Multiple sequence alignment - TraesCS6D01G097400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G097400 chr6D 100.000 4078 0 0 1 4078 61144727 61140650 0.000000e+00 7531.0
1 TraesCS6D01G097400 chr6D 98.969 97 1 0 506 602 249994867 249994771 1.510000e-39 174.0
2 TraesCS6D01G097400 chr6D 95.918 98 2 2 3773 3869 61140859 61140955 1.520000e-34 158.0
3 TraesCS6D01G097400 chr6D 90.805 87 5 3 3780 3864 171888178 171888263 3.330000e-21 113.0
4 TraesCS6D01G097400 chr6D 88.889 90 5 4 3780 3866 171888262 171888175 5.570000e-19 106.0
5 TraesCS6D01G097400 chr6B 91.447 2163 117 34 1344 3458 135120231 135118089 0.000000e+00 2907.0
6 TraesCS6D01G097400 chr6B 87.240 674 44 19 632 1277 135120914 135120255 0.000000e+00 730.0
7 TraesCS6D01G097400 chr6B 86.364 66 6 3 3396 3458 708680300 708680365 7.310000e-08 69.4
8 TraesCS6D01G097400 chr6A 91.686 2105 82 37 1590 3681 77787156 77785132 0.000000e+00 2832.0
9 TraesCS6D01G097400 chr6A 91.071 952 42 20 627 1556 77789112 77788182 0.000000e+00 1247.0
10 TraesCS6D01G097400 chr6A 96.804 219 5 2 3853 4070 77784856 77784639 8.330000e-97 364.0
11 TraesCS6D01G097400 chr6A 89.007 282 25 3 234 509 77789432 77789151 1.090000e-90 344.0
12 TraesCS6D01G097400 chr6A 94.330 194 10 1 1 193 77789624 77789431 3.080000e-76 296.0
13 TraesCS6D01G097400 chr6A 98.039 51 1 0 3823 3873 1829976 1830026 5.610000e-14 89.8
14 TraesCS6D01G097400 chr6A 97.959 49 1 0 3696 3744 77785053 77785005 7.260000e-13 86.1
15 TraesCS6D01G097400 chr6A 100.000 40 0 0 4022 4061 77784640 77784601 1.570000e-09 75.0
16 TraesCS6D01G097400 chr6A 95.455 44 2 0 192 235 580281906 580281863 2.030000e-08 71.3
17 TraesCS6D01G097400 chr4A 86.574 216 13 5 234 444 141126020 141125816 1.480000e-54 224.0
18 TraesCS6D01G097400 chr4A 83.178 107 15 3 3975 4078 42265518 42265412 1.210000e-15 95.3
19 TraesCS6D01G097400 chr4A 95.349 43 0 1 184 224 730065379 730065421 2.630000e-07 67.6
20 TraesCS6D01G097400 chr3D 86.574 216 13 5 234 444 24162030 24161826 1.480000e-54 224.0
21 TraesCS6D01G097400 chr3D 97.980 99 1 1 508 606 530665315 530665412 1.950000e-38 171.0
22 TraesCS6D01G097400 chr3D 86.598 97 12 1 3972 4068 508395188 508395283 5.570000e-19 106.0
23 TraesCS6D01G097400 chr3D 82.178 101 16 2 3969 4069 26207327 26207425 7.260000e-13 86.1
24 TraesCS6D01G097400 chr3D 93.023 43 3 0 182 224 603017393 603017435 3.400000e-06 63.9
25 TraesCS6D01G097400 chr3B 86.574 216 13 5 234 444 201489581 201489377 1.480000e-54 224.0
26 TraesCS6D01G097400 chr3B 86.000 100 7 6 3972 4068 671153739 671153834 2.590000e-17 100.0
27 TraesCS6D01G097400 chr7B 86.512 215 13 5 234 443 397631790 397631587 5.310000e-54 222.0
28 TraesCS6D01G097400 chrUn 86.111 216 14 5 234 444 30304570 30304774 6.860000e-53 219.0
29 TraesCS6D01G097400 chrUn 86.111 216 14 5 234 444 425830823 425830619 6.860000e-53 219.0
30 TraesCS6D01G097400 chrUn 93.750 96 5 1 99 193 425830917 425830822 4.250000e-30 143.0
31 TraesCS6D01G097400 chrUn 89.706 68 6 1 3766 3832 131947795 131947862 7.260000e-13 86.1
32 TraesCS6D01G097400 chr5D 86.111 216 14 5 234 444 503327357 503327153 6.860000e-53 219.0
33 TraesCS6D01G097400 chr5D 93.750 96 5 1 99 193 6239342 6239437 4.250000e-30 143.0
34 TraesCS6D01G097400 chr5D 93.750 96 5 1 99 193 503327451 503327356 4.250000e-30 143.0
35 TraesCS6D01G097400 chr5D 89.796 49 4 1 176 224 492282450 492282497 1.220000e-05 62.1
36 TraesCS6D01G097400 chr1A 86.111 216 14 5 234 444 554451365 554451569 6.860000e-53 219.0
37 TraesCS6D01G097400 chr1A 98.958 96 1 0 507 602 12578142 12578047 5.420000e-39 172.0
38 TraesCS6D01G097400 chr4D 98.958 96 1 0 507 602 54412657 54412562 5.420000e-39 172.0
39 TraesCS6D01G097400 chr4D 97.030 101 2 1 506 605 457526185 457526285 7.010000e-38 169.0
40 TraesCS6D01G097400 chr4D 89.655 87 4 4 3780 3863 493811164 493811080 5.570000e-19 106.0
41 TraesCS6D01G097400 chr4D 88.506 87 5 4 3780 3863 493811080 493811164 2.590000e-17 100.0
42 TraesCS6D01G097400 chr4D 95.122 41 2 0 184 224 26251284 26251324 9.460000e-07 65.8
43 TraesCS6D01G097400 chr7D 96.078 102 4 0 501 602 617181657 617181758 2.520000e-37 167.0
44 TraesCS6D01G097400 chr7D 93.750 96 5 1 99 193 231540639 231540544 4.250000e-30 143.0
45 TraesCS6D01G097400 chr7D 91.837 49 2 2 177 224 605880622 605880575 2.630000e-07 67.6
46 TraesCS6D01G097400 chr5A 95.283 106 4 1 498 602 60248630 60248525 2.520000e-37 167.0
47 TraesCS6D01G097400 chr5A 93.750 64 2 2 3769 3832 53591650 53591711 1.210000e-15 95.3
48 TraesCS6D01G097400 chr5A 93.651 63 2 2 3770 3832 545057444 545057384 4.340000e-15 93.5
49 TraesCS6D01G097400 chr5A 95.000 60 2 1 3773 3832 600214049 600214107 4.340000e-15 93.5
50 TraesCS6D01G097400 chr5A 97.917 48 1 0 3823 3870 600214095 600214048 2.610000e-12 84.2
51 TraesCS6D01G097400 chr3A 96.078 102 4 0 501 602 572598439 572598540 2.520000e-37 167.0
52 TraesCS6D01G097400 chr3A 92.105 114 7 2 501 613 523554110 523554222 4.220000e-35 159.0
53 TraesCS6D01G097400 chr2A 94.792 96 4 1 99 193 419792718 419792623 9.130000e-32 148.0
54 TraesCS6D01G097400 chr1D 93.750 96 5 1 99 193 244197849 244197754 4.250000e-30 143.0
55 TraesCS6D01G097400 chr1D 93.750 96 5 1 99 193 244765043 244764948 4.250000e-30 143.0
56 TraesCS6D01G097400 chr1D 93.750 96 5 1 99 193 254473358 254473263 4.250000e-30 143.0
57 TraesCS6D01G097400 chr1D 95.652 46 2 0 192 237 466606107 466606062 1.570000e-09 75.0
58 TraesCS6D01G097400 chr1D 100.000 37 0 0 188 224 399192704 399192668 7.310000e-08 69.4
59 TraesCS6D01G097400 chr4B 92.982 57 4 0 3811 3867 122296397 122296453 2.610000e-12 84.2
60 TraesCS6D01G097400 chr4B 91.228 57 4 1 179 235 377942779 377942724 4.370000e-10 76.8
61 TraesCS6D01G097400 chr2B 82.796 93 9 6 3811 3898 157740542 157740632 4.370000e-10 76.8
62 TraesCS6D01G097400 chr7A 97.222 36 1 0 4034 4069 427616349 427616314 1.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G097400 chr6D 61140650 61144727 4077 True 7531.000000 7531 100.000000 1 4078 1 chr6D.!!$R1 4077
1 TraesCS6D01G097400 chr6B 135118089 135120914 2825 True 1818.500000 2907 89.343500 632 3458 2 chr6B.!!$R1 2826
2 TraesCS6D01G097400 chr6A 77784601 77789624 5023 True 749.157143 2832 94.408143 1 4070 7 chr6A.!!$R2 4069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 903 0.252881 TGGTGGCAATCCTCTCCTCT 60.253 55.0 0.0 0.0 0.00 3.69 F
2467 3539 0.178767 TGCTCTGGCGATGTAAGCAT 59.821 50.0 0.0 0.0 42.25 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 3756 0.680061 TGCTGCAATGTTTGGCATGA 59.320 45.0 0.0 0.00 39.65 3.07 R
3757 4929 0.037017 TAGGTTTGCCGGCTTGCTAA 59.963 50.0 29.7 10.44 40.50 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 4.525487 ACATGTTCTTGCAACATCCTTGAT 59.475 37.500 0.00 0.00 38.69 2.57
123 124 9.976511 CATCCTTGATGTATTTGCAATTAATCT 57.023 29.630 0.00 0.00 35.54 2.40
167 168 2.972589 ATCTCCCCCACCTCCCATCG 62.973 65.000 0.00 0.00 0.00 3.84
205 207 9.729281 AGTATTCAAAATTACTCCCTTCGTAAA 57.271 29.630 0.00 0.00 31.36 2.01
206 208 9.764870 GTATTCAAAATTACTCCCTTCGTAAAC 57.235 33.333 0.00 0.00 31.36 2.01
207 209 8.631480 ATTCAAAATTACTCCCTTCGTAAACT 57.369 30.769 0.00 0.00 31.36 2.66
208 210 9.729281 ATTCAAAATTACTCCCTTCGTAAACTA 57.271 29.630 0.00 0.00 31.36 2.24
209 211 9.558396 TTCAAAATTACTCCCTTCGTAAACTAA 57.442 29.630 0.00 0.00 31.36 2.24
210 212 9.729281 TCAAAATTACTCCCTTCGTAAACTAAT 57.271 29.630 0.00 0.00 31.36 1.73
218 220 8.358895 ACTCCCTTCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
219 221 7.365741 TCCCTTCGTAAACTAATATAAGAGCG 58.634 38.462 0.00 0.00 0.00 5.03
220 222 7.013655 TCCCTTCGTAAACTAATATAAGAGCGT 59.986 37.037 0.00 0.00 0.00 5.07
221 223 7.650903 CCCTTCGTAAACTAATATAAGAGCGTT 59.349 37.037 0.00 0.00 0.00 4.84
222 224 9.028185 CCTTCGTAAACTAATATAAGAGCGTTT 57.972 33.333 0.00 0.00 0.00 3.60
229 231 9.530633 AAACTAATATAAGAGCGTTTACAGAGG 57.469 33.333 0.00 0.00 0.00 3.69
230 232 7.659186 ACTAATATAAGAGCGTTTACAGAGGG 58.341 38.462 0.00 0.00 0.00 4.30
231 233 6.726490 AATATAAGAGCGTTTACAGAGGGA 57.274 37.500 0.00 0.00 0.00 4.20
232 234 4.657436 ATAAGAGCGTTTACAGAGGGAG 57.343 45.455 0.00 0.00 0.00 4.30
233 235 1.926108 AGAGCGTTTACAGAGGGAGT 58.074 50.000 0.00 0.00 0.00 3.85
234 236 3.083122 AGAGCGTTTACAGAGGGAGTA 57.917 47.619 0.00 0.00 0.00 2.59
243 245 7.469732 GCGTTTACAGAGGGAGTATACTACAAT 60.470 40.741 17.06 4.63 0.00 2.71
245 247 5.793030 ACAGAGGGAGTATACTACAATGC 57.207 43.478 17.06 0.00 0.00 3.56
334 341 9.640952 CCCCTTAGTGAAATATTAATCCTCAAA 57.359 33.333 0.00 0.00 0.00 2.69
435 443 9.442047 ACATCCTATAGTTAAGCATATCAAAGC 57.558 33.333 0.00 0.00 0.00 3.51
436 444 8.887717 CATCCTATAGTTAAGCATATCAAAGCC 58.112 37.037 0.00 0.00 0.00 4.35
444 452 8.244113 AGTTAAGCATATCAAAGCCAACTTTAC 58.756 33.333 0.00 0.00 44.41 2.01
454 462 9.830975 ATCAAAGCCAACTTTACAACTTAAAAT 57.169 25.926 0.00 0.00 44.41 1.82
487 495 5.069318 TGTGCATGTGTGATTCCTTTAGAA 58.931 37.500 0.00 0.00 39.32 2.10
488 496 5.048782 TGTGCATGTGTGATTCCTTTAGAAC 60.049 40.000 0.00 0.00 37.29 3.01
497 505 9.581099 GTGTGATTCCTTTAGAACTTTTTCAAA 57.419 29.630 0.00 0.00 37.29 2.69
516 524 8.631480 TTTCAAAAATAGAAAGTACTCCCTCC 57.369 34.615 0.00 0.00 31.79 4.30
517 525 6.403878 TCAAAAATAGAAAGTACTCCCTCCG 58.596 40.000 0.00 0.00 0.00 4.63
519 527 6.370186 AAAATAGAAAGTACTCCCTCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
521 529 3.957591 AGAAAGTACTCCCTCCGTTTC 57.042 47.619 0.00 0.00 0.00 2.78
522 530 3.236896 AGAAAGTACTCCCTCCGTTTCA 58.763 45.455 0.00 0.00 0.00 2.69
523 531 3.644738 AGAAAGTACTCCCTCCGTTTCAA 59.355 43.478 0.00 0.00 0.00 2.69
524 532 4.102054 AGAAAGTACTCCCTCCGTTTCAAA 59.898 41.667 0.00 0.00 0.00 2.69
526 534 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
527 535 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
530 538 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
531 539 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
532 540 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
533 541 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
534 542 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
535 543 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
536 544 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
537 545 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
538 546 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
539 547 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
540 548 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
541 549 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
542 550 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
543 551 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
544 552 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
545 553 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
546 554 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
547 555 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
548 556 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
549 557 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
550 558 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
551 559 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
552 560 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
553 561 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
554 562 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
555 563 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
556 564 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
577 585 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
578 586 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
579 587 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
580 588 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
581 589 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
582 590 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
583 591 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
584 592 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
585 593 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
586 594 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
587 595 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
588 596 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
589 597 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
590 598 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
591 599 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
592 600 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
593 601 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
594 602 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
595 603 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
596 604 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
597 605 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
598 606 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
599 607 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
615 623 1.053264 AGGGAGATGCCAGGCAGTAG 61.053 60.000 21.51 0.00 43.65 2.57
616 624 1.341156 GGGAGATGCCAGGCAGTAGT 61.341 60.000 21.51 1.78 43.65 2.73
617 625 1.414158 GGAGATGCCAGGCAGTAGTA 58.586 55.000 21.51 0.00 43.65 1.82
618 626 1.974236 GGAGATGCCAGGCAGTAGTAT 59.026 52.381 21.51 0.41 43.65 2.12
619 627 2.370189 GGAGATGCCAGGCAGTAGTATT 59.630 50.000 21.51 0.00 43.65 1.89
620 628 3.181450 GGAGATGCCAGGCAGTAGTATTT 60.181 47.826 21.51 0.00 43.65 1.40
621 629 4.061596 GAGATGCCAGGCAGTAGTATTTC 58.938 47.826 21.51 9.80 43.65 2.17
622 630 2.710096 TGCCAGGCAGTAGTATTTCC 57.290 50.000 11.22 0.00 33.32 3.13
623 631 2.196595 TGCCAGGCAGTAGTATTTCCT 58.803 47.619 11.22 0.00 33.32 3.36
624 632 2.576191 TGCCAGGCAGTAGTATTTCCTT 59.424 45.455 11.22 0.00 33.32 3.36
625 633 3.010138 TGCCAGGCAGTAGTATTTCCTTT 59.990 43.478 11.22 0.00 33.32 3.11
886 903 0.252881 TGGTGGCAATCCTCTCCTCT 60.253 55.000 0.00 0.00 0.00 3.69
887 904 0.467804 GGTGGCAATCCTCTCCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
888 905 0.467804 GTGGCAATCCTCTCCTCTCC 59.532 60.000 0.00 0.00 0.00 3.71
889 906 0.341258 TGGCAATCCTCTCCTCTCCT 59.659 55.000 0.00 0.00 0.00 3.69
890 907 1.274069 TGGCAATCCTCTCCTCTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
951 974 2.840102 CCCTCGCCGATCTCCCTT 60.840 66.667 0.00 0.00 0.00 3.95
996 1043 0.254178 GAGGGCTCAAGCTCAATCCA 59.746 55.000 4.41 0.00 46.01 3.41
1188 1247 2.182030 CTCGGCTCCGTCTGGAAC 59.818 66.667 8.28 0.00 45.87 3.62
1215 1274 1.152030 AGGCCCTTCTCTCCACACA 60.152 57.895 0.00 0.00 0.00 3.72
1216 1275 1.003233 GGCCCTTCTCTCCACACAC 60.003 63.158 0.00 0.00 0.00 3.82
1252 1314 2.595655 GGGGACCGGCAGCTATTT 59.404 61.111 0.00 0.00 40.86 1.40
1264 1326 2.112815 GCTATTTCCCGCGTTGCCT 61.113 57.895 4.92 0.00 0.00 4.75
1273 1335 2.877691 GCGTTGCCTGGATGGAAC 59.122 61.111 0.00 0.00 38.35 3.62
1290 1352 4.979335 TGGAACACCATGAATTACTGTGA 58.021 39.130 0.00 0.00 0.00 3.58
1291 1353 5.569355 TGGAACACCATGAATTACTGTGAT 58.431 37.500 0.00 0.00 0.00 3.06
1293 1355 6.150976 TGGAACACCATGAATTACTGTGATTC 59.849 38.462 15.95 15.95 34.78 2.52
1294 1356 5.801350 ACACCATGAATTACTGTGATTCG 57.199 39.130 17.17 8.35 36.52 3.34
1295 1357 4.635765 ACACCATGAATTACTGTGATTCGG 59.364 41.667 17.17 15.36 36.52 4.30
1296 1358 4.035558 CACCATGAATTACTGTGATTCGGG 59.964 45.833 22.71 22.71 36.52 5.14
1297 1359 4.080582 ACCATGAATTACTGTGATTCGGGA 60.081 41.667 27.28 12.03 36.52 5.14
1298 1360 4.512944 CCATGAATTACTGTGATTCGGGAG 59.487 45.833 21.15 11.63 36.52 4.30
1299 1361 3.531538 TGAATTACTGTGATTCGGGAGC 58.468 45.455 17.17 0.00 36.52 4.70
1300 1362 3.197766 TGAATTACTGTGATTCGGGAGCT 59.802 43.478 17.17 0.00 36.52 4.09
1301 1363 2.961526 TTACTGTGATTCGGGAGCTC 57.038 50.000 4.71 4.71 0.00 4.09
1302 1364 1.112113 TACTGTGATTCGGGAGCTCC 58.888 55.000 25.59 25.59 0.00 4.70
1318 1380 3.589988 AGCTCCTAATGTCTTGTTCGTG 58.410 45.455 0.00 0.00 0.00 4.35
1320 1382 2.333926 TCCTAATGTCTTGTTCGTGCG 58.666 47.619 0.00 0.00 0.00 5.34
1342 1404 6.743110 GCGATGAGCCTATGATCTGATAATA 58.257 40.000 0.00 0.00 40.81 0.98
1343 1405 7.205992 GCGATGAGCCTATGATCTGATAATAA 58.794 38.462 0.00 0.00 40.81 1.40
1344 1406 7.871973 GCGATGAGCCTATGATCTGATAATAAT 59.128 37.037 0.00 0.00 40.81 1.28
1415 1477 0.251916 TCGATCACCATGAACCCACC 59.748 55.000 0.00 0.00 0.00 4.61
1431 1496 2.561569 CCACCCAGTCGATTTGGTATC 58.438 52.381 15.28 0.00 33.73 2.24
1527 1593 2.302230 GCCGCACATTGCAACACAC 61.302 57.895 0.00 0.00 45.36 3.82
1528 1594 1.065436 CCGCACATTGCAACACACA 59.935 52.632 0.00 0.00 45.36 3.72
1532 1598 1.589320 GCACATTGCAACACACAAGTG 59.411 47.619 0.00 3.75 46.57 3.16
1677 2737 6.436843 TGTTCTTCTGTTCTTTGAAGTTCC 57.563 37.500 0.00 0.00 40.20 3.62
1775 2836 7.101652 CTTGACCTCAAGCTCATAGTACTAA 57.898 40.000 6.70 0.00 45.59 2.24
1782 2843 9.817809 CCTCAAGCTCATAGTACTAATTTTACA 57.182 33.333 6.70 0.00 0.00 2.41
1833 2894 6.067350 GCAAAGGGGAAAGAGATCTGATTAT 58.933 40.000 0.00 0.00 0.00 1.28
1865 2928 4.982999 TGAACTACTGACGATACTTGAGC 58.017 43.478 0.00 0.00 0.00 4.26
1868 2931 6.542735 TGAACTACTGACGATACTTGAGCTAT 59.457 38.462 0.00 0.00 0.00 2.97
1869 2932 7.713942 TGAACTACTGACGATACTTGAGCTATA 59.286 37.037 0.00 0.00 0.00 1.31
1872 2935 9.722184 ACTACTGACGATACTTGAGCTATAATA 57.278 33.333 0.00 0.00 0.00 0.98
1898 2961 6.182507 ACTGGTGGTCTTGTACATTTAGAA 57.817 37.500 0.00 0.00 0.00 2.10
1899 2962 5.995897 ACTGGTGGTCTTGTACATTTAGAAC 59.004 40.000 4.42 4.42 0.00 3.01
1924 2987 2.093500 TGTGGCTGGCATCTTACTAGTG 60.093 50.000 7.33 0.00 0.00 2.74
1978 3046 1.563924 TGGAGTACACTTATGGCGGT 58.436 50.000 0.00 0.00 0.00 5.68
2015 3083 1.689273 ACAGCCTTATAGCTTCCGAGG 59.311 52.381 0.00 0.00 42.61 4.63
2019 3087 3.200165 AGCCTTATAGCTTCCGAGGTTTT 59.800 43.478 0.00 0.00 41.41 2.43
2100 3168 5.353400 GCTTTAGTTCTATTACCTTTGGCGT 59.647 40.000 0.00 0.00 0.00 5.68
2154 3222 2.889045 TCGATACCGTTATCTTCTGGGG 59.111 50.000 0.00 0.00 33.07 4.96
2417 3489 2.711009 AGGTTCACTGGATTTCTCCACA 59.289 45.455 0.00 0.00 46.95 4.17
2453 3525 4.025040 TGATGAAGTGTCCAAATGCTCT 57.975 40.909 0.00 0.00 0.00 4.09
2467 3539 0.178767 TGCTCTGGCGATGTAAGCAT 59.821 50.000 0.00 0.00 42.25 3.79
2468 3540 0.585357 GCTCTGGCGATGTAAGCATG 59.415 55.000 0.00 0.00 35.07 4.06
2537 3609 9.995003 TTTCATAACTTGATAACCTTTTTGCAT 57.005 25.926 0.00 0.00 33.34 3.96
2613 3687 4.251268 GACAGGCATTTCTAGTAACGGTT 58.749 43.478 0.00 0.00 0.00 4.44
2671 3745 8.691661 ACTGAGCTTGAGATTTAAAGGTAAAA 57.308 30.769 0.00 0.00 34.43 1.52
2701 3775 0.680061 TCATGCCAAACATTGCAGCA 59.320 45.000 0.00 0.00 41.46 4.41
2760 3834 3.896648 AACTCGTTTGTGGTAATGCTG 57.103 42.857 0.00 0.00 0.00 4.41
3088 4162 5.708697 TGAAAGATAGGTAGTGAACGTCTGA 59.291 40.000 0.00 0.00 0.00 3.27
3090 4164 4.200874 AGATAGGTAGTGAACGTCTGAGG 58.799 47.826 0.00 0.00 0.00 3.86
3139 4218 4.076394 TGTTGTTACCCATTCTTGTAGCC 58.924 43.478 0.00 0.00 0.00 3.93
3151 4230 0.251653 TTGTAGCCGGGACTCTCTGT 60.252 55.000 2.18 0.00 0.00 3.41
3163 4242 1.964223 ACTCTCTGTGTTGTGTCGGAT 59.036 47.619 0.00 0.00 0.00 4.18
3255 4334 0.036022 TGCCACATGTCCGTTGATGA 59.964 50.000 0.00 0.00 0.00 2.92
3259 4338 2.160219 CCACATGTCCGTTGATGACTTG 59.840 50.000 0.00 0.00 41.26 3.16
3280 4359 1.334556 GATTCTGTGTTGCTGTGCACA 59.665 47.619 20.37 20.37 42.50 4.57
3381 4473 4.393371 GTGGAGATGTTAGTTTGAGCCTTC 59.607 45.833 0.00 0.00 0.00 3.46
3458 4550 9.187996 TGAGCCAAAAATCATCTATTTATGTGA 57.812 29.630 0.00 0.00 36.76 3.58
3459 4551 9.674824 GAGCCAAAAATCATCTATTTATGTGAG 57.325 33.333 0.00 0.00 36.76 3.51
3460 4552 8.139989 AGCCAAAAATCATCTATTTATGTGAGC 58.860 33.333 0.00 0.00 36.76 4.26
3461 4553 7.383300 GCCAAAAATCATCTATTTATGTGAGCC 59.617 37.037 0.00 0.00 36.76 4.70
3462 4554 8.415553 CCAAAAATCATCTATTTATGTGAGCCA 58.584 33.333 0.00 0.00 36.76 4.75
3463 4555 9.806203 CAAAAATCATCTATTTATGTGAGCCAA 57.194 29.630 0.00 0.00 36.76 4.52
3494 4586 5.543507 TCTATTTTGGCTTTGGCTTTTGA 57.456 34.783 0.00 0.00 38.73 2.69
3495 4587 5.540911 TCTATTTTGGCTTTGGCTTTTGAG 58.459 37.500 0.00 0.00 38.73 3.02
3496 4588 3.902881 TTTTGGCTTTGGCTTTTGAGA 57.097 38.095 0.00 0.00 38.73 3.27
3497 4589 3.902881 TTTGGCTTTGGCTTTTGAGAA 57.097 38.095 0.00 0.00 38.73 2.87
3498 4590 4.420522 TTTGGCTTTGGCTTTTGAGAAT 57.579 36.364 0.00 0.00 38.73 2.40
3499 4591 4.420522 TTGGCTTTGGCTTTTGAGAATT 57.579 36.364 0.00 0.00 38.73 2.17
3500 4592 4.420522 TGGCTTTGGCTTTTGAGAATTT 57.579 36.364 0.00 0.00 38.73 1.82
3501 4593 4.779696 TGGCTTTGGCTTTTGAGAATTTT 58.220 34.783 0.00 0.00 38.73 1.82
3502 4594 4.575645 TGGCTTTGGCTTTTGAGAATTTTG 59.424 37.500 0.00 0.00 38.73 2.44
3503 4595 4.023792 GGCTTTGGCTTTTGAGAATTTTGG 60.024 41.667 0.00 0.00 38.73 3.28
3527 4619 1.641552 TACCATTGCTGTAGGCCCCC 61.642 60.000 0.00 0.00 40.92 5.40
3561 4653 1.066257 GAATGCAAATGCGGGCGAT 59.934 52.632 0.00 0.00 45.83 4.58
3590 4683 7.670364 CCACCCATCTTAAAAATCAACTTCTT 58.330 34.615 0.00 0.00 0.00 2.52
3609 4702 8.144862 ACTTCTTCCTACTTCAGATCTCAATT 57.855 34.615 0.00 0.00 0.00 2.32
3679 4804 1.922821 CCACGGGGAAGGGATGAAT 59.077 57.895 0.00 0.00 35.59 2.57
3756 4928 5.507315 GCAAACAAGCAAAGGAACTAGCTAA 60.507 40.000 0.00 0.00 46.71 3.09
3757 4929 6.681777 CAAACAAGCAAAGGAACTAGCTAAT 58.318 36.000 0.00 0.00 46.71 1.73
3774 4946 0.246360 AATTAGCAAGCCGGCAAACC 59.754 50.000 31.54 13.77 35.83 3.27
3785 4957 1.474498 CCGGCAAACCTACATACTCCC 60.474 57.143 0.00 0.00 0.00 4.30
3788 4960 2.158798 GGCAAACCTACATACTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
3791 4963 2.842645 ACCTACATACTCCCTCCGTT 57.157 50.000 0.00 0.00 0.00 4.44
3792 4964 2.664015 ACCTACATACTCCCTCCGTTC 58.336 52.381 0.00 0.00 0.00 3.95
3793 4965 1.962100 CCTACATACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
3794 4966 2.424523 CCTACATACTCCCTCCGTTCCT 60.425 54.545 0.00 0.00 0.00 3.36
3798 4970 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
3806 4978 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3807 4979 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3808 4980 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3809 4981 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3810 4982 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3811 4983 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3812 4984 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3813 4985 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3814 4986 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3815 4987 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3816 4988 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3818 4990 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3820 4992 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3822 4994 6.566197 ACTTGTCTTTCTAGGCATTTCAAG 57.434 37.500 0.00 0.00 35.56 3.02
3824 4996 6.772716 ACTTGTCTTTCTAGGCATTTCAAGAA 59.227 34.615 15.50 0.00 35.56 2.52
3825 4997 7.285401 ACTTGTCTTTCTAGGCATTTCAAGAAA 59.715 33.333 15.50 0.00 35.56 2.52
3826 4998 7.765695 TGTCTTTCTAGGCATTTCAAGAAAT 57.234 32.000 2.31 2.31 41.33 2.17
3839 5011 7.765695 ATTTCAAGAAATGCCTAGAAAGACA 57.234 32.000 7.21 0.00 39.36 3.41
3840 5012 7.581213 TTTCAAGAAATGCCTAGAAAGACAA 57.419 32.000 0.00 0.00 0.00 3.18
3841 5013 6.808008 TCAAGAAATGCCTAGAAAGACAAG 57.192 37.500 0.00 0.00 0.00 3.16
3842 5014 6.299141 TCAAGAAATGCCTAGAAAGACAAGT 58.701 36.000 0.00 0.00 0.00 3.16
3843 5015 7.450074 TCAAGAAATGCCTAGAAAGACAAGTA 58.550 34.615 0.00 0.00 0.00 2.24
3846 5018 8.870075 AGAAATGCCTAGAAAGACAAGTATTT 57.130 30.769 0.00 0.00 0.00 1.40
3847 5019 9.959721 AGAAATGCCTAGAAAGACAAGTATTTA 57.040 29.630 0.00 0.00 0.00 1.40
3850 5022 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3851 5023 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3860 5060 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3903 5103 7.187480 GGAAAAGAACTAAACACAAGTGAGTC 58.813 38.462 7.28 0.00 0.00 3.36
3911 5111 3.179443 ACACAAGTGAGTCGACAACAT 57.821 42.857 19.50 5.82 0.00 2.71
3966 5166 8.305046 AGTGCTAATCTTCACTAGAAAGAGAT 57.695 34.615 14.56 10.12 41.32 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.798859 ATCTTCTGCAATACTAGAACAAACAT 57.201 30.769 0.00 0.00 0.00 2.71
65 66 7.710044 AGAACATGTGATCTTCTGCAATACTAG 59.290 37.037 0.00 0.00 0.00 2.57
132 133 6.666113 TGGGGGAGATAAAAACTTTTGGATAC 59.334 38.462 0.00 0.00 0.00 2.24
151 152 2.638665 TACGATGGGAGGTGGGGGA 61.639 63.158 0.00 0.00 0.00 4.81
193 195 7.537991 CGCTCTTATATTAGTTTACGAAGGGAG 59.462 40.741 0.00 0.00 0.00 4.30
194 196 7.013655 ACGCTCTTATATTAGTTTACGAAGGGA 59.986 37.037 0.00 0.00 0.00 4.20
195 197 7.144000 ACGCTCTTATATTAGTTTACGAAGGG 58.856 38.462 0.00 0.00 0.00 3.95
196 198 8.571461 AACGCTCTTATATTAGTTTACGAAGG 57.429 34.615 0.00 0.00 0.00 3.46
203 205 9.530633 CCTCTGTAAACGCTCTTATATTAGTTT 57.469 33.333 0.00 0.00 36.11 2.66
204 206 8.142551 CCCTCTGTAAACGCTCTTATATTAGTT 58.857 37.037 0.00 0.00 0.00 2.24
205 207 7.504911 TCCCTCTGTAAACGCTCTTATATTAGT 59.495 37.037 0.00 0.00 0.00 2.24
206 208 7.883217 TCCCTCTGTAAACGCTCTTATATTAG 58.117 38.462 0.00 0.00 0.00 1.73
207 209 7.504911 ACTCCCTCTGTAAACGCTCTTATATTA 59.495 37.037 0.00 0.00 0.00 0.98
208 210 6.324254 ACTCCCTCTGTAAACGCTCTTATATT 59.676 38.462 0.00 0.00 0.00 1.28
209 211 5.834204 ACTCCCTCTGTAAACGCTCTTATAT 59.166 40.000 0.00 0.00 0.00 0.86
210 212 5.198965 ACTCCCTCTGTAAACGCTCTTATA 58.801 41.667 0.00 0.00 0.00 0.98
211 213 4.024670 ACTCCCTCTGTAAACGCTCTTAT 58.975 43.478 0.00 0.00 0.00 1.73
212 214 3.428532 ACTCCCTCTGTAAACGCTCTTA 58.571 45.455 0.00 0.00 0.00 2.10
213 215 2.249139 ACTCCCTCTGTAAACGCTCTT 58.751 47.619 0.00 0.00 0.00 2.85
214 216 1.926108 ACTCCCTCTGTAAACGCTCT 58.074 50.000 0.00 0.00 0.00 4.09
215 217 4.579753 AGTATACTCCCTCTGTAAACGCTC 59.420 45.833 0.00 0.00 0.00 5.03
216 218 4.534797 AGTATACTCCCTCTGTAAACGCT 58.465 43.478 0.00 0.00 0.00 5.07
217 219 4.915158 AGTATACTCCCTCTGTAAACGC 57.085 45.455 0.00 0.00 0.00 4.84
218 220 6.932356 TGTAGTATACTCCCTCTGTAAACG 57.068 41.667 9.12 0.00 43.54 3.60
219 221 7.652507 GCATTGTAGTATACTCCCTCTGTAAAC 59.347 40.741 9.12 0.00 43.54 2.01
220 222 7.563924 AGCATTGTAGTATACTCCCTCTGTAAA 59.436 37.037 9.12 0.00 43.54 2.01
221 223 7.067421 AGCATTGTAGTATACTCCCTCTGTAA 58.933 38.462 9.12 0.00 43.54 2.41
222 224 6.611785 AGCATTGTAGTATACTCCCTCTGTA 58.388 40.000 9.12 0.00 43.54 2.74
223 225 5.459505 AGCATTGTAGTATACTCCCTCTGT 58.540 41.667 9.12 0.00 43.54 3.41
224 226 6.219473 CAAGCATTGTAGTATACTCCCTCTG 58.781 44.000 9.12 3.66 43.54 3.35
225 227 6.412362 CAAGCATTGTAGTATACTCCCTCT 57.588 41.667 9.12 0.00 43.54 3.69
291 298 6.901300 ACTAAGGGGAACATAACATAGAGTCA 59.099 38.462 0.00 0.00 0.00 3.41
298 305 9.936329 AATATTTCACTAAGGGGAACATAACAT 57.064 29.630 0.00 0.00 0.00 2.71
360 367 7.780008 TTGGTATTTTCATCGATCGTTACAT 57.220 32.000 15.94 0.00 0.00 2.29
416 424 8.525290 AAGTTGGCTTTGATATGCTTAACTAT 57.475 30.769 0.00 0.00 36.44 2.12
420 428 8.116651 TGTAAAGTTGGCTTTGATATGCTTAA 57.883 30.769 3.17 0.00 44.00 1.85
442 450 9.190858 GCACATGAATGTTGATTTTAAGTTGTA 57.809 29.630 0.00 0.00 39.39 2.41
444 452 8.074474 TGCACATGAATGTTGATTTTAAGTTG 57.926 30.769 0.00 0.00 39.39 3.16
454 462 3.568853 TCACACATGCACATGAATGTTGA 59.431 39.130 17.19 7.90 41.43 3.18
497 505 6.013984 TGAAACGGAGGGAGTACTTTCTATTT 60.014 38.462 0.00 1.81 0.00 1.40
509 517 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
511 519 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
512 520 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
513 521 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
514 522 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
515 523 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
516 524 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
517 525 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
519 527 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
521 529 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
522 530 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
523 531 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
524 532 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
526 534 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
527 535 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
530 538 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
551 559 9.328845 CCCAACTTTGTACTAACTTTGTACTAA 57.671 33.333 12.73 10.75 40.44 2.24
552 560 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
553 561 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
554 562 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
555 563 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
556 564 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
557 565 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
558 566 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
559 567 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
560 568 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
561 569 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
562 570 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
563 571 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
564 572 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
565 573 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
566 574 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
567 575 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
568 576 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
569 577 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
570 578 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
571 579 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
572 580 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
573 581 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
574 582 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
575 583 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
576 584 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
577 585 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
578 586 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
579 587 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
580 588 4.037927 TCTCCCTCCGTTCCAAAATAGAT 58.962 43.478 0.00 0.00 0.00 1.98
581 589 3.446968 TCTCCCTCCGTTCCAAAATAGA 58.553 45.455 0.00 0.00 0.00 1.98
582 590 3.906720 TCTCCCTCCGTTCCAAAATAG 57.093 47.619 0.00 0.00 0.00 1.73
583 591 3.684413 GCATCTCCCTCCGTTCCAAAATA 60.684 47.826 0.00 0.00 0.00 1.40
584 592 2.945890 GCATCTCCCTCCGTTCCAAAAT 60.946 50.000 0.00 0.00 0.00 1.82
585 593 1.613255 GCATCTCCCTCCGTTCCAAAA 60.613 52.381 0.00 0.00 0.00 2.44
586 594 0.035439 GCATCTCCCTCCGTTCCAAA 60.035 55.000 0.00 0.00 0.00 3.28
587 595 1.602237 GCATCTCCCTCCGTTCCAA 59.398 57.895 0.00 0.00 0.00 3.53
588 596 2.367202 GGCATCTCCCTCCGTTCCA 61.367 63.158 0.00 0.00 0.00 3.53
589 597 2.317149 CTGGCATCTCCCTCCGTTCC 62.317 65.000 0.00 0.00 0.00 3.62
590 598 1.144936 CTGGCATCTCCCTCCGTTC 59.855 63.158 0.00 0.00 0.00 3.95
591 599 2.370445 CCTGGCATCTCCCTCCGTT 61.370 63.158 0.00 0.00 0.00 4.44
592 600 2.765807 CCTGGCATCTCCCTCCGT 60.766 66.667 0.00 0.00 0.00 4.69
593 601 4.247380 GCCTGGCATCTCCCTCCG 62.247 72.222 15.17 0.00 0.00 4.63
594 602 3.092511 TGCCTGGCATCTCCCTCC 61.093 66.667 19.30 0.00 31.71 4.30
595 603 1.050988 TACTGCCTGGCATCTCCCTC 61.051 60.000 23.64 0.00 38.13 4.30
596 604 1.003442 TACTGCCTGGCATCTCCCT 59.997 57.895 23.64 3.31 38.13 4.20
597 605 1.341156 ACTACTGCCTGGCATCTCCC 61.341 60.000 23.64 0.00 38.13 4.30
598 606 1.414158 TACTACTGCCTGGCATCTCC 58.586 55.000 23.64 0.00 38.13 3.71
599 607 3.760580 AATACTACTGCCTGGCATCTC 57.239 47.619 23.64 0.00 38.13 2.75
615 623 8.033038 GGGTGACAAAATAAGGAAAGGAAATAC 58.967 37.037 0.00 0.00 0.00 1.89
616 624 7.179516 GGGGTGACAAAATAAGGAAAGGAAATA 59.820 37.037 0.00 0.00 0.00 1.40
617 625 6.013725 GGGGTGACAAAATAAGGAAAGGAAAT 60.014 38.462 0.00 0.00 0.00 2.17
618 626 5.305902 GGGGTGACAAAATAAGGAAAGGAAA 59.694 40.000 0.00 0.00 0.00 3.13
619 627 4.836175 GGGGTGACAAAATAAGGAAAGGAA 59.164 41.667 0.00 0.00 0.00 3.36
620 628 4.140900 TGGGGTGACAAAATAAGGAAAGGA 60.141 41.667 0.00 0.00 0.00 3.36
621 629 4.021456 GTGGGGTGACAAAATAAGGAAAGG 60.021 45.833 0.00 0.00 0.00 3.11
622 630 4.832823 AGTGGGGTGACAAAATAAGGAAAG 59.167 41.667 0.00 0.00 0.00 2.62
623 631 4.810345 AGTGGGGTGACAAAATAAGGAAA 58.190 39.130 0.00 0.00 0.00 3.13
624 632 4.463050 AGTGGGGTGACAAAATAAGGAA 57.537 40.909 0.00 0.00 0.00 3.36
625 633 4.463050 AAGTGGGGTGACAAAATAAGGA 57.537 40.909 0.00 0.00 0.00 3.36
886 903 1.265454 GCTTCTTCCCCGGAGAAGGA 61.265 60.000 23.84 15.91 42.94 3.36
887 904 1.222113 GCTTCTTCCCCGGAGAAGG 59.778 63.158 23.84 11.17 42.94 3.46
888 905 1.222113 GGCTTCTTCCCCGGAGAAG 59.778 63.158 19.09 19.09 43.88 2.85
889 906 1.229529 AGGCTTCTTCCCCGGAGAA 60.230 57.895 0.73 0.00 0.00 2.87
890 907 1.686110 GAGGCTTCTTCCCCGGAGA 60.686 63.158 0.73 0.00 0.00 3.71
951 974 0.468648 TACAGATCTCTCGGCGAGGA 59.531 55.000 33.93 28.15 40.30 3.71
983 1030 2.028420 CATCGGTGGATTGAGCTTGA 57.972 50.000 0.00 0.00 0.00 3.02
996 1043 3.148279 GCCGTCTCCTCCATCGGT 61.148 66.667 0.00 0.00 44.07 4.69
1119 1178 4.821589 GAGGGGTCGAGCTTGCGG 62.822 72.222 15.18 0.00 0.00 5.69
1188 1247 1.614824 AGAAGGGCCTCTGACCTGG 60.615 63.158 6.46 0.00 37.13 4.45
1235 1294 1.526225 GAAATAGCTGCCGGTCCCC 60.526 63.158 1.90 0.00 0.00 4.81
1238 1300 1.887707 CGGGAAATAGCTGCCGGTC 60.888 63.158 1.90 0.00 45.69 4.79
1239 1301 2.189521 CGGGAAATAGCTGCCGGT 59.810 61.111 1.90 0.00 45.69 5.28
1243 1305 1.062525 CAACGCGGGAAATAGCTGC 59.937 57.895 12.47 0.00 0.00 5.25
1244 1306 1.062525 GCAACGCGGGAAATAGCTG 59.937 57.895 12.47 0.00 0.00 4.24
1245 1307 2.112815 GGCAACGCGGGAAATAGCT 61.113 57.895 12.47 0.00 0.00 3.32
1246 1308 2.112815 AGGCAACGCGGGAAATAGC 61.113 57.895 12.47 2.99 46.39 2.97
1247 1309 1.714899 CCAGGCAACGCGGGAAATAG 61.715 60.000 12.47 0.00 46.39 1.73
1248 1310 1.747367 CCAGGCAACGCGGGAAATA 60.747 57.895 12.47 0.00 46.39 1.40
1249 1311 2.837031 ATCCAGGCAACGCGGGAAAT 62.837 55.000 12.47 0.00 46.39 2.17
1250 1312 3.561120 ATCCAGGCAACGCGGGAAA 62.561 57.895 12.47 0.00 46.39 3.13
1251 1313 4.028490 ATCCAGGCAACGCGGGAA 62.028 61.111 12.47 0.00 46.39 3.97
1252 1314 4.776322 CATCCAGGCAACGCGGGA 62.776 66.667 12.47 6.51 46.39 5.14
1273 1335 4.035558 CCCGAATCACAGTAATTCATGGTG 59.964 45.833 0.00 0.00 33.60 4.17
1285 1347 1.403814 TAGGAGCTCCCGAATCACAG 58.596 55.000 29.54 0.00 40.87 3.66
1286 1348 1.860641 TTAGGAGCTCCCGAATCACA 58.139 50.000 29.54 1.44 40.87 3.58
1287 1349 2.103263 ACATTAGGAGCTCCCGAATCAC 59.897 50.000 29.54 1.26 38.05 3.06
1288 1350 2.365617 GACATTAGGAGCTCCCGAATCA 59.634 50.000 29.54 7.35 38.05 2.57
1289 1351 2.630580 AGACATTAGGAGCTCCCGAATC 59.369 50.000 29.54 19.26 38.05 2.52
1290 1352 2.683768 AGACATTAGGAGCTCCCGAAT 58.316 47.619 29.54 24.08 40.32 3.34
1291 1353 2.160721 AGACATTAGGAGCTCCCGAA 57.839 50.000 29.54 22.94 40.87 4.30
1293 1355 1.482593 ACAAGACATTAGGAGCTCCCG 59.517 52.381 29.54 17.26 40.87 5.14
1294 1356 3.536570 GAACAAGACATTAGGAGCTCCC 58.463 50.000 29.54 12.72 36.42 4.30
1295 1357 3.190874 CGAACAAGACATTAGGAGCTCC 58.809 50.000 26.22 26.22 0.00 4.70
1296 1358 3.614616 CACGAACAAGACATTAGGAGCTC 59.385 47.826 4.71 4.71 0.00 4.09
1297 1359 3.589988 CACGAACAAGACATTAGGAGCT 58.410 45.455 0.00 0.00 0.00 4.09
1298 1360 2.094417 GCACGAACAAGACATTAGGAGC 59.906 50.000 0.00 0.00 0.00 4.70
1299 1361 2.345641 CGCACGAACAAGACATTAGGAG 59.654 50.000 0.00 0.00 0.00 3.69
1300 1362 2.029739 TCGCACGAACAAGACATTAGGA 60.030 45.455 0.00 0.00 0.00 2.94
1301 1363 2.333926 TCGCACGAACAAGACATTAGG 58.666 47.619 0.00 0.00 0.00 2.69
1302 1364 3.612423 TCATCGCACGAACAAGACATTAG 59.388 43.478 0.00 0.00 0.00 1.73
1318 1380 3.523606 ATCAGATCATAGGCTCATCGC 57.476 47.619 0.00 0.00 38.13 4.58
1342 1404 8.046294 TCCAAATGTACAAACGTATGCTAATT 57.954 30.769 0.00 0.00 0.00 1.40
1343 1405 7.618502 TCCAAATGTACAAACGTATGCTAAT 57.381 32.000 0.00 0.00 0.00 1.73
1344 1406 7.436430 TTCCAAATGTACAAACGTATGCTAA 57.564 32.000 0.00 0.00 0.00 3.09
1364 1426 1.999735 GACTGCGAATCGACATTTCCA 59.000 47.619 6.91 0.00 0.00 3.53
1415 1477 1.217882 GCCGATACCAAATCGACTGG 58.782 55.000 12.76 12.76 43.59 4.00
1490 1556 2.595386 GCAGTAAACAAATTCCCTGCG 58.405 47.619 0.00 0.00 36.79 5.18
1645 2705 7.124147 TCAAAGAACAGAAGAACATTCCCTTTT 59.876 33.333 0.00 0.00 0.00 2.27
1647 2707 6.129179 TCAAAGAACAGAAGAACATTCCCTT 58.871 36.000 0.00 0.00 0.00 3.95
1661 2721 3.181501 TGTTGCGGAACTTCAAAGAACAG 60.182 43.478 20.82 0.00 32.79 3.16
1699 2759 7.292713 TGTAGAGTACACCAAAGTTATGTGA 57.707 36.000 10.67 0.00 32.89 3.58
1700 2760 6.090898 GCTGTAGAGTACACCAAAGTTATGTG 59.909 42.308 0.00 3.76 34.46 3.21
1755 2816 9.819267 GTAAAATTAGTACTATGAGCTTGAGGT 57.181 33.333 2.79 0.00 0.00 3.85
1833 2894 1.771854 TCAGTAGTTCAAACCCCAGCA 59.228 47.619 0.00 0.00 0.00 4.41
1872 2935 7.913789 TCTAAATGTACAAGACCACCAGTATT 58.086 34.615 0.00 0.00 0.00 1.89
1909 2972 9.533831 TCATAGATTATCACTAGTAAGATGCCA 57.466 33.333 0.00 0.00 0.00 4.92
1972 3040 3.008594 TCCTAAATTTCTTGAGACCGCCA 59.991 43.478 0.00 0.00 0.00 5.69
1978 3046 5.880901 AGGCTGTTCCTAAATTTCTTGAGA 58.119 37.500 0.00 0.00 45.41 3.27
2006 3074 4.287720 CAAACAACTAAAACCTCGGAAGC 58.712 43.478 0.00 0.00 0.00 3.86
2361 3433 5.409826 GCAAATCCTACAGTACATATGAGGC 59.590 44.000 10.38 0.00 0.00 4.70
2362 3434 6.648310 CAGCAAATCCTACAGTACATATGAGG 59.352 42.308 10.38 4.59 0.00 3.86
2417 3489 2.376695 CATCAATGGATGCCTTCCCT 57.623 50.000 0.00 0.00 44.03 4.20
2453 3525 2.158914 AGACATCATGCTTACATCGCCA 60.159 45.455 0.00 0.00 32.87 5.69
2537 3609 8.862325 AAATTACACATGACAGGATTACTTCA 57.138 30.769 0.00 0.00 0.00 3.02
2591 3665 3.858247 ACCGTTACTAGAAATGCCTGTC 58.142 45.455 0.00 0.00 0.00 3.51
2679 3753 3.133183 TGCTGCAATGTTTGGCATGATAT 59.867 39.130 0.00 0.00 39.65 1.63
2680 3754 2.496470 TGCTGCAATGTTTGGCATGATA 59.504 40.909 0.00 0.00 39.65 2.15
2681 3755 1.276705 TGCTGCAATGTTTGGCATGAT 59.723 42.857 0.00 0.00 39.65 2.45
2682 3756 0.680061 TGCTGCAATGTTTGGCATGA 59.320 45.000 0.00 0.00 39.65 3.07
2760 3834 6.650120 TCCTTGACTAACCATTCACCTAATC 58.350 40.000 0.00 0.00 0.00 1.75
2984 4058 1.446099 GCAGATCCGCGACTTGTCA 60.446 57.895 8.23 0.00 0.00 3.58
3139 4218 0.389391 ACACAACACAGAGAGTCCCG 59.611 55.000 0.00 0.00 0.00 5.14
3151 4230 4.094294 GCATAGCTTAAATCCGACACAACA 59.906 41.667 0.00 0.00 0.00 3.33
3163 4242 7.411486 AGAGTCTTAGACAGCATAGCTTAAA 57.589 36.000 15.23 0.00 36.40 1.52
3255 4334 2.620115 CACAGCAACACAGAATCCAAGT 59.380 45.455 0.00 0.00 0.00 3.16
3259 4338 0.953727 TGCACAGCAACACAGAATCC 59.046 50.000 0.00 0.00 34.76 3.01
3280 4359 5.630121 TCTGTTGGGTTCATGACACTAAAT 58.370 37.500 0.00 0.00 30.98 1.40
3381 4473 3.758554 CCTAACCAAACACCTCCTCATTG 59.241 47.826 0.00 0.00 0.00 2.82
3462 4554 9.112725 GCCAAAGCCAAAATAGATGATTATTTT 57.887 29.630 0.00 0.00 41.51 1.82
3463 4555 8.488668 AGCCAAAGCCAAAATAGATGATTATTT 58.511 29.630 0.00 0.00 41.25 1.40
3464 4556 8.026396 AGCCAAAGCCAAAATAGATGATTATT 57.974 30.769 0.00 0.00 41.25 1.40
3465 4557 7.607615 AGCCAAAGCCAAAATAGATGATTAT 57.392 32.000 0.00 0.00 41.25 1.28
3466 4558 7.422465 AAGCCAAAGCCAAAATAGATGATTA 57.578 32.000 0.00 0.00 41.25 1.75
3467 4559 5.945144 AGCCAAAGCCAAAATAGATGATT 57.055 34.783 0.00 0.00 41.25 2.57
3468 4560 5.945144 AAGCCAAAGCCAAAATAGATGAT 57.055 34.783 0.00 0.00 41.25 2.45
3469 4561 5.743636 AAAGCCAAAGCCAAAATAGATGA 57.256 34.783 0.00 0.00 41.25 2.92
3470 4562 5.933463 TCAAAAGCCAAAGCCAAAATAGATG 59.067 36.000 0.00 0.00 41.25 2.90
3471 4563 6.014327 TCTCAAAAGCCAAAGCCAAAATAGAT 60.014 34.615 0.00 0.00 41.25 1.98
3472 4564 5.304101 TCTCAAAAGCCAAAGCCAAAATAGA 59.696 36.000 0.00 0.00 41.25 1.98
3473 4565 5.540911 TCTCAAAAGCCAAAGCCAAAATAG 58.459 37.500 0.00 0.00 41.25 1.73
3474 4566 5.543507 TCTCAAAAGCCAAAGCCAAAATA 57.456 34.783 0.00 0.00 41.25 1.40
3475 4567 4.420522 TCTCAAAAGCCAAAGCCAAAAT 57.579 36.364 0.00 0.00 41.25 1.82
3494 4586 5.069516 CAGCAATGGTATAGGCCAAAATTCT 59.930 40.000 5.01 0.00 42.48 2.40
3495 4587 5.163416 ACAGCAATGGTATAGGCCAAAATTC 60.163 40.000 5.01 0.00 42.48 2.17
3496 4588 4.716287 ACAGCAATGGTATAGGCCAAAATT 59.284 37.500 5.01 0.00 42.48 1.82
3497 4589 4.289245 ACAGCAATGGTATAGGCCAAAAT 58.711 39.130 5.01 0.00 42.48 1.82
3498 4590 3.707316 ACAGCAATGGTATAGGCCAAAA 58.293 40.909 5.01 0.00 42.48 2.44
3499 4591 3.380471 ACAGCAATGGTATAGGCCAAA 57.620 42.857 5.01 0.00 42.48 3.28
3500 4592 3.181445 CCTACAGCAATGGTATAGGCCAA 60.181 47.826 5.01 0.00 42.48 4.52
3501 4593 2.371841 CCTACAGCAATGGTATAGGCCA 59.628 50.000 5.01 0.00 43.48 5.36
3502 4594 3.059352 CCTACAGCAATGGTATAGGCC 57.941 52.381 3.68 0.00 0.00 5.19
3527 4619 0.474184 ATTCATTGAGGTAGGGCGGG 59.526 55.000 0.00 0.00 0.00 6.13
3529 4621 0.947244 GCATTCATTGAGGTAGGGCG 59.053 55.000 0.00 0.00 0.00 6.13
3535 4627 2.417651 CCGCATTTGCATTCATTGAGGT 60.418 45.455 3.13 0.00 42.21 3.85
3561 4653 4.163427 TGATTTTTAAGATGGGTGGCCAA 58.837 39.130 7.24 0.00 0.00 4.52
3669 4763 4.295905 TGTAGTCCCCTATTCATCCCTT 57.704 45.455 0.00 0.00 0.00 3.95
3679 4804 6.208840 AGAACCAAAATTTGTAGTCCCCTA 57.791 37.500 4.92 0.00 0.00 3.53
3725 4885 4.681744 TCCTTTGCTTGTTTGCTTAACAG 58.318 39.130 5.38 2.82 46.81 3.16
3756 4928 0.611896 AGGTTTGCCGGCTTGCTAAT 60.612 50.000 29.70 4.57 40.50 1.73
3757 4929 0.037017 TAGGTTTGCCGGCTTGCTAA 59.963 50.000 29.70 10.44 40.50 3.09
3768 4940 2.483188 CGGAGGGAGTATGTAGGTTTGC 60.483 54.545 0.00 0.00 0.00 3.68
3774 4946 2.946785 AGGAACGGAGGGAGTATGTAG 58.053 52.381 0.00 0.00 0.00 2.74
3785 4957 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3788 4960 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3791 4963 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3792 4964 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3794 4966 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3798 4970 7.450074 TCTTGAAATGCCTAGAAAGACAAGTA 58.550 34.615 0.00 0.00 35.34 2.24
3814 4986 7.596494 TGTCTTTCTAGGCATTTCTTGAAATG 58.404 34.615 23.94 23.94 41.74 2.32
3815 4987 7.765695 TGTCTTTCTAGGCATTTCTTGAAAT 57.234 32.000 3.04 3.04 37.66 2.17
3816 4988 7.285401 ACTTGTCTTTCTAGGCATTTCTTGAAA 59.715 33.333 0.00 0.00 35.56 2.69
3818 4990 6.299141 ACTTGTCTTTCTAGGCATTTCTTGA 58.701 36.000 0.00 0.00 35.56 3.02
3819 4991 6.566197 ACTTGTCTTTCTAGGCATTTCTTG 57.434 37.500 0.00 0.00 35.56 3.02
3820 4992 8.870075 AATACTTGTCTTTCTAGGCATTTCTT 57.130 30.769 0.00 0.00 35.56 2.52
3824 4996 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3825 4997 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3826 4998 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3827 4999 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3828 5000 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3829 5001 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3830 5002 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3832 5004 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3833 5005 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3834 5006 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3837 5009 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3838 5010 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3839 5011 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3840 5012 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3841 5013 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3842 5014 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3843 5015 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3846 5018 2.441001 CCTACTACTCCCTCCGTTCCTA 59.559 54.545 0.00 0.00 0.00 2.94
3847 5019 1.214923 CCTACTACTCCCTCCGTTCCT 59.785 57.143 0.00 0.00 0.00 3.36
3848 5020 1.064091 ACCTACTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 0.00 3.62
3850 5022 4.322057 TTTACCTACTACTCCCTCCGTT 57.678 45.455 0.00 0.00 0.00 4.44
3851 5023 4.018050 TCTTTTACCTACTACTCCCTCCGT 60.018 45.833 0.00 0.00 0.00 4.69
3860 5060 6.815142 TCTTTTCCGCATCTTTTACCTACTAC 59.185 38.462 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.