Multiple sequence alignment - TraesCS6D01G096900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G096900 chr6D 100.000 4918 0 0 1 4918 60541519 60546436 0.000000e+00 9082
1 TraesCS6D01G096900 chr6A 92.608 3693 198 32 1250 4917 77533385 77537027 0.000000e+00 5238
2 TraesCS6D01G096900 chr6A 88.451 736 29 17 541 1243 77532589 77533301 0.000000e+00 837
3 TraesCS6D01G096900 chr6A 93.490 384 20 2 1 379 519225223 519225606 2.570000e-157 566
4 TraesCS6D01G096900 chr6A 95.930 172 7 0 372 543 77514616 77514787 3.750000e-71 279
5 TraesCS6D01G096900 chr6B 93.790 1707 81 8 1154 2837 134821106 134822810 0.000000e+00 2542
6 TraesCS6D01G096900 chr6B 91.176 748 52 8 2925 3669 134822839 134823575 0.000000e+00 1003
7 TraesCS6D01G096900 chr6B 88.618 615 26 14 536 1109 134820496 134821107 0.000000e+00 708
8 TraesCS6D01G096900 chr6B 85.604 646 62 19 3731 4349 134823581 134824222 0.000000e+00 649
9 TraesCS6D01G096900 chr6B 93.500 400 18 4 4519 4917 134824305 134824697 5.480000e-164 588
10 TraesCS6D01G096900 chr7A 96.739 368 12 0 1 368 436172822 436173189 9.050000e-172 614
11 TraesCS6D01G096900 chr7A 95.330 364 16 1 1 364 63727054 63727416 1.190000e-160 577
12 TraesCS6D01G096900 chr5D 96.978 364 11 0 1 364 475187814 475187451 3.250000e-171 612
13 TraesCS6D01G096900 chr2D 95.767 378 14 2 1 377 607025814 607025438 4.210000e-170 608
14 TraesCS6D01G096900 chr3D 95.652 368 16 0 1 368 403108903 403109270 4.240000e-165 592
15 TraesCS6D01G096900 chr3D 95.879 364 15 0 1 364 8887158 8886795 1.520000e-164 590
16 TraesCS6D01G096900 chr1D 95.604 364 14 1 1 364 426868363 426868002 2.550000e-162 582
17 TraesCS6D01G096900 chr7D 94.809 366 12 4 1 366 415998573 415998215 9.240000e-157 564


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G096900 chr6D 60541519 60546436 4917 False 9082.0 9082 100.0000 1 4918 1 chr6D.!!$F1 4917
1 TraesCS6D01G096900 chr6A 77532589 77537027 4438 False 3037.5 5238 90.5295 541 4917 2 chr6A.!!$F3 4376
2 TraesCS6D01G096900 chr6B 134820496 134824697 4201 False 1098.0 2542 90.5376 536 4917 5 chr6B.!!$F1 4381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.028505 CGATGCAGAAATTCCCAGCG 59.971 55.000 7.32 7.32 0.00 5.18 F
511 512 0.033991 CTGAGACGAGGAGGGAGGAA 60.034 60.000 0.00 0.00 0.00 3.36 F
1172 1218 0.036765 TCGACCCAAATCAACCCGAG 60.037 55.000 0.00 0.00 0.00 4.63 F
1847 1990 1.110442 TGGGCATTATTCCTTTGGCG 58.890 50.000 0.00 0.00 36.84 5.69 F
3073 3238 1.328680 CATGCTAGTGCGGTCATGTTC 59.671 52.381 0.00 0.00 43.34 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1148 1194 0.320946 GTTGATTTGGGTCGACCGGA 60.321 55.000 27.68 15.97 44.64 5.14 R
1794 1937 0.468029 AACACCCAGCCCTTCAACAG 60.468 55.000 0.00 0.00 0.00 3.16 R
2587 2739 1.067635 GCCCAGCAAAACATCATTCGT 60.068 47.619 0.00 0.00 0.00 3.85 R
3115 3280 1.734465 CTGTCGGAATGGAAAGACTGC 59.266 52.381 0.00 0.00 34.92 4.40 R
4420 4614 0.321298 TGAGCACCCTAAACGCCTTC 60.321 55.000 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.583593 GCAGCCGGCGAGTAGAAG 60.584 66.667 23.20 5.83 0.00 2.85
32 33 2.105128 CAGCCGGCGAGTAGAAGG 59.895 66.667 23.20 0.00 0.00 3.46
33 34 3.148279 AGCCGGCGAGTAGAAGGG 61.148 66.667 23.20 0.00 0.00 3.95
34 35 4.893601 GCCGGCGAGTAGAAGGGC 62.894 72.222 12.58 0.00 0.00 5.19
35 36 3.458163 CCGGCGAGTAGAAGGGCA 61.458 66.667 9.30 0.00 0.00 5.36
36 37 2.105128 CGGCGAGTAGAAGGGCAG 59.895 66.667 0.00 0.00 0.00 4.85
37 38 2.202946 GGCGAGTAGAAGGGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
38 39 2.583593 GCGAGTAGAAGGGCAGCG 60.584 66.667 0.00 0.00 0.00 5.18
39 40 2.885861 CGAGTAGAAGGGCAGCGT 59.114 61.111 0.00 0.00 0.00 5.07
40 41 1.226717 CGAGTAGAAGGGCAGCGTC 60.227 63.158 0.00 0.00 0.00 5.19
41 42 1.226717 GAGTAGAAGGGCAGCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
42 43 2.202756 GTAGAAGGGCAGCGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
43 44 4.143333 TAGAAGGGCAGCGTCGGC 62.143 66.667 0.00 0.00 40.37 5.54
58 59 4.208686 GGCTCCGTCCCGTGCTAG 62.209 72.222 0.00 0.00 0.00 3.42
59 60 4.208686 GCTCCGTCCCGTGCTAGG 62.209 72.222 0.00 0.00 0.00 3.02
60 61 2.439701 CTCCGTCCCGTGCTAGGA 60.440 66.667 0.00 0.00 0.00 2.94
64 65 2.799371 GTCCCGTGCTAGGACGAG 59.201 66.667 34.60 24.18 44.16 4.18
65 66 3.138798 TCCCGTGCTAGGACGAGC 61.139 66.667 34.60 1.42 42.10 5.03
72 73 1.353804 GCTAGGACGAGCAGAGACG 59.646 63.158 0.00 0.00 42.36 4.18
73 74 1.090625 GCTAGGACGAGCAGAGACGA 61.091 60.000 0.00 0.00 42.36 4.20
74 75 0.934496 CTAGGACGAGCAGAGACGAG 59.066 60.000 0.00 0.00 0.00 4.18
75 76 0.535797 TAGGACGAGCAGAGACGAGA 59.464 55.000 0.00 0.00 0.00 4.04
76 77 0.321741 AGGACGAGCAGAGACGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
77 78 0.179184 GGACGAGCAGAGACGAGAAC 60.179 60.000 0.00 0.00 0.00 3.01
78 79 0.519586 GACGAGCAGAGACGAGAACG 60.520 60.000 0.00 0.00 45.75 3.95
79 80 1.865622 CGAGCAGAGACGAGAACGC 60.866 63.158 0.00 0.00 43.96 4.84
80 81 1.210413 GAGCAGAGACGAGAACGCA 59.790 57.895 0.00 0.00 43.96 5.24
81 82 0.179150 GAGCAGAGACGAGAACGCAT 60.179 55.000 0.00 0.00 43.96 4.73
82 83 1.064208 GAGCAGAGACGAGAACGCATA 59.936 52.381 0.00 0.00 43.96 3.14
83 84 1.064803 AGCAGAGACGAGAACGCATAG 59.935 52.381 0.00 0.00 43.96 2.23
84 85 1.862008 GCAGAGACGAGAACGCATAGG 60.862 57.143 0.00 0.00 43.96 2.57
85 86 1.671328 CAGAGACGAGAACGCATAGGA 59.329 52.381 0.00 0.00 43.96 2.94
86 87 1.944024 AGAGACGAGAACGCATAGGAG 59.056 52.381 0.00 0.00 43.96 3.69
87 88 1.671845 GAGACGAGAACGCATAGGAGT 59.328 52.381 0.00 0.00 43.96 3.85
88 89 1.402259 AGACGAGAACGCATAGGAGTG 59.598 52.381 0.00 0.00 43.96 3.51
89 90 0.456221 ACGAGAACGCATAGGAGTGG 59.544 55.000 0.00 0.00 43.96 4.00
90 91 0.872021 CGAGAACGCATAGGAGTGGC 60.872 60.000 0.00 0.00 0.00 5.01
91 92 0.530870 GAGAACGCATAGGAGTGGCC 60.531 60.000 0.00 0.00 0.00 5.36
92 93 1.883084 GAACGCATAGGAGTGGCCG 60.883 63.158 0.00 0.00 43.43 6.13
93 94 4.530857 ACGCATAGGAGTGGCCGC 62.531 66.667 8.71 8.71 43.43 6.53
127 128 4.845580 CTGCAGCCCCTACAGCGG 62.846 72.222 0.00 0.00 34.64 5.52
157 158 2.185608 GGGACGAGCAGAGGAAGC 59.814 66.667 0.00 0.00 0.00 3.86
158 159 2.202676 GGACGAGCAGAGGAAGCG 60.203 66.667 0.00 0.00 37.01 4.68
159 160 2.202676 GACGAGCAGAGGAAGCGG 60.203 66.667 0.00 0.00 37.01 5.52
160 161 2.676822 ACGAGCAGAGGAAGCGGA 60.677 61.111 0.00 0.00 37.01 5.54
161 162 2.103934 CGAGCAGAGGAAGCGGAG 59.896 66.667 0.00 0.00 37.01 4.63
174 175 3.755404 CGGAGCAGTTCGTCTTCG 58.245 61.111 0.00 0.00 38.55 3.79
175 176 2.437343 CGGAGCAGTTCGTCTTCGC 61.437 63.158 0.00 0.00 36.96 4.70
176 177 2.437343 GGAGCAGTTCGTCTTCGCG 61.437 63.158 0.00 0.00 36.96 5.87
177 178 3.060663 GAGCAGTTCGTCTTCGCGC 62.061 63.158 0.00 0.00 36.96 6.86
178 179 3.106407 GCAGTTCGTCTTCGCGCT 61.106 61.111 5.56 0.00 36.96 5.92
179 180 2.658707 GCAGTTCGTCTTCGCGCTT 61.659 57.895 5.56 0.00 36.96 4.68
180 181 1.412606 CAGTTCGTCTTCGCGCTTC 59.587 57.895 5.56 0.00 36.96 3.86
181 182 1.007734 AGTTCGTCTTCGCGCTTCA 60.008 52.632 5.56 0.00 36.96 3.02
182 183 0.596600 AGTTCGTCTTCGCGCTTCAA 60.597 50.000 5.56 0.00 36.96 2.69
183 184 0.231279 GTTCGTCTTCGCGCTTCAAA 59.769 50.000 5.56 0.00 36.96 2.69
184 185 1.136336 GTTCGTCTTCGCGCTTCAAAT 60.136 47.619 5.56 0.00 36.96 2.32
185 186 1.144969 TCGTCTTCGCGCTTCAAATT 58.855 45.000 5.56 0.00 36.96 1.82
186 187 1.136363 TCGTCTTCGCGCTTCAAATTG 60.136 47.619 5.56 0.00 36.96 2.32
187 188 1.398451 CGTCTTCGCGCTTCAAATTGT 60.398 47.619 5.56 0.00 0.00 2.71
188 189 2.234187 GTCTTCGCGCTTCAAATTGTC 58.766 47.619 5.56 0.00 0.00 3.18
189 190 1.196808 TCTTCGCGCTTCAAATTGTCC 59.803 47.619 5.56 0.00 0.00 4.02
190 191 0.947960 TTCGCGCTTCAAATTGTCCA 59.052 45.000 5.56 0.00 0.00 4.02
191 192 0.516877 TCGCGCTTCAAATTGTCCAG 59.483 50.000 5.56 0.00 0.00 3.86
192 193 1.067199 CGCGCTTCAAATTGTCCAGC 61.067 55.000 5.56 0.00 0.00 4.85
193 194 3.005823 CGCTTCAAATTGTCCAGCG 57.994 52.632 17.26 17.26 46.46 5.18
194 195 1.067199 CGCTTCAAATTGTCCAGCGC 61.067 55.000 18.22 0.00 45.97 5.92
195 196 1.067199 GCTTCAAATTGTCCAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
196 197 1.067199 CTTCAAATTGTCCAGCGCGC 61.067 55.000 26.66 26.66 0.00 6.86
197 198 1.514678 TTCAAATTGTCCAGCGCGCT 61.515 50.000 31.32 31.32 0.00 5.92
198 199 1.798725 CAAATTGTCCAGCGCGCTG 60.799 57.895 45.54 45.54 43.26 5.18
199 200 2.260869 AAATTGTCCAGCGCGCTGT 61.261 52.632 46.97 32.38 42.15 4.40
200 201 0.953471 AAATTGTCCAGCGCGCTGTA 60.953 50.000 46.97 37.16 42.15 2.74
201 202 1.635663 AATTGTCCAGCGCGCTGTAC 61.636 55.000 46.97 43.31 42.15 2.90
215 216 3.795342 GTACGCCGCGCACCAAAT 61.795 61.111 13.88 0.00 0.00 2.32
216 217 2.125633 TACGCCGCGCACCAAATA 60.126 55.556 13.88 0.00 0.00 1.40
217 218 1.521906 TACGCCGCGCACCAAATAT 60.522 52.632 13.88 0.00 0.00 1.28
218 219 1.492319 TACGCCGCGCACCAAATATC 61.492 55.000 13.88 0.00 0.00 1.63
219 220 2.331451 GCCGCGCACCAAATATCC 59.669 61.111 8.75 0.00 0.00 2.59
220 221 3.030652 CCGCGCACCAAATATCCC 58.969 61.111 8.75 0.00 0.00 3.85
221 222 2.631428 CGCGCACCAAATATCCCG 59.369 61.111 8.75 0.00 0.00 5.14
222 223 2.331451 GCGCACCAAATATCCCGC 59.669 61.111 0.30 0.00 34.50 6.13
223 224 2.631428 CGCACCAAATATCCCGCG 59.369 61.111 0.00 0.00 36.47 6.46
224 225 2.177580 CGCACCAAATATCCCGCGT 61.178 57.895 4.92 0.00 38.03 6.01
225 226 1.355210 GCACCAAATATCCCGCGTG 59.645 57.895 4.92 0.00 0.00 5.34
226 227 1.355210 CACCAAATATCCCGCGTGC 59.645 57.895 4.92 0.00 0.00 5.34
227 228 2.177580 ACCAAATATCCCGCGTGCG 61.178 57.895 4.92 7.38 39.44 5.34
228 229 1.885388 CCAAATATCCCGCGTGCGA 60.885 57.895 16.91 0.00 42.83 5.10
229 230 1.227999 CCAAATATCCCGCGTGCGAT 61.228 55.000 16.91 4.71 42.83 4.58
230 231 0.110688 CAAATATCCCGCGTGCGATG 60.111 55.000 16.91 6.61 42.83 3.84
231 232 1.841663 AAATATCCCGCGTGCGATGC 61.842 55.000 16.91 0.00 42.83 3.91
232 233 2.987282 AATATCCCGCGTGCGATGCA 62.987 55.000 16.91 0.00 42.83 3.96
236 237 3.787676 CCGCGTGCGATGCAGAAA 61.788 61.111 16.91 0.00 40.08 2.52
237 238 2.400798 CGCGTGCGATGCAGAAAT 59.599 55.556 8.89 0.00 40.08 2.17
238 239 1.226101 CGCGTGCGATGCAGAAATT 60.226 52.632 8.89 0.00 40.08 1.82
239 240 1.189989 CGCGTGCGATGCAGAAATTC 61.190 55.000 8.89 0.00 40.08 2.17
240 241 0.863119 GCGTGCGATGCAGAAATTCC 60.863 55.000 0.00 0.00 40.08 3.01
241 242 0.248215 CGTGCGATGCAGAAATTCCC 60.248 55.000 0.00 0.00 40.08 3.97
242 243 0.810648 GTGCGATGCAGAAATTCCCA 59.189 50.000 0.00 0.00 40.08 4.37
243 244 1.097232 TGCGATGCAGAAATTCCCAG 58.903 50.000 0.00 0.00 33.32 4.45
244 245 0.248784 GCGATGCAGAAATTCCCAGC 60.249 55.000 0.00 0.00 0.00 4.85
245 246 0.028505 CGATGCAGAAATTCCCAGCG 59.971 55.000 7.32 7.32 0.00 5.18
246 247 0.248784 GATGCAGAAATTCCCAGCGC 60.249 55.000 0.00 0.00 0.00 5.92
247 248 1.669999 ATGCAGAAATTCCCAGCGCC 61.670 55.000 2.29 0.00 0.00 6.53
248 249 3.068729 GCAGAAATTCCCAGCGCCC 62.069 63.158 2.29 0.00 0.00 6.13
249 250 1.379044 CAGAAATTCCCAGCGCCCT 60.379 57.895 2.29 0.00 0.00 5.19
250 251 1.379044 AGAAATTCCCAGCGCCCTG 60.379 57.895 2.29 0.00 38.85 4.45
258 259 2.194056 CAGCGCCCTGGATGGATT 59.806 61.111 2.29 0.00 38.35 3.01
259 260 1.454479 CAGCGCCCTGGATGGATTT 60.454 57.895 2.29 0.00 38.35 2.17
260 261 1.039233 CAGCGCCCTGGATGGATTTT 61.039 55.000 2.29 0.00 38.35 1.82
261 262 0.550914 AGCGCCCTGGATGGATTTTA 59.449 50.000 2.29 0.00 38.35 1.52
262 263 0.668535 GCGCCCTGGATGGATTTTAC 59.331 55.000 0.00 0.00 38.35 2.01
263 264 2.021723 GCGCCCTGGATGGATTTTACA 61.022 52.381 0.00 0.00 38.35 2.41
264 265 1.949525 CGCCCTGGATGGATTTTACAG 59.050 52.381 0.00 0.00 38.35 2.74
265 266 1.683385 GCCCTGGATGGATTTTACAGC 59.317 52.381 0.00 0.00 38.35 4.40
266 267 1.949525 CCCTGGATGGATTTTACAGCG 59.050 52.381 0.00 0.00 38.35 5.18
267 268 2.643551 CCTGGATGGATTTTACAGCGT 58.356 47.619 0.00 0.00 38.35 5.07
268 269 2.355756 CCTGGATGGATTTTACAGCGTG 59.644 50.000 0.00 0.00 38.35 5.34
269 270 1.742831 TGGATGGATTTTACAGCGTGC 59.257 47.619 0.00 0.00 0.00 5.34
270 271 2.017049 GGATGGATTTTACAGCGTGCT 58.983 47.619 0.00 0.00 0.00 4.40
279 280 2.732094 CAGCGTGCTGGCTTTTGC 60.732 61.111 14.00 0.00 42.53 3.68
289 290 4.522460 GCTTTTGCAGCGTCTGTC 57.478 55.556 8.32 2.79 46.58 3.51
290 291 1.439365 GCTTTTGCAGCGTCTGTCG 60.439 57.895 8.32 0.00 46.58 4.35
291 292 1.831389 GCTTTTGCAGCGTCTGTCGA 61.831 55.000 8.32 0.00 46.58 4.20
292 293 0.581529 CTTTTGCAGCGTCTGTCGAA 59.418 50.000 8.32 4.97 42.86 3.71
293 294 0.581529 TTTTGCAGCGTCTGTCGAAG 59.418 50.000 8.32 0.00 42.86 3.79
294 295 0.249280 TTTGCAGCGTCTGTCGAAGA 60.249 50.000 8.32 0.00 42.86 2.87
295 296 0.038251 TTGCAGCGTCTGTCGAAGAT 60.038 50.000 8.32 0.00 40.67 2.40
296 297 0.733909 TGCAGCGTCTGTCGAAGATG 60.734 55.000 10.61 10.61 43.79 2.90
300 301 2.950877 CGTCTGTCGAAGATGCTCC 58.049 57.895 0.00 0.00 40.67 4.70
301 302 0.863538 CGTCTGTCGAAGATGCTCCG 60.864 60.000 0.00 0.00 40.67 4.63
302 303 1.139734 TCTGTCGAAGATGCTCCGC 59.860 57.895 0.00 0.00 40.67 5.54
303 304 2.202610 TGTCGAAGATGCTCCGCG 60.203 61.111 0.00 0.00 40.67 6.46
304 305 3.621394 GTCGAAGATGCTCCGCGC 61.621 66.667 0.00 0.00 40.67 6.86
308 309 4.207281 AAGATGCTCCGCGCGCTA 62.207 61.111 30.48 16.24 43.27 4.26
309 310 3.716539 AAGATGCTCCGCGCGCTAA 62.717 57.895 30.48 15.83 43.27 3.09
310 311 3.261951 GATGCTCCGCGCGCTAAA 61.262 61.111 30.48 13.09 43.27 1.85
311 312 2.588877 ATGCTCCGCGCGCTAAAT 60.589 55.556 30.48 12.39 43.27 1.40
312 313 2.105960 GATGCTCCGCGCGCTAAATT 62.106 55.000 30.48 9.35 43.27 1.82
313 314 0.878523 ATGCTCCGCGCGCTAAATTA 60.879 50.000 30.48 11.33 43.27 1.40
314 315 1.084935 TGCTCCGCGCGCTAAATTAA 61.085 50.000 30.48 5.56 43.27 1.40
315 316 0.653610 GCTCCGCGCGCTAAATTAAC 60.654 55.000 30.48 6.30 0.00 2.01
316 317 0.381428 CTCCGCGCGCTAAATTAACG 60.381 55.000 30.48 9.83 0.00 3.18
317 318 1.077645 TCCGCGCGCTAAATTAACGT 61.078 50.000 30.48 0.00 0.00 3.99
318 319 0.247379 CCGCGCGCTAAATTAACGTT 60.247 50.000 30.48 5.88 0.00 3.99
319 320 1.516208 CGCGCGCTAAATTAACGTTT 58.484 45.000 30.48 0.00 0.00 3.60
320 321 1.899971 CGCGCGCTAAATTAACGTTTT 59.100 42.857 30.48 0.00 0.00 2.43
321 322 2.336189 CGCGCGCTAAATTAACGTTTTT 59.664 40.909 30.48 4.50 0.00 1.94
353 354 3.748298 GCTACTTTTAGCGCCTCTTTTG 58.252 45.455 2.29 0.00 41.50 2.44
354 355 3.426292 GCTACTTTTAGCGCCTCTTTTGG 60.426 47.826 2.29 0.00 41.50 3.28
355 356 2.858745 ACTTTTAGCGCCTCTTTTGGA 58.141 42.857 2.29 0.00 0.00 3.53
356 357 2.814336 ACTTTTAGCGCCTCTTTTGGAG 59.186 45.455 2.29 0.00 41.51 3.86
357 358 2.851263 TTTAGCGCCTCTTTTGGAGA 57.149 45.000 2.29 0.00 44.45 3.71
358 359 3.350219 TTTAGCGCCTCTTTTGGAGAT 57.650 42.857 2.29 0.00 44.45 2.75
359 360 2.315925 TAGCGCCTCTTTTGGAGATG 57.684 50.000 2.29 0.00 44.45 2.90
360 361 1.028868 AGCGCCTCTTTTGGAGATGC 61.029 55.000 2.29 0.00 44.45 3.91
361 362 1.028868 GCGCCTCTTTTGGAGATGCT 61.029 55.000 0.00 0.00 44.45 3.79
362 363 1.012841 CGCCTCTTTTGGAGATGCTC 58.987 55.000 0.00 0.00 44.45 4.26
363 364 1.406614 CGCCTCTTTTGGAGATGCTCT 60.407 52.381 0.00 0.00 44.45 4.09
364 365 2.720915 GCCTCTTTTGGAGATGCTCTT 58.279 47.619 0.00 0.00 44.45 2.85
365 366 3.679917 CGCCTCTTTTGGAGATGCTCTTA 60.680 47.826 0.00 0.00 44.45 2.10
366 367 3.876320 GCCTCTTTTGGAGATGCTCTTAG 59.124 47.826 0.00 0.00 44.45 2.18
367 368 4.383552 GCCTCTTTTGGAGATGCTCTTAGA 60.384 45.833 0.00 0.00 44.45 2.10
368 369 5.687177 GCCTCTTTTGGAGATGCTCTTAGAT 60.687 44.000 0.00 0.00 44.45 1.98
369 370 5.759273 CCTCTTTTGGAGATGCTCTTAGATG 59.241 44.000 0.00 0.00 44.45 2.90
370 371 6.305272 TCTTTTGGAGATGCTCTTAGATGT 57.695 37.500 0.00 0.00 0.00 3.06
371 372 6.111382 TCTTTTGGAGATGCTCTTAGATGTG 58.889 40.000 0.00 0.00 0.00 3.21
372 373 5.682234 TTTGGAGATGCTCTTAGATGTGA 57.318 39.130 0.00 0.00 0.00 3.58
373 374 5.682234 TTGGAGATGCTCTTAGATGTGAA 57.318 39.130 0.00 0.00 0.00 3.18
374 375 5.273674 TGGAGATGCTCTTAGATGTGAAG 57.726 43.478 0.00 0.00 0.00 3.02
375 376 4.958581 TGGAGATGCTCTTAGATGTGAAGA 59.041 41.667 0.00 0.00 0.00 2.87
382 383 4.362279 CTCTTAGATGTGAAGAGCTCAGC 58.638 47.826 17.77 7.72 42.48 4.26
383 384 3.131933 TCTTAGATGTGAAGAGCTCAGCC 59.868 47.826 17.77 4.78 33.60 4.85
384 385 1.273759 AGATGTGAAGAGCTCAGCCA 58.726 50.000 17.77 7.55 33.60 4.75
385 386 1.838715 AGATGTGAAGAGCTCAGCCAT 59.161 47.619 17.77 11.75 33.60 4.40
386 387 2.239150 AGATGTGAAGAGCTCAGCCATT 59.761 45.455 17.77 0.00 33.60 3.16
387 388 2.105006 TGTGAAGAGCTCAGCCATTC 57.895 50.000 17.77 10.91 33.60 2.67
388 389 1.348696 TGTGAAGAGCTCAGCCATTCA 59.651 47.619 17.77 13.49 33.60 2.57
389 390 1.736681 GTGAAGAGCTCAGCCATTCAC 59.263 52.381 22.22 22.22 42.62 3.18
390 391 1.339438 TGAAGAGCTCAGCCATTCACC 60.339 52.381 17.77 0.00 31.64 4.02
391 392 0.034670 AAGAGCTCAGCCATTCACCC 60.035 55.000 17.77 0.00 0.00 4.61
392 393 1.817099 GAGCTCAGCCATTCACCCG 60.817 63.158 9.40 0.00 0.00 5.28
393 394 2.825836 GCTCAGCCATTCACCCGG 60.826 66.667 0.00 0.00 0.00 5.73
394 395 2.124570 CTCAGCCATTCACCCGGG 60.125 66.667 22.25 22.25 0.00 5.73
406 407 4.183858 CCCGGGCCGCCATTAGAA 62.184 66.667 23.20 0.00 0.00 2.10
407 408 2.900337 CCGGGCCGCCATTAGAAC 60.900 66.667 23.20 0.00 0.00 3.01
408 409 2.189521 CGGGCCGCCATTAGAACT 59.810 61.111 15.42 0.00 0.00 3.01
409 410 1.444250 CGGGCCGCCATTAGAACTA 59.556 57.895 15.42 0.00 0.00 2.24
410 411 0.034896 CGGGCCGCCATTAGAACTAT 59.965 55.000 15.42 0.00 0.00 2.12
411 412 1.523758 GGGCCGCCATTAGAACTATG 58.476 55.000 12.58 0.00 0.00 2.23
412 413 0.875059 GGCCGCCATTAGAACTATGC 59.125 55.000 3.91 0.00 0.00 3.14
413 414 1.593196 GCCGCCATTAGAACTATGCA 58.407 50.000 0.00 0.00 0.00 3.96
414 415 2.154462 GCCGCCATTAGAACTATGCAT 58.846 47.619 3.79 3.79 0.00 3.96
415 416 2.554032 GCCGCCATTAGAACTATGCATT 59.446 45.455 3.54 0.00 0.00 3.56
416 417 3.004734 GCCGCCATTAGAACTATGCATTT 59.995 43.478 3.54 0.00 0.00 2.32
417 418 4.539870 CCGCCATTAGAACTATGCATTTG 58.460 43.478 3.54 0.60 0.00 2.32
418 419 3.976942 CGCCATTAGAACTATGCATTTGC 59.023 43.478 3.54 0.00 42.50 3.68
419 420 4.261322 CGCCATTAGAACTATGCATTTGCT 60.261 41.667 3.54 0.00 42.66 3.91
420 421 5.049474 CGCCATTAGAACTATGCATTTGCTA 60.049 40.000 3.54 0.00 42.66 3.49
421 422 6.513230 CGCCATTAGAACTATGCATTTGCTAA 60.513 38.462 3.54 7.68 42.66 3.09
422 423 7.202526 GCCATTAGAACTATGCATTTGCTAAA 58.797 34.615 3.54 0.00 42.66 1.85
423 424 7.869429 GCCATTAGAACTATGCATTTGCTAAAT 59.131 33.333 3.54 0.00 42.66 1.40
424 425 9.754382 CCATTAGAACTATGCATTTGCTAAATT 57.246 29.630 3.54 0.00 42.66 1.82
428 429 8.922058 AGAACTATGCATTTGCTAAATTTCAG 57.078 30.769 3.54 0.00 42.66 3.02
429 430 8.526147 AGAACTATGCATTTGCTAAATTTCAGT 58.474 29.630 3.54 0.00 42.66 3.41
430 431 8.470040 AACTATGCATTTGCTAAATTTCAGTG 57.530 30.769 3.54 0.00 42.66 3.66
431 432 7.037438 ACTATGCATTTGCTAAATTTCAGTGG 58.963 34.615 3.54 0.00 42.66 4.00
432 433 3.995705 TGCATTTGCTAAATTTCAGTGGC 59.004 39.130 3.94 0.00 42.66 5.01
433 434 3.371898 GCATTTGCTAAATTTCAGTGGCC 59.628 43.478 0.00 0.00 38.21 5.36
434 435 4.824289 CATTTGCTAAATTTCAGTGGCCT 58.176 39.130 3.32 0.00 0.00 5.19
435 436 3.940209 TTGCTAAATTTCAGTGGCCTG 57.060 42.857 3.32 0.00 40.25 4.85
436 437 3.153369 TGCTAAATTTCAGTGGCCTGA 57.847 42.857 3.32 0.00 45.95 3.86
443 444 3.892633 TCAGTGGCCTGAAAACACA 57.107 47.368 3.32 0.00 44.67 3.72
444 445 1.388547 TCAGTGGCCTGAAAACACAC 58.611 50.000 3.32 0.00 44.67 3.82
445 446 1.064758 TCAGTGGCCTGAAAACACACT 60.065 47.619 3.32 0.00 44.67 3.55
446 447 1.750778 CAGTGGCCTGAAAACACACTT 59.249 47.619 3.32 0.00 41.50 3.16
447 448 2.024414 AGTGGCCTGAAAACACACTTC 58.976 47.619 3.32 0.00 39.16 3.01
448 449 1.021202 TGGCCTGAAAACACACTTCG 58.979 50.000 3.32 0.00 0.00 3.79
449 450 1.021968 GGCCTGAAAACACACTTCGT 58.978 50.000 0.00 0.00 0.00 3.85
460 461 3.740044 CACACTTCGTGTCAGTTGTTT 57.260 42.857 0.00 0.00 43.92 2.83
461 462 4.078363 CACACTTCGTGTCAGTTGTTTT 57.922 40.909 0.00 0.00 43.92 2.43
462 463 4.472286 CACACTTCGTGTCAGTTGTTTTT 58.528 39.130 0.00 0.00 43.92 1.94
463 464 4.320690 CACACTTCGTGTCAGTTGTTTTTG 59.679 41.667 0.00 0.00 43.92 2.44
464 465 4.214545 ACACTTCGTGTCAGTTGTTTTTGA 59.785 37.500 0.00 0.00 43.92 2.69
465 466 5.106317 ACACTTCGTGTCAGTTGTTTTTGAT 60.106 36.000 0.00 0.00 43.92 2.57
466 467 5.227805 CACTTCGTGTCAGTTGTTTTTGATG 59.772 40.000 0.00 0.00 0.00 3.07
467 468 5.123186 ACTTCGTGTCAGTTGTTTTTGATGA 59.877 36.000 0.00 0.00 0.00 2.92
468 469 5.553290 TCGTGTCAGTTGTTTTTGATGAA 57.447 34.783 0.00 0.00 0.00 2.57
469 470 5.944013 TCGTGTCAGTTGTTTTTGATGAAA 58.056 33.333 0.00 0.00 0.00 2.69
470 471 6.382608 TCGTGTCAGTTGTTTTTGATGAAAA 58.617 32.000 0.00 0.00 34.93 2.29
471 472 6.863645 TCGTGTCAGTTGTTTTTGATGAAAAA 59.136 30.769 0.00 0.00 38.86 1.94
472 473 7.543868 TCGTGTCAGTTGTTTTTGATGAAAAAT 59.456 29.630 6.09 0.00 41.83 1.82
473 474 8.167985 CGTGTCAGTTGTTTTTGATGAAAAATT 58.832 29.630 6.09 0.00 41.83 1.82
474 475 9.476761 GTGTCAGTTGTTTTTGATGAAAAATTC 57.523 29.630 6.09 1.29 41.83 2.17
475 476 9.434420 TGTCAGTTGTTTTTGATGAAAAATTCT 57.566 25.926 6.09 3.30 41.83 2.40
476 477 9.693157 GTCAGTTGTTTTTGATGAAAAATTCTG 57.307 29.630 6.09 13.17 41.83 3.02
477 478 9.650539 TCAGTTGTTTTTGATGAAAAATTCTGA 57.349 25.926 19.42 19.42 41.83 3.27
480 481 9.706846 GTTGTTTTTGATGAAAAATTCTGAAGG 57.293 29.630 6.09 0.00 41.83 3.46
481 482 7.918643 TGTTTTTGATGAAAAATTCTGAAGGC 58.081 30.769 6.09 0.00 41.83 4.35
482 483 7.551974 TGTTTTTGATGAAAAATTCTGAAGGCA 59.448 29.630 6.09 0.00 41.83 4.75
483 484 7.718272 TTTTGATGAAAAATTCTGAAGGCAG 57.282 32.000 0.00 0.00 36.86 4.85
484 485 5.395682 TGATGAAAAATTCTGAAGGCAGG 57.604 39.130 0.00 0.00 42.53 4.85
485 486 3.665745 TGAAAAATTCTGAAGGCAGGC 57.334 42.857 0.00 0.00 42.53 4.85
486 487 2.299867 TGAAAAATTCTGAAGGCAGGCC 59.700 45.455 0.97 0.97 42.53 5.19
487 488 1.269958 AAAATTCTGAAGGCAGGCCC 58.730 50.000 6.70 0.00 42.53 5.80
488 489 0.967380 AAATTCTGAAGGCAGGCCCG 60.967 55.000 6.70 0.00 42.53 6.13
489 490 2.843912 AATTCTGAAGGCAGGCCCGG 62.844 60.000 6.70 0.00 42.53 5.73
504 505 3.522731 CGGGGCTGAGACGAGGAG 61.523 72.222 0.00 0.00 0.00 3.69
505 506 3.151022 GGGGCTGAGACGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
506 507 3.151022 GGGCTGAGACGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
507 508 2.043852 GGCTGAGACGAGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
508 509 2.124693 GGCTGAGACGAGGAGGGAG 61.125 68.421 0.00 0.00 0.00 4.30
509 510 2.124693 GCTGAGACGAGGAGGGAGG 61.125 68.421 0.00 0.00 0.00 4.30
510 511 1.610327 CTGAGACGAGGAGGGAGGA 59.390 63.158 0.00 0.00 0.00 3.71
511 512 0.033991 CTGAGACGAGGAGGGAGGAA 60.034 60.000 0.00 0.00 0.00 3.36
512 513 0.033991 TGAGACGAGGAGGGAGGAAG 60.034 60.000 0.00 0.00 0.00 3.46
513 514 0.256464 GAGACGAGGAGGGAGGAAGA 59.744 60.000 0.00 0.00 0.00 2.87
514 515 0.257616 AGACGAGGAGGGAGGAAGAG 59.742 60.000 0.00 0.00 0.00 2.85
515 516 0.753848 GACGAGGAGGGAGGAAGAGG 60.754 65.000 0.00 0.00 0.00 3.69
516 517 1.456705 CGAGGAGGGAGGAAGAGGG 60.457 68.421 0.00 0.00 0.00 4.30
517 518 1.707200 GAGGAGGGAGGAAGAGGGT 59.293 63.158 0.00 0.00 0.00 4.34
518 519 0.043485 GAGGAGGGAGGAAGAGGGTT 59.957 60.000 0.00 0.00 0.00 4.11
519 520 0.252927 AGGAGGGAGGAAGAGGGTTG 60.253 60.000 0.00 0.00 0.00 3.77
520 521 0.252742 GGAGGGAGGAAGAGGGTTGA 60.253 60.000 0.00 0.00 0.00 3.18
521 522 0.906066 GAGGGAGGAAGAGGGTTGAC 59.094 60.000 0.00 0.00 0.00 3.18
522 523 0.905337 AGGGAGGAAGAGGGTTGACG 60.905 60.000 0.00 0.00 0.00 4.35
523 524 1.192803 GGGAGGAAGAGGGTTGACGT 61.193 60.000 0.00 0.00 0.00 4.34
524 525 0.246910 GGAGGAAGAGGGTTGACGTC 59.753 60.000 9.11 9.11 0.00 4.34
525 526 1.258676 GAGGAAGAGGGTTGACGTCT 58.741 55.000 17.92 0.00 45.70 4.18
526 527 0.969894 AGGAAGAGGGTTGACGTCTG 59.030 55.000 17.92 0.00 43.13 3.51
527 528 0.966920 GGAAGAGGGTTGACGTCTGA 59.033 55.000 17.92 2.36 43.13 3.27
528 529 1.336980 GGAAGAGGGTTGACGTCTGAC 60.337 57.143 17.92 14.68 43.13 3.51
529 530 0.680061 AAGAGGGTTGACGTCTGACC 59.320 55.000 24.60 24.60 43.13 4.02
530 531 0.469331 AGAGGGTTGACGTCTGACCA 60.469 55.000 29.79 6.87 42.39 4.02
531 532 0.319641 GAGGGTTGACGTCTGACCAC 60.320 60.000 29.79 22.39 35.11 4.16
532 533 1.663702 GGGTTGACGTCTGACCACG 60.664 63.158 29.79 0.00 45.65 4.94
533 534 1.663702 GGTTGACGTCTGACCACGG 60.664 63.158 26.46 0.00 44.41 4.94
534 535 1.663702 GTTGACGTCTGACCACGGG 60.664 63.158 17.92 0.00 44.41 5.28
535 536 3.509137 TTGACGTCTGACCACGGGC 62.509 63.158 17.92 0.00 44.41 6.13
536 537 3.986006 GACGTCTGACCACGGGCA 61.986 66.667 8.70 0.00 44.41 5.36
537 538 4.295119 ACGTCTGACCACGGGCAC 62.295 66.667 1.55 0.00 44.41 5.01
555 556 1.820906 CGGTGATACGGAGGGTCGA 60.821 63.158 0.00 0.00 0.00 4.20
769 795 4.139234 GGTGCCGTACCCGTCTCC 62.139 72.222 0.00 0.00 44.15 3.71
813 839 0.254747 CTCACCTCTCGTCCTCCTCT 59.745 60.000 0.00 0.00 0.00 3.69
840 866 4.694760 ATGATTCCTTCATGGATGACGA 57.305 40.909 0.00 0.00 45.68 4.20
870 896 6.839657 CCTAACTAGGATCAGGTTTTAGGAGA 59.160 42.308 11.31 0.00 46.63 3.71
872 898 9.589461 CTAACTAGGATCAGGTTTTAGGAGATA 57.411 37.037 0.00 0.00 0.00 1.98
921 957 9.674068 GAGATCAGGTAATATTAATTTCTCCCC 57.326 37.037 0.00 0.00 0.00 4.81
934 970 0.192064 TCTCCCCATCATCTCCCTCC 59.808 60.000 0.00 0.00 0.00 4.30
936 972 1.434773 CTCCCCATCATCTCCCTCCTA 59.565 57.143 0.00 0.00 0.00 2.94
942 978 4.019501 CCCATCATCTCCCTCCTATTCTTG 60.020 50.000 0.00 0.00 0.00 3.02
1056 1101 4.697756 CTCTTGCCCGGCCGTCAA 62.698 66.667 26.12 24.23 0.00 3.18
1061 1106 3.292159 GCCCGGCCGTCAAAACTT 61.292 61.111 26.12 0.00 0.00 2.66
1080 1125 2.762535 TCCATCAGGTTTCGTTCTCC 57.237 50.000 0.00 0.00 35.89 3.71
1112 1158 4.895297 TCCTTTCCTGTTCTGCATTCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
1134 1180 6.660887 TTTTGTTTTTCCTGTTCTGCATTC 57.339 33.333 0.00 0.00 0.00 2.67
1135 1181 5.596836 TTGTTTTTCCTGTTCTGCATTCT 57.403 34.783 0.00 0.00 0.00 2.40
1136 1182 4.935702 TGTTTTTCCTGTTCTGCATTCTG 58.064 39.130 0.00 0.00 0.00 3.02
1137 1183 4.402155 TGTTTTTCCTGTTCTGCATTCTGT 59.598 37.500 0.00 0.00 0.00 3.41
1138 1184 5.592282 TGTTTTTCCTGTTCTGCATTCTGTA 59.408 36.000 0.00 0.00 0.00 2.74
1139 1185 5.947228 TTTTCCTGTTCTGCATTCTGTAG 57.053 39.130 0.00 0.00 0.00 2.74
1148 1194 9.155975 CTGTTCTGCATTCTGTAGTAATTACTT 57.844 33.333 22.66 7.93 37.73 2.24
1172 1218 0.036765 TCGACCCAAATCAACCCGAG 60.037 55.000 0.00 0.00 0.00 4.63
1337 1462 5.008911 CCATTCAAGTGAGTGATCACAACAA 59.991 40.000 27.02 14.61 42.68 2.83
1346 1473 7.502226 AGTGAGTGATCACAACAATTTTCCTTA 59.498 33.333 27.02 0.00 42.68 2.69
1348 1475 6.981722 AGTGATCACAACAATTTTCCTTACC 58.018 36.000 27.02 0.00 0.00 2.85
1449 1589 3.063180 CACTGGATTTGCTCTCGTTGATC 59.937 47.826 0.00 0.00 0.00 2.92
1466 1606 5.451937 CGTTGATCTTCCTATAGAACAGGCA 60.452 44.000 0.00 0.00 30.08 4.75
1658 1798 1.577328 CTGGCTTTGTGGCGATCGTT 61.577 55.000 17.81 0.00 45.14 3.85
1747 1890 6.017605 GTGTTAGTATCTGCTTTATGCTGCAT 60.018 38.462 20.18 20.18 43.37 3.96
1847 1990 1.110442 TGGGCATTATTCCTTTGGCG 58.890 50.000 0.00 0.00 36.84 5.69
1904 2047 3.925913 CAGTTTTCACACTTGTTTGGTGG 59.074 43.478 0.00 0.00 38.83 4.61
1910 2053 3.054287 TCACACTTGTTTGGTGGTCCTTA 60.054 43.478 0.00 0.00 38.83 2.69
1926 2069 6.255887 GTGGTCCTTATTGATCTTACTGAACG 59.744 42.308 0.00 0.00 0.00 3.95
2034 2179 4.820716 GCATTCTGATCCAAGTAGCATTCT 59.179 41.667 0.00 0.00 0.00 2.40
2259 2404 2.098614 TGTGGCAAAACTGAGCAGAAA 58.901 42.857 4.21 0.00 0.00 2.52
2547 2699 1.687628 CCGTCGCGAGGAATCTAATC 58.312 55.000 28.85 3.08 0.00 1.75
2587 2739 7.014988 TGCCCATACTGATATGCATAGTTTA 57.985 36.000 12.79 1.59 37.46 2.01
2606 2758 4.433186 TTACGAATGATGTTTTGCTGGG 57.567 40.909 0.00 0.00 0.00 4.45
2610 2762 2.754946 ATGATGTTTTGCTGGGCTTG 57.245 45.000 0.00 0.00 0.00 4.01
2667 2819 8.054152 TGAGTTACATATGTGCATTTGATTGT 57.946 30.769 18.81 0.00 0.00 2.71
2699 2851 1.771255 GGTGAGAATGTAGGGGATGCT 59.229 52.381 0.00 0.00 0.00 3.79
2819 2971 1.849219 GCAATCGACGTAAGCTCTCTG 59.151 52.381 0.00 0.00 45.62 3.35
2837 2989 5.375773 TCTCTGACTGATCCACTAGATGAG 58.624 45.833 0.00 0.00 41.60 2.90
2846 3008 7.043961 TGATCCACTAGATGAGTATGTTCAC 57.956 40.000 0.00 0.00 35.64 3.18
2921 3083 8.862325 TGGAAACAGATTATGTGATTTGTACT 57.138 30.769 0.00 0.00 43.00 2.73
2922 3084 8.729756 TGGAAACAGATTATGTGATTTGTACTG 58.270 33.333 0.00 0.00 43.00 2.74
2983 3148 2.765699 GCAAATTTATCAGGGGGCTTCA 59.234 45.455 0.00 0.00 0.00 3.02
3025 3190 6.375377 GGTTGCGTTCATCAGTGTTATTTTA 58.625 36.000 0.00 0.00 0.00 1.52
3073 3238 1.328680 CATGCTAGTGCGGTCATGTTC 59.671 52.381 0.00 0.00 43.34 3.18
3085 3250 3.181507 CGGTCATGTTCGCAATGAAAGAT 60.182 43.478 0.00 0.00 38.60 2.40
3126 3291 9.131791 AGTTTAAAATTCTTAGCAGTCTTTCCA 57.868 29.630 0.00 0.00 0.00 3.53
3131 3296 3.861840 TCTTAGCAGTCTTTCCATTCCG 58.138 45.455 0.00 0.00 0.00 4.30
3152 3317 5.655090 TCCGACAGATCACATAAGGTTCTTA 59.345 40.000 0.00 0.00 0.00 2.10
3419 3584 1.007038 GACGGTACTGGTTGTCGCA 60.007 57.895 6.65 0.00 0.00 5.10
3510 3675 8.599774 CGAGAATTCACTCTTCTATTTTTCTCC 58.400 37.037 8.44 0.00 35.37 3.71
3673 3838 9.837525 CCTGTTCTTTTATCTTTCAGATCAAAG 57.162 33.333 11.71 11.71 42.77 2.77
3684 3849 6.379133 TCTTTCAGATCAAAGGCTTTATGCAT 59.621 34.615 12.95 3.79 45.15 3.96
3685 3850 5.509716 TCAGATCAAAGGCTTTATGCATG 57.490 39.130 12.95 8.34 45.15 4.06
3822 3989 6.718912 TCATGAATCTCAAAATACACACCCAA 59.281 34.615 0.00 0.00 0.00 4.12
3830 3997 9.137459 TCTCAAAATACACACCCAATAAGAAAA 57.863 29.630 0.00 0.00 0.00 2.29
3832 3999 8.696374 TCAAAATACACACCCAATAAGAAAACA 58.304 29.630 0.00 0.00 0.00 2.83
3954 4123 5.557576 TCCCATGGATTCTACAGAAGATG 57.442 43.478 15.22 1.01 37.48 2.90
3960 4129 6.378710 TGGATTCTACAGAAGATGTCTACG 57.621 41.667 0.00 0.00 42.70 3.51
4050 4226 5.123027 CCTCACATTTAGAGGTCTTTCAAGC 59.877 44.000 0.00 0.00 46.07 4.01
4067 4243 3.119743 TCAAGCGCATCCATTCTTGAAAG 60.120 43.478 11.47 0.00 41.08 2.62
4092 4268 0.035152 TCAGAAAGCCGCACATCCAT 60.035 50.000 0.00 0.00 0.00 3.41
4273 4463 6.435430 TGTAAGATCAATCAAAACATCGGG 57.565 37.500 0.00 0.00 0.00 5.14
4318 4510 2.627863 TCAAACCCATCGAAATTGCG 57.372 45.000 0.00 0.00 0.00 4.85
4352 4546 9.084533 CTTAGAGGCTTAGATGGTATACTTCTT 57.915 37.037 12.17 0.00 35.44 2.52
4374 4568 4.293662 AGAGACCACCTGATTCCTTTTC 57.706 45.455 0.00 0.00 0.00 2.29
4392 4586 0.417841 TCTCCCTCCTGGCTACCTTT 59.582 55.000 0.00 0.00 0.00 3.11
4425 4619 1.425428 CAATCCAAGCGACGAAGGC 59.575 57.895 0.00 0.00 0.00 4.35
4447 4641 0.251653 TTAGGGTGCTCAGGACGTCT 60.252 55.000 16.46 0.00 0.00 4.18
4481 4675 2.417516 CCGCCAGGATGTCCGTAG 59.582 66.667 0.00 0.00 42.08 3.51
4482 4676 2.423898 CCGCCAGGATGTCCGTAGT 61.424 63.158 0.00 0.00 42.08 2.73
4508 4702 2.583319 CCACGCGCATCATCTCGT 60.583 61.111 5.73 0.00 35.35 4.18
4587 4781 9.638176 ATTCAGTTTATCTTGGATGCTTAAGAT 57.362 29.630 6.67 5.36 43.80 2.40
4621 4815 0.322816 ACAGGGAGCAATGCGACATT 60.323 50.000 0.00 0.00 0.00 2.71
4838 5032 2.497273 GAGGGTTAAAGCATGCACCATT 59.503 45.455 21.98 10.31 0.00 3.16
4917 5111 4.033358 CCATCTGCGAGTTGTGTTCTATTC 59.967 45.833 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.356639 TTCTACTCGCCGGCTGCAG 62.357 63.158 26.68 19.23 41.33 4.41
13 14 3.356639 CTTCTACTCGCCGGCTGCA 62.357 63.158 26.68 7.19 41.33 4.41
14 15 2.583593 CTTCTACTCGCCGGCTGC 60.584 66.667 26.68 0.00 0.00 5.25
15 16 2.105128 CCTTCTACTCGCCGGCTG 59.895 66.667 26.68 19.36 0.00 4.85
16 17 3.148279 CCCTTCTACTCGCCGGCT 61.148 66.667 26.68 8.66 0.00 5.52
17 18 4.893601 GCCCTTCTACTCGCCGGC 62.894 72.222 19.07 19.07 0.00 6.13
18 19 3.432051 CTGCCCTTCTACTCGCCGG 62.432 68.421 0.00 0.00 0.00 6.13
19 20 2.105128 CTGCCCTTCTACTCGCCG 59.895 66.667 0.00 0.00 0.00 6.46
20 21 2.202946 GCTGCCCTTCTACTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
21 22 2.583593 CGCTGCCCTTCTACTCGC 60.584 66.667 0.00 0.00 0.00 5.03
22 23 1.226717 GACGCTGCCCTTCTACTCG 60.227 63.158 0.00 0.00 0.00 4.18
23 24 1.226717 CGACGCTGCCCTTCTACTC 60.227 63.158 0.00 0.00 0.00 2.59
24 25 2.711922 CCGACGCTGCCCTTCTACT 61.712 63.158 0.00 0.00 0.00 2.57
25 26 2.202756 CCGACGCTGCCCTTCTAC 60.203 66.667 0.00 0.00 0.00 2.59
26 27 4.143333 GCCGACGCTGCCCTTCTA 62.143 66.667 0.00 0.00 0.00 2.10
47 48 2.799371 CTCGTCCTAGCACGGGAC 59.201 66.667 0.00 11.22 43.40 4.46
48 49 3.138798 GCTCGTCCTAGCACGGGA 61.139 66.667 11.10 0.00 43.40 5.14
54 55 1.090625 TCGTCTCTGCTCGTCCTAGC 61.091 60.000 0.00 0.00 43.08 3.42
55 56 0.934496 CTCGTCTCTGCTCGTCCTAG 59.066 60.000 0.00 0.00 0.00 3.02
56 57 0.535797 TCTCGTCTCTGCTCGTCCTA 59.464 55.000 0.00 0.00 0.00 2.94
57 58 0.321741 TTCTCGTCTCTGCTCGTCCT 60.322 55.000 0.00 0.00 0.00 3.85
58 59 0.179184 GTTCTCGTCTCTGCTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
59 60 0.519586 CGTTCTCGTCTCTGCTCGTC 60.520 60.000 0.00 0.00 0.00 4.20
60 61 1.498166 CGTTCTCGTCTCTGCTCGT 59.502 57.895 0.00 0.00 0.00 4.18
61 62 1.865622 GCGTTCTCGTCTCTGCTCG 60.866 63.158 0.00 0.00 39.49 5.03
62 63 0.179150 ATGCGTTCTCGTCTCTGCTC 60.179 55.000 0.00 0.00 39.49 4.26
63 64 1.064803 CTATGCGTTCTCGTCTCTGCT 59.935 52.381 0.00 0.00 39.49 4.24
64 65 1.471964 CTATGCGTTCTCGTCTCTGC 58.528 55.000 0.00 0.00 39.49 4.26
65 66 1.671328 TCCTATGCGTTCTCGTCTCTG 59.329 52.381 0.00 0.00 39.49 3.35
66 67 1.944024 CTCCTATGCGTTCTCGTCTCT 59.056 52.381 0.00 0.00 39.49 3.10
67 68 1.671845 ACTCCTATGCGTTCTCGTCTC 59.328 52.381 0.00 0.00 39.49 3.36
68 69 1.402259 CACTCCTATGCGTTCTCGTCT 59.598 52.381 0.00 0.00 39.49 4.18
69 70 1.534175 CCACTCCTATGCGTTCTCGTC 60.534 57.143 0.00 0.00 39.49 4.20
70 71 0.456221 CCACTCCTATGCGTTCTCGT 59.544 55.000 0.00 0.00 39.49 4.18
71 72 0.872021 GCCACTCCTATGCGTTCTCG 60.872 60.000 0.00 0.00 40.37 4.04
72 73 0.530870 GGCCACTCCTATGCGTTCTC 60.531 60.000 0.00 0.00 0.00 2.87
73 74 1.522569 GGCCACTCCTATGCGTTCT 59.477 57.895 0.00 0.00 0.00 3.01
74 75 1.883084 CGGCCACTCCTATGCGTTC 60.883 63.158 2.24 0.00 0.00 3.95
75 76 2.186903 CGGCCACTCCTATGCGTT 59.813 61.111 2.24 0.00 0.00 4.84
76 77 4.530857 GCGGCCACTCCTATGCGT 62.531 66.667 2.24 0.00 0.00 5.24
110 111 4.845580 CCGCTGTAGGGGCTGCAG 62.846 72.222 10.11 10.11 44.84 4.41
135 136 4.200283 CTCTGCTCGTCCCGCCTC 62.200 72.222 0.00 0.00 0.00 4.70
138 139 3.708220 CTTCCTCTGCTCGTCCCGC 62.708 68.421 0.00 0.00 0.00 6.13
139 140 2.492090 CTTCCTCTGCTCGTCCCG 59.508 66.667 0.00 0.00 0.00 5.14
140 141 2.185608 GCTTCCTCTGCTCGTCCC 59.814 66.667 0.00 0.00 0.00 4.46
141 142 2.202676 CGCTTCCTCTGCTCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
142 143 2.202676 CCGCTTCCTCTGCTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
143 144 2.676822 TCCGCTTCCTCTGCTCGT 60.677 61.111 0.00 0.00 0.00 4.18
144 145 2.103934 CTCCGCTTCCTCTGCTCG 59.896 66.667 0.00 0.00 0.00 5.03
145 146 2.202864 GCTCCGCTTCCTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
146 147 2.999648 TGCTCCGCTTCCTCTGCT 61.000 61.111 0.00 0.00 0.00 4.24
147 148 2.511145 CTGCTCCGCTTCCTCTGC 60.511 66.667 0.00 0.00 0.00 4.26
148 149 0.739112 GAACTGCTCCGCTTCCTCTG 60.739 60.000 0.00 0.00 0.00 3.35
149 150 1.594310 GAACTGCTCCGCTTCCTCT 59.406 57.895 0.00 0.00 0.00 3.69
150 151 1.807573 CGAACTGCTCCGCTTCCTC 60.808 63.158 0.00 0.00 0.00 3.71
151 152 2.262915 CGAACTGCTCCGCTTCCT 59.737 61.111 0.00 0.00 0.00 3.36
152 153 2.048127 ACGAACTGCTCCGCTTCC 60.048 61.111 0.00 0.00 0.00 3.46
153 154 0.667792 AAGACGAACTGCTCCGCTTC 60.668 55.000 0.00 0.00 0.00 3.86
154 155 0.667792 GAAGACGAACTGCTCCGCTT 60.668 55.000 0.00 0.00 0.00 4.68
155 156 1.080434 GAAGACGAACTGCTCCGCT 60.080 57.895 0.00 0.00 0.00 5.52
156 157 2.437343 CGAAGACGAACTGCTCCGC 61.437 63.158 0.00 0.00 42.66 5.54
157 158 2.437343 GCGAAGACGAACTGCTCCG 61.437 63.158 0.00 0.00 42.66 4.63
158 159 2.437343 CGCGAAGACGAACTGCTCC 61.437 63.158 0.00 0.00 42.66 4.70
159 160 3.060663 GCGCGAAGACGAACTGCTC 62.061 63.158 12.10 0.00 42.66 4.26
160 161 3.106407 GCGCGAAGACGAACTGCT 61.106 61.111 12.10 0.00 42.66 4.24
161 162 2.535688 GAAGCGCGAAGACGAACTGC 62.536 60.000 12.10 0.00 42.66 4.40
162 163 1.275471 TGAAGCGCGAAGACGAACTG 61.275 55.000 12.10 0.00 42.66 3.16
163 164 0.596600 TTGAAGCGCGAAGACGAACT 60.597 50.000 12.10 0.00 42.66 3.01
164 165 0.231279 TTTGAAGCGCGAAGACGAAC 59.769 50.000 12.10 0.00 42.66 3.95
165 166 1.144969 ATTTGAAGCGCGAAGACGAA 58.855 45.000 12.10 4.18 42.66 3.85
166 167 1.136363 CAATTTGAAGCGCGAAGACGA 60.136 47.619 12.10 0.00 42.66 4.20
167 168 1.241744 CAATTTGAAGCGCGAAGACG 58.758 50.000 12.10 0.00 42.93 4.18
168 169 2.234187 GACAATTTGAAGCGCGAAGAC 58.766 47.619 12.10 0.00 0.00 3.01
169 170 1.196808 GGACAATTTGAAGCGCGAAGA 59.803 47.619 12.10 0.00 0.00 2.87
170 171 1.069296 TGGACAATTTGAAGCGCGAAG 60.069 47.619 12.10 0.00 0.00 3.79
171 172 0.947960 TGGACAATTTGAAGCGCGAA 59.052 45.000 12.10 0.00 0.00 4.70
172 173 0.516877 CTGGACAATTTGAAGCGCGA 59.483 50.000 12.10 0.00 0.00 5.87
173 174 1.067199 GCTGGACAATTTGAAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
174 175 2.729378 GCTGGACAATTTGAAGCGC 58.271 52.632 0.00 0.00 0.00 5.92
176 177 1.067199 CGCGCTGGACAATTTGAAGC 61.067 55.000 5.56 8.13 0.00 3.86
177 178 1.067199 GCGCGCTGGACAATTTGAAG 61.067 55.000 26.67 0.00 0.00 3.02
178 179 1.081509 GCGCGCTGGACAATTTGAA 60.082 52.632 26.67 0.00 0.00 2.69
179 180 1.965930 AGCGCGCTGGACAATTTGA 60.966 52.632 36.13 0.00 0.00 2.69
180 181 1.798725 CAGCGCGCTGGACAATTTG 60.799 57.895 45.16 23.35 40.17 2.32
181 182 2.562912 CAGCGCGCTGGACAATTT 59.437 55.556 45.16 15.81 40.17 1.82
198 199 1.768112 ATATTTGGTGCGCGGCGTAC 61.768 55.000 30.92 30.92 41.39 3.67
199 200 1.492319 GATATTTGGTGCGCGGCGTA 61.492 55.000 24.46 17.70 0.00 4.42
200 201 2.819552 GATATTTGGTGCGCGGCGT 61.820 57.895 24.46 4.34 0.00 5.68
201 202 2.052237 GATATTTGGTGCGCGGCG 60.052 61.111 19.62 19.62 0.00 6.46
202 203 2.331451 GGATATTTGGTGCGCGGC 59.669 61.111 8.83 0.00 0.00 6.53
203 204 2.892334 CGGGATATTTGGTGCGCGG 61.892 63.158 8.83 0.00 33.79 6.46
204 205 2.631428 CGGGATATTTGGTGCGCG 59.369 61.111 0.00 0.00 0.00 6.86
205 206 2.331451 GCGGGATATTTGGTGCGC 59.669 61.111 0.00 0.00 0.00 6.09
206 207 2.631428 CGCGGGATATTTGGTGCG 59.369 61.111 0.00 0.00 39.57 5.34
207 208 1.355210 CACGCGGGATATTTGGTGC 59.645 57.895 12.47 0.00 0.00 5.01
208 209 1.355210 GCACGCGGGATATTTGGTG 59.645 57.895 15.48 0.00 0.00 4.17
209 210 2.177580 CGCACGCGGGATATTTGGT 61.178 57.895 15.48 0.00 35.56 3.67
210 211 1.227999 ATCGCACGCGGGATATTTGG 61.228 55.000 15.48 0.00 42.60 3.28
211 212 0.110688 CATCGCACGCGGGATATTTG 60.111 55.000 15.48 0.00 42.54 2.32
212 213 1.841663 GCATCGCACGCGGGATATTT 61.842 55.000 15.48 0.00 42.54 1.40
213 214 2.317609 GCATCGCACGCGGGATATT 61.318 57.895 15.48 0.00 42.54 1.28
214 215 2.738521 GCATCGCACGCGGGATAT 60.739 61.111 15.48 0.00 42.54 1.63
215 216 4.214327 TGCATCGCACGCGGGATA 62.214 61.111 15.48 0.00 42.54 2.59
219 220 2.582202 AATTTCTGCATCGCACGCGG 62.582 55.000 12.47 0.00 40.25 6.46
220 221 1.189989 GAATTTCTGCATCGCACGCG 61.190 55.000 3.53 3.53 41.35 6.01
221 222 0.863119 GGAATTTCTGCATCGCACGC 60.863 55.000 0.00 0.00 33.79 5.34
222 223 0.248215 GGGAATTTCTGCATCGCACG 60.248 55.000 0.00 0.00 33.79 5.34
223 224 0.810648 TGGGAATTTCTGCATCGCAC 59.189 50.000 0.30 0.00 33.79 5.34
224 225 1.097232 CTGGGAATTTCTGCATCGCA 58.903 50.000 4.24 4.24 36.92 5.10
225 226 0.248784 GCTGGGAATTTCTGCATCGC 60.249 55.000 0.00 0.00 0.00 4.58
226 227 0.028505 CGCTGGGAATTTCTGCATCG 59.971 55.000 0.00 0.00 0.00 3.84
227 228 0.248784 GCGCTGGGAATTTCTGCATC 60.249 55.000 0.00 0.00 0.00 3.91
228 229 1.669999 GGCGCTGGGAATTTCTGCAT 61.670 55.000 7.64 0.00 0.00 3.96
229 230 2.342650 GGCGCTGGGAATTTCTGCA 61.343 57.895 7.64 0.00 0.00 4.41
230 231 2.491621 GGCGCTGGGAATTTCTGC 59.508 61.111 7.64 0.00 0.00 4.26
231 232 1.379044 AGGGCGCTGGGAATTTCTG 60.379 57.895 7.64 0.00 0.00 3.02
232 233 1.379044 CAGGGCGCTGGGAATTTCT 60.379 57.895 22.42 0.00 0.00 2.52
233 234 2.418083 CCAGGGCGCTGGGAATTTC 61.418 63.158 35.95 0.00 40.68 2.17
234 235 2.228841 ATCCAGGGCGCTGGGAATTT 62.229 55.000 40.07 21.85 44.34 1.82
235 236 2.693871 ATCCAGGGCGCTGGGAATT 61.694 57.895 40.07 23.96 44.34 2.17
236 237 3.099170 ATCCAGGGCGCTGGGAAT 61.099 61.111 40.07 28.14 44.34 3.01
237 238 4.113815 CATCCAGGGCGCTGGGAA 62.114 66.667 40.07 27.30 44.34 3.97
240 241 2.916527 AAATCCATCCAGGGCGCTGG 62.917 60.000 37.31 37.31 45.53 4.85
241 242 1.039233 AAAATCCATCCAGGGCGCTG 61.039 55.000 23.12 23.12 38.24 5.18
242 243 0.550914 TAAAATCCATCCAGGGCGCT 59.449 50.000 7.64 0.00 38.24 5.92
243 244 0.668535 GTAAAATCCATCCAGGGCGC 59.331 55.000 0.00 0.00 38.24 6.53
244 245 1.949525 CTGTAAAATCCATCCAGGGCG 59.050 52.381 0.00 0.00 38.24 6.13
245 246 1.683385 GCTGTAAAATCCATCCAGGGC 59.317 52.381 0.00 0.00 38.24 5.19
246 247 1.949525 CGCTGTAAAATCCATCCAGGG 59.050 52.381 0.00 0.00 38.24 4.45
247 248 2.355756 CACGCTGTAAAATCCATCCAGG 59.644 50.000 0.00 0.00 39.47 4.45
248 249 2.223340 GCACGCTGTAAAATCCATCCAG 60.223 50.000 0.00 0.00 0.00 3.86
249 250 1.742831 GCACGCTGTAAAATCCATCCA 59.257 47.619 0.00 0.00 0.00 3.41
250 251 2.017049 AGCACGCTGTAAAATCCATCC 58.983 47.619 0.00 0.00 0.00 3.51
251 252 2.223340 CCAGCACGCTGTAAAATCCATC 60.223 50.000 17.31 0.00 42.15 3.51
252 253 1.745087 CCAGCACGCTGTAAAATCCAT 59.255 47.619 17.31 0.00 42.15 3.41
253 254 1.164411 CCAGCACGCTGTAAAATCCA 58.836 50.000 17.31 0.00 42.15 3.41
254 255 0.179163 GCCAGCACGCTGTAAAATCC 60.179 55.000 17.31 0.00 42.15 3.01
255 256 0.804989 AGCCAGCACGCTGTAAAATC 59.195 50.000 17.31 0.62 42.15 2.17
256 257 1.247567 AAGCCAGCACGCTGTAAAAT 58.752 45.000 17.31 0.00 42.15 1.82
257 258 1.028905 AAAGCCAGCACGCTGTAAAA 58.971 45.000 17.31 0.00 42.15 1.52
258 259 1.028905 AAAAGCCAGCACGCTGTAAA 58.971 45.000 17.31 0.00 42.15 2.01
259 260 0.310543 CAAAAGCCAGCACGCTGTAA 59.689 50.000 17.31 0.00 42.15 2.41
260 261 1.948508 CAAAAGCCAGCACGCTGTA 59.051 52.632 17.31 0.00 42.15 2.74
261 262 2.723746 CAAAAGCCAGCACGCTGT 59.276 55.556 17.31 0.00 42.15 4.40
262 263 2.732094 GCAAAAGCCAGCACGCTG 60.732 61.111 12.17 12.17 39.64 5.18
263 264 3.203546 CTGCAAAAGCCAGCACGCT 62.204 57.895 0.00 0.00 42.22 5.07
264 265 2.732094 CTGCAAAAGCCAGCACGC 60.732 61.111 0.00 0.00 36.62 5.34
273 274 0.581529 TTCGACAGACGCTGCAAAAG 59.418 50.000 0.00 0.00 42.26 2.27
274 275 0.581529 CTTCGACAGACGCTGCAAAA 59.418 50.000 0.00 0.00 42.26 2.44
275 276 0.249280 TCTTCGACAGACGCTGCAAA 60.249 50.000 0.00 0.00 42.26 3.68
276 277 0.038251 ATCTTCGACAGACGCTGCAA 60.038 50.000 0.00 0.00 42.26 4.08
277 278 0.733909 CATCTTCGACAGACGCTGCA 60.734 55.000 0.00 0.00 42.26 4.41
278 279 1.994467 CATCTTCGACAGACGCTGC 59.006 57.895 6.74 0.00 42.26 5.25
279 280 1.994467 GCATCTTCGACAGACGCTG 59.006 57.895 7.94 5.47 37.75 5.18
280 281 1.886585 AGCATCTTCGACAGACGCT 59.113 52.632 10.85 10.85 46.48 5.07
281 282 1.142778 GGAGCATCTTCGACAGACGC 61.143 60.000 7.33 7.33 41.33 5.19
282 283 0.863538 CGGAGCATCTTCGACAGACG 60.864 60.000 0.00 0.00 33.77 4.18
283 284 2.950877 CGGAGCATCTTCGACAGAC 58.049 57.895 0.00 0.00 33.77 3.51
297 298 0.381428 CGTTAATTTAGCGCGCGGAG 60.381 55.000 33.06 3.70 0.00 4.63
298 299 1.077645 ACGTTAATTTAGCGCGCGGA 61.078 50.000 33.06 15.73 35.74 5.54
299 300 0.247379 AACGTTAATTTAGCGCGCGG 60.247 50.000 33.06 13.66 35.74 6.46
300 301 1.516208 AAACGTTAATTTAGCGCGCG 58.484 45.000 28.44 28.44 35.74 6.86
301 302 3.939248 AAAAACGTTAATTTAGCGCGC 57.061 38.095 26.66 26.66 35.74 6.86
325 326 1.814169 GCTAAAAGTAGCCCGCGCT 60.814 57.895 5.56 0.00 46.10 5.92
326 327 2.707646 GCTAAAAGTAGCCCGCGC 59.292 61.111 0.00 0.00 46.10 6.86
332 333 7.370186 CTCCAAAAGAGGCGCTAAAAGTAGC 62.370 48.000 7.64 0.00 42.89 3.58
333 334 4.000988 TCCAAAAGAGGCGCTAAAAGTAG 58.999 43.478 7.64 0.00 0.00 2.57
334 335 4.000988 CTCCAAAAGAGGCGCTAAAAGTA 58.999 43.478 7.64 0.00 39.13 2.24
335 336 2.814336 CTCCAAAAGAGGCGCTAAAAGT 59.186 45.455 7.64 0.00 39.13 2.66
336 337 3.074412 TCTCCAAAAGAGGCGCTAAAAG 58.926 45.455 7.64 0.00 43.44 2.27
337 338 3.134574 TCTCCAAAAGAGGCGCTAAAA 57.865 42.857 7.64 0.00 43.44 1.52
338 339 2.851263 TCTCCAAAAGAGGCGCTAAA 57.149 45.000 7.64 0.00 43.44 1.85
339 340 2.632377 CATCTCCAAAAGAGGCGCTAA 58.368 47.619 7.64 0.00 43.44 3.09
340 341 2.315925 CATCTCCAAAAGAGGCGCTA 57.684 50.000 7.64 0.00 43.44 4.26
341 342 3.165606 CATCTCCAAAAGAGGCGCT 57.834 52.632 7.64 0.00 43.44 5.92
361 362 3.131933 GGCTGAGCTCTTCACATCTAAGA 59.868 47.826 16.19 0.00 0.00 2.10
362 363 3.118847 TGGCTGAGCTCTTCACATCTAAG 60.119 47.826 16.19 0.44 0.00 2.18
363 364 2.833943 TGGCTGAGCTCTTCACATCTAA 59.166 45.455 16.19 0.00 0.00 2.10
364 365 2.460669 TGGCTGAGCTCTTCACATCTA 58.539 47.619 16.19 0.00 0.00 1.98
365 366 1.273759 TGGCTGAGCTCTTCACATCT 58.726 50.000 16.19 0.00 0.00 2.90
366 367 2.328819 ATGGCTGAGCTCTTCACATC 57.671 50.000 16.19 0.00 0.00 3.06
367 368 2.026542 TGAATGGCTGAGCTCTTCACAT 60.027 45.455 16.19 11.03 29.48 3.21
368 369 1.348696 TGAATGGCTGAGCTCTTCACA 59.651 47.619 16.19 9.16 29.48 3.58
369 370 1.736681 GTGAATGGCTGAGCTCTTCAC 59.263 52.381 25.06 25.06 39.98 3.18
370 371 1.339438 GGTGAATGGCTGAGCTCTTCA 60.339 52.381 16.19 12.86 30.97 3.02
371 372 1.377536 GGTGAATGGCTGAGCTCTTC 58.622 55.000 16.19 10.29 0.00 2.87
372 373 0.034670 GGGTGAATGGCTGAGCTCTT 60.035 55.000 16.19 0.00 0.00 2.85
373 374 1.606531 GGGTGAATGGCTGAGCTCT 59.393 57.895 16.19 0.00 0.00 4.09
374 375 1.817099 CGGGTGAATGGCTGAGCTC 60.817 63.158 6.82 6.82 0.00 4.09
375 376 2.270205 CGGGTGAATGGCTGAGCT 59.730 61.111 3.72 0.00 0.00 4.09
376 377 2.825836 CCGGGTGAATGGCTGAGC 60.826 66.667 0.00 0.00 0.00 4.26
377 378 2.124570 CCCGGGTGAATGGCTGAG 60.125 66.667 14.18 0.00 0.00 3.35
378 379 4.424711 GCCCGGGTGAATGGCTGA 62.425 66.667 24.63 0.00 42.01 4.26
389 390 4.183858 TTCTAATGGCGGCCCGGG 62.184 66.667 19.09 19.09 0.00 5.73
390 391 2.035237 TAGTTCTAATGGCGGCCCGG 62.035 60.000 17.97 0.00 0.00 5.73
391 392 0.034896 ATAGTTCTAATGGCGGCCCG 59.965 55.000 17.97 0.00 0.00 6.13
392 393 1.523758 CATAGTTCTAATGGCGGCCC 58.476 55.000 17.97 0.00 0.00 5.80
393 394 0.875059 GCATAGTTCTAATGGCGGCC 59.125 55.000 13.32 13.32 0.00 6.13
394 395 1.593196 TGCATAGTTCTAATGGCGGC 58.407 50.000 0.00 0.00 0.00 6.53
395 396 4.539870 CAAATGCATAGTTCTAATGGCGG 58.460 43.478 0.00 0.00 0.00 6.13
396 397 3.976942 GCAAATGCATAGTTCTAATGGCG 59.023 43.478 0.00 0.00 41.59 5.69
397 398 5.192327 AGCAAATGCATAGTTCTAATGGC 57.808 39.130 8.28 0.00 45.16 4.40
398 399 9.754382 AATTTAGCAAATGCATAGTTCTAATGG 57.246 29.630 8.28 0.00 45.16 3.16
403 404 8.526147 ACTGAAATTTAGCAAATGCATAGTTCT 58.474 29.630 8.28 0.00 45.16 3.01
404 405 8.589629 CACTGAAATTTAGCAAATGCATAGTTC 58.410 33.333 8.28 7.66 45.16 3.01
405 406 7.546667 CCACTGAAATTTAGCAAATGCATAGTT 59.453 33.333 8.28 0.00 45.16 2.24
406 407 7.037438 CCACTGAAATTTAGCAAATGCATAGT 58.963 34.615 8.28 0.00 45.16 2.12
407 408 6.019318 GCCACTGAAATTTAGCAAATGCATAG 60.019 38.462 8.28 0.00 45.16 2.23
408 409 5.811613 GCCACTGAAATTTAGCAAATGCATA 59.188 36.000 8.28 0.00 45.16 3.14
409 410 4.632688 GCCACTGAAATTTAGCAAATGCAT 59.367 37.500 8.28 0.00 45.16 3.96
410 411 3.995705 GCCACTGAAATTTAGCAAATGCA 59.004 39.130 8.28 0.00 45.16 3.96
411 412 3.371898 GGCCACTGAAATTTAGCAAATGC 59.628 43.478 0.00 0.00 42.49 3.56
412 413 4.824289 AGGCCACTGAAATTTAGCAAATG 58.176 39.130 5.01 0.00 0.00 2.32
426 427 1.392589 AGTGTGTTTTCAGGCCACTG 58.607 50.000 5.01 0.00 46.30 3.66
427 428 2.024414 GAAGTGTGTTTTCAGGCCACT 58.976 47.619 5.01 0.00 36.61 4.00
428 429 1.268539 CGAAGTGTGTTTTCAGGCCAC 60.269 52.381 5.01 0.00 0.00 5.01
429 430 1.021202 CGAAGTGTGTTTTCAGGCCA 58.979 50.000 5.01 0.00 0.00 5.36
430 431 1.021968 ACGAAGTGTGTTTTCAGGCC 58.978 50.000 0.00 0.00 42.51 5.19
444 445 5.568482 TCATCAAAAACAACTGACACGAAG 58.432 37.500 0.00 0.00 0.00 3.79
445 446 5.553290 TCATCAAAAACAACTGACACGAA 57.447 34.783 0.00 0.00 0.00 3.85
446 447 5.553290 TTCATCAAAAACAACTGACACGA 57.447 34.783 0.00 0.00 0.00 4.35
447 448 6.624710 TTTTCATCAAAAACAACTGACACG 57.375 33.333 0.00 0.00 31.88 4.49
448 449 9.476761 GAATTTTTCATCAAAAACAACTGACAC 57.523 29.630 0.00 0.00 42.87 3.67
449 450 9.434420 AGAATTTTTCATCAAAAACAACTGACA 57.566 25.926 0.00 0.00 42.87 3.58
450 451 9.693157 CAGAATTTTTCATCAAAAACAACTGAC 57.307 29.630 9.88 0.00 42.87 3.51
451 452 9.650539 TCAGAATTTTTCATCAAAAACAACTGA 57.349 25.926 12.40 12.40 42.87 3.41
454 455 9.706846 CCTTCAGAATTTTTCATCAAAAACAAC 57.293 29.630 0.00 0.00 42.87 3.32
455 456 8.397148 GCCTTCAGAATTTTTCATCAAAAACAA 58.603 29.630 0.00 0.00 42.87 2.83
456 457 7.551974 TGCCTTCAGAATTTTTCATCAAAAACA 59.448 29.630 0.00 0.00 42.87 2.83
457 458 7.918643 TGCCTTCAGAATTTTTCATCAAAAAC 58.081 30.769 0.00 0.00 42.87 2.43
458 459 7.227116 CCTGCCTTCAGAATTTTTCATCAAAAA 59.773 33.333 0.00 0.00 42.34 1.94
459 460 6.707161 CCTGCCTTCAGAATTTTTCATCAAAA 59.293 34.615 0.00 0.00 42.95 2.44
460 461 6.225318 CCTGCCTTCAGAATTTTTCATCAAA 58.775 36.000 0.00 0.00 42.95 2.69
461 462 5.786311 CCTGCCTTCAGAATTTTTCATCAA 58.214 37.500 0.00 0.00 42.95 2.57
462 463 4.322198 GCCTGCCTTCAGAATTTTTCATCA 60.322 41.667 0.00 0.00 42.95 3.07
463 464 4.179298 GCCTGCCTTCAGAATTTTTCATC 58.821 43.478 0.00 0.00 42.95 2.92
464 465 3.055602 GGCCTGCCTTCAGAATTTTTCAT 60.056 43.478 0.00 0.00 42.95 2.57
465 466 2.299867 GGCCTGCCTTCAGAATTTTTCA 59.700 45.455 0.00 0.00 42.95 2.69
466 467 2.354103 GGGCCTGCCTTCAGAATTTTTC 60.354 50.000 8.29 0.00 42.95 2.29
467 468 1.625315 GGGCCTGCCTTCAGAATTTTT 59.375 47.619 8.29 0.00 42.95 1.94
468 469 1.269958 GGGCCTGCCTTCAGAATTTT 58.730 50.000 8.29 0.00 42.95 1.82
469 470 0.967380 CGGGCCTGCCTTCAGAATTT 60.967 55.000 8.29 0.00 42.95 1.82
470 471 1.379044 CGGGCCTGCCTTCAGAATT 60.379 57.895 8.29 0.00 42.95 2.17
471 472 2.273449 CGGGCCTGCCTTCAGAAT 59.727 61.111 8.29 0.00 42.95 2.40
472 473 4.033776 CCGGGCCTGCCTTCAGAA 62.034 66.667 5.85 0.00 42.95 3.02
487 488 3.522731 CTCCTCGTCTCAGCCCCG 61.523 72.222 0.00 0.00 0.00 5.73
488 489 3.151022 CCTCCTCGTCTCAGCCCC 61.151 72.222 0.00 0.00 0.00 5.80
489 490 3.151022 CCCTCCTCGTCTCAGCCC 61.151 72.222 0.00 0.00 0.00 5.19
490 491 2.043852 TCCCTCCTCGTCTCAGCC 60.044 66.667 0.00 0.00 0.00 4.85
491 492 2.124693 CCTCCCTCCTCGTCTCAGC 61.125 68.421 0.00 0.00 0.00 4.26
492 493 0.033991 TTCCTCCCTCCTCGTCTCAG 60.034 60.000 0.00 0.00 0.00 3.35
493 494 0.033991 CTTCCTCCCTCCTCGTCTCA 60.034 60.000 0.00 0.00 0.00 3.27
494 495 0.256464 TCTTCCTCCCTCCTCGTCTC 59.744 60.000 0.00 0.00 0.00 3.36
495 496 0.257616 CTCTTCCTCCCTCCTCGTCT 59.742 60.000 0.00 0.00 0.00 4.18
496 497 0.753848 CCTCTTCCTCCCTCCTCGTC 60.754 65.000 0.00 0.00 0.00 4.20
497 498 1.308326 CCTCTTCCTCCCTCCTCGT 59.692 63.158 0.00 0.00 0.00 4.18
498 499 1.456705 CCCTCTTCCTCCCTCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
499 500 0.043485 AACCCTCTTCCTCCCTCCTC 59.957 60.000 0.00 0.00 0.00 3.71
500 501 0.252927 CAACCCTCTTCCTCCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
501 502 0.252742 TCAACCCTCTTCCTCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
502 503 0.906066 GTCAACCCTCTTCCTCCCTC 59.094 60.000 0.00 0.00 0.00 4.30
503 504 0.905337 CGTCAACCCTCTTCCTCCCT 60.905 60.000 0.00 0.00 0.00 4.20
504 505 1.192803 ACGTCAACCCTCTTCCTCCC 61.193 60.000 0.00 0.00 0.00 4.30
505 506 0.246910 GACGTCAACCCTCTTCCTCC 59.753 60.000 11.55 0.00 0.00 4.30
506 507 1.067495 CAGACGTCAACCCTCTTCCTC 60.067 57.143 19.50 0.00 0.00 3.71
507 508 0.969894 CAGACGTCAACCCTCTTCCT 59.030 55.000 19.50 0.00 0.00 3.36
508 509 0.966920 TCAGACGTCAACCCTCTTCC 59.033 55.000 19.50 0.00 0.00 3.46
509 510 1.336980 GGTCAGACGTCAACCCTCTTC 60.337 57.143 22.88 3.80 0.00 2.87
510 511 0.680061 GGTCAGACGTCAACCCTCTT 59.320 55.000 22.88 0.00 0.00 2.85
511 512 0.469331 TGGTCAGACGTCAACCCTCT 60.469 55.000 27.53 1.91 31.78 3.69
512 513 0.319641 GTGGTCAGACGTCAACCCTC 60.320 60.000 27.53 19.71 31.78 4.30
513 514 1.746517 GTGGTCAGACGTCAACCCT 59.253 57.895 27.53 3.30 31.78 4.34
514 515 1.663702 CGTGGTCAGACGTCAACCC 60.664 63.158 27.53 19.34 34.56 4.11
515 516 1.663702 CCGTGGTCAGACGTCAACC 60.664 63.158 25.30 25.30 37.66 3.77
516 517 1.663702 CCCGTGGTCAGACGTCAAC 60.664 63.158 19.50 14.89 37.66 3.18
517 518 2.732016 CCCGTGGTCAGACGTCAA 59.268 61.111 19.50 1.95 37.66 3.18
518 519 3.986006 GCCCGTGGTCAGACGTCA 61.986 66.667 19.50 0.00 37.66 4.35
519 520 3.986006 TGCCCGTGGTCAGACGTC 61.986 66.667 7.70 7.70 37.66 4.34
520 521 4.295119 GTGCCCGTGGTCAGACGT 62.295 66.667 0.00 0.00 37.66 4.34
526 527 3.009192 TATCACCGTGCCCGTGGTC 62.009 63.158 0.00 0.00 35.96 4.02
527 528 2.998480 TATCACCGTGCCCGTGGT 60.998 61.111 0.00 0.00 39.66 4.16
528 529 2.510691 GTATCACCGTGCCCGTGG 60.511 66.667 0.00 0.00 0.00 4.94
529 530 2.883730 CGTATCACCGTGCCCGTG 60.884 66.667 0.00 0.00 0.00 4.94
530 531 4.137872 CCGTATCACCGTGCCCGT 62.138 66.667 0.00 0.00 0.00 5.28
531 532 3.768185 CTCCGTATCACCGTGCCCG 62.768 68.421 0.00 0.00 0.00 6.13
532 533 2.106332 CTCCGTATCACCGTGCCC 59.894 66.667 0.00 0.00 0.00 5.36
533 534 2.106332 CCTCCGTATCACCGTGCC 59.894 66.667 0.00 0.00 0.00 5.01
534 535 2.106332 CCCTCCGTATCACCGTGC 59.894 66.667 0.00 0.00 0.00 5.34
535 536 1.436336 GACCCTCCGTATCACCGTG 59.564 63.158 0.00 0.00 0.00 4.94
536 537 2.117156 CGACCCTCCGTATCACCGT 61.117 63.158 0.00 0.00 0.00 4.83
537 538 1.783031 CTCGACCCTCCGTATCACCG 61.783 65.000 0.00 0.00 0.00 4.94
538 539 0.465097 TCTCGACCCTCCGTATCACC 60.465 60.000 0.00 0.00 0.00 4.02
539 540 0.945813 CTCTCGACCCTCCGTATCAC 59.054 60.000 0.00 0.00 0.00 3.06
555 556 1.045911 GGTCGGCATCTTCCTCCTCT 61.046 60.000 0.00 0.00 0.00 3.69
596 597 6.980397 GCCTGAATATTTTTCAATCGGTTGAT 59.020 34.615 12.77 0.00 43.49 2.57
769 795 1.812571 GTGCATGGTCAGGTTAGGTTG 59.187 52.381 0.00 0.00 0.00 3.77
840 866 1.333177 CTGATCCTAGTTAGGGCGCT 58.667 55.000 7.64 8.86 43.79 5.92
921 957 4.577875 GCAAGAATAGGAGGGAGATGATG 58.422 47.826 0.00 0.00 0.00 3.07
934 970 6.875726 TCCTCATGGATAAATCGCAAGAATAG 59.124 38.462 0.00 0.00 44.30 1.73
936 972 5.624159 TCCTCATGGATAAATCGCAAGAAT 58.376 37.500 0.00 0.00 44.30 2.40
1056 1101 4.461198 AGAACGAAACCTGATGGAAGTTT 58.539 39.130 0.00 0.00 36.46 2.66
1061 1106 1.278127 GGGAGAACGAAACCTGATGGA 59.722 52.381 0.00 0.00 37.04 3.41
1080 1125 0.905357 ACAGGAAAGGAGACGGATGG 59.095 55.000 0.00 0.00 0.00 3.51
1112 1158 5.811613 CAGAATGCAGAACAGGAAAAACAAA 59.188 36.000 0.00 0.00 0.00 2.83
1114 1160 4.402155 ACAGAATGCAGAACAGGAAAAACA 59.598 37.500 0.00 0.00 42.53 2.83
1115 1161 4.936891 ACAGAATGCAGAACAGGAAAAAC 58.063 39.130 0.00 0.00 42.53 2.43
1116 1162 5.827797 ACTACAGAATGCAGAACAGGAAAAA 59.172 36.000 0.00 0.00 42.53 1.94
1117 1163 5.376625 ACTACAGAATGCAGAACAGGAAAA 58.623 37.500 0.00 0.00 42.53 2.29
1118 1164 4.973168 ACTACAGAATGCAGAACAGGAAA 58.027 39.130 0.00 0.00 42.53 3.13
1119 1165 4.623932 ACTACAGAATGCAGAACAGGAA 57.376 40.909 0.00 0.00 42.53 3.36
1120 1166 5.738619 TTACTACAGAATGCAGAACAGGA 57.261 39.130 0.00 0.00 42.53 3.86
1121 1167 6.992063 AATTACTACAGAATGCAGAACAGG 57.008 37.500 0.00 0.00 42.53 4.00
1122 1168 8.709386 AGTAATTACTACAGAATGCAGAACAG 57.291 34.615 16.60 0.00 42.53 3.16
1123 1169 9.151471 GAAGTAATTACTACAGAATGCAGAACA 57.849 33.333 18.31 0.00 35.59 3.18
1124 1170 8.604890 GGAAGTAATTACTACAGAATGCAGAAC 58.395 37.037 18.31 0.00 35.59 3.01
1125 1171 7.491372 CGGAAGTAATTACTACAGAATGCAGAA 59.509 37.037 18.31 0.00 35.59 3.02
1126 1172 6.978659 CGGAAGTAATTACTACAGAATGCAGA 59.021 38.462 18.31 0.00 35.59 4.26
1127 1173 6.201044 CCGGAAGTAATTACTACAGAATGCAG 59.799 42.308 18.31 4.46 35.59 4.41
1128 1174 6.046593 CCGGAAGTAATTACTACAGAATGCA 58.953 40.000 18.31 0.00 35.59 3.96
1129 1175 6.047231 ACCGGAAGTAATTACTACAGAATGC 58.953 40.000 18.31 6.39 35.59 3.56
1130 1176 6.417044 CGACCGGAAGTAATTACTACAGAATG 59.583 42.308 18.31 6.68 37.65 2.67
1131 1177 6.319658 TCGACCGGAAGTAATTACTACAGAAT 59.680 38.462 18.31 1.71 34.99 2.40
1132 1178 5.647658 TCGACCGGAAGTAATTACTACAGAA 59.352 40.000 18.31 0.00 34.99 3.02
1133 1179 5.065218 GTCGACCGGAAGTAATTACTACAGA 59.935 44.000 18.31 8.61 34.99 3.41
1134 1180 5.269313 GTCGACCGGAAGTAATTACTACAG 58.731 45.833 18.31 11.68 34.99 2.74
1135 1181 4.096382 GGTCGACCGGAAGTAATTACTACA 59.904 45.833 20.85 0.00 34.99 2.74
1136 1182 4.498177 GGGTCGACCGGAAGTAATTACTAC 60.498 50.000 27.68 13.07 34.10 2.73
1137 1183 3.632145 GGGTCGACCGGAAGTAATTACTA 59.368 47.826 27.68 0.00 34.10 1.82
1138 1184 2.428530 GGGTCGACCGGAAGTAATTACT 59.571 50.000 27.68 12.50 35.82 2.24
1139 1185 2.166254 TGGGTCGACCGGAAGTAATTAC 59.834 50.000 27.68 7.57 44.64 1.89
1148 1194 0.320946 GTTGATTTGGGTCGACCGGA 60.321 55.000 27.68 15.97 44.64 5.14
1266 1391 4.520179 TCCTGTCCATCTGTGAATCAATG 58.480 43.478 0.00 0.00 0.00 2.82
1337 1462 4.546829 TGCACTAGACGGTAAGGAAAAT 57.453 40.909 0.00 0.00 0.00 1.82
1346 1473 3.827008 ATGATGAATGCACTAGACGGT 57.173 42.857 0.00 0.00 0.00 4.83
1348 1475 6.128715 GGAATGTATGATGAATGCACTAGACG 60.129 42.308 0.00 0.00 33.32 4.18
1393 1533 5.912955 GGAGACACGAAAACCAAAAACATAG 59.087 40.000 0.00 0.00 0.00 2.23
1397 1537 4.099380 TGGAGACACGAAAACCAAAAAC 57.901 40.909 0.00 0.00 33.40 2.43
1449 1589 4.101585 TGTGGATGCCTGTTCTATAGGAAG 59.898 45.833 0.00 0.00 37.52 3.46
1639 1779 1.577328 AACGATCGCCACAAAGCCAG 61.577 55.000 16.60 0.00 0.00 4.85
1794 1937 0.468029 AACACCCAGCCCTTCAACAG 60.468 55.000 0.00 0.00 0.00 3.16
1904 2047 7.544566 TGTTCGTTCAGTAAGATCAATAAGGAC 59.455 37.037 0.00 0.00 0.00 3.85
1910 2053 7.276658 GTCAGATGTTCGTTCAGTAAGATCAAT 59.723 37.037 0.00 0.00 30.05 2.57
1926 2069 3.924144 AGAAGCAGAGTGTCAGATGTTC 58.076 45.455 0.00 0.00 0.00 3.18
2259 2404 3.446442 AGAATGGTCACCTTGCTGAAT 57.554 42.857 0.00 0.00 0.00 2.57
2388 2540 1.449246 GCACAGTAGGAGGCAGCAG 60.449 63.158 0.00 0.00 0.00 4.24
2534 2686 7.383572 CCATCACTTACTTGATTAGATTCCTCG 59.616 40.741 0.00 0.00 33.74 4.63
2547 2699 3.355378 TGGGCAATCCATCACTTACTTG 58.645 45.455 0.00 0.00 41.46 3.16
2587 2739 1.067635 GCCCAGCAAAACATCATTCGT 60.068 47.619 0.00 0.00 0.00 3.85
2606 2758 9.591792 AAAAGAAAATATGGAGAAATAGCAAGC 57.408 29.630 0.00 0.00 0.00 4.01
2667 2819 3.107601 CATTCTCACCTCTTCCCTGGTA 58.892 50.000 0.00 0.00 34.79 3.25
2699 2851 3.141398 GTCAGGAGCTTCATTGTTGTCA 58.859 45.455 0.00 0.00 0.00 3.58
2819 2971 6.892658 ACATACTCATCTAGTGGATCAGTC 57.107 41.667 0.00 0.00 37.05 3.51
2875 3037 9.758021 TTTCCATGAGGATAAATGCATATATGT 57.242 29.630 14.14 0.00 45.26 2.29
2886 3048 9.123902 CACATAATCTGTTTCCATGAGGATAAA 57.876 33.333 0.00 0.00 39.01 1.40
2888 3050 8.033178 TCACATAATCTGTTTCCATGAGGATA 57.967 34.615 0.00 0.00 39.01 2.59
2889 3051 6.903516 TCACATAATCTGTTTCCATGAGGAT 58.096 36.000 0.00 0.00 39.01 3.24
2891 3053 7.578310 AATCACATAATCTGTTTCCATGAGG 57.422 36.000 0.00 0.00 35.29 3.86
2909 3071 9.431887 GGAAGTAATAAGTCAGTACAAATCACA 57.568 33.333 0.00 0.00 29.93 3.58
2910 3072 8.880750 GGGAAGTAATAAGTCAGTACAAATCAC 58.119 37.037 0.00 0.00 29.93 3.06
2983 3148 2.124411 ACCGGTATATTCCAAGCCTGT 58.876 47.619 4.49 0.00 0.00 4.00
3064 3229 3.829886 TCTTTCATTGCGAACATGACC 57.170 42.857 0.00 0.00 31.73 4.02
3115 3280 1.734465 CTGTCGGAATGGAAAGACTGC 59.266 52.381 0.00 0.00 34.92 4.40
3126 3291 5.129485 AGAACCTTATGTGATCTGTCGGAAT 59.871 40.000 0.00 0.00 0.00 3.01
3129 3294 4.392921 AGAACCTTATGTGATCTGTCGG 57.607 45.455 0.00 0.00 0.00 4.79
3163 3328 3.718956 CAACTCCCAGGGAAAGATCCTAT 59.281 47.826 10.32 0.00 45.77 2.57
3283 3448 2.236644 AGATGCAGAGCAATCTGTCAGT 59.763 45.455 7.07 0.00 43.62 3.41
3462 3627 4.389992 CGCAAAAGCAAGACAGAGATCTTA 59.610 41.667 0.00 0.00 36.78 2.10
3467 3632 2.138320 CTCGCAAAAGCAAGACAGAGA 58.862 47.619 0.00 0.00 0.00 3.10
3510 3675 2.834638 AGTCCCATCCTGGAAATTGG 57.165 50.000 0.00 3.94 40.96 3.16
3673 3838 2.965572 TCAAAGCCATGCATAAAGCC 57.034 45.000 0.00 0.00 44.83 4.35
3816 3983 9.546428 AAATCTTTCTTGTTTTCTTATTGGGTG 57.454 29.630 0.00 0.00 0.00 4.61
3954 4123 4.084066 TGCAAATGTTGTCACATCGTAGAC 60.084 41.667 0.00 0.00 43.34 2.59
3960 4129 4.624024 CCTGATTGCAAATGTTGTCACATC 59.376 41.667 1.71 0.00 43.34 3.06
4050 4226 4.691860 AAGACTTTCAAGAATGGATGCG 57.308 40.909 0.00 0.00 0.00 4.73
4067 4243 1.333619 TGTGCGGCTTTCTGAAAAGAC 59.666 47.619 4.18 0.00 45.59 3.01
4092 4268 9.742144 TTTACCTGTATTGCCTATCTACAAAAA 57.258 29.630 0.00 0.00 0.00 1.94
4221 4410 3.708403 AATGATGAGACCTGCACTTGA 57.292 42.857 0.00 0.00 0.00 3.02
4266 4456 4.295141 TGGAATAAGTTGAACCCGATGT 57.705 40.909 0.00 0.00 0.00 3.06
4267 4457 5.221048 GGAATGGAATAAGTTGAACCCGATG 60.221 44.000 0.00 0.00 0.00 3.84
4268 4458 4.887655 GGAATGGAATAAGTTGAACCCGAT 59.112 41.667 0.00 0.00 0.00 4.18
4269 4459 4.263550 TGGAATGGAATAAGTTGAACCCGA 60.264 41.667 0.00 0.00 0.00 5.14
4273 4463 9.657419 AATTTGATGGAATGGAATAAGTTGAAC 57.343 29.630 0.00 0.00 0.00 3.18
4318 4510 5.452636 CCATCTAAGCCTCTAAGGAGTTGAC 60.453 48.000 0.00 0.00 37.67 3.18
4352 4546 5.094387 AGAAAAGGAATCAGGTGGTCTCTA 58.906 41.667 0.00 0.00 0.00 2.43
4374 4568 0.543749 CAAAGGTAGCCAGGAGGGAG 59.456 60.000 0.00 0.00 40.01 4.30
4419 4613 1.359459 GAGCACCCTAAACGCCTTCG 61.359 60.000 0.00 0.00 42.43 3.79
4420 4614 0.321298 TGAGCACCCTAAACGCCTTC 60.321 55.000 0.00 0.00 0.00 3.46
4421 4615 0.321653 CTGAGCACCCTAAACGCCTT 60.322 55.000 0.00 0.00 0.00 4.35
4425 4619 0.736325 CGTCCTGAGCACCCTAAACG 60.736 60.000 0.00 0.00 0.00 3.60
4447 4641 1.376683 GGCATGCCTGGACGTTACA 60.377 57.895 29.98 0.00 0.00 2.41
4473 4667 1.663739 GCACTGGACACTACGGACA 59.336 57.895 0.00 0.00 0.00 4.02
4508 4702 2.082140 ACATATGGGGAGTACTGCGA 57.918 50.000 8.41 0.00 0.00 5.10
4838 5032 6.169800 TGAAAGTGAACCATGATGAACGATA 58.830 36.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.