Multiple sequence alignment - TraesCS6D01G096100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G096100 chr6D 100.000 2766 0 0 1 2766 60382495 60385260 0.000000e+00 5108
1 TraesCS6D01G096100 chr6D 83.598 189 19 1 1929 2105 60500986 60500798 1.700000e-37 167
2 TraesCS6D01G096100 chr6A 94.251 1409 52 15 782 2168 76976003 76977404 0.000000e+00 2126
3 TraesCS6D01G096100 chr6A 88.128 438 47 4 1 437 76964318 76964751 1.470000e-142 516
4 TraesCS6D01G096100 chr6A 92.308 221 16 1 2547 2766 76990344 76990564 2.070000e-81 313
5 TraesCS6D01G096100 chr6A 75.731 342 59 13 77 409 208949084 208948758 1.720000e-32 150
6 TraesCS6D01G096100 chr6B 90.754 1406 81 18 774 2164 134467730 134469101 0.000000e+00 1831
7 TraesCS6D01G096100 chr6B 83.296 443 44 14 1 442 134467318 134467731 5.590000e-102 381
8 TraesCS6D01G096100 chr1B 83.756 591 86 9 2182 2766 573759680 573759094 4.030000e-153 551
9 TraesCS6D01G096100 chr1B 91.098 337 29 1 440 775 179605692 179606028 3.250000e-124 455
10 TraesCS6D01G096100 chr1B 91.045 335 30 0 441 775 191018732 191018398 1.170000e-123 453
11 TraesCS6D01G096100 chr7D 81.834 589 82 13 2186 2766 619047325 619046754 3.220000e-129 472
12 TraesCS6D01G096100 chr7D 80.591 474 68 12 2246 2709 489005795 489005336 7.330000e-91 344
13 TraesCS6D01G096100 chr7D 77.890 493 91 12 2189 2670 461093401 461092916 9.690000e-75 291
14 TraesCS6D01G096100 chr3D 91.445 339 27 2 440 776 265495960 265495622 5.400000e-127 464
15 TraesCS6D01G096100 chr2A 82.979 517 81 6 2253 2766 678452266 678451754 6.980000e-126 460
16 TraesCS6D01G096100 chr2A 83.288 365 56 4 2187 2551 651511832 651512191 5.710000e-87 331
17 TraesCS6D01G096100 chr2A 84.579 214 31 2 2310 2523 751532547 751532336 7.760000e-51 211
18 TraesCS6D01G096100 chr3B 81.738 564 82 11 2221 2766 395862455 395863015 4.200000e-123 451
19 TraesCS6D01G096100 chr3B 79.474 570 88 17 2221 2766 762409288 762409852 7.230000e-101 377
20 TraesCS6D01G096100 chr3B 78.251 423 86 6 5 425 822821936 822821518 1.630000e-67 267
21 TraesCS6D01G096100 chr2B 90.801 337 29 2 441 775 175077484 175077820 1.510000e-122 449
22 TraesCS6D01G096100 chr4A 90.774 336 30 1 441 775 721078013 721077678 5.430000e-122 448
23 TraesCS6D01G096100 chr7B 90.560 339 29 3 438 775 88626034 88626370 1.950000e-121 446
24 TraesCS6D01G096100 chr7B 90.265 339 30 3 438 775 627797016 627797352 9.090000e-120 440
25 TraesCS6D01G096100 chr1D 90.533 338 30 2 440 775 123377763 123378100 1.950000e-121 446
26 TraesCS6D01G096100 chr1D 78.908 403 84 1 1 402 386707971 386708373 3.510000e-69 272
27 TraesCS6D01G096100 chr3A 89.489 352 34 3 426 775 297774365 297774015 2.530000e-120 442
28 TraesCS6D01G096100 chr5D 80.464 517 93 8 2213 2726 559830795 559830284 3.340000e-104 388
29 TraesCS6D01G096100 chr5D 78.347 605 88 15 2187 2766 482892333 482892919 4.380000e-93 351
30 TraesCS6D01G096100 chr5D 78.689 549 80 11 2187 2708 101769019 101769557 5.710000e-87 331
31 TraesCS6D01G096100 chr5D 79.648 398 80 1 6 402 432981116 432981513 4.510000e-73 285
32 TraesCS6D01G096100 chr7A 78.748 607 88 22 2187 2766 162599212 162599804 4.350000e-98 368
33 TraesCS6D01G096100 chr7A 84.574 188 23 5 1 184 477221728 477221543 6.090000e-42 182
34 TraesCS6D01G096100 chr4D 83.465 381 57 3 2392 2766 39977296 39976916 1.580000e-92 350
35 TraesCS6D01G096100 chr1A 76.941 425 91 5 1 424 11929452 11929870 4.610000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G096100 chr6D 60382495 60385260 2765 False 5108 5108 100.000 1 2766 1 chr6D.!!$F1 2765
1 TraesCS6D01G096100 chr6A 76976003 76977404 1401 False 2126 2126 94.251 782 2168 1 chr6A.!!$F2 1386
2 TraesCS6D01G096100 chr6B 134467318 134469101 1783 False 1106 1831 87.025 1 2164 2 chr6B.!!$F1 2163
3 TraesCS6D01G096100 chr1B 573759094 573759680 586 True 551 551 83.756 2182 2766 1 chr1B.!!$R2 584
4 TraesCS6D01G096100 chr7D 619046754 619047325 571 True 472 472 81.834 2186 2766 1 chr7D.!!$R3 580
5 TraesCS6D01G096100 chr2A 678451754 678452266 512 True 460 460 82.979 2253 2766 1 chr2A.!!$R1 513
6 TraesCS6D01G096100 chr3B 395862455 395863015 560 False 451 451 81.738 2221 2766 1 chr3B.!!$F1 545
7 TraesCS6D01G096100 chr3B 762409288 762409852 564 False 377 377 79.474 2221 2766 1 chr3B.!!$F2 545
8 TraesCS6D01G096100 chr5D 559830284 559830795 511 True 388 388 80.464 2213 2726 1 chr5D.!!$R1 513
9 TraesCS6D01G096100 chr5D 482892333 482892919 586 False 351 351 78.347 2187 2766 1 chr5D.!!$F3 579
10 TraesCS6D01G096100 chr5D 101769019 101769557 538 False 331 331 78.689 2187 2708 1 chr5D.!!$F1 521
11 TraesCS6D01G096100 chr7A 162599212 162599804 592 False 368 368 78.748 2187 2766 1 chr7A.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 491 0.035820 TTACTTCCGGCATGGTGACC 60.036 55.0 0.00 0.0 39.52 4.02 F
931 935 0.040942 TTGAGGCTCTCAGCTCTCCT 59.959 55.0 16.72 0.0 41.75 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1748 0.032130 CAGGCTGCGGATATGTACGT 59.968 55.0 0.00 0.0 32.98 3.57 R
2540 2657 0.385751 GGAAGATGAGGACGCGATGA 59.614 55.0 15.93 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.269178 GAGGCTTCTGGAGAATTGACTG 58.731 50.000 0.00 0.00 33.01 3.51
54 55 0.517316 GAATTGACTGGTGTGCGGAC 59.483 55.000 0.00 0.00 0.00 4.79
59 60 2.029073 CTGGTGTGCGGACGTTCT 59.971 61.111 1.60 0.00 0.00 3.01
62 63 2.308039 GGTGTGCGGACGTTCTCAC 61.308 63.158 10.10 10.10 0.00 3.51
91 92 6.704050 GGAAGATCTAGCACTTAGATTTGGTC 59.296 42.308 0.00 0.00 46.72 4.02
108 109 2.093711 TGGTCTATCCATGACACAACGG 60.094 50.000 0.00 0.00 41.93 4.44
112 113 3.430862 CCATGACACAACGGCGGG 61.431 66.667 13.24 5.43 0.00 6.13
131 132 4.261741 GCGGGATGCAATTGACTTATCATT 60.262 41.667 10.34 0.00 45.45 2.57
132 133 5.455392 CGGGATGCAATTGACTTATCATTC 58.545 41.667 10.34 0.42 33.85 2.67
133 134 5.008911 CGGGATGCAATTGACTTATCATTCA 59.991 40.000 10.34 0.00 33.85 2.57
134 135 6.294342 CGGGATGCAATTGACTTATCATTCAT 60.294 38.462 10.34 0.00 33.85 2.57
135 136 7.439381 GGGATGCAATTGACTTATCATTCATT 58.561 34.615 10.34 0.00 33.85 2.57
136 137 7.597743 GGGATGCAATTGACTTATCATTCATTC 59.402 37.037 10.34 0.00 33.85 2.67
137 138 8.358148 GGATGCAATTGACTTATCATTCATTCT 58.642 33.333 10.34 0.00 33.85 2.40
152 153 8.455903 TCATTCATTCTGATAATTTGGAGGTC 57.544 34.615 0.00 0.00 0.00 3.85
165 166 2.957474 TGGAGGTCATCGATACCATGA 58.043 47.619 19.59 4.56 39.64 3.07
182 183 3.494626 CCATGAATAATGAAGGACGGTCG 59.505 47.826 1.43 0.00 38.72 4.79
187 188 2.521958 AATGAAGGACGGTCGGCAGG 62.522 60.000 1.43 0.00 0.00 4.85
192 193 2.577059 GACGGTCGGCAGGAATGA 59.423 61.111 0.00 0.00 0.00 2.57
196 197 2.264794 GTCGGCAGGAATGACGGT 59.735 61.111 3.34 0.00 41.36 4.83
252 253 9.658799 CTTGTGATCTTCTTATTTCTAGGTTCA 57.341 33.333 0.00 0.00 0.00 3.18
293 294 7.054491 AGCAAATAAGTTTGTCCATGAGTTT 57.946 32.000 0.00 0.00 45.14 2.66
297 298 7.759489 AATAAGTTTGTCCATGAGTTTGCTA 57.241 32.000 0.00 0.00 0.00 3.49
299 300 4.973168 AGTTTGTCCATGAGTTTGCTAGA 58.027 39.130 0.00 0.00 0.00 2.43
300 301 5.564550 AGTTTGTCCATGAGTTTGCTAGAT 58.435 37.500 0.00 0.00 0.00 1.98
302 303 5.885230 TTGTCCATGAGTTTGCTAGATTG 57.115 39.130 0.00 0.00 0.00 2.67
303 304 5.164620 TGTCCATGAGTTTGCTAGATTGA 57.835 39.130 0.00 0.00 0.00 2.57
305 306 5.181748 GTCCATGAGTTTGCTAGATTGACT 58.818 41.667 0.00 0.00 0.00 3.41
306 307 6.070824 TGTCCATGAGTTTGCTAGATTGACTA 60.071 38.462 0.00 0.00 0.00 2.59
307 308 6.818644 GTCCATGAGTTTGCTAGATTGACTAA 59.181 38.462 0.00 0.00 0.00 2.24
308 309 7.334421 GTCCATGAGTTTGCTAGATTGACTAAA 59.666 37.037 0.00 0.00 0.00 1.85
309 310 8.049117 TCCATGAGTTTGCTAGATTGACTAAAT 58.951 33.333 0.00 0.00 0.00 1.40
310 311 8.680903 CCATGAGTTTGCTAGATTGACTAAATT 58.319 33.333 0.00 0.00 0.00 1.82
314 315 9.561270 GAGTTTGCTAGATTGACTAAATTTTCC 57.439 33.333 0.00 0.00 0.00 3.13
315 316 9.301897 AGTTTGCTAGATTGACTAAATTTTCCT 57.698 29.630 0.00 0.00 0.00 3.36
316 317 9.561270 GTTTGCTAGATTGACTAAATTTTCCTC 57.439 33.333 0.00 0.00 0.00 3.71
317 318 9.520515 TTTGCTAGATTGACTAAATTTTCCTCT 57.479 29.630 0.00 0.00 0.00 3.69
339 340 6.913170 TCTATTGTTCATTGTTTTGAGGAGC 58.087 36.000 0.00 0.00 0.00 4.70
340 341 4.320608 TTGTTCATTGTTTTGAGGAGCC 57.679 40.909 0.00 0.00 0.00 4.70
349 350 4.335416 TGTTTTGAGGAGCCTCTAAATGG 58.665 43.478 22.50 0.00 44.59 3.16
379 380 9.725019 TGTACCATTCCTCATAATTGATGTATC 57.275 33.333 0.00 0.00 36.84 2.24
386 387 8.893219 TCCTCATAATTGATGTATCTGTTGTC 57.107 34.615 0.00 0.00 36.84 3.18
459 461 9.860393 AGTATTATACTCCCTCCATTCCTTTAT 57.140 33.333 0.00 0.00 32.47 1.40
460 462 9.892130 GTATTATACTCCCTCCATTCCTTTATG 57.108 37.037 0.00 0.00 0.00 1.90
461 463 7.947782 TTATACTCCCTCCATTCCTTTATGT 57.052 36.000 0.00 0.00 0.00 2.29
462 464 9.629649 ATTATACTCCCTCCATTCCTTTATGTA 57.370 33.333 0.00 0.00 0.00 2.29
463 465 7.947782 ATACTCCCTCCATTCCTTTATGTAA 57.052 36.000 0.00 0.00 0.00 2.41
464 466 6.253946 ACTCCCTCCATTCCTTTATGTAAG 57.746 41.667 0.00 0.00 0.00 2.34
479 481 8.361592 CTTTATGTAAGGTGTATTACTTCCGG 57.638 38.462 0.00 0.00 36.73 5.14
480 482 4.127566 TGTAAGGTGTATTACTTCCGGC 57.872 45.455 0.00 0.00 36.73 6.13
481 483 3.514706 TGTAAGGTGTATTACTTCCGGCA 59.485 43.478 0.00 0.00 36.73 5.69
482 484 3.926058 AAGGTGTATTACTTCCGGCAT 57.074 42.857 0.00 0.00 0.00 4.40
483 485 3.194005 AGGTGTATTACTTCCGGCATG 57.806 47.619 0.00 0.00 0.00 4.06
484 486 2.158813 AGGTGTATTACTTCCGGCATGG 60.159 50.000 0.00 0.00 40.09 3.66
485 487 2.420967 GGTGTATTACTTCCGGCATGGT 60.421 50.000 0.00 0.00 39.52 3.55
486 488 2.612212 GTGTATTACTTCCGGCATGGTG 59.388 50.000 0.00 0.00 39.52 4.17
487 489 2.502130 TGTATTACTTCCGGCATGGTGA 59.498 45.455 0.00 0.00 39.52 4.02
488 490 2.038387 ATTACTTCCGGCATGGTGAC 57.962 50.000 0.00 0.00 39.52 3.67
489 491 0.035820 TTACTTCCGGCATGGTGACC 60.036 55.000 0.00 0.00 39.52 4.02
490 492 1.195442 TACTTCCGGCATGGTGACCA 61.195 55.000 6.84 6.84 39.52 4.02
491 493 1.303236 CTTCCGGCATGGTGACCAA 60.303 57.895 9.06 0.00 36.95 3.67
492 494 1.303236 TTCCGGCATGGTGACCAAG 60.303 57.895 9.06 5.15 36.95 3.61
493 495 1.773856 TTCCGGCATGGTGACCAAGA 61.774 55.000 9.06 0.00 36.95 3.02
494 496 1.077501 CCGGCATGGTGACCAAGAT 60.078 57.895 9.06 0.00 36.95 2.40
495 497 0.180171 CCGGCATGGTGACCAAGATA 59.820 55.000 9.06 0.00 36.95 1.98
496 498 1.299541 CGGCATGGTGACCAAGATAC 58.700 55.000 9.06 0.00 36.95 2.24
497 499 1.406751 CGGCATGGTGACCAAGATACA 60.407 52.381 9.06 0.00 36.95 2.29
498 500 2.746142 CGGCATGGTGACCAAGATACAT 60.746 50.000 9.06 0.00 36.95 2.29
499 501 3.494223 CGGCATGGTGACCAAGATACATA 60.494 47.826 9.06 0.00 36.95 2.29
500 502 4.460263 GGCATGGTGACCAAGATACATAA 58.540 43.478 9.06 0.00 36.95 1.90
501 503 5.072741 GGCATGGTGACCAAGATACATAAT 58.927 41.667 9.06 0.00 36.95 1.28
502 504 5.536161 GGCATGGTGACCAAGATACATAATT 59.464 40.000 9.06 0.00 36.95 1.40
503 505 6.714810 GGCATGGTGACCAAGATACATAATTA 59.285 38.462 9.06 0.00 36.95 1.40
504 506 7.394359 GGCATGGTGACCAAGATACATAATTAT 59.606 37.037 9.06 0.00 36.95 1.28
505 507 9.448438 GCATGGTGACCAAGATACATAATTATA 57.552 33.333 9.06 0.00 36.95 0.98
508 510 9.772973 TGGTGACCAAGATACATAATTATACAC 57.227 33.333 0.00 0.00 0.00 2.90
509 511 9.772973 GGTGACCAAGATACATAATTATACACA 57.227 33.333 0.00 0.00 0.00 3.72
529 531 9.920946 ATACACATGTTATGAGGAAATTAACCT 57.079 29.630 0.00 4.11 40.80 3.50
530 532 8.650143 ACACATGTTATGAGGAAATTAACCTT 57.350 30.769 0.00 0.00 37.93 3.50
531 533 8.522830 ACACATGTTATGAGGAAATTAACCTTG 58.477 33.333 0.00 2.14 37.93 3.61
532 534 7.975616 CACATGTTATGAGGAAATTAACCTTGG 59.024 37.037 0.00 0.00 37.93 3.61
533 535 6.524101 TGTTATGAGGAAATTAACCTTGGC 57.476 37.500 5.73 0.00 37.93 4.52
534 536 6.013379 TGTTATGAGGAAATTAACCTTGGCA 58.987 36.000 5.73 0.00 37.93 4.92
535 537 6.495181 TGTTATGAGGAAATTAACCTTGGCAA 59.505 34.615 0.00 0.00 37.93 4.52
536 538 7.015682 TGTTATGAGGAAATTAACCTTGGCAAA 59.984 33.333 0.00 0.00 37.93 3.68
537 539 5.878406 TGAGGAAATTAACCTTGGCAAAA 57.122 34.783 0.00 0.00 37.93 2.44
538 540 6.432403 TGAGGAAATTAACCTTGGCAAAAT 57.568 33.333 0.00 0.00 37.93 1.82
539 541 6.463360 TGAGGAAATTAACCTTGGCAAAATC 58.537 36.000 0.00 0.00 37.93 2.17
540 542 6.042552 TGAGGAAATTAACCTTGGCAAAATCA 59.957 34.615 0.00 0.00 37.93 2.57
541 543 7.019656 AGGAAATTAACCTTGGCAAAATCAT 57.980 32.000 0.00 0.00 33.55 2.45
542 544 7.460910 AGGAAATTAACCTTGGCAAAATCATT 58.539 30.769 0.00 0.00 33.55 2.57
543 545 7.391275 AGGAAATTAACCTTGGCAAAATCATTG 59.609 33.333 0.00 0.00 33.55 2.82
544 546 7.390162 GGAAATTAACCTTGGCAAAATCATTGA 59.610 33.333 0.00 0.00 0.00 2.57
545 547 8.866970 AAATTAACCTTGGCAAAATCATTGAT 57.133 26.923 0.00 0.00 0.00 2.57
546 548 8.866970 AATTAACCTTGGCAAAATCATTGATT 57.133 26.923 6.06 6.06 33.25 2.57
547 549 7.670009 TTAACCTTGGCAAAATCATTGATTG 57.330 32.000 12.50 4.34 32.14 2.67
548 550 4.581868 ACCTTGGCAAAATCATTGATTGG 58.418 39.130 12.50 9.72 32.14 3.16
549 551 3.375922 CCTTGGCAAAATCATTGATTGGC 59.624 43.478 20.06 20.06 46.34 4.52
551 553 1.935199 GGCAAAATCATTGATTGGCGG 59.065 47.619 20.82 10.65 39.36 6.13
552 554 1.328374 GCAAAATCATTGATTGGCGGC 59.672 47.619 12.50 0.00 32.14 6.53
553 555 2.619147 CAAAATCATTGATTGGCGGCA 58.381 42.857 7.97 7.97 32.14 5.69
554 556 3.001414 CAAAATCATTGATTGGCGGCAA 58.999 40.909 27.57 27.57 32.14 4.52
555 557 2.298411 AATCATTGATTGGCGGCAAC 57.702 45.000 27.95 19.85 30.42 4.17
556 558 1.477553 ATCATTGATTGGCGGCAACT 58.522 45.000 27.95 15.82 0.00 3.16
557 559 2.121291 TCATTGATTGGCGGCAACTA 57.879 45.000 27.95 15.81 0.00 2.24
558 560 2.441410 TCATTGATTGGCGGCAACTAA 58.559 42.857 27.95 23.10 0.00 2.24
559 561 2.822561 TCATTGATTGGCGGCAACTAAA 59.177 40.909 27.95 20.24 0.00 1.85
560 562 3.446873 TCATTGATTGGCGGCAACTAAAT 59.553 39.130 27.95 21.47 0.00 1.40
561 563 3.502191 TTGATTGGCGGCAACTAAATC 57.498 42.857 27.95 19.72 0.00 2.17
562 564 2.441410 TGATTGGCGGCAACTAAATCA 58.559 42.857 27.95 22.10 35.95 2.57
563 565 3.023119 TGATTGGCGGCAACTAAATCAT 58.977 40.909 27.95 8.36 34.45 2.45
564 566 3.446873 TGATTGGCGGCAACTAAATCATT 59.553 39.130 27.95 7.53 34.45 2.57
565 567 4.642437 TGATTGGCGGCAACTAAATCATTA 59.358 37.500 27.95 2.07 34.45 1.90
566 568 4.630894 TTGGCGGCAACTAAATCATTAG 57.369 40.909 21.79 0.00 43.48 1.73
567 569 2.948979 TGGCGGCAACTAAATCATTAGG 59.051 45.455 10.22 0.00 42.39 2.69
568 570 2.287608 GGCGGCAACTAAATCATTAGGC 60.288 50.000 3.07 0.00 42.39 3.93
569 571 2.357637 GCGGCAACTAAATCATTAGGCA 59.642 45.455 0.00 0.00 42.39 4.75
570 572 3.181491 GCGGCAACTAAATCATTAGGCAA 60.181 43.478 0.00 0.00 42.39 4.52
571 573 4.601019 CGGCAACTAAATCATTAGGCAAG 58.399 43.478 1.17 0.00 42.39 4.01
572 574 4.498009 CGGCAACTAAATCATTAGGCAAGG 60.498 45.833 1.17 0.00 42.39 3.61
573 575 4.644685 GGCAACTAAATCATTAGGCAAGGA 59.355 41.667 1.17 0.00 42.39 3.36
574 576 5.127031 GGCAACTAAATCATTAGGCAAGGAA 59.873 40.000 1.17 0.00 42.39 3.36
575 577 6.350949 GGCAACTAAATCATTAGGCAAGGAAA 60.351 38.462 1.17 0.00 42.39 3.13
576 578 6.753744 GCAACTAAATCATTAGGCAAGGAAAG 59.246 38.462 1.17 0.00 42.39 2.62
577 579 7.577616 GCAACTAAATCATTAGGCAAGGAAAGT 60.578 37.037 1.17 0.00 42.39 2.66
578 580 8.956426 CAACTAAATCATTAGGCAAGGAAAGTA 58.044 33.333 1.17 0.00 42.39 2.24
579 581 8.738645 ACTAAATCATTAGGCAAGGAAAGTAG 57.261 34.615 1.17 0.00 42.39 2.57
580 582 8.548877 ACTAAATCATTAGGCAAGGAAAGTAGA 58.451 33.333 1.17 0.00 42.39 2.59
581 583 9.396022 CTAAATCATTAGGCAAGGAAAGTAGAA 57.604 33.333 0.00 0.00 35.81 2.10
582 584 7.872113 AATCATTAGGCAAGGAAAGTAGAAG 57.128 36.000 0.00 0.00 0.00 2.85
583 585 6.620877 TCATTAGGCAAGGAAAGTAGAAGA 57.379 37.500 0.00 0.00 0.00 2.87
584 586 7.200434 TCATTAGGCAAGGAAAGTAGAAGAT 57.800 36.000 0.00 0.00 0.00 2.40
585 587 8.319057 TCATTAGGCAAGGAAAGTAGAAGATA 57.681 34.615 0.00 0.00 0.00 1.98
586 588 8.768397 TCATTAGGCAAGGAAAGTAGAAGATAA 58.232 33.333 0.00 0.00 0.00 1.75
587 589 9.396022 CATTAGGCAAGGAAAGTAGAAGATAAA 57.604 33.333 0.00 0.00 0.00 1.40
588 590 8.788325 TTAGGCAAGGAAAGTAGAAGATAAAC 57.212 34.615 0.00 0.00 0.00 2.01
589 591 6.779860 AGGCAAGGAAAGTAGAAGATAAACA 58.220 36.000 0.00 0.00 0.00 2.83
590 592 6.655425 AGGCAAGGAAAGTAGAAGATAAACAC 59.345 38.462 0.00 0.00 0.00 3.32
591 593 6.430000 GGCAAGGAAAGTAGAAGATAAACACA 59.570 38.462 0.00 0.00 0.00 3.72
592 594 7.040686 GGCAAGGAAAGTAGAAGATAAACACAA 60.041 37.037 0.00 0.00 0.00 3.33
593 595 8.515414 GCAAGGAAAGTAGAAGATAAACACAAT 58.485 33.333 0.00 0.00 0.00 2.71
595 597 9.793259 AAGGAAAGTAGAAGATAAACACAATCA 57.207 29.630 0.00 0.00 0.00 2.57
596 598 9.442047 AGGAAAGTAGAAGATAAACACAATCAG 57.558 33.333 0.00 0.00 0.00 2.90
597 599 8.669243 GGAAAGTAGAAGATAAACACAATCAGG 58.331 37.037 0.00 0.00 0.00 3.86
598 600 9.436957 GAAAGTAGAAGATAAACACAATCAGGA 57.563 33.333 0.00 0.00 0.00 3.86
599 601 9.442047 AAAGTAGAAGATAAACACAATCAGGAG 57.558 33.333 0.00 0.00 0.00 3.69
600 602 8.367660 AGTAGAAGATAAACACAATCAGGAGA 57.632 34.615 0.00 0.00 0.00 3.71
601 603 8.986991 AGTAGAAGATAAACACAATCAGGAGAT 58.013 33.333 0.00 0.00 35.53 2.75
604 606 9.206690 AGAAGATAAACACAATCAGGAGATAGA 57.793 33.333 0.00 0.00 33.08 1.98
605 607 9.995003 GAAGATAAACACAATCAGGAGATAGAT 57.005 33.333 0.00 0.00 33.08 1.98
611 613 7.296628 ACACAATCAGGAGATAGATACTTCC 57.703 40.000 0.00 0.00 33.08 3.46
612 614 6.841229 ACACAATCAGGAGATAGATACTTCCA 59.159 38.462 0.00 0.00 33.08 3.53
613 615 7.512058 ACACAATCAGGAGATAGATACTTCCAT 59.488 37.037 0.00 0.00 33.08 3.41
614 616 8.373981 CACAATCAGGAGATAGATACTTCCATT 58.626 37.037 0.00 0.00 33.08 3.16
615 617 8.943085 ACAATCAGGAGATAGATACTTCCATTT 58.057 33.333 0.00 0.00 33.08 2.32
616 618 9.790344 CAATCAGGAGATAGATACTTCCATTTT 57.210 33.333 0.00 0.00 33.08 1.82
641 643 9.467258 TTTTCTTTTTACAAGAAGAGATGCATG 57.533 29.630 2.46 0.00 37.54 4.06
642 644 6.615088 TCTTTTTACAAGAAGAGATGCATGC 58.385 36.000 11.82 11.82 0.00 4.06
643 645 5.963176 TTTTACAAGAAGAGATGCATGCA 57.037 34.783 25.04 25.04 0.00 3.96
644 646 5.963176 TTTACAAGAAGAGATGCATGCAA 57.037 34.783 26.68 8.49 0.00 4.08
645 647 6.519679 TTTACAAGAAGAGATGCATGCAAT 57.480 33.333 26.68 16.79 0.00 3.56
646 648 4.634184 ACAAGAAGAGATGCATGCAATC 57.366 40.909 26.68 24.04 0.00 2.67
647 649 3.064958 ACAAGAAGAGATGCATGCAATCG 59.935 43.478 26.68 13.98 0.00 3.34
648 650 2.219458 AGAAGAGATGCATGCAATCGG 58.781 47.619 26.68 0.00 0.00 4.18
649 651 1.266175 GAAGAGATGCATGCAATCGGG 59.734 52.381 26.68 0.00 0.00 5.14
650 652 0.536687 AGAGATGCATGCAATCGGGG 60.537 55.000 26.68 0.00 0.00 5.73
651 653 1.521450 GAGATGCATGCAATCGGGGG 61.521 60.000 26.68 0.00 0.00 5.40
652 654 1.529010 GATGCATGCAATCGGGGGA 60.529 57.895 26.68 0.00 0.00 4.81
653 655 1.521450 GATGCATGCAATCGGGGGAG 61.521 60.000 26.68 0.00 0.00 4.30
654 656 1.998444 ATGCATGCAATCGGGGGAGA 61.998 55.000 26.68 0.00 0.00 3.71
655 657 1.895707 GCATGCAATCGGGGGAGAG 60.896 63.158 14.21 0.00 0.00 3.20
656 658 1.832219 CATGCAATCGGGGGAGAGA 59.168 57.895 0.00 0.00 0.00 3.10
657 659 0.399454 CATGCAATCGGGGGAGAGAT 59.601 55.000 0.00 0.00 0.00 2.75
658 660 1.625315 CATGCAATCGGGGGAGAGATA 59.375 52.381 0.00 0.00 0.00 1.98
659 661 1.048601 TGCAATCGGGGGAGAGATAC 58.951 55.000 0.00 0.00 0.00 2.24
660 662 1.343069 GCAATCGGGGGAGAGATACT 58.657 55.000 0.00 0.00 0.00 2.12
661 663 1.273886 GCAATCGGGGGAGAGATACTC 59.726 57.143 0.00 0.00 44.24 2.59
662 664 2.883026 CAATCGGGGGAGAGATACTCT 58.117 52.381 0.67 0.67 44.28 3.24
694 696 9.693739 TTTTAAAGGCTAATGATGGAGTTATGA 57.306 29.630 0.00 0.00 0.00 2.15
695 697 8.908786 TTAAAGGCTAATGATGGAGTTATGAG 57.091 34.615 0.00 0.00 0.00 2.90
696 698 5.495926 AGGCTAATGATGGAGTTATGAGG 57.504 43.478 0.00 0.00 0.00 3.86
697 699 5.158141 AGGCTAATGATGGAGTTATGAGGA 58.842 41.667 0.00 0.00 0.00 3.71
698 700 5.608437 AGGCTAATGATGGAGTTATGAGGAA 59.392 40.000 0.00 0.00 0.00 3.36
699 701 6.274200 AGGCTAATGATGGAGTTATGAGGAAT 59.726 38.462 0.00 0.00 0.00 3.01
700 702 6.944862 GGCTAATGATGGAGTTATGAGGAATT 59.055 38.462 0.00 0.00 0.00 2.17
701 703 8.103305 GGCTAATGATGGAGTTATGAGGAATTA 58.897 37.037 0.00 0.00 0.00 1.40
702 704 9.160496 GCTAATGATGGAGTTATGAGGAATTAG 57.840 37.037 0.00 0.00 0.00 1.73
705 707 9.790344 AATGATGGAGTTATGAGGAATTAGAAG 57.210 33.333 0.00 0.00 0.00 2.85
706 708 8.553085 TGATGGAGTTATGAGGAATTAGAAGA 57.447 34.615 0.00 0.00 0.00 2.87
707 709 8.992349 TGATGGAGTTATGAGGAATTAGAAGAA 58.008 33.333 0.00 0.00 0.00 2.52
708 710 9.838339 GATGGAGTTATGAGGAATTAGAAGAAA 57.162 33.333 0.00 0.00 0.00 2.52
710 712 9.618890 TGGAGTTATGAGGAATTAGAAGAAATG 57.381 33.333 0.00 0.00 0.00 2.32
711 713 9.620259 GGAGTTATGAGGAATTAGAAGAAATGT 57.380 33.333 0.00 0.00 0.00 2.71
770 772 7.005709 ACATCTTATATAAAGGAACGGAGGG 57.994 40.000 0.00 0.00 0.00 4.30
771 773 6.785963 ACATCTTATATAAAGGAACGGAGGGA 59.214 38.462 0.00 0.00 0.00 4.20
772 774 6.912951 TCTTATATAAAGGAACGGAGGGAG 57.087 41.667 0.00 0.00 0.00 4.30
773 775 6.379579 TCTTATATAAAGGAACGGAGGGAGT 58.620 40.000 0.00 0.00 0.00 3.85
774 776 7.529555 TCTTATATAAAGGAACGGAGGGAGTA 58.470 38.462 0.00 0.00 0.00 2.59
778 780 3.908643 AAGGAACGGAGGGAGTAAATC 57.091 47.619 0.00 0.00 0.00 2.17
787 789 4.211374 CGGAGGGAGTAAATCGCAATTTAG 59.789 45.833 0.00 0.00 43.20 1.85
790 792 6.935208 GGAGGGAGTAAATCGCAATTTAGTAT 59.065 38.462 0.00 0.00 39.84 2.12
814 816 2.106074 CGATGTGGGCTAGCGCAAA 61.106 57.895 33.07 29.16 40.51 3.68
819 821 0.243636 GTGGGCTAGCGCAAACATTT 59.756 50.000 33.07 0.00 40.51 2.32
844 846 8.789825 TGCAACCAATATAGCAAATGAAAAAT 57.210 26.923 0.00 0.00 33.48 1.82
930 934 0.461135 CTTGAGGCTCTCAGCTCTCC 59.539 60.000 16.72 0.00 41.75 3.71
931 935 0.040942 TTGAGGCTCTCAGCTCTCCT 59.959 55.000 16.72 0.00 41.75 3.69
932 936 0.683828 TGAGGCTCTCAGCTCTCCTG 60.684 60.000 16.72 0.00 41.99 3.86
1024 1028 3.423154 CGACGAAACCAGCTGGCC 61.423 66.667 33.06 20.00 39.32 5.36
1089 1093 4.129737 GGCGTCGTCAGGCTGCTA 62.130 66.667 10.34 0.00 33.65 3.49
1386 1390 4.011517 GGGCCCTTCAACGTCCGA 62.012 66.667 17.04 0.00 0.00 4.55
1584 1613 0.520404 CGACAGTACTGGTACGTGCT 59.480 55.000 26.12 2.84 40.80 4.40
1602 1658 1.725931 GCTTGATGCAGAACCGTTTCG 60.726 52.381 0.00 0.00 42.31 3.46
1603 1659 0.237235 TTGATGCAGAACCGTTTCGC 59.763 50.000 0.00 3.38 36.78 4.70
1606 1662 0.881118 ATGCAGAACCGTTTCGCAAT 59.119 45.000 13.83 3.76 41.37 3.56
1609 1665 1.334599 GCAGAACCGTTTCGCAATGAA 60.335 47.619 5.07 0.00 36.78 2.57
1622 1678 5.725110 TCGCAATGAAATTCTCTTCTAGC 57.275 39.130 0.00 0.00 31.22 3.42
1623 1679 4.268644 TCGCAATGAAATTCTCTTCTAGCG 59.731 41.667 0.00 0.00 39.52 4.26
1624 1680 4.551603 CGCAATGAAATTCTCTTCTAGCGG 60.552 45.833 0.00 0.00 37.14 5.52
1625 1681 4.787882 GCAATGAAATTCTCTTCTAGCGGC 60.788 45.833 0.00 0.00 31.22 6.53
1626 1682 3.895232 TGAAATTCTCTTCTAGCGGCT 57.105 42.857 7.98 7.98 0.00 5.52
1627 1683 4.207891 TGAAATTCTCTTCTAGCGGCTT 57.792 40.909 8.26 0.00 0.00 4.35
1628 1684 4.184629 TGAAATTCTCTTCTAGCGGCTTC 58.815 43.478 8.26 0.00 0.00 3.86
1629 1685 4.081420 TGAAATTCTCTTCTAGCGGCTTCT 60.081 41.667 8.26 0.00 0.00 2.85
1630 1686 2.949451 TTCTCTTCTAGCGGCTTCTG 57.051 50.000 8.26 0.00 0.00 3.02
1631 1687 2.130272 TCTCTTCTAGCGGCTTCTGA 57.870 50.000 8.26 1.65 0.00 3.27
1632 1688 2.447443 TCTCTTCTAGCGGCTTCTGAA 58.553 47.619 8.26 9.86 0.00 3.02
1633 1689 2.164624 TCTCTTCTAGCGGCTTCTGAAC 59.835 50.000 8.26 0.00 0.00 3.18
1634 1690 1.135373 TCTTCTAGCGGCTTCTGAACG 60.135 52.381 8.26 5.74 0.00 3.95
1635 1691 0.885879 TTCTAGCGGCTTCTGAACGA 59.114 50.000 8.26 0.00 0.00 3.85
1636 1692 0.170561 TCTAGCGGCTTCTGAACGAC 59.829 55.000 8.26 0.00 0.00 4.34
1637 1693 0.109272 CTAGCGGCTTCTGAACGACA 60.109 55.000 8.26 0.00 0.00 4.35
1638 1694 0.530744 TAGCGGCTTCTGAACGACAT 59.469 50.000 8.26 0.00 0.00 3.06
1639 1695 0.737715 AGCGGCTTCTGAACGACATC 60.738 55.000 0.00 0.00 0.00 3.06
1640 1696 1.991430 CGGCTTCTGAACGACATCG 59.009 57.895 0.00 0.00 46.33 3.84
1641 1697 0.456142 CGGCTTCTGAACGACATCGA 60.456 55.000 8.54 0.00 43.02 3.59
1642 1698 0.992802 GGCTTCTGAACGACATCGAC 59.007 55.000 8.54 2.61 43.02 4.20
1643 1699 0.635731 GCTTCTGAACGACATCGACG 59.364 55.000 8.54 0.00 43.02 5.12
1644 1700 0.635731 CTTCTGAACGACATCGACGC 59.364 55.000 8.54 0.00 43.02 5.19
1687 1743 3.198068 TGCGTGAGGCTCTGAATAATTC 58.802 45.455 16.72 0.00 44.05 2.17
1688 1744 2.545946 GCGTGAGGCTCTGAATAATTCC 59.454 50.000 16.72 0.00 39.11 3.01
1689 1745 3.742640 GCGTGAGGCTCTGAATAATTCCT 60.743 47.826 16.72 0.00 39.11 3.36
1690 1746 3.806521 CGTGAGGCTCTGAATAATTCCTG 59.193 47.826 16.72 0.00 0.00 3.86
1691 1747 4.681781 CGTGAGGCTCTGAATAATTCCTGT 60.682 45.833 16.72 0.00 0.00 4.00
1692 1748 5.451937 CGTGAGGCTCTGAATAATTCCTGTA 60.452 44.000 16.72 0.00 0.00 2.74
1696 1752 5.597182 AGGCTCTGAATAATTCCTGTACGTA 59.403 40.000 0.00 0.00 0.00 3.57
1704 1760 8.024865 TGAATAATTCCTGTACGTACATATCCG 58.975 37.037 27.50 15.63 35.36 4.18
1798 1854 0.622136 ATCTTCACCAGGCATGCAGA 59.378 50.000 21.36 12.02 0.00 4.26
1806 1862 1.077644 AGGCATGCAGAAGCTCAGG 60.078 57.895 21.36 0.00 42.74 3.86
1815 1871 2.937799 GCAGAAGCTCAGGAAAGATCAG 59.062 50.000 0.00 0.00 37.91 2.90
2110 2177 8.523464 GTTTGTGAACGTTGATCAAATATATGC 58.477 33.333 10.35 0.00 32.16 3.14
2122 2189 5.603596 TCAAATATATGCGTAAGTTCCGGT 58.396 37.500 0.00 0.00 41.68 5.28
2168 2235 8.896320 TGTGTATTCGTTGGCTATACATTAAT 57.104 30.769 0.00 0.00 37.18 1.40
2169 2236 9.332502 TGTGTATTCGTTGGCTATACATTAATT 57.667 29.630 0.00 0.00 37.18 1.40
2181 2248 9.750125 GGCTATACATTAATTTTCTTTTGAGGG 57.250 33.333 0.00 0.00 0.00 4.30
2182 2249 9.750125 GCTATACATTAATTTTCTTTTGAGGGG 57.250 33.333 0.00 0.00 0.00 4.79
2202 2269 3.421844 GGTTGTAAGGGCATCTTCAACT 58.578 45.455 19.88 0.00 39.95 3.16
2227 2294 5.674569 GCAGCTCATAAATTTTCTCTCGCAA 60.675 40.000 0.00 0.00 0.00 4.85
2233 2302 2.457366 ATTTTCTCTCGCAACCGTCT 57.543 45.000 0.00 0.00 35.54 4.18
2245 2315 0.042131 AACCGTCTGTGGATAGGGGA 59.958 55.000 0.00 0.00 0.00 4.81
2318 2391 5.164061 GCATTTTGTCCGTTAGCAAATTCAG 60.164 40.000 0.00 0.00 34.99 3.02
2359 2464 4.147322 CAACGCGCCGGATCACAC 62.147 66.667 5.05 0.00 0.00 3.82
2400 2512 2.228822 CCGATCACAACCAAAAAGAGGG 59.771 50.000 0.00 0.00 0.00 4.30
2414 2526 7.122799 ACCAAAAAGAGGGAAATATGCTTAGTC 59.877 37.037 0.00 0.00 0.00 2.59
2430 2542 6.649155 TGCTTAGTCTTTACATGCCTGAATA 58.351 36.000 0.00 0.00 0.00 1.75
2436 2553 7.820648 AGTCTTTACATGCCTGAATACAAAAG 58.179 34.615 0.00 0.00 0.00 2.27
2439 2556 9.023962 TCTTTACATGCCTGAATACAAAAGAAT 57.976 29.630 0.00 0.00 30.01 2.40
2493 2610 1.605453 GACCGGCCATCCCAGTAAA 59.395 57.895 0.00 0.00 0.00 2.01
2540 2657 1.447643 CTACCGCATAGGCAGCCTT 59.552 57.895 22.26 2.08 46.52 4.35
2542 2659 1.334384 TACCGCATAGGCAGCCTTCA 61.334 55.000 22.26 1.78 46.52 3.02
2562 2724 2.184322 GCGTCCTCATCTTCCGCA 59.816 61.111 0.00 0.00 43.53 5.69
2566 2728 2.203126 CCTCATCTTCCGCAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
2588 2750 1.808945 CAACTCATCTTTCTGCCGCTT 59.191 47.619 0.00 0.00 0.00 4.68
2600 2762 0.537143 TGCCGCTTCAACATCTGGTT 60.537 50.000 0.00 0.00 41.47 3.67
2614 2776 1.911293 CTGGTTGTGGACGGATTGCG 61.911 60.000 0.00 0.00 0.00 4.85
2627 2789 2.987149 CGGATTGCGCGATAATTCTAGT 59.013 45.455 12.10 0.00 0.00 2.57
2641 2803 7.330946 CGATAATTCTAGTATCGGCATCCAAAA 59.669 37.037 11.51 0.00 44.17 2.44
2654 2816 5.514279 GGCATCCAAAAAGTCGATATTCAG 58.486 41.667 0.00 0.00 0.00 3.02
2678 2840 1.827399 AACATCTTGGCGTCCTCCGT 61.827 55.000 0.00 0.00 39.32 4.69
2709 2871 3.196685 CGATCTTCACCCTCTTTTCCTCT 59.803 47.826 0.00 0.00 0.00 3.69
2711 2873 5.069781 CGATCTTCACCCTCTTTTCCTCTAT 59.930 44.000 0.00 0.00 0.00 1.98
2714 2876 3.709587 TCACCCTCTTTTCCTCTATCGT 58.290 45.455 0.00 0.00 0.00 3.73
2726 2888 4.028131 TCCTCTATCGTGGCCTTTTTCTA 58.972 43.478 3.32 0.00 0.00 2.10
2748 2910 2.676822 AGCGTCGCCTTCCTCTCA 60.677 61.111 14.86 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.758979 CAGAAGCCTCCTGCAATGAATT 59.241 45.455 0.00 0.00 44.83 2.17
17 18 0.837691 TCTCCAGAAGCCTCCTGCAA 60.838 55.000 0.00 0.00 44.83 4.08
23 24 3.269178 CAGTCAATTCTCCAGAAGCCTC 58.731 50.000 0.00 0.00 37.48 4.70
44 45 2.028484 TGAGAACGTCCGCACACC 59.972 61.111 0.00 0.00 0.00 4.16
54 55 1.135257 AGATCTTCCGCTGTGAGAACG 60.135 52.381 0.00 0.00 0.00 3.95
59 60 1.135139 GTGCTAGATCTTCCGCTGTGA 59.865 52.381 0.00 0.00 0.00 3.58
62 63 2.593346 AAGTGCTAGATCTTCCGCTG 57.407 50.000 0.00 0.00 0.00 5.18
91 92 0.930310 CGCCGTTGTGTCATGGATAG 59.070 55.000 0.00 0.00 0.00 2.08
108 109 2.618241 TGATAAGTCAATTGCATCCCGC 59.382 45.455 0.00 0.00 42.89 6.13
112 113 9.181805 CAGAATGAATGATAAGTCAATTGCATC 57.818 33.333 0.00 1.92 39.69 3.91
132 133 6.707608 TCGATGACCTCCAAATTATCAGAATG 59.292 38.462 0.00 0.00 37.54 2.67
133 134 6.830912 TCGATGACCTCCAAATTATCAGAAT 58.169 36.000 0.00 0.00 0.00 2.40
134 135 6.233905 TCGATGACCTCCAAATTATCAGAA 57.766 37.500 0.00 0.00 0.00 3.02
135 136 5.869649 TCGATGACCTCCAAATTATCAGA 57.130 39.130 0.00 0.00 0.00 3.27
136 137 6.591834 GGTATCGATGACCTCCAAATTATCAG 59.408 42.308 8.54 0.00 33.86 2.90
137 138 6.042666 TGGTATCGATGACCTCCAAATTATCA 59.957 38.462 8.54 0.00 37.88 2.15
152 153 7.201470 CGTCCTTCATTATTCATGGTATCGATG 60.201 40.741 8.54 0.00 33.07 3.84
165 166 1.208535 TGCCGACCGTCCTTCATTATT 59.791 47.619 0.00 0.00 0.00 1.40
182 183 3.134127 GCCACCGTCATTCCTGCC 61.134 66.667 0.00 0.00 0.00 4.85
187 188 2.793278 AAAAACTGCCACCGTCATTC 57.207 45.000 0.00 0.00 0.00 2.67
278 279 5.886960 ATCTAGCAAACTCATGGACAAAC 57.113 39.130 0.00 0.00 0.00 2.93
279 280 6.003326 TCAATCTAGCAAACTCATGGACAAA 58.997 36.000 0.00 0.00 0.00 2.83
309 310 9.748708 CTCAAAACAATGAACAATAGAGGAAAA 57.251 29.630 0.00 0.00 0.00 2.29
310 311 8.359642 CCTCAAAACAATGAACAATAGAGGAAA 58.640 33.333 0.00 0.00 40.97 3.13
311 312 7.723616 TCCTCAAAACAATGAACAATAGAGGAA 59.276 33.333 0.00 0.00 43.38 3.36
312 313 7.230747 TCCTCAAAACAATGAACAATAGAGGA 58.769 34.615 0.00 0.00 43.92 3.71
313 314 7.452880 TCCTCAAAACAATGAACAATAGAGG 57.547 36.000 0.00 0.00 40.10 3.69
314 315 7.025963 GCTCCTCAAAACAATGAACAATAGAG 58.974 38.462 0.00 0.00 0.00 2.43
315 316 6.071952 GGCTCCTCAAAACAATGAACAATAGA 60.072 38.462 0.00 0.00 0.00 1.98
316 317 6.071728 AGGCTCCTCAAAACAATGAACAATAG 60.072 38.462 0.00 0.00 0.00 1.73
317 318 5.774690 AGGCTCCTCAAAACAATGAACAATA 59.225 36.000 0.00 0.00 0.00 1.90
318 319 4.590222 AGGCTCCTCAAAACAATGAACAAT 59.410 37.500 0.00 0.00 0.00 2.71
319 320 3.960102 AGGCTCCTCAAAACAATGAACAA 59.040 39.130 0.00 0.00 0.00 2.83
320 321 3.565307 AGGCTCCTCAAAACAATGAACA 58.435 40.909 0.00 0.00 0.00 3.18
324 325 5.964958 TTTAGAGGCTCCTCAAAACAATG 57.035 39.130 17.40 0.00 44.99 2.82
329 330 4.927267 TCCATTTAGAGGCTCCTCAAAA 57.073 40.909 17.40 7.56 44.99 2.44
349 350 9.903682 CATCAATTATGAGGAATGGTACAATTC 57.096 33.333 13.81 13.81 40.34 2.17
362 363 8.899427 AGACAACAGATACATCAATTATGAGG 57.101 34.615 0.00 0.00 42.90 3.86
364 365 9.889128 TTGAGACAACAGATACATCAATTATGA 57.111 29.630 0.00 0.00 39.07 2.15
368 369 9.234827 TCAATTGAGACAACAGATACATCAATT 57.765 29.630 3.38 4.82 43.16 2.32
369 370 8.797350 TCAATTGAGACAACAGATACATCAAT 57.203 30.769 3.38 0.00 37.47 2.57
370 371 8.620116 TTCAATTGAGACAACAGATACATCAA 57.380 30.769 8.41 0.00 0.00 2.57
379 380 8.562892 ACAGACTTTATTCAATTGAGACAACAG 58.437 33.333 8.41 4.43 0.00 3.16
454 456 7.042254 GCCGGAAGTAATACACCTTACATAAAG 60.042 40.741 5.05 0.00 34.66 1.85
455 457 6.762661 GCCGGAAGTAATACACCTTACATAAA 59.237 38.462 5.05 0.00 34.66 1.40
456 458 6.127111 TGCCGGAAGTAATACACCTTACATAA 60.127 38.462 5.05 0.00 34.66 1.90
457 459 5.363292 TGCCGGAAGTAATACACCTTACATA 59.637 40.000 5.05 0.00 34.66 2.29
458 460 4.162698 TGCCGGAAGTAATACACCTTACAT 59.837 41.667 5.05 0.00 34.66 2.29
459 461 3.514706 TGCCGGAAGTAATACACCTTACA 59.485 43.478 5.05 0.00 34.66 2.41
460 462 4.127566 TGCCGGAAGTAATACACCTTAC 57.872 45.455 5.05 0.00 32.80 2.34
461 463 4.443739 CCATGCCGGAAGTAATACACCTTA 60.444 45.833 5.05 0.00 36.56 2.69
462 464 3.541632 CATGCCGGAAGTAATACACCTT 58.458 45.455 5.05 0.00 0.00 3.50
463 465 2.158813 CCATGCCGGAAGTAATACACCT 60.159 50.000 5.05 0.00 36.56 4.00
464 466 2.218603 CCATGCCGGAAGTAATACACC 58.781 52.381 5.05 0.00 36.56 4.16
465 467 2.612212 CACCATGCCGGAAGTAATACAC 59.388 50.000 5.05 0.00 38.63 2.90
466 468 2.502130 TCACCATGCCGGAAGTAATACA 59.498 45.455 5.05 0.00 38.63 2.29
467 469 2.870411 GTCACCATGCCGGAAGTAATAC 59.130 50.000 5.05 0.00 38.63 1.89
468 470 2.158871 GGTCACCATGCCGGAAGTAATA 60.159 50.000 5.05 0.00 38.63 0.98
469 471 1.408266 GGTCACCATGCCGGAAGTAAT 60.408 52.381 5.05 0.00 38.63 1.89
470 472 0.035820 GGTCACCATGCCGGAAGTAA 60.036 55.000 5.05 0.00 38.63 2.24
471 473 1.195442 TGGTCACCATGCCGGAAGTA 61.195 55.000 5.05 0.00 38.63 2.24
472 474 2.063015 TTGGTCACCATGCCGGAAGT 62.063 55.000 5.05 0.00 38.63 3.01
473 475 1.303236 TTGGTCACCATGCCGGAAG 60.303 57.895 5.05 0.00 38.63 3.46
474 476 1.303236 CTTGGTCACCATGCCGGAA 60.303 57.895 5.05 0.00 38.63 4.30
475 477 1.561769 ATCTTGGTCACCATGCCGGA 61.562 55.000 5.05 0.00 38.63 5.14
476 478 0.180171 TATCTTGGTCACCATGCCGG 59.820 55.000 0.00 0.00 42.50 6.13
477 479 1.299541 GTATCTTGGTCACCATGCCG 58.700 55.000 0.00 0.00 31.53 5.69
478 480 2.418368 TGTATCTTGGTCACCATGCC 57.582 50.000 0.00 0.00 31.53 4.40
479 481 6.639632 AATTATGTATCTTGGTCACCATGC 57.360 37.500 0.00 0.00 31.53 4.06
482 484 9.772973 GTGTATAATTATGTATCTTGGTCACCA 57.227 33.333 8.28 0.00 0.00 4.17
483 485 9.772973 TGTGTATAATTATGTATCTTGGTCACC 57.227 33.333 8.28 0.00 0.00 4.02
503 505 9.920946 AGGTTAATTTCCTCATAACATGTGTAT 57.079 29.630 0.00 0.00 32.47 2.29
504 506 9.747898 AAGGTTAATTTCCTCATAACATGTGTA 57.252 29.630 0.00 0.00 33.76 2.90
505 507 8.522830 CAAGGTTAATTTCCTCATAACATGTGT 58.477 33.333 0.00 0.00 33.76 3.72
506 508 7.975616 CCAAGGTTAATTTCCTCATAACATGTG 59.024 37.037 0.00 0.00 33.76 3.21
507 509 7.363793 GCCAAGGTTAATTTCCTCATAACATGT 60.364 37.037 0.00 0.00 33.76 3.21
508 510 6.980397 GCCAAGGTTAATTTCCTCATAACATG 59.020 38.462 0.00 0.00 33.76 3.21
509 511 6.667414 TGCCAAGGTTAATTTCCTCATAACAT 59.333 34.615 2.98 0.00 33.76 2.71
510 512 6.013379 TGCCAAGGTTAATTTCCTCATAACA 58.987 36.000 2.98 0.00 33.76 2.41
511 513 6.524101 TGCCAAGGTTAATTTCCTCATAAC 57.476 37.500 2.98 0.00 33.76 1.89
512 514 7.546250 TTTGCCAAGGTTAATTTCCTCATAA 57.454 32.000 2.98 0.00 33.76 1.90
513 515 7.546250 TTTTGCCAAGGTTAATTTCCTCATA 57.454 32.000 2.98 0.00 33.76 2.15
514 516 6.432403 TTTTGCCAAGGTTAATTTCCTCAT 57.568 33.333 2.98 0.00 33.76 2.90
515 517 5.878406 TTTTGCCAAGGTTAATTTCCTCA 57.122 34.783 2.98 0.00 33.76 3.86
516 518 6.463360 TGATTTTGCCAAGGTTAATTTCCTC 58.537 36.000 2.98 0.00 33.76 3.71
517 519 6.432403 TGATTTTGCCAAGGTTAATTTCCT 57.568 33.333 0.00 0.00 36.81 3.36
518 520 7.390162 TCAATGATTTTGCCAAGGTTAATTTCC 59.610 33.333 0.00 0.00 0.00 3.13
519 521 8.321650 TCAATGATTTTGCCAAGGTTAATTTC 57.678 30.769 0.00 0.00 0.00 2.17
520 522 8.866970 ATCAATGATTTTGCCAAGGTTAATTT 57.133 26.923 0.00 0.00 0.00 1.82
521 523 8.732531 CAATCAATGATTTTGCCAAGGTTAATT 58.267 29.630 5.63 0.00 28.87 1.40
522 524 7.337436 CCAATCAATGATTTTGCCAAGGTTAAT 59.663 33.333 5.63 0.00 28.87 1.40
523 525 6.654161 CCAATCAATGATTTTGCCAAGGTTAA 59.346 34.615 5.63 0.00 28.87 2.01
524 526 6.171921 CCAATCAATGATTTTGCCAAGGTTA 58.828 36.000 5.63 0.00 28.87 2.85
525 527 5.005094 CCAATCAATGATTTTGCCAAGGTT 58.995 37.500 5.63 0.00 28.87 3.50
526 528 4.581868 CCAATCAATGATTTTGCCAAGGT 58.418 39.130 5.63 0.00 28.87 3.50
527 529 3.375922 GCCAATCAATGATTTTGCCAAGG 59.624 43.478 5.63 4.01 28.87 3.61
528 530 3.062909 CGCCAATCAATGATTTTGCCAAG 59.937 43.478 16.75 2.20 28.87 3.61
529 531 3.001414 CGCCAATCAATGATTTTGCCAA 58.999 40.909 16.75 0.00 28.87 4.52
530 532 2.619147 CGCCAATCAATGATTTTGCCA 58.381 42.857 16.75 0.00 28.87 4.92
531 533 1.935199 CCGCCAATCAATGATTTTGCC 59.065 47.619 16.75 3.09 28.87 4.52
532 534 1.328374 GCCGCCAATCAATGATTTTGC 59.672 47.619 5.63 10.82 28.87 3.68
533 535 2.619147 TGCCGCCAATCAATGATTTTG 58.381 42.857 5.63 2.07 28.87 2.44
534 536 3.002102 GTTGCCGCCAATCAATGATTTT 58.998 40.909 5.63 0.00 32.75 1.82
535 537 2.234414 AGTTGCCGCCAATCAATGATTT 59.766 40.909 5.63 0.00 32.75 2.17
536 538 1.826720 AGTTGCCGCCAATCAATGATT 59.173 42.857 2.07 2.07 32.75 2.57
537 539 1.477553 AGTTGCCGCCAATCAATGAT 58.522 45.000 0.00 0.00 32.75 2.45
538 540 2.121291 TAGTTGCCGCCAATCAATGA 57.879 45.000 0.00 0.00 32.75 2.57
539 541 2.937469 TTAGTTGCCGCCAATCAATG 57.063 45.000 0.00 0.00 32.75 2.82
540 542 3.446873 TGATTTAGTTGCCGCCAATCAAT 59.553 39.130 0.00 0.00 32.25 2.57
541 543 2.822561 TGATTTAGTTGCCGCCAATCAA 59.177 40.909 0.00 0.00 32.25 2.57
542 544 2.441410 TGATTTAGTTGCCGCCAATCA 58.559 42.857 0.00 0.00 32.64 2.57
543 545 3.715628 ATGATTTAGTTGCCGCCAATC 57.284 42.857 0.00 0.00 32.75 2.67
544 546 4.037923 CCTAATGATTTAGTTGCCGCCAAT 59.962 41.667 0.00 0.00 34.20 3.16
545 547 3.380004 CCTAATGATTTAGTTGCCGCCAA 59.620 43.478 0.00 0.00 34.20 4.52
546 548 2.948979 CCTAATGATTTAGTTGCCGCCA 59.051 45.455 0.00 0.00 34.20 5.69
547 549 2.287608 GCCTAATGATTTAGTTGCCGCC 60.288 50.000 0.00 0.00 34.20 6.13
548 550 2.357637 TGCCTAATGATTTAGTTGCCGC 59.642 45.455 0.00 0.00 34.20 6.53
549 551 4.498009 CCTTGCCTAATGATTTAGTTGCCG 60.498 45.833 0.00 0.00 34.20 5.69
550 552 4.644685 TCCTTGCCTAATGATTTAGTTGCC 59.355 41.667 0.00 0.00 34.20 4.52
551 553 5.835113 TCCTTGCCTAATGATTTAGTTGC 57.165 39.130 0.00 0.00 34.20 4.17
552 554 7.830739 ACTTTCCTTGCCTAATGATTTAGTTG 58.169 34.615 0.00 0.00 34.20 3.16
553 555 9.178758 CTACTTTCCTTGCCTAATGATTTAGTT 57.821 33.333 0.00 0.00 34.20 2.24
554 556 8.548877 TCTACTTTCCTTGCCTAATGATTTAGT 58.451 33.333 0.00 0.00 34.20 2.24
555 557 8.964476 TCTACTTTCCTTGCCTAATGATTTAG 57.036 34.615 0.00 0.00 35.55 1.85
556 558 9.396022 CTTCTACTTTCCTTGCCTAATGATTTA 57.604 33.333 0.00 0.00 0.00 1.40
557 559 8.109634 TCTTCTACTTTCCTTGCCTAATGATTT 58.890 33.333 0.00 0.00 0.00 2.17
558 560 7.633789 TCTTCTACTTTCCTTGCCTAATGATT 58.366 34.615 0.00 0.00 0.00 2.57
559 561 7.200434 TCTTCTACTTTCCTTGCCTAATGAT 57.800 36.000 0.00 0.00 0.00 2.45
560 562 6.620877 TCTTCTACTTTCCTTGCCTAATGA 57.379 37.500 0.00 0.00 0.00 2.57
561 563 8.964476 TTATCTTCTACTTTCCTTGCCTAATG 57.036 34.615 0.00 0.00 0.00 1.90
562 564 9.397280 GTTTATCTTCTACTTTCCTTGCCTAAT 57.603 33.333 0.00 0.00 0.00 1.73
563 565 8.380099 TGTTTATCTTCTACTTTCCTTGCCTAA 58.620 33.333 0.00 0.00 0.00 2.69
564 566 7.822822 GTGTTTATCTTCTACTTTCCTTGCCTA 59.177 37.037 0.00 0.00 0.00 3.93
565 567 6.655425 GTGTTTATCTTCTACTTTCCTTGCCT 59.345 38.462 0.00 0.00 0.00 4.75
566 568 6.430000 TGTGTTTATCTTCTACTTTCCTTGCC 59.570 38.462 0.00 0.00 0.00 4.52
567 569 7.435068 TGTGTTTATCTTCTACTTTCCTTGC 57.565 36.000 0.00 0.00 0.00 4.01
569 571 9.793259 TGATTGTGTTTATCTTCTACTTTCCTT 57.207 29.630 0.00 0.00 0.00 3.36
570 572 9.442047 CTGATTGTGTTTATCTTCTACTTTCCT 57.558 33.333 0.00 0.00 0.00 3.36
571 573 8.669243 CCTGATTGTGTTTATCTTCTACTTTCC 58.331 37.037 0.00 0.00 0.00 3.13
572 574 9.436957 TCCTGATTGTGTTTATCTTCTACTTTC 57.563 33.333 0.00 0.00 0.00 2.62
573 575 9.442047 CTCCTGATTGTGTTTATCTTCTACTTT 57.558 33.333 0.00 0.00 0.00 2.66
574 576 8.816894 TCTCCTGATTGTGTTTATCTTCTACTT 58.183 33.333 0.00 0.00 0.00 2.24
575 577 8.367660 TCTCCTGATTGTGTTTATCTTCTACT 57.632 34.615 0.00 0.00 0.00 2.57
578 580 9.206690 TCTATCTCCTGATTGTGTTTATCTTCT 57.793 33.333 0.00 0.00 34.32 2.85
579 581 9.995003 ATCTATCTCCTGATTGTGTTTATCTTC 57.005 33.333 0.00 0.00 34.32 2.87
585 587 8.207545 GGAAGTATCTATCTCCTGATTGTGTTT 58.792 37.037 0.00 0.00 34.32 2.83
586 588 7.345653 TGGAAGTATCTATCTCCTGATTGTGTT 59.654 37.037 0.00 0.00 34.32 3.32
587 589 6.841229 TGGAAGTATCTATCTCCTGATTGTGT 59.159 38.462 0.00 0.00 34.32 3.72
588 590 7.295322 TGGAAGTATCTATCTCCTGATTGTG 57.705 40.000 0.00 0.00 34.32 3.33
589 591 8.503428 AATGGAAGTATCTATCTCCTGATTGT 57.497 34.615 0.00 0.00 34.32 2.71
590 592 9.790344 AAAATGGAAGTATCTATCTCCTGATTG 57.210 33.333 0.00 0.00 34.32 2.67
615 617 9.467258 CATGCATCTCTTCTTGTAAAAAGAAAA 57.533 29.630 0.00 0.00 36.01 2.29
616 618 7.596248 GCATGCATCTCTTCTTGTAAAAAGAAA 59.404 33.333 14.21 0.00 36.01 2.52
617 619 7.086376 GCATGCATCTCTTCTTGTAAAAAGAA 58.914 34.615 14.21 0.99 35.25 2.52
618 620 6.207221 TGCATGCATCTCTTCTTGTAAAAAGA 59.793 34.615 18.46 0.00 0.00 2.52
619 621 6.384224 TGCATGCATCTCTTCTTGTAAAAAG 58.616 36.000 18.46 0.00 0.00 2.27
620 622 6.330004 TGCATGCATCTCTTCTTGTAAAAA 57.670 33.333 18.46 0.00 0.00 1.94
621 623 5.963176 TGCATGCATCTCTTCTTGTAAAA 57.037 34.783 18.46 0.00 0.00 1.52
622 624 5.963176 TTGCATGCATCTCTTCTTGTAAA 57.037 34.783 23.37 0.00 0.00 2.01
623 625 5.220719 CGATTGCATGCATCTCTTCTTGTAA 60.221 40.000 23.37 1.12 0.00 2.41
624 626 4.271776 CGATTGCATGCATCTCTTCTTGTA 59.728 41.667 23.37 1.36 0.00 2.41
625 627 3.064958 CGATTGCATGCATCTCTTCTTGT 59.935 43.478 23.37 0.00 0.00 3.16
626 628 3.548214 CCGATTGCATGCATCTCTTCTTG 60.548 47.826 23.37 8.15 0.00 3.02
627 629 2.617308 CCGATTGCATGCATCTCTTCTT 59.383 45.455 23.37 0.00 0.00 2.52
628 630 2.219458 CCGATTGCATGCATCTCTTCT 58.781 47.619 23.37 0.24 0.00 2.85
629 631 1.266175 CCCGATTGCATGCATCTCTTC 59.734 52.381 23.37 12.25 0.00 2.87
630 632 1.315690 CCCGATTGCATGCATCTCTT 58.684 50.000 23.37 4.23 0.00 2.85
631 633 0.536687 CCCCGATTGCATGCATCTCT 60.537 55.000 23.37 6.75 0.00 3.10
632 634 1.521450 CCCCCGATTGCATGCATCTC 61.521 60.000 23.37 19.36 0.00 2.75
633 635 1.529948 CCCCCGATTGCATGCATCT 60.530 57.895 23.37 12.36 0.00 2.90
634 636 1.521450 CTCCCCCGATTGCATGCATC 61.521 60.000 23.37 18.65 0.00 3.91
635 637 1.529948 CTCCCCCGATTGCATGCAT 60.530 57.895 23.37 11.80 0.00 3.96
636 638 2.124193 CTCCCCCGATTGCATGCA 60.124 61.111 18.46 18.46 0.00 3.96
637 639 1.895707 CTCTCCCCCGATTGCATGC 60.896 63.158 11.82 11.82 0.00 4.06
638 640 0.399454 ATCTCTCCCCCGATTGCATG 59.601 55.000 0.00 0.00 0.00 4.06
639 641 1.625818 GTATCTCTCCCCCGATTGCAT 59.374 52.381 0.00 0.00 0.00 3.96
640 642 1.048601 GTATCTCTCCCCCGATTGCA 58.951 55.000 0.00 0.00 0.00 4.08
641 643 1.273886 GAGTATCTCTCCCCCGATTGC 59.726 57.143 0.00 0.00 37.22 3.56
668 670 9.693739 TCATAACTCCATCATTAGCCTTTAAAA 57.306 29.630 0.00 0.00 0.00 1.52
669 671 9.342308 CTCATAACTCCATCATTAGCCTTTAAA 57.658 33.333 0.00 0.00 0.00 1.52
670 672 7.939039 CCTCATAACTCCATCATTAGCCTTTAA 59.061 37.037 0.00 0.00 0.00 1.52
671 673 7.292356 TCCTCATAACTCCATCATTAGCCTTTA 59.708 37.037 0.00 0.00 0.00 1.85
672 674 6.101734 TCCTCATAACTCCATCATTAGCCTTT 59.898 38.462 0.00 0.00 0.00 3.11
673 675 5.608437 TCCTCATAACTCCATCATTAGCCTT 59.392 40.000 0.00 0.00 0.00 4.35
674 676 5.158141 TCCTCATAACTCCATCATTAGCCT 58.842 41.667 0.00 0.00 0.00 4.58
675 677 5.489792 TCCTCATAACTCCATCATTAGCC 57.510 43.478 0.00 0.00 0.00 3.93
676 678 7.992754 AATTCCTCATAACTCCATCATTAGC 57.007 36.000 0.00 0.00 0.00 3.09
679 681 9.790344 CTTCTAATTCCTCATAACTCCATCATT 57.210 33.333 0.00 0.00 0.00 2.57
680 682 9.163894 TCTTCTAATTCCTCATAACTCCATCAT 57.836 33.333 0.00 0.00 0.00 2.45
681 683 8.553085 TCTTCTAATTCCTCATAACTCCATCA 57.447 34.615 0.00 0.00 0.00 3.07
682 684 9.838339 TTTCTTCTAATTCCTCATAACTCCATC 57.162 33.333 0.00 0.00 0.00 3.51
684 686 9.618890 CATTTCTTCTAATTCCTCATAACTCCA 57.381 33.333 0.00 0.00 0.00 3.86
685 687 9.620259 ACATTTCTTCTAATTCCTCATAACTCC 57.380 33.333 0.00 0.00 0.00 3.85
744 746 8.759782 CCCTCCGTTCCTTTATATAAGATGTAT 58.240 37.037 0.00 0.00 0.00 2.29
745 747 7.951806 TCCCTCCGTTCCTTTATATAAGATGTA 59.048 37.037 0.00 0.00 0.00 2.29
746 748 6.785963 TCCCTCCGTTCCTTTATATAAGATGT 59.214 38.462 0.00 0.00 0.00 3.06
747 749 7.038941 ACTCCCTCCGTTCCTTTATATAAGATG 60.039 40.741 0.00 0.00 0.00 2.90
748 750 7.017531 ACTCCCTCCGTTCCTTTATATAAGAT 58.982 38.462 0.00 0.00 0.00 2.40
749 751 6.379579 ACTCCCTCCGTTCCTTTATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
750 752 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
751 753 8.551682 TTTACTCCCTCCGTTCCTTTATATAA 57.448 34.615 0.00 0.00 0.00 0.98
752 754 8.731591 ATTTACTCCCTCCGTTCCTTTATATA 57.268 34.615 0.00 0.00 0.00 0.86
753 755 7.525029 CGATTTACTCCCTCCGTTCCTTTATAT 60.525 40.741 0.00 0.00 0.00 0.86
754 756 6.239120 CGATTTACTCCCTCCGTTCCTTTATA 60.239 42.308 0.00 0.00 0.00 0.98
755 757 5.452917 CGATTTACTCCCTCCGTTCCTTTAT 60.453 44.000 0.00 0.00 0.00 1.40
756 758 4.142093 CGATTTACTCCCTCCGTTCCTTTA 60.142 45.833 0.00 0.00 0.00 1.85
757 759 3.369157 CGATTTACTCCCTCCGTTCCTTT 60.369 47.826 0.00 0.00 0.00 3.11
758 760 2.167900 CGATTTACTCCCTCCGTTCCTT 59.832 50.000 0.00 0.00 0.00 3.36
759 761 1.755380 CGATTTACTCCCTCCGTTCCT 59.245 52.381 0.00 0.00 0.00 3.36
760 762 1.805495 GCGATTTACTCCCTCCGTTCC 60.805 57.143 0.00 0.00 0.00 3.62
761 763 1.134907 TGCGATTTACTCCCTCCGTTC 60.135 52.381 0.00 0.00 0.00 3.95
762 764 0.899720 TGCGATTTACTCCCTCCGTT 59.100 50.000 0.00 0.00 0.00 4.44
763 765 0.899720 TTGCGATTTACTCCCTCCGT 59.100 50.000 0.00 0.00 0.00 4.69
764 766 2.240493 ATTGCGATTTACTCCCTCCG 57.760 50.000 0.00 0.00 0.00 4.63
765 767 5.123936 ACTAAATTGCGATTTACTCCCTCC 58.876 41.667 14.08 0.00 36.82 4.30
766 768 7.964604 ATACTAAATTGCGATTTACTCCCTC 57.035 36.000 14.08 0.00 36.82 4.30
767 769 8.747538 AAATACTAAATTGCGATTTACTCCCT 57.252 30.769 14.08 0.00 36.82 4.20
768 770 9.797556 AAAAATACTAAATTGCGATTTACTCCC 57.202 29.630 14.08 0.00 36.82 4.30
819 821 8.666573 CATTTTTCATTTGCTATATTGGTTGCA 58.333 29.630 0.00 0.00 0.00 4.08
844 846 0.382158 CTTCTACGCTCTCCATCGCA 59.618 55.000 0.00 0.00 0.00 5.10
930 934 1.227205 GATGCCGGTCTGAGCTCAG 60.227 63.158 33.73 33.73 45.08 3.35
931 935 1.332889 ATGATGCCGGTCTGAGCTCA 61.333 55.000 17.19 17.19 0.00 4.26
932 936 0.879400 CATGATGCCGGTCTGAGCTC 60.879 60.000 6.82 6.82 0.00 4.09
1386 1390 7.990886 TCGATGGATAACTTGCTTAATTACCTT 59.009 33.333 0.00 0.00 0.00 3.50
1397 1401 4.831741 GATCGATCGATGGATAACTTGC 57.168 45.455 33.86 12.31 34.60 4.01
1584 1613 0.237235 GCGAAACGGTTCTGCATCAA 59.763 50.000 20.06 0.00 35.06 2.57
1602 1658 4.787882 GCCGCTAGAAGAGAATTTCATTGC 60.788 45.833 0.00 0.00 0.00 3.56
1603 1659 4.574013 AGCCGCTAGAAGAGAATTTCATTG 59.426 41.667 0.00 0.00 0.00 2.82
1606 1662 3.895232 AGCCGCTAGAAGAGAATTTCA 57.105 42.857 0.00 0.00 0.00 2.69
1609 1665 3.449018 TCAGAAGCCGCTAGAAGAGAATT 59.551 43.478 0.00 0.00 0.00 2.17
1612 1668 2.130272 TCAGAAGCCGCTAGAAGAGA 57.870 50.000 0.00 0.00 0.00 3.10
1613 1669 2.535331 GTTCAGAAGCCGCTAGAAGAG 58.465 52.381 0.00 0.00 0.00 2.85
1614 1670 1.135373 CGTTCAGAAGCCGCTAGAAGA 60.135 52.381 0.00 0.00 0.00 2.87
1615 1671 1.135373 TCGTTCAGAAGCCGCTAGAAG 60.135 52.381 0.00 0.00 0.00 2.85
1616 1672 0.885879 TCGTTCAGAAGCCGCTAGAA 59.114 50.000 0.00 0.00 0.00 2.10
1617 1673 0.170561 GTCGTTCAGAAGCCGCTAGA 59.829 55.000 0.00 0.00 0.00 2.43
1618 1674 0.109272 TGTCGTTCAGAAGCCGCTAG 60.109 55.000 0.00 0.00 0.00 3.42
1619 1675 0.530744 ATGTCGTTCAGAAGCCGCTA 59.469 50.000 0.00 0.00 0.00 4.26
1620 1676 0.737715 GATGTCGTTCAGAAGCCGCT 60.738 55.000 0.00 0.00 0.00 5.52
1621 1677 1.710339 GATGTCGTTCAGAAGCCGC 59.290 57.895 0.00 0.00 0.00 6.53
1622 1678 0.456142 TCGATGTCGTTCAGAAGCCG 60.456 55.000 2.04 0.00 40.80 5.52
1623 1679 0.992802 GTCGATGTCGTTCAGAAGCC 59.007 55.000 2.04 0.00 40.80 4.35
1624 1680 0.635731 CGTCGATGTCGTTCAGAAGC 59.364 55.000 2.04 0.00 40.80 3.86
1625 1681 0.635731 GCGTCGATGTCGTTCAGAAG 59.364 55.000 6.48 0.00 40.80 2.85
1626 1682 0.039888 TGCGTCGATGTCGTTCAGAA 60.040 50.000 6.48 0.00 40.80 3.02
1627 1683 0.728129 GTGCGTCGATGTCGTTCAGA 60.728 55.000 6.48 0.00 40.80 3.27
1628 1684 0.729478 AGTGCGTCGATGTCGTTCAG 60.729 55.000 6.48 0.00 40.80 3.02
1629 1685 1.001745 CAGTGCGTCGATGTCGTTCA 61.002 55.000 6.48 0.00 40.80 3.18
1630 1686 1.002250 ACAGTGCGTCGATGTCGTTC 61.002 55.000 6.48 0.00 40.80 3.95
1631 1687 0.596600 AACAGTGCGTCGATGTCGTT 60.597 50.000 6.48 2.35 40.80 3.85
1632 1688 1.002250 GAACAGTGCGTCGATGTCGT 61.002 55.000 6.48 0.00 40.80 4.34
1633 1689 1.001745 TGAACAGTGCGTCGATGTCG 61.002 55.000 6.48 0.00 41.45 4.35
1634 1690 1.350193 ATGAACAGTGCGTCGATGTC 58.650 50.000 6.48 0.00 0.00 3.06
1635 1691 2.647529 TATGAACAGTGCGTCGATGT 57.352 45.000 6.48 0.00 0.00 3.06
1636 1692 2.860136 ACATATGAACAGTGCGTCGATG 59.140 45.455 10.38 0.00 0.00 3.84
1637 1693 3.165058 ACATATGAACAGTGCGTCGAT 57.835 42.857 10.38 0.00 0.00 3.59
1638 1694 2.647529 ACATATGAACAGTGCGTCGA 57.352 45.000 10.38 0.00 0.00 4.20
1639 1695 3.722555 AAACATATGAACAGTGCGTCG 57.277 42.857 10.38 0.00 0.00 5.12
1640 1696 7.962918 AGAAAATAAACATATGAACAGTGCGTC 59.037 33.333 10.38 0.00 0.00 5.19
1641 1697 7.750458 CAGAAAATAAACATATGAACAGTGCGT 59.250 33.333 10.38 0.00 0.00 5.24
1642 1698 7.253420 GCAGAAAATAAACATATGAACAGTGCG 60.253 37.037 10.38 0.00 0.00 5.34
1643 1699 7.253420 CGCAGAAAATAAACATATGAACAGTGC 60.253 37.037 10.38 5.57 0.00 4.40
1644 1700 7.750458 ACGCAGAAAATAAACATATGAACAGTG 59.250 33.333 10.38 0.00 0.00 3.66
1687 1743 2.921069 GCTGCGGATATGTACGTACAGG 60.921 54.545 30.15 18.04 39.92 4.00
1688 1744 2.316792 GCTGCGGATATGTACGTACAG 58.683 52.381 30.15 18.57 39.92 2.74
1689 1745 1.001048 GGCTGCGGATATGTACGTACA 60.001 52.381 29.15 29.15 40.98 2.90
1690 1746 1.268899 AGGCTGCGGATATGTACGTAC 59.731 52.381 18.90 18.90 32.98 3.67
1691 1747 1.268625 CAGGCTGCGGATATGTACGTA 59.731 52.381 0.00 0.00 32.98 3.57
1692 1748 0.032130 CAGGCTGCGGATATGTACGT 59.968 55.000 0.00 0.00 32.98 3.57
1696 1752 1.146930 CACCAGGCTGCGGATATGT 59.853 57.895 9.56 0.00 0.00 2.29
1704 1760 4.341783 AGCACTCCACCAGGCTGC 62.342 66.667 9.56 0.00 38.13 5.25
1798 1854 2.909006 TGTCCTGATCTTTCCTGAGCTT 59.091 45.455 0.00 0.00 0.00 3.74
1806 1862 4.195416 GGAGTTGGATGTCCTGATCTTTC 58.805 47.826 0.09 0.00 36.82 2.62
1815 1871 2.355818 GGTAAGGTGGAGTTGGATGTCC 60.356 54.545 0.00 0.00 0.00 4.02
1849 1905 7.940688 TGATTCATAGCCAATTGATCATGTACT 59.059 33.333 7.12 0.00 0.00 2.73
1957 2013 7.458397 TCACTTGATTTACCTAAACCTGTGAT 58.542 34.615 0.00 0.00 0.00 3.06
2168 2235 4.651962 CCCTTACAACCCCTCAAAAGAAAA 59.348 41.667 0.00 0.00 0.00 2.29
2169 2236 4.219919 CCCTTACAACCCCTCAAAAGAAA 58.780 43.478 0.00 0.00 0.00 2.52
2170 2237 3.839778 CCCTTACAACCCCTCAAAAGAA 58.160 45.455 0.00 0.00 0.00 2.52
2171 2238 2.490168 GCCCTTACAACCCCTCAAAAGA 60.490 50.000 0.00 0.00 0.00 2.52
2172 2239 1.893137 GCCCTTACAACCCCTCAAAAG 59.107 52.381 0.00 0.00 0.00 2.27
2173 2240 1.218196 TGCCCTTACAACCCCTCAAAA 59.782 47.619 0.00 0.00 0.00 2.44
2174 2241 0.854218 TGCCCTTACAACCCCTCAAA 59.146 50.000 0.00 0.00 0.00 2.69
2175 2242 1.005450 GATGCCCTTACAACCCCTCAA 59.995 52.381 0.00 0.00 0.00 3.02
2176 2243 0.623723 GATGCCCTTACAACCCCTCA 59.376 55.000 0.00 0.00 0.00 3.86
2177 2244 0.919710 AGATGCCCTTACAACCCCTC 59.080 55.000 0.00 0.00 0.00 4.30
2178 2245 1.285078 GAAGATGCCCTTACAACCCCT 59.715 52.381 0.00 0.00 34.68 4.79
2179 2246 1.005450 TGAAGATGCCCTTACAACCCC 59.995 52.381 0.00 0.00 34.68 4.95
2180 2247 2.492088 GTTGAAGATGCCCTTACAACCC 59.508 50.000 0.00 0.00 37.17 4.11
2181 2248 3.191371 CAGTTGAAGATGCCCTTACAACC 59.809 47.826 17.21 8.36 40.14 3.77
2182 2249 3.366374 GCAGTTGAAGATGCCCTTACAAC 60.366 47.826 0.00 0.00 39.90 3.32
2183 2250 2.819608 GCAGTTGAAGATGCCCTTACAA 59.180 45.455 0.00 0.00 36.41 2.41
2184 2251 2.224744 TGCAGTTGAAGATGCCCTTACA 60.225 45.455 0.48 0.00 41.85 2.41
2202 2269 4.201851 GCGAGAGAAAATTTATGAGCTGCA 60.202 41.667 1.02 0.00 0.00 4.41
2227 2294 0.397254 CTCCCCTATCCACAGACGGT 60.397 60.000 0.00 0.00 0.00 4.83
2233 2302 0.716591 ACTGGTCTCCCCTATCCACA 59.283 55.000 0.00 0.00 0.00 4.17
2245 2315 2.680352 ATGTCCGCGGACTGGTCT 60.680 61.111 46.72 28.29 44.80 3.85
2318 2391 4.811024 TGTGGATCAGCGTAGATTTGAATC 59.189 41.667 0.00 0.00 35.64 2.52
2363 2468 4.033894 GGAGAATGCGATCCCACG 57.966 61.111 0.00 0.00 0.00 4.94
2400 2512 8.072567 CAGGCATGTAAAGACTAAGCATATTTC 58.927 37.037 0.00 0.00 0.00 2.17
2430 2542 5.497474 ACTGCCGGACTAATATTCTTTTGT 58.503 37.500 5.05 0.00 0.00 2.83
2436 2553 3.746045 TGGACTGCCGGACTAATATTC 57.254 47.619 5.05 0.00 36.79 1.75
2439 2556 1.070134 GCATGGACTGCCGGACTAATA 59.930 52.381 5.05 0.00 45.66 0.98
2442 2559 2.900273 GCATGGACTGCCGGACTA 59.100 61.111 5.05 0.00 45.66 2.59
2490 2607 1.271163 CCTTGGTCGGGAAGCAGTTTA 60.271 52.381 0.00 0.00 36.57 2.01
2493 2610 1.831652 CTCCTTGGTCGGGAAGCAGT 61.832 60.000 0.00 0.00 36.57 4.40
2523 2640 1.334384 TGAAGGCTGCCTATGCGGTA 61.334 55.000 23.69 0.55 46.11 4.02
2540 2657 0.385751 GGAAGATGAGGACGCGATGA 59.614 55.000 15.93 0.00 0.00 2.92
2542 2659 1.360551 CGGAAGATGAGGACGCGAT 59.639 57.895 15.93 0.00 0.00 4.58
2562 2724 1.005215 CAGAAAGATGAGTTGGGGGCT 59.995 52.381 0.00 0.00 0.00 5.19
2566 2728 1.089920 CGGCAGAAAGATGAGTTGGG 58.910 55.000 0.00 0.00 0.00 4.12
2600 2762 2.286127 TATCGCGCAATCCGTCCACA 62.286 55.000 8.75 0.00 39.71 4.17
2614 2776 4.740695 GGATGCCGATACTAGAATTATCGC 59.259 45.833 13.18 10.23 44.57 4.58
2627 2789 3.254470 TCGACTTTTTGGATGCCGATA 57.746 42.857 0.00 0.00 0.00 2.92
2641 2803 4.819105 TGTTGACCCTGAATATCGACTT 57.181 40.909 0.00 0.00 0.00 3.01
2654 2816 1.305930 GGACGCCAAGATGTTGACCC 61.306 60.000 3.74 0.00 35.46 4.46
2678 2840 0.531974 GGTGAAGATCGCCGCCAATA 60.532 55.000 12.97 0.00 37.29 1.90
2709 2871 3.444742 TCGAGTAGAAAAAGGCCACGATA 59.555 43.478 5.01 0.00 0.00 2.92
2711 2873 1.614903 TCGAGTAGAAAAAGGCCACGA 59.385 47.619 5.01 0.00 0.00 4.35
2714 2876 1.671850 CGCTCGAGTAGAAAAAGGCCA 60.672 52.381 15.13 0.00 0.00 5.36
2726 2888 4.117661 GGAAGGCGACGCTCGAGT 62.118 66.667 20.77 0.00 43.74 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.