Multiple sequence alignment - TraesCS6D01G095600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G095600 chr6D 100.000 9656 0 0 1 9656 60059697 60069352 0.000000e+00 17832.0
1 TraesCS6D01G095600 chr6D 93.233 266 18 0 9391 9656 121361868 121362133 9.090000e-105 392.0
2 TraesCS6D01G095600 chr6D 95.102 245 12 0 9391 9635 60068843 60069087 4.230000e-103 387.0
3 TraesCS6D01G095600 chr6D 80.427 281 35 7 3639 3901 269740036 269740314 7.650000e-46 196.0
4 TraesCS6D01G095600 chr6D 94.444 36 1 1 8802 8837 121361568 121361602 5.000000e-03 54.7
5 TraesCS6D01G095600 chr6B 94.632 3651 121 25 3651 7272 133693482 133697086 0.000000e+00 5587.0
6 TraesCS6D01G095600 chr6B 95.089 2871 85 22 891 3728 133690631 133693478 0.000000e+00 4470.0
7 TraesCS6D01G095600 chr6B 95.335 1372 46 7 7279 8646 133697184 133698541 0.000000e+00 2163.0
8 TraesCS6D01G095600 chr6B 80.073 818 137 21 1 813 133689593 133690389 1.400000e-162 584.0
9 TraesCS6D01G095600 chr6B 84.496 258 32 5 3649 3901 422352691 422352945 2.080000e-61 248.0
10 TraesCS6D01G095600 chr6B 94.366 71 4 0 8699 8769 133698652 133698722 1.030000e-19 110.0
11 TraesCS6D01G095600 chr6A 95.660 3433 114 20 5231 8646 76520937 76524351 0.000000e+00 5481.0
12 TraesCS6D01G095600 chr6A 95.590 1338 45 9 2399 3732 76514516 76515843 0.000000e+00 2132.0
13 TraesCS6D01G095600 chr6A 94.662 1274 40 8 3976 5227 76519413 76520680 0.000000e+00 1951.0
14 TraesCS6D01G095600 chr6A 93.543 1115 38 8 1296 2400 76513201 76514291 0.000000e+00 1629.0
15 TraesCS6D01G095600 chr6A 89.941 845 75 7 1 842 76511917 76512754 0.000000e+00 1081.0
16 TraesCS6D01G095600 chr6A 93.529 340 15 4 3652 3985 76515843 76516181 5.210000e-137 499.0
17 TraesCS6D01G095600 chr6A 92.401 329 5 7 895 1209 76512754 76513076 1.480000e-122 451.0
18 TraesCS6D01G095600 chr6A 91.045 134 11 1 8639 8772 76524423 76524555 7.700000e-41 180.0
19 TraesCS6D01G095600 chr4B 89.655 522 45 8 8870 9386 648548621 648548104 0.000000e+00 656.0
20 TraesCS6D01G095600 chr4B 92.135 267 20 1 9391 9656 648548344 648548078 9.160000e-100 375.0
21 TraesCS6D01G095600 chr4B 83.922 255 20 11 3650 3901 384301471 384301235 3.510000e-54 224.0
22 TraesCS6D01G095600 chr4B 83.468 248 26 6 3650 3895 384301222 384300988 5.870000e-52 217.0
23 TraesCS6D01G095600 chr4B 95.000 40 0 2 8799 8837 648548660 648548622 2.910000e-05 62.1
24 TraesCS6D01G095600 chr1D 89.210 519 52 4 8870 9386 180130844 180130328 0.000000e+00 645.0
25 TraesCS6D01G095600 chr1D 93.233 266 18 0 9391 9656 180130567 180130302 9.090000e-105 392.0
26 TraesCS6D01G095600 chr1D 92.105 266 20 1 9391 9656 339304690 339304426 3.290000e-99 374.0
27 TraesCS6D01G095600 chr1D 84.173 278 43 1 1 278 182638787 182638511 1.600000e-67 268.0
28 TraesCS6D01G095600 chr1D 84.298 121 11 5 4921 5037 37437319 37437203 2.850000e-20 111.0
29 TraesCS6D01G095600 chr1A 89.038 520 48 9 8870 9386 40143262 40143775 3.800000e-178 636.0
30 TraesCS6D01G095600 chr1A 88.247 519 52 9 8870 9386 592125176 592125687 6.410000e-171 612.0
31 TraesCS6D01G095600 chr2A 88.803 518 52 6 8870 9386 705545654 705545142 1.770000e-176 630.0
32 TraesCS6D01G095600 chr2A 78.508 563 104 12 8 567 641604119 641603571 4.290000e-93 353.0
33 TraesCS6D01G095600 chr1B 88.046 527 48 10 8870 9386 605663130 605662609 2.310000e-170 610.0
34 TraesCS6D01G095600 chr1B 84.950 299 27 8 3604 3900 563125044 563124762 4.410000e-73 287.0
35 TraesCS6D01G095600 chr1B 96.970 33 0 1 8805 8837 605663162 605663131 5.000000e-03 54.7
36 TraesCS6D01G095600 chr1B 100.000 28 0 0 3604 3631 681734165 681734192 1.800000e-02 52.8
37 TraesCS6D01G095600 chr7A 88.077 520 52 10 8870 9386 105247150 105246638 8.290000e-170 608.0
38 TraesCS6D01G095600 chr3D 87.020 547 55 11 8844 9386 16547064 16547598 3.860000e-168 603.0
39 TraesCS6D01G095600 chr3D 91.729 266 20 1 9391 9656 16547361 16547624 1.530000e-97 368.0
40 TraesCS6D01G095600 chr3D 86.076 158 16 3 3750 3901 390175297 390175140 2.160000e-36 165.0
41 TraesCS6D01G095600 chr3B 87.689 528 50 9 8870 9386 813771628 813771105 1.390000e-167 601.0
42 TraesCS6D01G095600 chr3B 81.019 216 29 7 3689 3896 141965678 141965467 2.790000e-35 161.0
43 TraesCS6D01G095600 chr3B 89.362 47 3 1 3601 3645 691264393 691264347 3.770000e-04 58.4
44 TraesCS6D01G095600 chr3B 96.970 33 0 1 8805 8837 813771660 813771629 5.000000e-03 54.7
45 TraesCS6D01G095600 chr2B 85.338 607 59 16 2871 3450 532484261 532483658 1.390000e-167 601.0
46 TraesCS6D01G095600 chr2B 96.970 33 0 1 8805 8837 775121305 775121336 5.000000e-03 54.7
47 TraesCS6D01G095600 chr5B 79.496 556 96 8 1 550 497008553 497008010 7.080000e-101 379.0
48 TraesCS6D01G095600 chr5D 91.729 266 21 1 9391 9656 3995118 3994854 1.530000e-97 368.0
49 TraesCS6D01G095600 chr5D 91.353 266 22 1 9391 9656 3995926 3996190 7.130000e-96 363.0
50 TraesCS6D01G095600 chr3A 90.977 266 21 3 9391 9656 7967957 7968219 1.190000e-93 355.0
51 TraesCS6D01G095600 chr3A 80.170 353 62 7 7 358 495248334 495247989 3.460000e-64 257.0
52 TraesCS6D01G095600 chr7D 83.828 303 40 7 2705 3002 581032054 581031756 7.380000e-71 279.0
53 TraesCS6D01G095600 chr7D 76.190 525 116 8 28 549 382289373 382289891 1.600000e-67 268.0
54 TraesCS6D01G095600 chr7D 81.191 319 41 12 2785 3085 591254698 591254381 1.250000e-58 239.0
55 TraesCS6D01G095600 chr7D 83.158 95 12 2 4966 5056 190083111 190083017 6.210000e-12 84.2
56 TraesCS6D01G095600 chr7B 83.498 303 42 6 2705 3002 648708421 648708122 9.550000e-70 276.0
57 TraesCS6D01G095600 chr2D 82.353 306 43 7 8 311 496446916 496446620 1.240000e-63 255.0
58 TraesCS6D01G095600 chr2D 77.188 377 73 11 9 380 332495348 332495716 3.530000e-49 207.0
59 TraesCS6D01G095600 chr4A 81.496 254 30 6 3650 3901 168781056 168781294 9.900000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G095600 chr6D 60059697 60069352 9655 False 9109.500000 17832 97.551000 1 9656 2 chr6D.!!$F2 9655
1 TraesCS6D01G095600 chr6D 121361568 121362133 565 False 223.350000 392 93.838500 8802 9656 2 chr6D.!!$F3 854
2 TraesCS6D01G095600 chr6B 133689593 133698722 9129 False 2582.800000 5587 91.899000 1 8769 5 chr6B.!!$F2 8768
3 TraesCS6D01G095600 chr6A 76511917 76524555 12638 False 1675.500000 5481 93.296375 1 8772 8 chr6A.!!$F1 8771
4 TraesCS6D01G095600 chr4B 648548078 648548660 582 True 364.366667 656 92.263333 8799 9656 3 chr4B.!!$R2 857
5 TraesCS6D01G095600 chr1D 180130302 180130844 542 True 518.500000 645 91.221500 8870 9656 2 chr1D.!!$R4 786
6 TraesCS6D01G095600 chr1A 40143262 40143775 513 False 636.000000 636 89.038000 8870 9386 1 chr1A.!!$F1 516
7 TraesCS6D01G095600 chr1A 592125176 592125687 511 False 612.000000 612 88.247000 8870 9386 1 chr1A.!!$F2 516
8 TraesCS6D01G095600 chr2A 705545142 705545654 512 True 630.000000 630 88.803000 8870 9386 1 chr2A.!!$R2 516
9 TraesCS6D01G095600 chr2A 641603571 641604119 548 True 353.000000 353 78.508000 8 567 1 chr2A.!!$R1 559
10 TraesCS6D01G095600 chr1B 605662609 605663162 553 True 332.350000 610 92.508000 8805 9386 2 chr1B.!!$R2 581
11 TraesCS6D01G095600 chr7A 105246638 105247150 512 True 608.000000 608 88.077000 8870 9386 1 chr7A.!!$R1 516
12 TraesCS6D01G095600 chr3D 16547064 16547624 560 False 485.500000 603 89.374500 8844 9656 2 chr3D.!!$F1 812
13 TraesCS6D01G095600 chr3B 813771105 813771660 555 True 327.850000 601 92.329500 8805 9386 2 chr3B.!!$R3 581
14 TraesCS6D01G095600 chr2B 532483658 532484261 603 True 601.000000 601 85.338000 2871 3450 1 chr2B.!!$R1 579
15 TraesCS6D01G095600 chr5B 497008010 497008553 543 True 379.000000 379 79.496000 1 550 1 chr5B.!!$R1 549
16 TraesCS6D01G095600 chr7D 382289373 382289891 518 False 268.000000 268 76.190000 28 549 1 chr7D.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 777 0.709467 TCGCGACGGACAAAAATACG 59.291 50.000 3.71 0.0 0.00 3.06 F
2131 2407 0.108186 CGCAGAGGTATGGAGCAACA 60.108 55.000 0.00 0.0 0.00 3.33 F
2335 2612 0.952497 CCTGAATGGATGATCCGGCG 60.952 60.000 7.03 0.0 40.17 6.46 F
2738 3256 1.271656 AGTAGGGACTGTACACAACGC 59.728 52.381 0.00 0.0 41.52 4.84 F
3326 3868 2.033448 TTCACCCGTGGCATGACC 59.967 61.111 8.63 0.0 39.84 4.02 F
4033 7987 3.084039 TGAAGGTGACATCAATCAAGGC 58.916 45.455 0.00 0.0 34.65 4.35 F
5567 9802 0.318955 GCAGAACCGTTTGCTTGCAT 60.319 50.000 0.00 0.0 37.35 3.96 F
6402 10641 0.036164 TAGGAACAATGGCGTGCTGT 59.964 50.000 0.00 0.0 0.00 4.40 F
7944 12280 0.314302 ACGGAGAGAGTTTCACACGG 59.686 55.000 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2522 0.511221 CCGGTGTTTAGCTGTTCACG 59.489 55.00 0.00 0.0 0.00 4.35 R
3617 4167 1.587547 TACACTCATTGCAACGCACA 58.412 45.00 0.00 0.0 38.71 4.57 R
3919 4632 3.767131 ACAAACAGTTGCCTTTAACCAGT 59.233 39.13 0.00 0.0 38.39 4.00 R
4524 8478 2.350388 GCAATGTAACCAGTCAACCACG 60.350 50.00 0.00 0.0 0.00 4.94 R
5108 9084 1.109323 ACACTTTGGAAGGCCACAGC 61.109 55.00 5.01 0.0 44.22 4.40 R
5777 10013 0.721718 GGACGATCAGCGACTTTTGG 59.278 55.00 0.00 0.0 44.57 3.28 R
7065 11307 1.014564 GCGAGTTAGGGACTGCACAC 61.015 60.00 0.00 0.0 41.52 3.82 R
8071 12407 0.373024 GCATTCGCTCTCTGTGCTTC 59.627 55.00 0.00 0.0 33.25 3.86 R
9363 13789 0.031994 ATTGTGTTTGCTTCGGGTGC 59.968 50.00 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.499479 CTTGCATCTAAAGTAATCATCATACCT 57.501 33.333 0.00 0.00 0.00 3.08
123 127 2.352814 GCATTGTAGAGTGGAGACGTGT 60.353 50.000 0.00 0.00 0.00 4.49
191 195 1.089920 GATTCAACGCCAGAGCATGT 58.910 50.000 0.00 0.00 39.83 3.21
204 208 2.575279 AGAGCATGTCCTTGGATTGACT 59.425 45.455 0.00 4.16 32.67 3.41
212 217 6.636454 TGTCCTTGGATTGACTACCTAAAT 57.364 37.500 0.00 0.00 32.67 1.40
268 273 6.260050 ACGACCATAATAGCAACCATAAAGTG 59.740 38.462 0.00 0.00 0.00 3.16
298 303 1.081892 GGCGATGAATCATCCGATGG 58.918 55.000 16.71 4.44 37.57 3.51
319 324 6.907853 TGGACATATGATGTTGTTGGAAAA 57.092 33.333 10.38 0.00 45.03 2.29
550 569 1.878522 CAGACACATACGCCGGCTC 60.879 63.158 26.68 13.46 0.00 4.70
613 632 4.112341 GTGCCTAGGCGTCGTCGT 62.112 66.667 28.28 0.00 45.51 4.34
664 683 1.335882 GGGAACGAGTAAGGAGGGGG 61.336 65.000 0.00 0.00 0.00 5.40
685 704 1.527311 GAAGTGAGGAATAATCGCCGC 59.473 52.381 0.00 0.00 0.00 6.53
709 728 1.448540 CACCGATGGACAGGTCAGC 60.449 63.158 1.41 0.00 39.00 4.26
713 732 1.826024 GATGGACAGGTCAGCGGAT 59.174 57.895 1.41 0.00 0.00 4.18
714 733 1.040646 GATGGACAGGTCAGCGGATA 58.959 55.000 1.41 0.00 0.00 2.59
752 774 1.801771 TGAATCGCGACGGACAAAAAT 59.198 42.857 12.93 0.00 0.00 1.82
755 777 0.709467 TCGCGACGGACAAAAATACG 59.291 50.000 3.71 0.00 0.00 3.06
756 778 0.709467 CGCGACGGACAAAAATACGA 59.291 50.000 0.00 0.00 0.00 3.43
757 779 1.124658 CGCGACGGACAAAAATACGAA 59.875 47.619 0.00 0.00 0.00 3.85
758 780 2.489059 GCGACGGACAAAAATACGAAC 58.511 47.619 0.00 0.00 0.00 3.95
759 781 2.096811 GCGACGGACAAAAATACGAACA 60.097 45.455 0.00 0.00 0.00 3.18
760 782 3.463127 CGACGGACAAAAATACGAACAC 58.537 45.455 0.00 0.00 0.00 3.32
765 787 3.364267 GGACAAAAATACGAACACCCGTC 60.364 47.826 0.00 0.00 43.20 4.79
781 803 3.135457 TCCATCTACGTCGGCGCA 61.135 61.111 10.50 0.00 42.83 6.09
786 808 2.971428 ATCTACGTCGGCGCATTGGG 62.971 60.000 10.50 0.00 42.83 4.12
787 809 4.823419 TACGTCGGCGCATTGGGG 62.823 66.667 10.50 0.00 42.83 4.96
816 1000 3.228017 TTCGCTCGGACCCACACA 61.228 61.111 0.00 0.00 0.00 3.72
984 1198 2.092375 AGATAGTACAAAAGGGCCTGGC 60.092 50.000 6.92 11.05 0.00 4.85
1283 1511 2.276740 CAATGTGAGCCCCTCCCC 59.723 66.667 0.00 0.00 0.00 4.81
1383 1649 2.930455 GCTCTGCTTCTGTTGGACTCTC 60.930 54.545 0.00 0.00 0.00 3.20
1791 2064 1.673767 TCCAAGGGAAGGAGAGCAAT 58.326 50.000 0.00 0.00 0.00 3.56
1824 2097 4.689549 TGCAATGGGGCTGCTGCT 62.690 61.111 15.64 0.00 40.59 4.24
1881 2157 2.224281 CCTTCGCTATGCCAACATCCTA 60.224 50.000 0.00 0.00 37.74 2.94
1947 2223 2.157668 CGTTCTTGACAAGGATGGAACG 59.842 50.000 18.95 18.95 45.62 3.95
2094 2370 6.228616 TGTGGGATGATATACAAAGACGAA 57.771 37.500 0.00 0.00 0.00 3.85
2130 2406 0.811616 CCGCAGAGGTATGGAGCAAC 60.812 60.000 0.00 0.00 34.51 4.17
2131 2407 0.108186 CGCAGAGGTATGGAGCAACA 60.108 55.000 0.00 0.00 0.00 3.33
2132 2408 1.473965 CGCAGAGGTATGGAGCAACAT 60.474 52.381 0.00 0.00 34.90 2.71
2133 2409 2.648059 GCAGAGGTATGGAGCAACATT 58.352 47.619 0.00 0.00 32.39 2.71
2134 2410 3.019564 GCAGAGGTATGGAGCAACATTT 58.980 45.455 0.00 0.00 32.39 2.32
2135 2411 4.199310 GCAGAGGTATGGAGCAACATTTA 58.801 43.478 0.00 0.00 32.39 1.40
2136 2412 4.640201 GCAGAGGTATGGAGCAACATTTAA 59.360 41.667 0.00 0.00 32.39 1.52
2137 2413 5.300286 GCAGAGGTATGGAGCAACATTTAAT 59.700 40.000 0.00 0.00 32.39 1.40
2138 2414 6.514048 GCAGAGGTATGGAGCAACATTTAATC 60.514 42.308 0.00 0.00 32.39 1.75
2139 2415 6.543465 CAGAGGTATGGAGCAACATTTAATCA 59.457 38.462 0.00 0.00 32.39 2.57
2140 2416 7.230108 CAGAGGTATGGAGCAACATTTAATCAT 59.770 37.037 0.00 0.00 32.39 2.45
2141 2417 7.781693 AGAGGTATGGAGCAACATTTAATCATT 59.218 33.333 0.00 0.00 32.39 2.57
2142 2418 8.310122 AGGTATGGAGCAACATTTAATCATTT 57.690 30.769 0.00 0.00 32.39 2.32
2143 2419 8.199449 AGGTATGGAGCAACATTTAATCATTTG 58.801 33.333 0.00 0.00 32.39 2.32
2144 2420 7.981225 GGTATGGAGCAACATTTAATCATTTGT 59.019 33.333 0.00 0.00 32.39 2.83
2145 2421 9.369904 GTATGGAGCAACATTTAATCATTTGTT 57.630 29.630 0.00 0.00 32.76 2.83
2148 2424 9.368674 TGGAGCAACATTTAATCATTTGTTATG 57.631 29.630 0.00 0.00 31.45 1.90
2149 2425 9.369904 GGAGCAACATTTAATCATTTGTTATGT 57.630 29.630 0.00 0.00 31.45 2.29
2245 2522 8.741101 TTCATAGCATTGTTGTTGTTATTGTC 57.259 30.769 0.00 0.00 0.00 3.18
2331 2608 3.889815 TGTTGACCTGAATGGATGATCC 58.110 45.455 4.05 4.05 39.71 3.36
2335 2612 0.952497 CCTGAATGGATGATCCGGCG 60.952 60.000 7.03 0.00 40.17 6.46
2397 2678 9.944376 TGCAGAATACAAGTTAGATCTAAAAGT 57.056 29.630 16.73 16.09 0.00 2.66
2405 2913 9.043548 ACAAGTTAGATCTAAAAGTAAGGGCTA 57.956 33.333 16.73 0.00 0.00 3.93
2457 2965 5.765510 TGTCCAAATTAACCTAGCCATCAT 58.234 37.500 0.00 0.00 0.00 2.45
2472 2987 3.065786 GCCATCATTGTGTCCTGTGTATG 59.934 47.826 0.00 0.00 0.00 2.39
2473 2988 4.264253 CCATCATTGTGTCCTGTGTATGT 58.736 43.478 0.00 0.00 0.00 2.29
2474 2989 5.427378 CCATCATTGTGTCCTGTGTATGTA 58.573 41.667 0.00 0.00 0.00 2.29
2475 2990 6.057533 CCATCATTGTGTCCTGTGTATGTAT 58.942 40.000 0.00 0.00 0.00 2.29
2495 3010 6.330278 TGTATAATCTCTTGTGTGACGGAAG 58.670 40.000 0.00 0.00 0.00 3.46
2535 3052 2.744202 CTGATGTGGGTAGAAAGCACAC 59.256 50.000 0.00 0.00 0.00 3.82
2643 3161 4.722279 CCTTAGAGAACTCCAACCCCTTAT 59.278 45.833 0.00 0.00 0.00 1.73
2655 3173 7.128883 ACTCCAACCCCTTATATTTAGTGTGAT 59.871 37.037 0.00 0.00 0.00 3.06
2658 3176 9.807921 CCAACCCCTTATATTTAGTGTGATTAT 57.192 33.333 0.00 0.00 0.00 1.28
2695 3213 8.907222 ACCAATCTTAGTTCGTTAGGTTAAAA 57.093 30.769 0.00 0.00 0.00 1.52
2725 3243 5.633655 TTGTCCAAAACTGTTAGTAGGGA 57.366 39.130 0.00 0.00 0.00 4.20
2736 3254 5.010415 ACTGTTAGTAGGGACTGTACACAAC 59.990 44.000 0.00 0.00 41.52 3.32
2738 3256 1.271656 AGTAGGGACTGTACACAACGC 59.728 52.381 0.00 0.00 41.52 4.84
3326 3868 2.033448 TTCACCCGTGGCATGACC 59.967 61.111 8.63 0.00 39.84 4.02
3468 4018 6.482308 GTGTAAATTCTACCGCTTACCATCAT 59.518 38.462 0.00 0.00 0.00 2.45
3478 4028 6.099341 ACCGCTTACCATCATTTTTCATTTC 58.901 36.000 0.00 0.00 0.00 2.17
3524 4074 6.708885 TGGCCTTCAAAGAGGATCATATAT 57.291 37.500 3.32 0.00 39.25 0.86
3527 4077 6.601217 GGCCTTCAAAGAGGATCATATATTCC 59.399 42.308 0.00 0.00 39.25 3.01
3564 4114 4.039004 ACTCCATGCTATACAGAAGCTCAG 59.961 45.833 0.00 0.00 40.73 3.35
3629 4179 3.127451 TTGCCTGTGCGTTGCAAT 58.873 50.000 0.59 0.00 41.47 3.56
3675 4225 5.371176 TGTTAGCCCATGATTACCTTCCATA 59.629 40.000 0.00 0.00 0.00 2.74
3800 4507 9.643693 CTTATTGTCTTGCCAAAGAAAACATAT 57.356 29.630 0.00 0.00 41.45 1.78
3888 4600 7.166167 ACGACAGAACCTTACATCCTTTTTAT 58.834 34.615 0.00 0.00 0.00 1.40
3960 4673 4.314740 TGTGTTTGATTAAGGCACAACC 57.685 40.909 7.06 0.00 37.16 3.77
4033 7987 3.084039 TGAAGGTGACATCAATCAAGGC 58.916 45.455 0.00 0.00 34.65 4.35
4344 8298 4.651994 CCGTTGAATGTTATCAAGTGAGC 58.348 43.478 0.00 0.00 39.84 4.26
4367 8321 5.220080 GCGTATGCAATTCTGTTCATGTTTG 60.220 40.000 0.89 0.00 42.15 2.93
4493 8447 5.889853 TGTCTATACGGTTCAGGTATGTTCT 59.110 40.000 0.00 0.00 33.00 3.01
4498 8452 5.069501 ACGGTTCAGGTATGTTCTTCTAC 57.930 43.478 0.00 0.00 0.00 2.59
4593 8547 4.985538 TCCATATTTAGGGCAAGATGGAC 58.014 43.478 7.97 0.00 36.37 4.02
4688 8642 6.375455 GGTAATGAACAATCAACCTCTGTCAT 59.625 38.462 0.00 0.00 39.49 3.06
4899 8867 8.059798 AGCATTGAACAGTCAGCTATAAAATT 57.940 30.769 0.00 0.00 34.45 1.82
4909 8877 9.125026 CAGTCAGCTATAAAATTGTATTCCCTT 57.875 33.333 0.00 0.00 0.00 3.95
4949 8917 6.044404 AGAGGTTCTAACTTTTCCCTGAATCA 59.956 38.462 0.00 0.00 0.00 2.57
5020 8994 8.926710 CGTCTAGTCCATATTGAAATATCCAAC 58.073 37.037 0.00 0.00 29.35 3.77
5108 9084 6.208644 AGTTTTGTCGATTTCATTGGACTTG 58.791 36.000 0.00 0.00 0.00 3.16
5135 9111 2.034685 GCCTTCCAAAGTGTCAAGGAAC 59.965 50.000 0.59 0.00 38.15 3.62
5217 9193 1.203025 ACCTCCTACTTGTCCACGAGT 60.203 52.381 4.96 4.96 42.86 4.18
5229 9464 3.256558 GTCCACGAGTAATGGGTACAAC 58.743 50.000 0.00 0.00 37.85 3.32
5230 9465 3.056322 GTCCACGAGTAATGGGTACAACT 60.056 47.826 0.00 0.00 37.85 3.16
5231 9466 4.158394 GTCCACGAGTAATGGGTACAACTA 59.842 45.833 0.00 0.00 37.85 2.24
5232 9467 4.158394 TCCACGAGTAATGGGTACAACTAC 59.842 45.833 0.00 0.00 37.85 2.73
5233 9468 4.082081 CCACGAGTAATGGGTACAACTACA 60.082 45.833 0.00 0.00 34.88 2.74
5234 9469 5.472148 CACGAGTAATGGGTACAACTACAA 58.528 41.667 0.00 0.00 34.88 2.41
5238 9473 6.749118 CGAGTAATGGGTACAACTACAAGTAC 59.251 42.308 0.00 0.00 39.80 2.73
5421 9656 3.877559 TGATCCTGATTCACGAAATGCT 58.122 40.909 0.00 0.00 0.00 3.79
5437 9672 3.508845 ATGCTGGTCAGGTACTTTGTT 57.491 42.857 0.00 0.00 34.60 2.83
5447 9682 4.103469 TCAGGTACTTTGTTAGGCCTCAAA 59.897 41.667 9.68 14.25 34.60 2.69
5566 9801 1.065600 GCAGAACCGTTTGCTTGCA 59.934 52.632 9.71 0.00 37.35 4.08
5567 9802 0.318955 GCAGAACCGTTTGCTTGCAT 60.319 50.000 0.00 0.00 37.35 3.96
5578 9813 5.682862 CCGTTTGCTTGCATTGAACTATATC 59.317 40.000 0.00 0.00 0.00 1.63
5777 10013 6.183360 TGCACAGTATACTAGTTGGGATAACC 60.183 42.308 4.74 0.00 40.81 2.85
5966 10202 3.026694 GCTATTCTGGATTTTGGGCACT 58.973 45.455 0.00 0.00 0.00 4.40
6120 10359 9.555727 AACTAGAAAAGAAGTAACTGCAATGTA 57.444 29.630 0.00 0.00 0.00 2.29
6148 10387 2.777692 TCAAGGTGGATCTGGGGTTATC 59.222 50.000 0.00 0.00 0.00 1.75
6400 10639 0.324943 ACTAGGAACAATGGCGTGCT 59.675 50.000 0.00 0.00 0.00 4.40
6402 10641 0.036164 TAGGAACAATGGCGTGCTGT 59.964 50.000 0.00 0.00 0.00 4.40
6453 10692 3.312973 ACGTGGCATTTCAACGACTTAAA 59.687 39.130 0.97 0.00 0.00 1.52
6525 10766 2.507471 CTGGGAGCTTCTATTTGTCCCT 59.493 50.000 7.23 0.00 46.32 4.20
6549 10790 3.324846 TCCATCCCTATCCACTCAAATCG 59.675 47.826 0.00 0.00 0.00 3.34
6563 10804 5.465390 CACTCAAATCGTTCCAAGTAGTTCA 59.535 40.000 0.00 0.00 0.00 3.18
6578 10819 7.011202 CCAAGTAGTTCATGATCAATGAGTCAG 59.989 40.741 0.00 0.00 46.01 3.51
6609 10850 1.321474 CTGTTTTGCTGAGAAGGGCA 58.679 50.000 0.00 0.00 36.62 5.36
6634 10875 6.877668 TTCTAACTTGGGTATGTATGTCCA 57.122 37.500 0.00 0.00 0.00 4.02
6732 10973 5.529060 GGCTGATTCTCCTAATACAAACCAG 59.471 44.000 0.00 0.00 0.00 4.00
6753 10994 4.639310 CAGAAGTATGCCAGATGCTTTTCT 59.361 41.667 0.00 0.00 42.00 2.52
6764 11005 7.609918 TGCCAGATGCTTTTCTTGTAGTTATTA 59.390 33.333 0.00 0.00 42.00 0.98
6798 11039 1.614413 CTCCCTATGCGTCTAGAACCC 59.386 57.143 0.00 0.00 0.00 4.11
6830 11071 0.803117 CTGTCTGCAGGCATGTTGAG 59.197 55.000 23.50 4.86 39.01 3.02
6896 11137 1.905354 AGAAGCTGGGCCAGTTTGC 60.905 57.895 35.92 25.68 35.20 3.68
6924 11165 4.815308 CACCAGCAATTTCAAATGGTTTCA 59.185 37.500 0.00 0.00 42.29 2.69
6985 11226 9.284594 GCATAACAGATTTGAACGCTTTATTTA 57.715 29.630 0.00 0.00 0.00 1.40
7065 11307 3.055963 TGCAAGTTTGGGCCAGAATATTG 60.056 43.478 6.23 9.65 0.00 1.90
7083 11325 0.317160 TGTGTGCAGTCCCTAACTCG 59.683 55.000 0.00 0.00 35.45 4.18
7125 11367 2.611292 GCCATTCTGCTGTGACAGTATC 59.389 50.000 14.82 0.00 38.84 2.24
7170 11412 1.700186 GAGGAGTTGGGTTTGGAGTCT 59.300 52.381 0.00 0.00 0.00 3.24
7299 11632 9.494271 TTGTGTCATATTTAGGATCTTCTATGC 57.506 33.333 0.00 0.00 0.00 3.14
7340 11673 7.273712 TGTCAGGGTGTGCGTTTATATATAAA 58.726 34.615 12.90 12.90 0.00 1.40
7456 11792 1.802069 GGTGTTCCTCTGAAGCTGAC 58.198 55.000 0.00 0.00 0.00 3.51
7651 11987 9.313118 AGGCGGACATGAATTTTTATTTATTTC 57.687 29.630 0.00 0.00 0.00 2.17
7824 12160 1.104577 TGGTTGCCAAAACGGAGGAC 61.105 55.000 0.00 0.00 36.56 3.85
7847 12183 4.449068 CGAATATGTTAGCTTAGCACTGGG 59.551 45.833 7.07 0.00 0.00 4.45
7923 12259 6.057627 CTGATGATAAAATCACCAGTCTGC 57.942 41.667 3.47 0.00 44.36 4.26
7944 12280 0.314302 ACGGAGAGAGTTTCACACGG 59.686 55.000 0.00 0.00 0.00 4.94
8019 12355 1.827789 AGCTCTCAGGCGCCTAGAG 60.828 63.158 34.84 34.84 39.81 2.43
8346 12682 2.086869 GCAGGCACACACTGATGTATT 58.913 47.619 0.00 0.00 36.72 1.89
8347 12683 3.270027 GCAGGCACACACTGATGTATTA 58.730 45.455 0.00 0.00 36.72 0.98
8402 12738 4.101448 GTCGCTGCTGGGGGTCAT 62.101 66.667 7.80 0.00 0.00 3.06
8448 12784 1.804748 GGAAACGGATGTGGTTCTGAC 59.195 52.381 0.00 0.00 0.00 3.51
8513 12850 3.269381 TGGGGGATGCTTAGTCTGATTTT 59.731 43.478 0.00 0.00 0.00 1.82
8697 13112 2.151502 TTTGGTTTCTGTTGGCCTCA 57.848 45.000 3.32 2.31 0.00 3.86
8791 13206 8.465273 AAAAGAGTTAAATATATCAGGGGTGC 57.535 34.615 0.00 0.00 0.00 5.01
8792 13207 6.128138 AGAGTTAAATATATCAGGGGTGCC 57.872 41.667 0.00 0.00 0.00 5.01
8793 13208 5.852250 AGAGTTAAATATATCAGGGGTGCCT 59.148 40.000 0.00 0.00 0.00 4.75
8794 13209 7.023120 AGAGTTAAATATATCAGGGGTGCCTA 58.977 38.462 0.00 0.00 0.00 3.93
8795 13210 7.516209 AGAGTTAAATATATCAGGGGTGCCTAA 59.484 37.037 0.00 0.00 0.00 2.69
8796 13211 8.052621 AGTTAAATATATCAGGGGTGCCTAAA 57.947 34.615 0.00 0.00 0.00 1.85
8797 13212 7.942894 AGTTAAATATATCAGGGGTGCCTAAAC 59.057 37.037 0.00 0.00 0.00 2.01
8798 13213 6.530601 AAATATATCAGGGGTGCCTAAACT 57.469 37.500 0.00 0.00 0.00 2.66
8799 13214 6.530601 AATATATCAGGGGTGCCTAAACTT 57.469 37.500 0.00 0.00 0.00 2.66
8800 13215 2.514458 ATCAGGGGTGCCTAAACTTG 57.486 50.000 0.00 0.00 0.00 3.16
8801 13216 1.145571 TCAGGGGTGCCTAAACTTGT 58.854 50.000 0.00 0.00 0.00 3.16
8802 13217 1.073284 TCAGGGGTGCCTAAACTTGTC 59.927 52.381 0.00 0.00 0.00 3.18
8803 13218 0.404426 AGGGGTGCCTAAACTTGTCC 59.596 55.000 0.00 0.00 0.00 4.02
8804 13219 0.611062 GGGGTGCCTAAACTTGTCCC 60.611 60.000 0.00 0.00 0.00 4.46
8805 13220 0.958876 GGGTGCCTAAACTTGTCCCG 60.959 60.000 0.00 0.00 0.00 5.14
8806 13221 0.250597 GGTGCCTAAACTTGTCCCGT 60.251 55.000 0.00 0.00 0.00 5.28
8807 13222 0.872388 GTGCCTAAACTTGTCCCGTG 59.128 55.000 0.00 0.00 0.00 4.94
8808 13223 0.887387 TGCCTAAACTTGTCCCGTGC 60.887 55.000 0.00 0.00 0.00 5.34
8809 13224 1.908066 GCCTAAACTTGTCCCGTGCG 61.908 60.000 0.00 0.00 0.00 5.34
8810 13225 1.495951 CTAAACTTGTCCCGTGCGC 59.504 57.895 0.00 0.00 0.00 6.09
8811 13226 2.222953 CTAAACTTGTCCCGTGCGCG 62.223 60.000 13.88 13.88 37.95 6.86
8812 13227 2.974935 TAAACTTGTCCCGTGCGCGT 62.975 55.000 19.61 0.00 36.15 6.01
8839 13254 2.282391 GCAGTGGCCCATGTGTCA 60.282 61.111 0.00 0.00 0.00 3.58
8840 13255 2.338015 GCAGTGGCCCATGTGTCAG 61.338 63.158 0.00 0.00 0.00 3.51
8841 13256 1.676635 CAGTGGCCCATGTGTCAGG 60.677 63.158 0.00 0.00 0.00 3.86
8847 13262 2.753043 CCATGTGTCAGGGGCTGC 60.753 66.667 0.00 0.00 30.99 5.25
8848 13263 3.129502 CATGTGTCAGGGGCTGCG 61.130 66.667 0.00 0.00 0.00 5.18
8849 13264 3.640407 ATGTGTCAGGGGCTGCGT 61.640 61.111 0.00 0.00 0.00 5.24
8850 13265 3.907260 ATGTGTCAGGGGCTGCGTG 62.907 63.158 0.00 0.00 0.00 5.34
8876 13291 3.508840 CGTTGAATGCCCCGCTCC 61.509 66.667 0.00 0.00 0.00 4.70
8990 13412 6.642707 ATGGAAAAATAACGTGGAGTTTCA 57.357 33.333 13.65 3.70 43.86 2.69
9036 13461 1.965930 GCACGATCCAGCCACACAA 60.966 57.895 0.00 0.00 0.00 3.33
9037 13462 1.915614 GCACGATCCAGCCACACAAG 61.916 60.000 0.00 0.00 0.00 3.16
9054 13479 3.013921 ACAAGTGAACTTTGCTTTCCGA 58.986 40.909 0.00 0.00 33.11 4.55
9176 13602 9.445786 AAAGTTCATGTTTAGTTTTATGACACG 57.554 29.630 0.00 0.00 29.96 4.49
9177 13603 7.075741 AGTTCATGTTTAGTTTTATGACACGC 58.924 34.615 0.00 0.00 29.96 5.34
9178 13604 6.546972 TCATGTTTAGTTTTATGACACGCA 57.453 33.333 0.00 0.00 0.00 5.24
9179 13605 6.960468 TCATGTTTAGTTTTATGACACGCAA 58.040 32.000 0.00 0.00 0.00 4.85
9180 13606 7.418408 TCATGTTTAGTTTTATGACACGCAAA 58.582 30.769 0.00 0.00 0.00 3.68
9181 13607 7.915923 TCATGTTTAGTTTTATGACACGCAAAA 59.084 29.630 0.00 0.00 0.00 2.44
9182 13608 8.698854 CATGTTTAGTTTTATGACACGCAAAAT 58.301 29.630 0.00 0.00 0.00 1.82
9183 13609 8.635877 TGTTTAGTTTTATGACACGCAAAATT 57.364 26.923 0.00 0.00 0.00 1.82
9184 13610 9.088512 TGTTTAGTTTTATGACACGCAAAATTT 57.911 25.926 0.00 0.00 0.00 1.82
9185 13611 9.562752 GTTTAGTTTTATGACACGCAAAATTTC 57.437 29.630 0.00 0.00 0.00 2.17
9186 13612 6.763303 AGTTTTATGACACGCAAAATTTCC 57.237 33.333 0.00 0.00 0.00 3.13
9187 13613 5.694458 AGTTTTATGACACGCAAAATTTCCC 59.306 36.000 0.00 0.00 0.00 3.97
9188 13614 4.855715 TTATGACACGCAAAATTTCCCA 57.144 36.364 0.00 0.00 0.00 4.37
9189 13615 3.959535 ATGACACGCAAAATTTCCCAT 57.040 38.095 0.00 0.00 0.00 4.00
9190 13616 6.516739 TTATGACACGCAAAATTTCCCATA 57.483 33.333 0.00 0.00 0.00 2.74
9191 13617 5.596836 ATGACACGCAAAATTTCCCATAT 57.403 34.783 0.00 0.00 0.00 1.78
9192 13618 6.707440 ATGACACGCAAAATTTCCCATATA 57.293 33.333 0.00 0.00 0.00 0.86
9193 13619 6.516739 TGACACGCAAAATTTCCCATATAA 57.483 33.333 0.00 0.00 0.00 0.98
9194 13620 6.925211 TGACACGCAAAATTTCCCATATAAA 58.075 32.000 0.00 0.00 0.00 1.40
9195 13621 7.378966 TGACACGCAAAATTTCCCATATAAAA 58.621 30.769 0.00 0.00 0.00 1.52
9196 13622 7.872993 TGACACGCAAAATTTCCCATATAAAAA 59.127 29.630 0.00 0.00 0.00 1.94
9197 13623 8.785329 ACACGCAAAATTTCCCATATAAAAAT 57.215 26.923 0.00 0.00 0.00 1.82
9198 13624 9.877178 ACACGCAAAATTTCCCATATAAAAATA 57.123 25.926 0.00 0.00 0.00 1.40
9200 13626 9.877178 ACGCAAAATTTCCCATATAAAAATACA 57.123 25.926 0.00 0.00 0.00 2.29
9268 13694 9.710979 TTTCTTCTTTTGTTATCGTGTACTTTG 57.289 29.630 0.00 0.00 0.00 2.77
9269 13695 8.651391 TCTTCTTTTGTTATCGTGTACTTTGA 57.349 30.769 0.00 0.00 0.00 2.69
9270 13696 9.100554 TCTTCTTTTGTTATCGTGTACTTTGAA 57.899 29.630 0.00 0.00 0.00 2.69
9271 13697 9.370126 CTTCTTTTGTTATCGTGTACTTTGAAG 57.630 33.333 0.00 0.00 0.00 3.02
9272 13698 8.651391 TCTTTTGTTATCGTGTACTTTGAAGA 57.349 30.769 0.00 0.00 0.00 2.87
9273 13699 8.761497 TCTTTTGTTATCGTGTACTTTGAAGAG 58.239 33.333 0.00 0.00 0.00 2.85
9274 13700 8.428186 TTTTGTTATCGTGTACTTTGAAGAGT 57.572 30.769 0.00 0.00 0.00 3.24
9275 13701 8.428186 TTTGTTATCGTGTACTTTGAAGAGTT 57.572 30.769 0.00 0.00 0.00 3.01
9276 13702 9.531942 TTTGTTATCGTGTACTTTGAAGAGTTA 57.468 29.630 0.00 0.00 0.00 2.24
9277 13703 9.531942 TTGTTATCGTGTACTTTGAAGAGTTAA 57.468 29.630 0.00 0.00 0.00 2.01
9278 13704 9.531942 TGTTATCGTGTACTTTGAAGAGTTAAA 57.468 29.630 0.00 0.00 0.00 1.52
9323 13749 7.931578 ATGTCGATTTAAATAGTTCAACCCA 57.068 32.000 0.00 0.00 0.00 4.51
9324 13750 7.931578 TGTCGATTTAAATAGTTCAACCCAT 57.068 32.000 0.00 0.00 0.00 4.00
9325 13751 9.621629 ATGTCGATTTAAATAGTTCAACCCATA 57.378 29.630 0.00 0.00 0.00 2.74
9326 13752 9.621629 TGTCGATTTAAATAGTTCAACCCATAT 57.378 29.630 0.00 0.00 0.00 1.78
9368 13794 7.807977 ATTCATATATATTCATTCCGCACCC 57.192 36.000 0.00 0.00 0.00 4.61
9369 13795 5.356426 TCATATATATTCATTCCGCACCCG 58.644 41.667 0.00 0.00 0.00 5.28
9370 13796 3.973206 ATATATTCATTCCGCACCCGA 57.027 42.857 0.00 0.00 36.29 5.14
9371 13797 2.631160 ATATTCATTCCGCACCCGAA 57.369 45.000 0.00 0.00 36.29 4.30
9372 13798 1.948104 TATTCATTCCGCACCCGAAG 58.052 50.000 0.00 0.00 36.29 3.79
9373 13799 1.376609 ATTCATTCCGCACCCGAAGC 61.377 55.000 0.00 0.00 36.29 3.86
9374 13800 2.739849 TTCATTCCGCACCCGAAGCA 62.740 55.000 0.00 0.00 36.29 3.91
9375 13801 2.033448 ATTCCGCACCCGAAGCAA 59.967 55.556 0.00 0.00 36.29 3.91
9376 13802 1.602323 ATTCCGCACCCGAAGCAAA 60.602 52.632 0.00 0.00 36.29 3.68
9377 13803 1.862602 ATTCCGCACCCGAAGCAAAC 61.863 55.000 0.00 0.00 36.29 2.93
9378 13804 3.283684 CCGCACCCGAAGCAAACA 61.284 61.111 0.00 0.00 36.29 2.83
9379 13805 2.051345 CGCACCCGAAGCAAACAC 60.051 61.111 0.00 0.00 36.29 3.32
9380 13806 2.829206 CGCACCCGAAGCAAACACA 61.829 57.895 0.00 0.00 36.29 3.72
9381 13807 1.435515 GCACCCGAAGCAAACACAA 59.564 52.632 0.00 0.00 0.00 3.33
9382 13808 0.031994 GCACCCGAAGCAAACACAAT 59.968 50.000 0.00 0.00 0.00 2.71
9383 13809 1.537990 GCACCCGAAGCAAACACAATT 60.538 47.619 0.00 0.00 0.00 2.32
9384 13810 2.287909 GCACCCGAAGCAAACACAATTA 60.288 45.455 0.00 0.00 0.00 1.40
9385 13811 3.613910 GCACCCGAAGCAAACACAATTAT 60.614 43.478 0.00 0.00 0.00 1.28
9386 13812 4.380023 GCACCCGAAGCAAACACAATTATA 60.380 41.667 0.00 0.00 0.00 0.98
9387 13813 5.331902 CACCCGAAGCAAACACAATTATAG 58.668 41.667 0.00 0.00 0.00 1.31
9388 13814 4.142469 ACCCGAAGCAAACACAATTATAGC 60.142 41.667 0.00 0.00 0.00 2.97
9389 13815 4.028383 CCGAAGCAAACACAATTATAGCG 58.972 43.478 0.00 0.00 0.00 4.26
9420 13846 8.891928 CAAGTTCATGTTTAGTTTTATGACACG 58.108 33.333 0.00 0.00 29.96 4.49
9518 13945 8.428186 TTTTGTTATCGTGTACTTTGAAGAGT 57.572 30.769 0.00 0.00 0.00 3.24
9529 13957 9.997482 GTGTACTTTGAAGAGTTAAAATGAACA 57.003 29.630 0.00 0.00 0.00 3.18
9619 14052 0.674581 TCATTCCGCACCAGAAGCAG 60.675 55.000 0.00 0.00 0.00 4.24
9630 14063 4.635765 GCACCAGAAGCAGACACAATTATA 59.364 41.667 0.00 0.00 0.00 0.98
9632 14065 4.878397 ACCAGAAGCAGACACAATTATAGC 59.122 41.667 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.820728 TATTCGAGAGGGAGTGGTGA 57.179 50.000 0.00 0.00 0.00 4.02
191 195 8.217799 CCAATATTTAGGTAGTCAATCCAAGGA 58.782 37.037 0.00 0.00 0.00 3.36
204 208 3.329520 AGGATGCGGCCAATATTTAGGTA 59.670 43.478 2.24 0.00 0.00 3.08
212 217 3.181445 ACATTTCTAGGATGCGGCCAATA 60.181 43.478 2.24 0.00 0.00 1.90
268 273 1.068083 TCATCGCCCGAAGATGAGC 59.932 57.895 11.51 0.00 46.52 4.26
319 324 4.576463 GGCCGATAGTGATGATGAGTTTTT 59.424 41.667 0.00 0.00 0.00 1.94
524 542 1.533965 GCGTATGTGTCTGCTCATCGA 60.534 52.381 0.00 0.00 32.01 3.59
636 655 1.171308 TACTCGTTCCCTCGACCTTG 58.829 55.000 0.00 0.00 35.91 3.61
637 656 1.817447 CTTACTCGTTCCCTCGACCTT 59.183 52.381 0.00 0.00 35.91 3.50
641 660 1.681166 CCTCCTTACTCGTTCCCTCGA 60.681 57.143 0.00 0.00 38.19 4.04
664 683 2.135933 CGGCGATTATTCCTCACTTCC 58.864 52.381 0.00 0.00 0.00 3.46
665 684 1.527311 GCGGCGATTATTCCTCACTTC 59.473 52.381 12.98 0.00 0.00 3.01
671 690 1.160329 GCACAGCGGCGATTATTCCT 61.160 55.000 12.98 0.00 0.00 3.36
685 704 1.742880 CTGTCCATCGGTGGCACAG 60.743 63.158 23.74 23.74 45.63 3.66
697 716 0.824109 CTTATCCGCTGACCTGTCCA 59.176 55.000 0.00 0.00 0.00 4.02
702 721 2.797278 CGCCCTTATCCGCTGACCT 61.797 63.158 0.00 0.00 0.00 3.85
709 728 3.456105 GACACCCCGCCCTTATCCG 62.456 68.421 0.00 0.00 0.00 4.18
752 774 1.745087 GTAGATGGACGGGTGTTCGTA 59.255 52.381 0.00 0.00 43.96 3.43
755 777 3.340727 CGTAGATGGACGGGTGTTC 57.659 57.895 0.00 0.00 39.19 3.18
765 787 1.591594 AATGCGCCGACGTAGATGG 60.592 57.895 4.18 0.00 42.83 3.51
781 803 1.110518 AACCGAAAACACGCCCCAAT 61.111 50.000 0.00 0.00 0.00 3.16
786 808 2.426261 GCGAACCGAAAACACGCC 60.426 61.111 0.00 0.00 42.79 5.68
885 1069 1.140052 TCCTTTTCCTGCACTCGTGAA 59.860 47.619 0.39 0.00 0.00 3.18
889 1073 0.519077 GCTTCCTTTTCCTGCACTCG 59.481 55.000 0.00 0.00 0.00 4.18
890 1074 0.884514 GGCTTCCTTTTCCTGCACTC 59.115 55.000 0.00 0.00 0.00 3.51
891 1075 0.890996 CGGCTTCCTTTTCCTGCACT 60.891 55.000 0.00 0.00 0.00 4.40
892 1076 1.581447 CGGCTTCCTTTTCCTGCAC 59.419 57.895 0.00 0.00 0.00 4.57
893 1077 2.268076 GCGGCTTCCTTTTCCTGCA 61.268 57.895 0.00 0.00 0.00 4.41
1383 1649 0.249398 AGGGCGTGCCAAGTAGTAAG 59.751 55.000 13.76 0.00 37.98 2.34
1535 1801 2.479198 GCAGTAAAAGTCGCGGCC 59.521 61.111 7.31 0.00 0.00 6.13
1791 2064 4.680237 CAGTCAGGAACGGCGCCA 62.680 66.667 28.98 0.53 0.00 5.69
1833 2106 3.437795 CCTTCCGGCAGCTGCTTG 61.438 66.667 35.82 27.27 41.70 4.01
1881 2157 1.833860 CAAATTTGTTGCGTGACCGT 58.166 45.000 10.15 0.00 36.15 4.83
1947 2223 1.543429 CCGATAAGGGCCTCCACATTC 60.543 57.143 6.46 0.00 35.97 2.67
2094 2370 1.456287 GGCCTCAACCAAGTGACCT 59.544 57.895 0.00 0.00 0.00 3.85
2134 2410 9.176460 TGAGAGAATGCACATAACAAATGATTA 57.824 29.630 0.00 0.00 0.00 1.75
2135 2411 8.058667 TGAGAGAATGCACATAACAAATGATT 57.941 30.769 0.00 0.00 0.00 2.57
2136 2412 7.634671 TGAGAGAATGCACATAACAAATGAT 57.365 32.000 0.00 0.00 0.00 2.45
2137 2413 7.555195 AGATGAGAGAATGCACATAACAAATGA 59.445 33.333 0.00 0.00 0.00 2.57
2138 2414 7.704271 AGATGAGAGAATGCACATAACAAATG 58.296 34.615 0.00 0.00 0.00 2.32
2139 2415 7.876936 AGATGAGAGAATGCACATAACAAAT 57.123 32.000 0.00 0.00 0.00 2.32
2140 2416 8.969260 ATAGATGAGAGAATGCACATAACAAA 57.031 30.769 0.00 0.00 0.00 2.83
2141 2417 8.427276 AGATAGATGAGAGAATGCACATAACAA 58.573 33.333 0.00 0.00 0.00 2.83
2142 2418 7.871463 CAGATAGATGAGAGAATGCACATAACA 59.129 37.037 0.00 0.00 0.00 2.41
2143 2419 7.148606 GCAGATAGATGAGAGAATGCACATAAC 60.149 40.741 0.00 0.00 32.79 1.89
2144 2420 6.872547 GCAGATAGATGAGAGAATGCACATAA 59.127 38.462 0.00 0.00 32.79 1.90
2145 2421 6.210984 AGCAGATAGATGAGAGAATGCACATA 59.789 38.462 0.00 0.00 34.93 2.29
2146 2422 5.012251 AGCAGATAGATGAGAGAATGCACAT 59.988 40.000 0.00 0.00 34.93 3.21
2147 2423 4.344390 AGCAGATAGATGAGAGAATGCACA 59.656 41.667 0.00 0.00 34.93 4.57
2148 2424 4.687018 CAGCAGATAGATGAGAGAATGCAC 59.313 45.833 0.00 0.00 35.00 4.57
2149 2425 4.262506 CCAGCAGATAGATGAGAGAATGCA 60.263 45.833 0.00 0.00 35.00 3.96
2150 2426 4.247258 CCAGCAGATAGATGAGAGAATGC 58.753 47.826 0.00 0.00 35.00 3.56
2245 2522 0.511221 CCGGTGTTTAGCTGTTCACG 59.489 55.000 0.00 0.00 0.00 4.35
2331 2608 2.883574 TCAGGAAACATACTAACGCCG 58.116 47.619 0.00 0.00 0.00 6.46
2397 2678 4.160252 ACGGAAGTTCGTAAATAGCCCTTA 59.840 41.667 0.00 0.00 46.40 2.69
2457 2965 8.306313 AGAGATTATACATACACAGGACACAA 57.694 34.615 0.00 0.00 0.00 3.33
2472 2987 6.331061 ACTTCCGTCACACAAGAGATTATAC 58.669 40.000 0.00 0.00 0.00 1.47
2473 2988 6.525578 ACTTCCGTCACACAAGAGATTATA 57.474 37.500 0.00 0.00 0.00 0.98
2474 2989 5.407407 ACTTCCGTCACACAAGAGATTAT 57.593 39.130 0.00 0.00 0.00 1.28
2475 2990 4.866508 ACTTCCGTCACACAAGAGATTA 57.133 40.909 0.00 0.00 0.00 1.75
2535 3052 3.005684 TGCCCTGATTTAGCAAACACTTG 59.994 43.478 0.00 0.00 32.56 3.16
2602 3119 9.775539 TCTCTAAGGGAGAAATAGTATGCATAT 57.224 33.333 10.16 2.05 46.85 1.78
2631 3149 6.894735 TCACACTAAATATAAGGGGTTGGA 57.105 37.500 0.00 0.00 0.00 3.53
2666 3184 8.907222 AACCTAACGAACTAAGATTGGTTAAA 57.093 30.769 0.00 0.00 33.90 1.52
2667 3185 9.995003 TTAACCTAACGAACTAAGATTGGTTAA 57.005 29.630 0.00 0.00 41.91 2.01
2695 3213 8.635765 ACTAACAGTTTTGGACAATATGATGT 57.364 30.769 0.00 0.00 35.90 3.06
2703 3221 5.131475 AGTCCCTACTAACAGTTTTGGACAA 59.869 40.000 16.91 0.00 39.41 3.18
2725 3243 5.806366 AACTTAAAAGCGTTGTGTACAGT 57.194 34.783 0.00 0.00 0.00 3.55
2798 3318 4.021981 CCTGTTCCAGATTGTTTTTCCTCC 60.022 45.833 0.00 0.00 32.44 4.30
2799 3319 4.559502 GCCTGTTCCAGATTGTTTTTCCTC 60.560 45.833 0.00 0.00 32.44 3.71
2800 3320 3.321968 GCCTGTTCCAGATTGTTTTTCCT 59.678 43.478 0.00 0.00 32.44 3.36
2823 3344 3.120338 CCGCACTTCGAGCTTTTTGATAA 60.120 43.478 0.00 0.00 41.67 1.75
3034 3573 8.446273 GCATAAATCAGGTGTATACATTAGCAG 58.554 37.037 9.18 0.00 0.00 4.24
3468 4018 8.463607 AGTCGGTAAAAGAACAGAAATGAAAAA 58.536 29.630 0.00 0.00 0.00 1.94
3478 4028 6.347402 CCATGTTACAGTCGGTAAAAGAACAG 60.347 42.308 0.00 0.00 43.30 3.16
3524 4074 6.321181 GCATGGAGTAAACAATGGAATAGGAA 59.679 38.462 0.00 0.00 0.00 3.36
3527 4077 6.949352 AGCATGGAGTAAACAATGGAATAG 57.051 37.500 0.00 0.00 0.00 1.73
3617 4167 1.587547 TACACTCATTGCAACGCACA 58.412 45.000 0.00 0.00 38.71 4.57
3814 4521 4.335594 CCCATTCCCTCGTCTTTTATTGAC 59.664 45.833 0.00 0.00 0.00 3.18
3888 4600 5.429109 AGGTGTCAGTACTATCTCTCCTACA 59.571 44.000 0.00 0.00 0.00 2.74
3919 4632 3.767131 ACAAACAGTTGCCTTTAACCAGT 59.233 39.130 0.00 0.00 38.39 4.00
4033 7987 4.572389 AGAGCTTTCTTGTAATATGCCACG 59.428 41.667 0.00 0.00 0.00 4.94
4344 8298 5.858049 ACAAACATGAACAGAATTGCATACG 59.142 36.000 0.00 0.00 0.00 3.06
4367 8321 6.589139 AGGCAATAAGTAAACACGACTCTAAC 59.411 38.462 0.00 0.00 0.00 2.34
4407 8361 6.418057 AATTGACAAGGCCATCTACAAAAA 57.582 33.333 5.01 0.00 0.00 1.94
4408 8362 7.531857 TTAATTGACAAGGCCATCTACAAAA 57.468 32.000 5.01 0.00 0.00 2.44
4409 8363 6.350110 GCTTAATTGACAAGGCCATCTACAAA 60.350 38.462 5.01 0.00 0.00 2.83
4410 8364 5.125417 GCTTAATTGACAAGGCCATCTACAA 59.875 40.000 5.01 5.16 0.00 2.41
4411 8365 4.640201 GCTTAATTGACAAGGCCATCTACA 59.360 41.667 5.01 0.00 0.00 2.74
4524 8478 2.350388 GCAATGTAACCAGTCAACCACG 60.350 50.000 0.00 0.00 0.00 4.94
4572 8526 3.753272 CGTCCATCTTGCCCTAAATATGG 59.247 47.826 0.00 0.00 35.02 2.74
4832 8796 4.729227 TCGTTCAATACTGCCTGTATGA 57.271 40.909 0.00 0.00 40.69 2.15
4899 8867 9.158233 CTTATAAAAGTGAACGAAGGGAATACA 57.842 33.333 0.00 0.00 0.00 2.29
4909 8877 9.415544 GTTAGAACCTCTTATAAAAGTGAACGA 57.584 33.333 0.00 0.00 34.13 3.85
4940 8908 7.254137 CGTCTATATACACATCTGATTCAGGG 58.746 42.308 13.59 8.88 31.51 4.45
4949 8917 7.590322 CACTAAAACGCGTCTATATACACATCT 59.410 37.037 14.44 0.00 0.00 2.90
5020 8994 5.178797 ACCTCCGTTCTGAATTAAGATGTG 58.821 41.667 0.00 0.00 0.00 3.21
5033 9009 4.704057 CCTGTTTACTACTACCTCCGTTCT 59.296 45.833 0.00 0.00 0.00 3.01
5108 9084 1.109323 ACACTTTGGAAGGCCACAGC 61.109 55.000 5.01 0.00 44.22 4.40
5178 9154 5.445964 GAGGTACACACATTGGGGAATATT 58.554 41.667 0.00 0.00 0.00 1.28
5217 9193 5.714333 TCCGTACTTGTAGTTGTACCCATTA 59.286 40.000 0.00 0.00 36.59 1.90
5229 9464 3.064207 TGCAAAGCTTCCGTACTTGTAG 58.936 45.455 0.00 0.00 0.00 2.74
5230 9465 3.114668 TGCAAAGCTTCCGTACTTGTA 57.885 42.857 0.00 0.00 0.00 2.41
5231 9466 1.961793 TGCAAAGCTTCCGTACTTGT 58.038 45.000 0.00 0.00 0.00 3.16
5232 9467 3.347958 TTTGCAAAGCTTCCGTACTTG 57.652 42.857 8.05 0.00 0.00 3.16
5233 9468 4.379339 TTTTTGCAAAGCTTCCGTACTT 57.621 36.364 12.41 0.00 0.00 2.24
5234 9469 4.584327 ATTTTTGCAAAGCTTCCGTACT 57.416 36.364 12.41 0.00 0.00 2.73
5238 9473 7.575365 AGAAAATAATTTTTGCAAAGCTTCCG 58.425 30.769 12.41 0.00 35.20 4.30
5364 9599 9.445878 CATCTTTCATATGCCTGTACAGATAAT 57.554 33.333 24.68 15.46 0.00 1.28
5421 9656 2.039348 GGCCTAACAAAGTACCTGACCA 59.961 50.000 0.00 0.00 0.00 4.02
5437 9672 8.700439 AGTTTAAATAACAAGTTTGAGGCCTA 57.300 30.769 4.42 0.00 0.00 3.93
5469 9704 7.739498 TCATATAGCGACATACAAGAGTACA 57.261 36.000 0.00 0.00 31.96 2.90
5566 9801 3.827302 AGCCCTCGTCGATATAGTTCAAT 59.173 43.478 0.00 0.00 0.00 2.57
5567 9802 3.220110 AGCCCTCGTCGATATAGTTCAA 58.780 45.455 0.00 0.00 0.00 2.69
5578 9813 1.064946 GTCATCTGAGCCCTCGTCG 59.935 63.158 0.00 0.00 0.00 5.12
5777 10013 0.721718 GGACGATCAGCGACTTTTGG 59.278 55.000 0.00 0.00 44.57 3.28
5778 10014 1.126846 GTGGACGATCAGCGACTTTTG 59.873 52.381 0.00 0.00 44.57 2.44
5845 10081 3.154589 GGGGGCTTCAACGAAGTAG 57.845 57.895 5.68 0.00 45.00 2.57
5966 10202 6.265196 AGCCAAAATAAGTTGATTGTCACTGA 59.735 34.615 0.00 0.00 0.00 3.41
6001 10237 9.819267 TGTTTTTGTTTAGTTAAAGGGGTAATG 57.181 29.630 0.00 0.00 0.00 1.90
6034 10272 2.009681 TCTCTAGCTGTTGGACACCA 57.990 50.000 0.00 0.00 0.00 4.17
6035 10273 3.618690 ATTCTCTAGCTGTTGGACACC 57.381 47.619 0.00 0.00 0.00 4.16
6094 10333 8.451908 ACATTGCAGTTACTTCTTTTCTAGTT 57.548 30.769 0.00 0.00 0.00 2.24
6104 10343 7.974675 TGATAGCTTTACATTGCAGTTACTTC 58.025 34.615 0.00 0.00 0.00 3.01
6120 10359 3.117738 CCCAGATCCACCTTGATAGCTTT 60.118 47.826 0.00 0.00 0.00 3.51
6148 10387 7.335171 TGTGTGAACAGAAGGATAAATGATGAG 59.665 37.037 0.00 0.00 0.00 2.90
6453 10692 9.590451 CATATGCAAGGTGTTCTGAAAATAAAT 57.410 29.630 0.00 0.00 0.00 1.40
6525 10766 5.687441 CGATTTGAGTGGATAGGGATGGAAA 60.687 44.000 0.00 0.00 0.00 3.13
6549 10790 7.335422 ACTCATTGATCATGAACTACTTGGAAC 59.665 37.037 0.00 0.00 41.66 3.62
6563 10804 6.706716 CAGATAGCAACTGACTCATTGATCAT 59.293 38.462 0.00 0.00 37.54 2.45
6578 10819 4.214119 TCAGCAAAACAGTCAGATAGCAAC 59.786 41.667 0.00 0.00 0.00 4.17
6609 10850 7.867921 TGGACATACATACCCAAGTTAGAAAT 58.132 34.615 0.00 0.00 0.00 2.17
6634 10875 6.362248 GGTAACCAATCCATGTAACCTGTAT 58.638 40.000 0.00 0.00 0.00 2.29
6753 10994 9.448438 AGAAACTGCATGACATAATAACTACAA 57.552 29.630 0.00 0.00 0.00 2.41
6764 11005 4.458397 CATAGGGAGAAACTGCATGACAT 58.542 43.478 0.00 0.00 0.00 3.06
6798 11039 4.346970 CTGCAGACAGTCGTTACTATGAG 58.653 47.826 8.42 0.00 39.22 2.90
6830 11071 3.056328 GGAAGGCGCACCAACTCC 61.056 66.667 10.83 1.04 39.06 3.85
6896 11137 1.047002 TTGAAATTGCTGGTGTGGGG 58.953 50.000 0.00 0.00 0.00 4.96
6924 11165 8.161699 AGATTGTTAAAACTACCAAACGTGAT 57.838 30.769 0.00 0.00 0.00 3.06
6985 11226 7.756395 ATGAACAGAGTGATTCAATGAAGTT 57.244 32.000 1.10 0.00 38.29 2.66
6987 11228 9.770503 CTTTATGAACAGAGTGATTCAATGAAG 57.229 33.333 1.10 0.00 38.29 3.02
6988 11229 9.288576 ACTTTATGAACAGAGTGATTCAATGAA 57.711 29.630 0.00 0.00 38.29 2.57
7065 11307 1.014564 GCGAGTTAGGGACTGCACAC 61.015 60.000 0.00 0.00 41.52 3.82
7083 11325 1.081442 GCACTTAACCACAAGCCGC 60.081 57.895 0.00 0.00 0.00 6.53
7125 11367 8.282592 TCAAGTGTCGATAAAAATTTCTGTCTG 58.717 33.333 0.00 0.00 0.00 3.51
7170 11412 6.656270 TGAGTGGTAGTAAATCAACTCGTAGA 59.344 38.462 0.00 0.00 0.00 2.59
7278 11520 8.884323 ACTTGGCATAGAAGATCCTAAATATGA 58.116 33.333 0.00 0.00 0.00 2.15
7284 11609 6.814954 AAGACTTGGCATAGAAGATCCTAA 57.185 37.500 0.00 0.00 0.00 2.69
7299 11632 4.216257 CCCTGACAAACATGTAAGACTTGG 59.784 45.833 0.00 2.91 0.00 3.61
7340 11673 9.812347 TGATATTTATTGGCATGGATCTAAAGT 57.188 29.630 0.00 0.00 0.00 2.66
7456 11792 5.350914 TGCAAAAACACAAATGGAAGTTCAG 59.649 36.000 5.01 0.00 0.00 3.02
7651 11987 8.841300 GGAAAAATAAATAACTAGGCAGGAGAG 58.159 37.037 0.00 0.00 0.00 3.20
7760 12096 8.733458 CAAATAATTCTCAGTCAGACAATTCCA 58.267 33.333 2.66 0.00 29.33 3.53
7824 12160 4.449068 CCCAGTGCTAAGCTAACATATTCG 59.551 45.833 0.00 0.00 0.00 3.34
7847 12183 1.741706 CACTCACATCTGATGCCAACC 59.258 52.381 17.24 0.00 0.00 3.77
7923 12259 1.687628 GTGTGAAACTCTCTCCGTCG 58.312 55.000 0.00 0.00 38.04 5.12
7944 12280 0.538287 GGTATGCAGATTCCAGGCCC 60.538 60.000 0.00 0.00 0.00 5.80
8014 12350 4.537433 GCCCGCCAGCACCTCTAG 62.537 72.222 0.00 0.00 0.00 2.43
8023 12359 3.121030 CAAGTCTTCGCCCGCCAG 61.121 66.667 0.00 0.00 0.00 4.85
8060 12396 3.055312 TCTCTGTGCTTCAAGATCTGCAT 60.055 43.478 8.52 0.00 37.76 3.96
8071 12407 0.373024 GCATTCGCTCTCTGTGCTTC 59.627 55.000 0.00 0.00 33.25 3.86
8173 12509 3.692257 ACCTTCAGGAGAACTCACATG 57.308 47.619 0.00 0.00 38.94 3.21
8202 12538 2.180017 GCCTTCGCCGTTACGAGA 59.820 61.111 6.24 2.29 44.00 4.04
8232 12568 3.189287 GTGAACTCACACCATTCACCATC 59.811 47.826 4.96 0.00 44.17 3.51
8346 12682 9.234827 CATCAATGGCAAATCTCAACCTATATA 57.765 33.333 0.00 0.00 0.00 0.86
8347 12683 7.727186 ACATCAATGGCAAATCTCAACCTATAT 59.273 33.333 0.00 0.00 0.00 0.86
8444 12780 2.281761 GGGCCACCAGTGTGTCAG 60.282 66.667 4.39 0.00 41.09 3.51
8448 12784 3.569210 TCAGGGGCCACCAGTGTG 61.569 66.667 0.00 0.00 43.89 3.82
8458 12794 0.543749 ATCTGCTACAAGTCAGGGGC 59.456 55.000 0.00 0.00 0.00 5.80
8513 12850 9.256228 ACTCTTTACTCATACACCTTGATCTAA 57.744 33.333 0.00 0.00 0.00 2.10
8641 13056 2.029110 CCACCCTGCCAATAAACAGTTG 60.029 50.000 0.00 0.00 31.76 3.16
8697 13112 6.907212 CGAGATCGCAAAGCTTTTAATTACAT 59.093 34.615 9.53 0.00 0.00 2.29
8723 13138 9.844790 TTTTACATGAGTTTTGCTATCATTCTG 57.155 29.630 0.00 0.00 31.38 3.02
8733 13148 5.831997 ACTCCTGTTTTACATGAGTTTTGC 58.168 37.500 10.64 0.00 46.92 3.68
8772 13187 7.942894 AGTTTAGGCACCCCTGATATATTTAAC 59.057 37.037 0.00 0.00 42.90 2.01
8773 13188 8.052621 AGTTTAGGCACCCCTGATATATTTAA 57.947 34.615 0.00 0.00 42.90 1.52
8774 13189 7.642094 AGTTTAGGCACCCCTGATATATTTA 57.358 36.000 0.00 0.00 42.90 1.40
8775 13190 6.530601 AGTTTAGGCACCCCTGATATATTT 57.469 37.500 0.00 0.00 42.90 1.40
8776 13191 6.126185 ACAAGTTTAGGCACCCCTGATATATT 60.126 38.462 0.00 0.00 42.90 1.28
8777 13192 5.372661 ACAAGTTTAGGCACCCCTGATATAT 59.627 40.000 0.00 0.00 42.90 0.86
8778 13193 4.724798 ACAAGTTTAGGCACCCCTGATATA 59.275 41.667 0.00 0.00 42.90 0.86
8779 13194 3.527665 ACAAGTTTAGGCACCCCTGATAT 59.472 43.478 0.00 0.00 42.90 1.63
8780 13195 2.916934 ACAAGTTTAGGCACCCCTGATA 59.083 45.455 0.00 0.00 42.90 2.15
8781 13196 1.710809 ACAAGTTTAGGCACCCCTGAT 59.289 47.619 0.00 0.00 42.90 2.90
8782 13197 1.073284 GACAAGTTTAGGCACCCCTGA 59.927 52.381 0.00 0.00 42.90 3.86
8783 13198 1.534729 GACAAGTTTAGGCACCCCTG 58.465 55.000 0.00 0.00 42.90 4.45
8784 13199 0.404426 GGACAAGTTTAGGCACCCCT 59.596 55.000 0.00 0.00 45.61 4.79
8785 13200 0.611062 GGGACAAGTTTAGGCACCCC 60.611 60.000 0.00 0.00 0.00 4.95
8786 13201 0.958876 CGGGACAAGTTTAGGCACCC 60.959 60.000 0.00 0.00 0.00 4.61
8787 13202 0.250597 ACGGGACAAGTTTAGGCACC 60.251 55.000 0.00 0.00 0.00 5.01
8788 13203 0.872388 CACGGGACAAGTTTAGGCAC 59.128 55.000 0.00 0.00 0.00 5.01
8789 13204 0.887387 GCACGGGACAAGTTTAGGCA 60.887 55.000 0.00 0.00 0.00 4.75
8790 13205 1.873863 GCACGGGACAAGTTTAGGC 59.126 57.895 0.00 0.00 0.00 3.93
8791 13206 1.908066 GCGCACGGGACAAGTTTAGG 61.908 60.000 0.30 0.00 0.00 2.69
8792 13207 1.495951 GCGCACGGGACAAGTTTAG 59.504 57.895 0.30 0.00 0.00 1.85
8793 13208 2.311701 CGCGCACGGGACAAGTTTA 61.312 57.895 8.75 0.00 34.97 2.01
8794 13209 3.645975 CGCGCACGGGACAAGTTT 61.646 61.111 8.75 0.00 34.97 2.66
8795 13210 4.903010 ACGCGCACGGGACAAGTT 62.903 61.111 14.32 0.00 46.04 2.66
8822 13237 2.282391 TGACACATGGGCCACTGC 60.282 61.111 9.28 4.57 0.00 4.40
8823 13238 1.676635 CCTGACACATGGGCCACTG 60.677 63.158 9.28 10.25 0.00 3.66
8824 13239 2.759114 CCTGACACATGGGCCACT 59.241 61.111 9.28 0.00 0.00 4.00
8825 13240 2.361610 CCCTGACACATGGGCCAC 60.362 66.667 9.28 0.00 36.61 5.01
8826 13241 3.660571 CCCCTGACACATGGGCCA 61.661 66.667 9.61 9.61 42.03 5.36
8829 13244 2.044650 CAGCCCCTGACACATGGG 60.045 66.667 7.56 7.56 41.35 4.00
8830 13245 2.753043 GCAGCCCCTGACACATGG 60.753 66.667 0.00 0.00 32.44 3.66
8831 13246 3.129502 CGCAGCCCCTGACACATG 61.130 66.667 0.00 0.00 32.44 3.21
8832 13247 3.640407 ACGCAGCCCCTGACACAT 61.640 61.111 0.00 0.00 32.44 3.21
8833 13248 4.624364 CACGCAGCCCCTGACACA 62.624 66.667 0.00 0.00 32.44 3.72
8852 13267 2.126346 GGCATTCAACGCCTGTGC 60.126 61.111 0.00 0.00 46.56 4.57
8859 13274 3.508840 GGAGCGGGGCATTCAACG 61.509 66.667 0.00 0.00 0.00 4.10
8860 13275 2.044946 AGGAGCGGGGCATTCAAC 60.045 61.111 0.00 0.00 0.00 3.18
8861 13276 2.045045 CAGGAGCGGGGCATTCAA 60.045 61.111 0.00 0.00 0.00 2.69
8862 13277 3.008517 TCAGGAGCGGGGCATTCA 61.009 61.111 0.00 0.00 0.00 2.57
8863 13278 2.203126 CTCAGGAGCGGGGCATTC 60.203 66.667 0.00 0.00 0.00 2.67
8864 13279 3.801997 CCTCAGGAGCGGGGCATT 61.802 66.667 0.00 0.00 0.00 3.56
8865 13280 4.804420 TCCTCAGGAGCGGGGCAT 62.804 66.667 0.00 0.00 0.00 4.40
8867 13282 1.696097 TAATTCCTCAGGAGCGGGGC 61.696 60.000 0.00 0.00 31.21 5.80
8868 13283 1.059913 ATAATTCCTCAGGAGCGGGG 58.940 55.000 0.00 0.00 31.21 5.73
8923 13338 7.597327 ACCCTATACTTCAGGACTTTCTCTAT 58.403 38.462 0.00 0.00 34.91 1.98
8927 13342 6.042208 GCATACCCTATACTTCAGGACTTTCT 59.958 42.308 0.00 0.00 34.91 2.52
8975 13390 3.744426 CCTCGTTTGAAACTCCACGTTAT 59.256 43.478 6.49 0.00 33.90 1.89
8976 13391 3.125316 CCTCGTTTGAAACTCCACGTTA 58.875 45.455 6.49 0.00 33.90 3.18
8979 13394 0.234884 GCCTCGTTTGAAACTCCACG 59.765 55.000 6.49 0.00 0.00 4.94
8980 13395 1.002792 GTGCCTCGTTTGAAACTCCAC 60.003 52.381 6.49 4.44 0.00 4.02
8981 13396 1.305201 GTGCCTCGTTTGAAACTCCA 58.695 50.000 6.49 0.00 0.00 3.86
8990 13412 2.147387 ACCAGGAGGTGCCTCGTTT 61.147 57.895 10.38 0.00 46.97 3.60
9032 13457 3.108144 CGGAAAGCAAAGTTCACTTGTG 58.892 45.455 0.00 0.00 36.12 3.33
9033 13458 3.013921 TCGGAAAGCAAAGTTCACTTGT 58.986 40.909 0.00 0.00 36.12 3.16
9036 13461 3.945285 TCTTTCGGAAAGCAAAGTTCACT 59.055 39.130 22.59 0.00 38.39 3.41
9037 13462 4.287238 TCTTTCGGAAAGCAAAGTTCAC 57.713 40.909 22.59 0.00 38.39 3.18
9150 13576 9.445786 CGTGTCATAAAACTAAACATGAACTTT 57.554 29.630 0.00 0.00 0.00 2.66
9151 13577 7.589954 GCGTGTCATAAAACTAAACATGAACTT 59.410 33.333 0.00 0.00 0.00 2.66
9152 13578 7.075741 GCGTGTCATAAAACTAAACATGAACT 58.924 34.615 0.00 0.00 0.00 3.01
9153 13579 6.853872 TGCGTGTCATAAAACTAAACATGAAC 59.146 34.615 0.00 0.00 0.00 3.18
9154 13580 6.960468 TGCGTGTCATAAAACTAAACATGAA 58.040 32.000 0.00 0.00 0.00 2.57
9155 13581 6.546972 TGCGTGTCATAAAACTAAACATGA 57.453 33.333 0.00 0.00 0.00 3.07
9156 13582 7.616103 TTTGCGTGTCATAAAACTAAACATG 57.384 32.000 0.00 0.00 0.00 3.21
9157 13583 8.810652 ATTTTGCGTGTCATAAAACTAAACAT 57.189 26.923 0.00 0.00 0.00 2.71
9158 13584 8.635877 AATTTTGCGTGTCATAAAACTAAACA 57.364 26.923 0.00 0.00 0.00 2.83
9159 13585 9.562752 GAAATTTTGCGTGTCATAAAACTAAAC 57.437 29.630 0.00 0.00 0.00 2.01
9160 13586 8.756864 GGAAATTTTGCGTGTCATAAAACTAAA 58.243 29.630 0.00 0.00 0.00 1.85
9161 13587 7.382759 GGGAAATTTTGCGTGTCATAAAACTAA 59.617 33.333 0.00 0.00 0.00 2.24
9162 13588 6.864165 GGGAAATTTTGCGTGTCATAAAACTA 59.136 34.615 0.00 0.00 0.00 2.24
9163 13589 5.694458 GGGAAATTTTGCGTGTCATAAAACT 59.306 36.000 0.00 0.00 0.00 2.66
9164 13590 5.463724 TGGGAAATTTTGCGTGTCATAAAAC 59.536 36.000 0.00 0.00 0.00 2.43
9165 13591 5.601662 TGGGAAATTTTGCGTGTCATAAAA 58.398 33.333 0.00 0.00 0.00 1.52
9166 13592 5.201713 TGGGAAATTTTGCGTGTCATAAA 57.798 34.783 0.00 0.00 0.00 1.40
9167 13593 4.855715 TGGGAAATTTTGCGTGTCATAA 57.144 36.364 0.00 0.00 0.00 1.90
9168 13594 6.707440 ATATGGGAAATTTTGCGTGTCATA 57.293 33.333 0.00 0.00 0.00 2.15
9169 13595 3.959535 ATGGGAAATTTTGCGTGTCAT 57.040 38.095 0.00 0.00 0.00 3.06
9170 13596 6.516739 TTATATGGGAAATTTTGCGTGTCA 57.483 33.333 0.00 0.00 0.00 3.58
9171 13597 7.820044 TTTTATATGGGAAATTTTGCGTGTC 57.180 32.000 0.00 0.00 0.00 3.67
9172 13598 8.785329 ATTTTTATATGGGAAATTTTGCGTGT 57.215 26.923 0.00 0.00 0.00 4.49
9174 13600 9.877178 TGTATTTTTATATGGGAAATTTTGCGT 57.123 25.926 0.00 0.00 0.00 5.24
9242 13668 9.710979 CAAAGTACACGATAACAAAAGAAGAAA 57.289 29.630 0.00 0.00 0.00 2.52
9243 13669 9.100554 TCAAAGTACACGATAACAAAAGAAGAA 57.899 29.630 0.00 0.00 0.00 2.52
9244 13670 8.651391 TCAAAGTACACGATAACAAAAGAAGA 57.349 30.769 0.00 0.00 0.00 2.87
9245 13671 9.370126 CTTCAAAGTACACGATAACAAAAGAAG 57.630 33.333 0.00 0.00 0.00 2.85
9246 13672 9.100554 TCTTCAAAGTACACGATAACAAAAGAA 57.899 29.630 0.00 0.00 0.00 2.52
9247 13673 8.651391 TCTTCAAAGTACACGATAACAAAAGA 57.349 30.769 0.00 0.00 0.00 2.52
9248 13674 8.548721 ACTCTTCAAAGTACACGATAACAAAAG 58.451 33.333 0.00 0.00 0.00 2.27
9249 13675 8.428186 ACTCTTCAAAGTACACGATAACAAAA 57.572 30.769 0.00 0.00 0.00 2.44
9250 13676 8.428186 AACTCTTCAAAGTACACGATAACAAA 57.572 30.769 0.00 0.00 0.00 2.83
9251 13677 9.531942 TTAACTCTTCAAAGTACACGATAACAA 57.468 29.630 0.00 0.00 0.00 2.83
9252 13678 9.531942 TTTAACTCTTCAAAGTACACGATAACA 57.468 29.630 0.00 0.00 0.00 2.41
9297 13723 9.451002 TGGGTTGAACTATTTAAATCGACATAA 57.549 29.630 3.39 0.00 0.00 1.90
9298 13724 9.621629 ATGGGTTGAACTATTTAAATCGACATA 57.378 29.630 3.39 0.00 0.00 2.29
9299 13725 7.931578 TGGGTTGAACTATTTAAATCGACAT 57.068 32.000 3.39 0.00 0.00 3.06
9300 13726 7.931578 ATGGGTTGAACTATTTAAATCGACA 57.068 32.000 3.39 2.75 0.00 4.35
9342 13768 8.686334 GGGTGCGGAATGAATATATATGAATTT 58.314 33.333 0.00 0.00 0.00 1.82
9343 13769 7.012327 CGGGTGCGGAATGAATATATATGAATT 59.988 37.037 0.00 0.00 0.00 2.17
9344 13770 6.483307 CGGGTGCGGAATGAATATATATGAAT 59.517 38.462 0.00 0.00 0.00 2.57
9345 13771 5.815222 CGGGTGCGGAATGAATATATATGAA 59.185 40.000 0.00 0.00 0.00 2.57
9346 13772 5.128008 TCGGGTGCGGAATGAATATATATGA 59.872 40.000 0.00 0.00 0.00 2.15
9347 13773 5.356426 TCGGGTGCGGAATGAATATATATG 58.644 41.667 0.00 0.00 0.00 1.78
9348 13774 5.607939 TCGGGTGCGGAATGAATATATAT 57.392 39.130 0.00 0.00 0.00 0.86
9349 13775 5.408880 TTCGGGTGCGGAATGAATATATA 57.591 39.130 0.00 0.00 0.00 0.86
9350 13776 3.973206 TCGGGTGCGGAATGAATATAT 57.027 42.857 0.00 0.00 0.00 0.86
9351 13777 3.659786 CTTCGGGTGCGGAATGAATATA 58.340 45.455 0.00 0.00 0.00 0.86
9352 13778 2.494059 CTTCGGGTGCGGAATGAATAT 58.506 47.619 0.00 0.00 0.00 1.28
9353 13779 1.948104 CTTCGGGTGCGGAATGAATA 58.052 50.000 0.00 0.00 0.00 1.75
9354 13780 1.376609 GCTTCGGGTGCGGAATGAAT 61.377 55.000 0.00 0.00 0.00 2.57
9355 13781 2.038269 GCTTCGGGTGCGGAATGAA 61.038 57.895 0.00 0.00 0.00 2.57
9356 13782 2.435938 GCTTCGGGTGCGGAATGA 60.436 61.111 0.00 0.00 0.00 2.57
9357 13783 1.861542 TTTGCTTCGGGTGCGGAATG 61.862 55.000 0.00 0.00 0.00 2.67
9358 13784 1.602323 TTTGCTTCGGGTGCGGAAT 60.602 52.632 0.00 0.00 0.00 3.01
9359 13785 2.203224 TTTGCTTCGGGTGCGGAA 60.203 55.556 0.00 0.00 0.00 4.30
9360 13786 2.975799 GTTTGCTTCGGGTGCGGA 60.976 61.111 0.00 0.00 0.00 5.54
9361 13787 3.283684 TGTTTGCTTCGGGTGCGG 61.284 61.111 0.00 0.00 0.00 5.69
9362 13788 2.051345 GTGTTTGCTTCGGGTGCG 60.051 61.111 0.00 0.00 0.00 5.34
9363 13789 0.031994 ATTGTGTTTGCTTCGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01
9364 13790 2.507339 AATTGTGTTTGCTTCGGGTG 57.493 45.000 0.00 0.00 0.00 4.61
9365 13791 4.142469 GCTATAATTGTGTTTGCTTCGGGT 60.142 41.667 0.00 0.00 0.00 5.28
9366 13792 4.351192 GCTATAATTGTGTTTGCTTCGGG 58.649 43.478 0.00 0.00 0.00 5.14
9367 13793 4.028383 CGCTATAATTGTGTTTGCTTCGG 58.972 43.478 0.00 0.00 0.00 4.30
9368 13794 4.647964 ACGCTATAATTGTGTTTGCTTCG 58.352 39.130 0.00 0.00 0.00 3.79
9369 13795 6.033513 GGAAACGCTATAATTGTGTTTGCTTC 59.966 38.462 16.20 4.32 45.76 3.86
9370 13796 5.861787 GGAAACGCTATAATTGTGTTTGCTT 59.138 36.000 16.20 0.00 45.76 3.91
9371 13797 5.399013 GGAAACGCTATAATTGTGTTTGCT 58.601 37.500 16.20 0.00 45.76 3.91
9372 13798 5.680479 GGAAACGCTATAATTGTGTTTGC 57.320 39.130 12.61 11.78 44.72 3.68
9373 13799 6.861055 ACTTGGAAACGCTATAATTGTGTTTG 59.139 34.615 12.61 3.62 44.72 2.93
9374 13800 6.977213 ACTTGGAAACGCTATAATTGTGTTT 58.023 32.000 8.75 8.75 46.51 2.83
9375 13801 6.569179 ACTTGGAAACGCTATAATTGTGTT 57.431 33.333 0.00 0.00 39.45 3.32
9376 13802 6.205853 TGAACTTGGAAACGCTATAATTGTGT 59.794 34.615 0.00 0.00 0.00 3.72
9377 13803 6.607689 TGAACTTGGAAACGCTATAATTGTG 58.392 36.000 0.00 0.00 0.00 3.33
9378 13804 6.811253 TGAACTTGGAAACGCTATAATTGT 57.189 33.333 0.00 0.00 0.00 2.71
9379 13805 7.250569 ACATGAACTTGGAAACGCTATAATTG 58.749 34.615 0.00 0.00 0.00 2.32
9380 13806 7.391148 ACATGAACTTGGAAACGCTATAATT 57.609 32.000 0.00 0.00 0.00 1.40
9381 13807 7.391148 AACATGAACTTGGAAACGCTATAAT 57.609 32.000 0.00 0.00 0.00 1.28
9382 13808 6.811253 AACATGAACTTGGAAACGCTATAA 57.189 33.333 0.00 0.00 0.00 0.98
9383 13809 6.811253 AAACATGAACTTGGAAACGCTATA 57.189 33.333 0.00 0.00 0.00 1.31
9384 13810 5.705609 AAACATGAACTTGGAAACGCTAT 57.294 34.783 0.00 0.00 0.00 2.97
9385 13811 5.761234 ACTAAACATGAACTTGGAAACGCTA 59.239 36.000 0.00 0.00 0.00 4.26
9386 13812 4.578928 ACTAAACATGAACTTGGAAACGCT 59.421 37.500 0.00 0.00 0.00 5.07
9387 13813 4.855531 ACTAAACATGAACTTGGAAACGC 58.144 39.130 0.00 0.00 0.00 4.84
9388 13814 7.749539 AAAACTAAACATGAACTTGGAAACG 57.250 32.000 0.00 0.00 0.00 3.60
9491 13918 8.428186 TCTTCAAAGTACACGATAACAAAAGT 57.572 30.769 0.00 0.00 0.00 2.66
9598 14031 1.098050 GCTTCTGGTGCGGAATGAAT 58.902 50.000 0.00 0.00 0.00 2.57
9606 14039 1.159713 TTGTGTCTGCTTCTGGTGCG 61.160 55.000 0.00 0.00 0.00 5.34
9619 14052 7.863375 AGAGTGAAGATACGCTATAATTGTGTC 59.137 37.037 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.