
1500
1570
9.020731
TCGCTCCTATATACAAACAAGATATCA
57.979
33.333
5.32
0.00
0.00
2.15
1504
1574
6.456501
GGTCGCTCCTATATACAAACAAGAT
58.543
40.000
0.00
0.00
0.00
2.40
1512
1582
4.597004
CTTAGGGGTCGCTCCTATATACA
58.403
47.826
6.35
0.00
36.81
2.29
1513
1583
3.380954
GCTTAGGGGTCGCTCCTATATAC
59.619
52.174
6.35
0.00
36.81
1.47
1514
1584
3.268856
AGCTTAGGGGTCGCTCCTATATA
59.731
47.826
6.35
0.00
36.81
0.86
1537
1607
5.821470
CCTAACATTCATCATCTGAAGCACT
59.179
40.000
0.00
0.00
46.71
4.40
1612
1682
7.492352
AGTAAGCGAACTAACTGAATTTTGT
57.508
32.000
0.00
0.00
0.00
2.83
1622
1692
5.457799
TGATATGCGAAGTAAGCGAACTAAC
59.542
40.000
0.00
0.00
37.44
2.34
1705
1786
1.229368
TCCCCTGATCCGTTGACCA
60.229
57.895
0.00
0.00
0.00
4.02
1729
1810
3.200825
GGGATTGATGAGAACCTGAGGAA
59.799
47.826
4.99
0.00
0.00
3.36
1936
2020
1.961277
CCGCGACACAAAGAAGCCT
60.961
57.895
8.23
0.00
0.00
4.58
1970
2057
0.463833
CGGCTATTGGTGTTCCCTCC
60.464
60.000
0.00
0.00
0.00
4.30
1971
2058
1.095807
GCGGCTATTGGTGTTCCCTC
61.096
60.000
0.00
0.00
0.00
4.30
1972
2059
1.077716
GCGGCTATTGGTGTTCCCT
60.078
57.895
0.00
0.00
0.00
4.20
2014
2101
1.227764
CATCGGAGATGGCAGGTGG
60.228
63.158
0.00
0.00
45.12
4.61
2019
2106
0.471191
AGATTGCATCGGAGATGGCA
59.529
50.000
11.41
7.39
45.12
4.92
2069
2156
6.548622
TGGCTAGGTTTAACGTCTAGTGATAT
59.451
38.462
9.27
0.00
34.55
1.63
2133
2221
3.200483
TGATTCCTGCAGATGTTCATCG
58.800
45.455
17.39
0.00
0.00
3.84
2177
2265
2.832643
TCATTCCTGGCCATCATGTT
57.167
45.000
5.51
0.00
0.00
2.71
2213
2301
4.090057
GAAGAAGTGCGGCGTGGC
62.090
66.667
9.37
0.00
0.00
5.01
2257
2345
1.762222
CGGCAACCGCGGAGATTAAG
61.762
60.000
35.90
12.62
41.17
1.85
2449
2543
2.230025
GACGATCATCACGGGATCTGAT
59.770
50.000
3.41
3.41
39.17
2.90
2567
2661
1.079503
GGCGACAAACTAAGCTCCAG
58.920
55.000
0.00
0.00
0.00
3.86
2575
2669
1.666553
CGTGGCTGGCGACAAACTA
60.667
57.895
0.00
0.00
42.06
2.24
2642
2736
2.588314
CTCCCTCGATGCAGCAGC
60.588
66.667
1.53
0.00
42.57
5.25
2735
2829
2.423517
CCCCTCTTATCTTTTCCTGCCC
60.424
54.545
0.00
0.00
0.00
5.36
2748
2842
3.399181
CCACGCTGCCCCCTCTTA
61.399
66.667
0.00
0.00
0.00
2.10
2835
2929
3.057734
GACAACCCTCGACACAAAGTAG
58.942
50.000
0.00
0.00
0.00
2.57
2915
3012
8.539117
TGACATATATCTCCATATGTACTGGG
57.461
38.462
8.35
0.00
46.96
4.45
2992
3091
1.826921
GCAGGGATCATGTGGCCAG
60.827
63.158
5.11
0.00
0.00
4.85
3048
3147
5.403558
TGGATACTTGTCTCTGGATAGGA
57.596
43.478
0.00
0.00
37.61
2.94
3081
3180
2.118294
AAAAGGACTGGCCCTGGC
59.882
61.111
0.00
0.00
36.49
4.85
3082
3181
0.610232
CTCAAAAGGACTGGCCCTGG
60.610
60.000
0.00
0.00
36.49
4.45
3093
3192
2.737252
GACACTCGTAAGCCTCAAAAGG
59.263
50.000
0.00
0.00
46.44
3.11
3100
3199
1.617322
TGACAGACACTCGTAAGCCT
58.383
50.000
0.00
0.00
37.18
4.58
3107
3206
5.140177
GCAACTTATTTTGACAGACACTCG
58.860
41.667
0.00
0.00
0.00
4.18
3192
3325
2.231478
GAGTTCTTTTGGGGCTTAAGGC
59.769
50.000
20.30
20.30
40.90
4.35
3302
3435
6.049149
GTCTACCATAAGATTACTGCTGCAA
58.951
40.000
3.02
0.00
0.00
4.08
3659
3833
1.002868
GTCTGGCCTCTGTGTGCAT
60.003
57.895
3.32
0.00
0.00
3.96
3705
3879
7.050377
ACTTCCCACTGAAACTATATGTGATG
58.950
38.462
0.00
0.00
31.06
3.07
3714
3888
5.836898
TCTACAAGACTTCCCACTGAAACTA
59.163
40.000
0.00
0.00
31.06
2.24
3727
3901
4.839121
TGTGTTGGTTGTCTACAAGACTT
58.161
39.130
8.42
0.00
45.27
3.01
3745
3919
8.396272
ACAATATTAGAGTTTCAAGCTTGTGT
57.604
30.769
25.19
14.26
0.00
3.72
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.