Multiple sequence alignment - TraesCS6D01G095000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G095000 chr6D 100.000 6140 0 0 812 6951 59332139 59338278 0.000000e+00 11339.0
1 TraesCS6D01G095000 chr6D 100.000 317 0 0 1 317 59331328 59331644 2.790000e-163 586.0
2 TraesCS6D01G095000 chr6D 87.387 222 14 7 6637 6846 417519139 417519358 6.970000e-60 243.0
3 TraesCS6D01G095000 chr6D 89.041 73 7 1 6766 6837 144876574 144876502 9.600000e-14 89.8
4 TraesCS6D01G095000 chr6A 97.339 4773 91 16 812 5561 75365345 75370104 0.000000e+00 8078.0
5 TraesCS6D01G095000 chr6A 93.402 1061 54 11 5483 6531 75370468 75371524 0.000000e+00 1557.0
6 TraesCS6D01G095000 chr6A 97.161 317 9 0 1 317 75364959 75365275 2.850000e-148 536.0
7 TraesCS6D01G095000 chr6A 96.970 165 4 1 5505 5668 75370299 75370463 6.870000e-70 276.0
8 TraesCS6D01G095000 chr6A 97.500 40 1 0 5454 5493 75370099 75370138 1.250000e-07 69.4
9 TraesCS6D01G095000 chr6B 96.181 4661 121 24 812 5448 132445419 132440792 0.000000e+00 7568.0
10 TraesCS6D01G095000 chr6B 90.621 853 56 16 5727 6563 132440620 132439776 0.000000e+00 1110.0
11 TraesCS6D01G095000 chr6B 93.354 316 19 2 1 315 132445800 132445486 3.800000e-127 466.0
12 TraesCS6D01G095000 chr7B 87.273 220 17 4 6637 6846 439648239 439648457 2.510000e-59 241.0
13 TraesCS6D01G095000 chr3B 86.099 223 20 3 6637 6848 486385190 486385412 5.420000e-56 230.0
14 TraesCS6D01G095000 chr5A 85.068 221 21 5 6637 6846 456625083 456624864 1.520000e-51 215.0
15 TraesCS6D01G095000 chr5A 83.258 221 25 8 6637 6846 52739463 52739682 7.120000e-45 193.0
16 TraesCS6D01G095000 chr5A 82.558 172 17 5 6637 6797 574317693 574317862 9.400000e-29 139.0
17 TraesCS6D01G095000 chr5A 94.444 54 3 0 5506 5559 232836249 232836196 4.470000e-12 84.2
18 TraesCS6D01G095000 chr4B 83.784 222 23 5 6637 6846 663072696 663072916 1.530000e-46 198.0
19 TraesCS6D01G095000 chr3A 85.465 172 13 5 6637 6797 594979345 594979175 1.200000e-37 169.0
20 TraesCS6D01G095000 chr2B 83.721 172 16 5 6637 6797 678399207 678399037 1.210000e-32 152.0
21 TraesCS6D01G095000 chr2B 100.000 50 0 0 5507 5556 745509316 745509267 7.420000e-15 93.5
22 TraesCS6D01G095000 chr2B 90.909 66 6 0 6575 6640 678399369 678399304 9.600000e-14 89.8
23 TraesCS6D01G095000 chr5D 98.148 54 1 0 5506 5559 195652599 195652546 2.060000e-15 95.3
24 TraesCS6D01G095000 chr5B 98.113 53 1 0 5507 5559 190122165 190122113 7.420000e-15 93.5
25 TraesCS6D01G095000 chr5B 100.000 35 0 0 6760 6794 656135877 656135911 1.620000e-06 65.8
26 TraesCS6D01G095000 chr1A 98.039 51 1 0 5506 5556 218481181 218481231 9.600000e-14 89.8
27 TraesCS6D01G095000 chr1A 100.000 31 0 0 6765 6795 506495707 506495737 2.710000e-04 58.4
28 TraesCS6D01G095000 chr2D 98.000 50 1 0 5506 5555 201394366 201394415 3.450000e-13 87.9
29 TraesCS6D01G095000 chr4D 96.875 32 0 1 1 32 445545436 445545406 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G095000 chr6D 59331328 59338278 6950 False 5962.50 11339 100.000000 1 6951 2 chr6D.!!$F2 6950
1 TraesCS6D01G095000 chr6A 75364959 75371524 6565 False 2103.28 8078 96.474400 1 6531 5 chr6A.!!$F1 6530
2 TraesCS6D01G095000 chr6B 132439776 132445800 6024 True 3048.00 7568 93.385333 1 6563 3 chr6B.!!$R1 6562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 937 0.178947 CCTAGATCTCTCGCCCCCTT 60.179 60.000 0.00 0.0 0.00 3.95 F
937 940 0.469144 AGATCTCTCGCCCCCTTCTC 60.469 60.000 0.00 0.0 0.00 2.87 F
1842 1854 0.745845 AGATGCGTGCTGTCATTCCC 60.746 55.000 0.00 0.0 0.00 3.97 F
2907 2919 0.677098 ATGACTGCTTGCAGCCTCTG 60.677 55.000 20.92 0.0 41.51 3.35 F
3066 3078 0.591170 CCAACGTTGACATGGTCACC 59.409 55.000 29.35 0.0 42.60 4.02 F
3249 3261 0.598419 CACTTGAGTCTGCTGCGTCA 60.598 55.000 0.00 0.0 0.00 4.35 F
4101 4113 3.820557 TGTAGCCAAAAAGAGAAGCTGT 58.179 40.909 0.00 0.0 35.03 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2079 0.040067 GGTTGCCAAACTCAGAAGCG 60.040 55.000 0.00 0.00 36.48 4.68 R
2361 2373 0.535780 GCATTGATCGGGCCATCTCA 60.536 55.000 4.39 0.00 0.00 3.27 R
2928 2940 0.618968 ACAAGAGAGATTCCGGGGCT 60.619 55.000 0.00 0.00 0.00 5.19 R
4099 4111 2.284190 TGTGCACAAGTGAAATCGACA 58.716 42.857 19.28 0.00 0.00 4.35 R
4226 4238 2.443449 TCCATCCCCTATCCTCTCTCA 58.557 52.381 0.00 0.00 0.00 3.27 R
4238 4250 5.584551 AGTATTCCAAGTAATCCATCCCC 57.415 43.478 0.00 0.00 0.00 4.81 R
6090 6633 0.250338 GGGTCCTGTCCACTGTTGAC 60.250 60.000 5.15 5.15 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.090173 GCTCTTAGGCAATTTATGTGTTTTGA 58.910 34.615 0.00 0.00 0.00 2.69
66 67 2.381618 TGAGGGGATGTTTGGATTTCCA 59.618 45.455 0.00 0.00 45.94 3.53
932 935 1.608046 CCCTAGATCTCTCGCCCCC 60.608 68.421 0.00 0.00 0.00 5.40
934 937 0.178947 CCTAGATCTCTCGCCCCCTT 60.179 60.000 0.00 0.00 0.00 3.95
935 938 1.253100 CTAGATCTCTCGCCCCCTTC 58.747 60.000 0.00 0.00 0.00 3.46
936 939 0.854218 TAGATCTCTCGCCCCCTTCT 59.146 55.000 0.00 0.00 0.00 2.85
937 940 0.469144 AGATCTCTCGCCCCCTTCTC 60.469 60.000 0.00 0.00 0.00 2.87
938 941 0.469144 GATCTCTCGCCCCCTTCTCT 60.469 60.000 0.00 0.00 0.00 3.10
939 942 0.469144 ATCTCTCGCCCCCTTCTCTC 60.469 60.000 0.00 0.00 0.00 3.20
940 943 2.440430 TCTCGCCCCCTTCTCTCG 60.440 66.667 0.00 0.00 0.00 4.04
941 944 4.214327 CTCGCCCCCTTCTCTCGC 62.214 72.222 0.00 0.00 0.00 5.03
945 948 3.839432 CCCCCTTCTCTCGCCGTC 61.839 72.222 0.00 0.00 0.00 4.79
946 949 4.194720 CCCCTTCTCTCGCCGTCG 62.195 72.222 0.00 0.00 0.00 5.12
987 999 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
988 1000 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
989 1001 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
990 1002 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
991 1003 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
992 1004 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
993 1005 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
994 1006 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
995 1007 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1005 1017 1.460305 AGGAGGAGGCGCCATGTAT 60.460 57.895 31.54 7.13 40.02 2.29
1359 1371 1.446272 GGAGACCTTCGGCAAGTCG 60.446 63.158 0.00 0.00 0.00 4.18
1842 1854 0.745845 AGATGCGTGCTGTCATTCCC 60.746 55.000 0.00 0.00 0.00 3.97
1995 2007 4.456280 TGGTGATACTGTTAGTGAGCTG 57.544 45.455 0.00 0.00 0.00 4.24
2067 2079 1.248486 GGTCAGGTTTCCTCTTTGCC 58.752 55.000 0.00 0.00 0.00 4.52
2184 2196 1.152546 GGGGTTCCAGCCAGTGTTT 60.153 57.895 0.00 0.00 37.54 2.83
2346 2358 2.592861 CTGCGCATCCTTAGGCCC 60.593 66.667 12.24 0.00 0.00 5.80
2553 2565 1.202698 ACTCACTCACTGGCAGTTTCC 60.203 52.381 19.43 0.00 0.00 3.13
2589 2601 2.262774 CTCTCATGCAGGTCCACCCC 62.263 65.000 0.00 0.00 36.42 4.95
2592 2604 1.000739 CATGCAGGTCCACCCCAAT 59.999 57.895 0.00 0.00 36.42 3.16
2595 2607 2.917897 GCAGGTCCACCCCAATGGA 61.918 63.158 0.00 0.00 46.92 3.41
2661 2673 3.619979 CGCCTGGGAAGAAAACTATCACT 60.620 47.826 0.00 0.00 0.00 3.41
2850 2862 0.944386 GTTTTCTCGCAGTTGGCTCA 59.056 50.000 0.00 0.00 41.67 4.26
2907 2919 0.677098 ATGACTGCTTGCAGCCTCTG 60.677 55.000 20.92 0.00 41.51 3.35
2928 2940 3.449377 TGAGTGTACAAAGTGTGTCCTCA 59.551 43.478 0.00 0.00 41.98 3.86
2931 2943 2.143925 GTACAAAGTGTGTCCTCAGCC 58.856 52.381 0.00 0.00 41.98 4.85
2976 2988 1.064003 TACAGGCATCAGTTGGTGGT 58.936 50.000 0.00 0.00 0.00 4.16
3042 3054 4.441792 GTTTGCAGAATGGTGTCCTTTTT 58.558 39.130 0.00 0.00 35.86 1.94
3051 3063 2.424246 TGGTGTCCTTTTTCGAACCAAC 59.576 45.455 0.00 0.00 34.85 3.77
3066 3078 0.591170 CCAACGTTGACATGGTCACC 59.409 55.000 29.35 0.00 42.60 4.02
3249 3261 0.598419 CACTTGAGTCTGCTGCGTCA 60.598 55.000 0.00 0.00 0.00 4.35
3840 3852 4.792068 AGTTTGTCAATGAAGGGAAGTCA 58.208 39.130 0.00 0.00 0.00 3.41
4079 4091 5.921962 TGCTCTCATCGCCTATGTATATT 57.078 39.130 0.00 0.00 36.89 1.28
4089 4101 6.526526 TCGCCTATGTATATTTGTAGCCAAA 58.473 36.000 0.00 0.00 44.27 3.28
4099 4111 7.709149 ATATTTGTAGCCAAAAAGAGAAGCT 57.291 32.000 0.00 0.00 43.43 3.74
4101 4113 3.820557 TGTAGCCAAAAAGAGAAGCTGT 58.179 40.909 0.00 0.00 35.03 4.40
4127 4139 7.748683 TCGATTTCACTTGTGCACAATATAAAC 59.251 33.333 31.17 18.73 35.02 2.01
4128 4140 7.750458 CGATTTCACTTGTGCACAATATAAACT 59.250 33.333 31.17 16.73 35.02 2.66
4226 4238 7.620888 AGATTGGATTAATTCATGTCTGGGTTT 59.379 33.333 10.03 0.00 0.00 3.27
4238 4250 4.026744 TGTCTGGGTTTGAGAGAGGATAG 58.973 47.826 0.00 0.00 0.00 2.08
4291 4305 7.503521 TGATAGATATGCATCGTCTATCTCC 57.496 40.000 34.08 22.84 45.57 3.71
4440 4474 7.606858 ATTATCTGTGACAGTTCTGACATTG 57.393 36.000 12.93 4.55 32.61 2.82
4447 4481 9.242477 CTGTGACAGTTCTGACATTGTATATAG 57.758 37.037 4.01 0.00 0.00 1.31
4527 4561 6.322201 TGTGTCATCTCTATTCTATGCAGTCA 59.678 38.462 0.00 0.00 0.00 3.41
5304 5338 7.564793 TGAGTATAATTATGTTCAGCAGGTGT 58.435 34.615 8.28 0.00 0.00 4.16
5314 5348 5.679601 TGTTCAGCAGGTGTATTATATGCA 58.320 37.500 0.00 0.00 39.34 3.96
5352 5387 7.824289 ACTATATGCAAGTGATAAACTGTGTGT 59.176 33.333 0.00 0.00 39.81 3.72
5371 5406 6.926826 TGTGTGTTTGTAGAACCACAGTATAG 59.073 38.462 3.09 0.00 32.07 1.31
5432 5467 2.820787 ACAAGACGAAAACCCAACACAA 59.179 40.909 0.00 0.00 0.00 3.33
5523 5868 6.515512 ACACAGCTATTTTCATATAGGGGT 57.484 37.500 0.00 0.00 0.00 4.95
5548 5893 4.740822 ACCCGGGTGCTCCAATGC 62.741 66.667 29.69 0.00 34.36 3.56
5595 6131 7.296628 AGGATAGAACATCTACTTGTGATCC 57.703 40.000 0.00 0.00 35.94 3.36
5616 6152 2.874701 CGCTGGCATTAGCTGTATTTCT 59.125 45.455 0.00 0.00 41.51 2.52
5690 6226 6.707608 TGCACCTTAGCTATATGTTCATTCTG 59.292 38.462 0.00 0.00 34.99 3.02
5848 6387 2.350293 CGATCTCTGTGAGCAGTATCCG 60.350 54.545 0.00 0.00 43.05 4.18
5983 6522 6.511444 GCTTAGCATGAATGAATCTGACTGTC 60.511 42.308 0.00 0.00 0.00 3.51
5992 6531 0.532573 ATCTGACTGTCGGAATGCGT 59.467 50.000 22.10 3.74 35.07 5.24
6022 6562 4.211374 AGTCCGCATCGCTGTAAAATATTC 59.789 41.667 0.00 0.00 0.00 1.75
6047 6587 1.754803 CCTCATCCAGTACAGCCGTTA 59.245 52.381 0.00 0.00 0.00 3.18
6053 6593 1.066430 CCAGTACAGCCGTTATGTGGT 60.066 52.381 0.00 0.00 32.02 4.16
6060 6603 3.243267 ACAGCCGTTATGTGGTGTTTTTC 60.243 43.478 0.00 0.00 40.01 2.29
6090 6633 6.387041 ACACAGCATTCCATAATTCATGAG 57.613 37.500 0.00 0.00 36.69 2.90
6262 6807 5.415701 ACAACTGTTATTTGGCCTGATGTAG 59.584 40.000 3.32 0.00 0.00 2.74
6286 6831 0.311790 ACTTGTTTGATGCAGTGGCG 59.688 50.000 0.00 0.00 45.35 5.69
6316 6864 6.946340 TCTGATGCATAGTAGAACTTTCCAA 58.054 36.000 0.00 0.00 0.00 3.53
6317 6865 7.044181 TCTGATGCATAGTAGAACTTTCCAAG 58.956 38.462 0.00 0.00 0.00 3.61
6332 6880 6.450545 ACTTTCCAAGTTACCGAGTTAGTAC 58.549 40.000 0.00 0.00 39.04 2.73
6418 6967 2.797156 CCTCTTGAGTTCACTGACAACG 59.203 50.000 0.00 0.00 0.00 4.10
6442 6991 2.751806 GCTCTGCCTAGCATTTTGACTT 59.248 45.455 2.69 0.00 42.30 3.01
6458 7008 7.621832 TTTTGACTTACTTGATTGAAATGCG 57.378 32.000 0.00 0.00 0.00 4.73
6461 7011 5.468409 TGACTTACTTGATTGAAATGCGTGA 59.532 36.000 0.00 0.00 0.00 4.35
6463 7013 7.333174 TGACTTACTTGATTGAAATGCGTGATA 59.667 33.333 0.00 0.00 0.00 2.15
6533 7084 8.511321 TGTACATAATTTTGAACTGTGACATCC 58.489 33.333 2.69 0.00 0.00 3.51
6534 7085 6.924111 ACATAATTTTGAACTGTGACATCCC 58.076 36.000 2.69 0.00 0.00 3.85
6535 7086 6.493115 ACATAATTTTGAACTGTGACATCCCA 59.507 34.615 2.69 0.00 0.00 4.37
6536 7087 5.867903 AATTTTGAACTGTGACATCCCAA 57.132 34.783 0.00 0.00 0.00 4.12
6537 7088 6.423776 AATTTTGAACTGTGACATCCCAAT 57.576 33.333 0.00 0.00 0.00 3.16
6538 7089 4.852134 TTTGAACTGTGACATCCCAATG 57.148 40.909 0.00 0.00 38.93 2.82
6560 7115 1.526986 CGTAGCGCGTCATCTTTTTGG 60.527 52.381 8.43 0.00 35.54 3.28
6563 7118 2.147958 AGCGCGTCATCTTTTTGGTAA 58.852 42.857 8.43 0.00 0.00 2.85
6564 7119 2.159627 AGCGCGTCATCTTTTTGGTAAG 59.840 45.455 8.43 0.00 0.00 2.34
6565 7120 2.727916 GCGCGTCATCTTTTTGGTAAGG 60.728 50.000 8.43 0.00 0.00 2.69
6566 7121 2.159572 CGCGTCATCTTTTTGGTAAGGG 60.160 50.000 0.00 0.00 0.00 3.95
6567 7122 3.078837 GCGTCATCTTTTTGGTAAGGGA 58.921 45.455 0.00 0.00 0.00 4.20
6568 7123 3.504520 GCGTCATCTTTTTGGTAAGGGAA 59.495 43.478 0.00 0.00 0.00 3.97
6569 7124 4.022676 GCGTCATCTTTTTGGTAAGGGAAA 60.023 41.667 0.00 0.00 0.00 3.13
6570 7125 5.458015 CGTCATCTTTTTGGTAAGGGAAAC 58.542 41.667 0.00 0.00 0.00 2.78
6571 7126 5.458015 GTCATCTTTTTGGTAAGGGAAACG 58.542 41.667 0.00 0.00 0.00 3.60
6572 7127 5.009310 GTCATCTTTTTGGTAAGGGAAACGT 59.991 40.000 0.00 0.00 0.00 3.99
6573 7128 5.595133 TCATCTTTTTGGTAAGGGAAACGTT 59.405 36.000 0.00 0.00 42.03 3.99
6574 7129 5.503662 TCTTTTTGGTAAGGGAAACGTTC 57.496 39.130 0.00 0.00 39.53 3.95
6575 7130 3.967203 TTTTGGTAAGGGAAACGTTCG 57.033 42.857 0.00 0.00 39.53 3.95
6576 7131 1.228533 TTGGTAAGGGAAACGTTCGC 58.771 50.000 0.00 4.01 42.38 4.70
6581 7136 3.733960 GGGAAACGTTCGCTGGGC 61.734 66.667 0.00 0.00 39.31 5.36
6582 7137 3.733960 GGAAACGTTCGCTGGGCC 61.734 66.667 0.00 0.00 0.00 5.80
6583 7138 4.084888 GAAACGTTCGCTGGGCCG 62.085 66.667 0.00 0.00 0.00 6.13
6612 7167 3.452786 CTCGCGAGGCTCCTCCAA 61.453 66.667 28.40 0.00 39.77 3.53
6613 7168 2.759973 TCGCGAGGCTCCTCCAAT 60.760 61.111 3.71 0.00 39.77 3.16
6614 7169 2.279784 CGCGAGGCTCCTCCAATC 60.280 66.667 9.32 0.00 39.77 2.67
6615 7170 2.279784 GCGAGGCTCCTCCAATCG 60.280 66.667 9.32 0.00 39.77 3.34
6616 7171 3.082579 GCGAGGCTCCTCCAATCGT 62.083 63.158 9.32 0.00 39.77 3.73
6617 7172 1.517832 CGAGGCTCCTCCAATCGTT 59.482 57.895 9.32 0.00 39.77 3.85
6618 7173 0.108138 CGAGGCTCCTCCAATCGTTT 60.108 55.000 9.32 0.00 39.77 3.60
6619 7174 1.676014 CGAGGCTCCTCCAATCGTTTT 60.676 52.381 9.32 0.00 39.77 2.43
6620 7175 2.010497 GAGGCTCCTCCAATCGTTTTC 58.990 52.381 2.15 0.00 37.11 2.29
6621 7176 1.630878 AGGCTCCTCCAATCGTTTTCT 59.369 47.619 0.00 0.00 37.29 2.52
6622 7177 2.040412 AGGCTCCTCCAATCGTTTTCTT 59.960 45.455 0.00 0.00 37.29 2.52
6623 7178 2.420372 GGCTCCTCCAATCGTTTTCTTC 59.580 50.000 0.00 0.00 34.01 2.87
6624 7179 3.339141 GCTCCTCCAATCGTTTTCTTCT 58.661 45.455 0.00 0.00 0.00 2.85
6625 7180 3.372514 GCTCCTCCAATCGTTTTCTTCTC 59.627 47.826 0.00 0.00 0.00 2.87
6626 7181 3.935828 CTCCTCCAATCGTTTTCTTCTCC 59.064 47.826 0.00 0.00 0.00 3.71
6627 7182 3.583086 TCCTCCAATCGTTTTCTTCTCCT 59.417 43.478 0.00 0.00 0.00 3.69
6628 7183 3.686726 CCTCCAATCGTTTTCTTCTCCTG 59.313 47.826 0.00 0.00 0.00 3.86
6629 7184 4.563580 CCTCCAATCGTTTTCTTCTCCTGA 60.564 45.833 0.00 0.00 0.00 3.86
6630 7185 4.569943 TCCAATCGTTTTCTTCTCCTGAG 58.430 43.478 0.00 0.00 0.00 3.35
6631 7186 3.686726 CCAATCGTTTTCTTCTCCTGAGG 59.313 47.826 0.00 0.00 0.00 3.86
6632 7187 4.319177 CAATCGTTTTCTTCTCCTGAGGT 58.681 43.478 0.00 0.00 0.00 3.85
6633 7188 3.386768 TCGTTTTCTTCTCCTGAGGTG 57.613 47.619 0.00 0.00 0.00 4.00
6634 7189 2.037251 TCGTTTTCTTCTCCTGAGGTGG 59.963 50.000 0.00 0.00 0.00 4.61
6635 7190 2.037251 CGTTTTCTTCTCCTGAGGTGGA 59.963 50.000 0.00 0.00 34.52 4.02
6636 7191 3.307059 CGTTTTCTTCTCCTGAGGTGGAT 60.307 47.826 0.00 0.00 35.30 3.41
6637 7192 4.657013 GTTTTCTTCTCCTGAGGTGGATT 58.343 43.478 0.00 0.00 35.30 3.01
6638 7193 4.559862 TTTCTTCTCCTGAGGTGGATTC 57.440 45.455 0.00 0.00 35.30 2.52
6639 7194 3.481559 TCTTCTCCTGAGGTGGATTCT 57.518 47.619 0.00 0.00 35.30 2.40
6640 7195 3.796111 TCTTCTCCTGAGGTGGATTCTT 58.204 45.455 0.00 0.00 35.30 2.52
6641 7196 3.772025 TCTTCTCCTGAGGTGGATTCTTC 59.228 47.826 0.00 0.00 35.30 2.87
6642 7197 2.472029 TCTCCTGAGGTGGATTCTTCC 58.528 52.381 0.00 0.00 42.94 3.46
6643 7198 1.488393 CTCCTGAGGTGGATTCTTCCC 59.512 57.143 0.00 0.00 41.83 3.97
6644 7199 1.203428 TCCTGAGGTGGATTCTTCCCA 60.203 52.381 0.00 0.00 41.83 4.37
6645 7200 1.635487 CCTGAGGTGGATTCTTCCCAA 59.365 52.381 0.00 0.00 41.83 4.12
6646 7201 2.619074 CCTGAGGTGGATTCTTCCCAAC 60.619 54.545 0.00 0.00 41.83 3.77
6649 7204 2.130272 GGTGGATTCTTCCCAACTCC 57.870 55.000 0.00 0.00 41.83 3.85
6650 7205 1.354368 GGTGGATTCTTCCCAACTCCA 59.646 52.381 0.00 0.00 41.83 3.86
6651 7206 2.437413 GTGGATTCTTCCCAACTCCAC 58.563 52.381 4.44 4.44 46.38 4.02
6652 7207 1.354368 TGGATTCTTCCCAACTCCACC 59.646 52.381 0.00 0.00 41.83 4.61
6653 7208 1.354368 GGATTCTTCCCAACTCCACCA 59.646 52.381 0.00 0.00 35.84 4.17
6654 7209 2.225017 GGATTCTTCCCAACTCCACCAA 60.225 50.000 0.00 0.00 35.84 3.67
6655 7210 2.656947 TTCTTCCCAACTCCACCAAG 57.343 50.000 0.00 0.00 0.00 3.61
6656 7211 0.110486 TCTTCCCAACTCCACCAAGC 59.890 55.000 0.00 0.00 0.00 4.01
6657 7212 0.178992 CTTCCCAACTCCACCAAGCA 60.179 55.000 0.00 0.00 0.00 3.91
6658 7213 0.178992 TTCCCAACTCCACCAAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
6659 7214 1.604593 CCCAACTCCACCAAGCAGG 60.605 63.158 0.00 0.00 45.67 4.85
6660 7215 2.270986 CCAACTCCACCAAGCAGGC 61.271 63.158 0.00 0.00 43.14 4.85
6661 7216 1.228367 CAACTCCACCAAGCAGGCT 60.228 57.895 0.00 0.00 43.14 4.58
6662 7217 1.073897 AACTCCACCAAGCAGGCTC 59.926 57.895 0.00 0.00 43.14 4.70
6663 7218 1.422161 AACTCCACCAAGCAGGCTCT 61.422 55.000 0.00 0.00 43.14 4.09
6664 7219 1.078567 CTCCACCAAGCAGGCTCTC 60.079 63.158 0.00 0.00 43.14 3.20
6665 7220 1.834856 CTCCACCAAGCAGGCTCTCA 61.835 60.000 0.00 0.00 43.14 3.27
6666 7221 1.203441 TCCACCAAGCAGGCTCTCAT 61.203 55.000 0.00 0.00 43.14 2.90
6667 7222 1.030488 CCACCAAGCAGGCTCTCATG 61.030 60.000 0.00 0.00 43.14 3.07
6668 7223 1.030488 CACCAAGCAGGCTCTCATGG 61.030 60.000 7.92 7.92 43.14 3.66
6669 7224 2.119655 CCAAGCAGGCTCTCATGGC 61.120 63.158 0.00 0.00 0.00 4.40
6670 7225 1.378119 CAAGCAGGCTCTCATGGCA 60.378 57.895 0.00 0.00 34.73 4.92
6671 7226 0.963856 CAAGCAGGCTCTCATGGCAA 60.964 55.000 0.00 0.00 34.73 4.52
6672 7227 0.964358 AAGCAGGCTCTCATGGCAAC 60.964 55.000 0.00 0.00 34.73 4.17
6673 7228 2.758089 GCAGGCTCTCATGGCAACG 61.758 63.158 0.00 0.00 42.51 4.10
6674 7229 2.437359 AGGCTCTCATGGCAACGC 60.437 61.111 0.00 0.00 42.51 4.84
6686 7241 3.423154 CAACGCCCCAAGCTCGTC 61.423 66.667 0.00 0.00 40.39 4.20
6687 7242 4.699522 AACGCCCCAAGCTCGTCC 62.700 66.667 0.00 0.00 40.39 4.79
6689 7244 4.697756 CGCCCCAAGCTCGTCCAA 62.698 66.667 0.00 0.00 40.39 3.53
6690 7245 2.282180 GCCCCAAGCTCGTCCAAA 60.282 61.111 0.00 0.00 38.99 3.28
6691 7246 2.626780 GCCCCAAGCTCGTCCAAAC 61.627 63.158 0.00 0.00 38.99 2.93
6692 7247 1.971695 CCCCAAGCTCGTCCAAACC 60.972 63.158 0.00 0.00 0.00 3.27
6693 7248 2.325082 CCCAAGCTCGTCCAAACCG 61.325 63.158 0.00 0.00 0.00 4.44
6694 7249 2.556287 CAAGCTCGTCCAAACCGC 59.444 61.111 0.00 0.00 0.00 5.68
6695 7250 2.668550 AAGCTCGTCCAAACCGCC 60.669 61.111 0.00 0.00 0.00 6.13
6696 7251 3.469863 AAGCTCGTCCAAACCGCCA 62.470 57.895 0.00 0.00 0.00 5.69
6697 7252 2.746277 GCTCGTCCAAACCGCCAT 60.746 61.111 0.00 0.00 0.00 4.40
6698 7253 2.332654 GCTCGTCCAAACCGCCATT 61.333 57.895 0.00 0.00 0.00 3.16
6699 7254 1.501741 CTCGTCCAAACCGCCATTG 59.498 57.895 0.00 0.00 0.00 2.82
6701 7256 2.261361 GTCCAAACCGCCATTGGC 59.739 61.111 18.10 18.10 45.63 4.52
6705 7260 1.373246 CAAACCGCCATTGGCTGTG 60.373 57.895 23.22 14.66 44.98 3.66
6706 7261 1.530419 AAACCGCCATTGGCTGTGA 60.530 52.632 23.22 0.00 44.98 3.58
6707 7262 1.805428 AAACCGCCATTGGCTGTGAC 61.805 55.000 23.22 0.00 44.98 3.67
6710 7265 2.964978 GCCATTGGCTGTGACCAC 59.035 61.111 20.66 0.00 46.69 4.16
6711 7266 2.639327 GCCATTGGCTGTGACCACC 61.639 63.158 20.66 0.00 46.69 4.61
6712 7267 2.334946 CCATTGGCTGTGACCACCG 61.335 63.158 0.00 0.00 40.19 4.94
6713 7268 2.672996 ATTGGCTGTGACCACCGC 60.673 61.111 7.84 7.84 40.19 5.68
6718 7273 4.363990 CTGTGACCACCGCGAGCT 62.364 66.667 8.23 0.00 0.00 4.09
6719 7274 2.986979 TGTGACCACCGCGAGCTA 60.987 61.111 8.23 0.00 0.00 3.32
6720 7275 2.506438 GTGACCACCGCGAGCTAC 60.506 66.667 8.23 0.00 0.00 3.58
6721 7276 2.675423 TGACCACCGCGAGCTACT 60.675 61.111 8.23 0.00 0.00 2.57
6722 7277 2.102553 GACCACCGCGAGCTACTC 59.897 66.667 8.23 0.00 0.00 2.59
6723 7278 3.412879 GACCACCGCGAGCTACTCC 62.413 68.421 8.23 0.00 0.00 3.85
6724 7279 3.449227 CCACCGCGAGCTACTCCA 61.449 66.667 8.23 0.00 0.00 3.86
6725 7280 2.786495 CCACCGCGAGCTACTCCAT 61.786 63.158 8.23 0.00 0.00 3.41
6726 7281 1.589993 CACCGCGAGCTACTCCATG 60.590 63.158 8.23 0.00 0.00 3.66
6727 7282 1.753078 ACCGCGAGCTACTCCATGA 60.753 57.895 8.23 0.00 0.00 3.07
6728 7283 1.299468 CCGCGAGCTACTCCATGAC 60.299 63.158 8.23 0.00 0.00 3.06
6729 7284 1.299468 CGCGAGCTACTCCATGACC 60.299 63.158 0.00 0.00 0.00 4.02
6730 7285 1.816537 GCGAGCTACTCCATGACCA 59.183 57.895 0.00 0.00 0.00 4.02
6731 7286 0.528684 GCGAGCTACTCCATGACCAC 60.529 60.000 0.00 0.00 0.00 4.16
6732 7287 0.817654 CGAGCTACTCCATGACCACA 59.182 55.000 0.00 0.00 0.00 4.17
6733 7288 1.202348 CGAGCTACTCCATGACCACAG 60.202 57.143 0.00 0.00 0.00 3.66
6734 7289 0.539051 AGCTACTCCATGACCACAGC 59.461 55.000 0.00 0.00 0.00 4.40
6735 7290 0.539051 GCTACTCCATGACCACAGCT 59.461 55.000 0.00 0.00 0.00 4.24
6736 7291 1.757118 GCTACTCCATGACCACAGCTA 59.243 52.381 0.00 0.00 0.00 3.32
6737 7292 2.482142 GCTACTCCATGACCACAGCTAC 60.482 54.545 0.00 0.00 0.00 3.58
6738 7293 1.944177 ACTCCATGACCACAGCTACT 58.056 50.000 0.00 0.00 0.00 2.57
6739 7294 2.260822 ACTCCATGACCACAGCTACTT 58.739 47.619 0.00 0.00 0.00 2.24
6740 7295 2.234908 ACTCCATGACCACAGCTACTTC 59.765 50.000 0.00 0.00 0.00 3.01
6741 7296 1.204704 TCCATGACCACAGCTACTTCG 59.795 52.381 0.00 0.00 0.00 3.79
6742 7297 1.066858 CCATGACCACAGCTACTTCGT 60.067 52.381 0.00 0.00 0.00 3.85
6743 7298 2.263077 CATGACCACAGCTACTTCGTC 58.737 52.381 0.00 0.00 0.00 4.20
6744 7299 0.601558 TGACCACAGCTACTTCGTCC 59.398 55.000 0.00 0.00 0.00 4.79
6745 7300 0.601558 GACCACAGCTACTTCGTCCA 59.398 55.000 0.00 0.00 0.00 4.02
6746 7301 1.204941 GACCACAGCTACTTCGTCCAT 59.795 52.381 0.00 0.00 0.00 3.41
6747 7302 1.204941 ACCACAGCTACTTCGTCCATC 59.795 52.381 0.00 0.00 0.00 3.51
6748 7303 1.478510 CCACAGCTACTTCGTCCATCT 59.521 52.381 0.00 0.00 0.00 2.90
6749 7304 2.480416 CCACAGCTACTTCGTCCATCTC 60.480 54.545 0.00 0.00 0.00 2.75
6750 7305 1.751924 ACAGCTACTTCGTCCATCTCC 59.248 52.381 0.00 0.00 0.00 3.71
6751 7306 1.067821 CAGCTACTTCGTCCATCTCCC 59.932 57.143 0.00 0.00 0.00 4.30
6752 7307 0.030908 GCTACTTCGTCCATCTCCCG 59.969 60.000 0.00 0.00 0.00 5.14
6753 7308 0.669077 CTACTTCGTCCATCTCCCGG 59.331 60.000 0.00 0.00 0.00 5.73
6754 7309 1.389609 TACTTCGTCCATCTCCCGGC 61.390 60.000 0.00 0.00 0.00 6.13
6755 7310 2.363795 TTCGTCCATCTCCCGGCT 60.364 61.111 0.00 0.00 0.00 5.52
6756 7311 2.356818 CTTCGTCCATCTCCCGGCTC 62.357 65.000 0.00 0.00 0.00 4.70
6757 7312 3.917760 CGTCCATCTCCCGGCTCC 61.918 72.222 0.00 0.00 0.00 4.70
6758 7313 3.551407 GTCCATCTCCCGGCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
6759 7314 3.767268 TCCATCTCCCGGCTCCCT 61.767 66.667 0.00 0.00 0.00 4.20
6760 7315 2.770048 CCATCTCCCGGCTCCCTT 60.770 66.667 0.00 0.00 0.00 3.95
6761 7316 2.378634 CCATCTCCCGGCTCCCTTT 61.379 63.158 0.00 0.00 0.00 3.11
6762 7317 1.609783 CATCTCCCGGCTCCCTTTT 59.390 57.895 0.00 0.00 0.00 2.27
6763 7318 0.034089 CATCTCCCGGCTCCCTTTTT 60.034 55.000 0.00 0.00 0.00 1.94
6779 7334 2.785713 TTTTTGCTACAACCGGCTTC 57.214 45.000 0.00 0.00 0.00 3.86
6780 7335 1.681538 TTTTGCTACAACCGGCTTCA 58.318 45.000 0.00 0.00 0.00 3.02
6781 7336 1.904287 TTTGCTACAACCGGCTTCAT 58.096 45.000 0.00 0.00 0.00 2.57
6782 7337 1.904287 TTGCTACAACCGGCTTCATT 58.096 45.000 0.00 0.00 0.00 2.57
6783 7338 1.904287 TGCTACAACCGGCTTCATTT 58.096 45.000 0.00 0.00 0.00 2.32
6784 7339 2.235016 TGCTACAACCGGCTTCATTTT 58.765 42.857 0.00 0.00 0.00 1.82
6785 7340 2.625790 TGCTACAACCGGCTTCATTTTT 59.374 40.909 0.00 0.00 0.00 1.94
6801 7356 2.785713 TTTTTGCTACAACCGGCTTC 57.214 45.000 0.00 0.00 0.00 3.86
6802 7357 1.975660 TTTTGCTACAACCGGCTTCT 58.024 45.000 0.00 0.00 0.00 2.85
6803 7358 1.975660 TTTGCTACAACCGGCTTCTT 58.024 45.000 0.00 0.00 0.00 2.52
6804 7359 1.975660 TTGCTACAACCGGCTTCTTT 58.024 45.000 0.00 0.00 0.00 2.52
6805 7360 1.975660 TGCTACAACCGGCTTCTTTT 58.024 45.000 0.00 0.00 0.00 2.27
6806 7361 2.303175 TGCTACAACCGGCTTCTTTTT 58.697 42.857 0.00 0.00 0.00 1.94
6825 7380 5.828299 TTTTTGCTATAAACCGAGGATGG 57.172 39.130 0.00 0.00 0.00 3.51
6826 7381 2.543777 TGCTATAAACCGAGGATGGC 57.456 50.000 0.00 0.00 0.00 4.40
6827 7382 1.270094 TGCTATAAACCGAGGATGGCG 60.270 52.381 0.00 0.00 30.28 5.69
6828 7383 1.000506 GCTATAAACCGAGGATGGCGA 59.999 52.381 0.00 0.00 0.00 5.54
6829 7384 2.927014 GCTATAAACCGAGGATGGCGAG 60.927 54.545 0.00 0.00 0.00 5.03
6830 7385 0.249911 ATAAACCGAGGATGGCGAGC 60.250 55.000 0.00 0.00 0.00 5.03
6831 7386 1.609635 TAAACCGAGGATGGCGAGCA 61.610 55.000 0.00 0.00 0.00 4.26
6832 7387 2.257409 AAACCGAGGATGGCGAGCAT 62.257 55.000 0.00 0.00 0.00 3.79
6833 7388 2.664185 CCGAGGATGGCGAGCATG 60.664 66.667 0.00 0.00 0.00 4.06
6834 7389 2.664185 CGAGGATGGCGAGCATGG 60.664 66.667 0.00 0.00 0.00 3.66
6835 7390 2.507944 GAGGATGGCGAGCATGGT 59.492 61.111 0.00 0.00 0.00 3.55
6836 7391 1.890979 GAGGATGGCGAGCATGGTG 60.891 63.158 0.00 0.00 0.00 4.17
6837 7392 2.190313 GGATGGCGAGCATGGTGA 59.810 61.111 0.00 0.00 0.00 4.02
6838 7393 2.182842 GGATGGCGAGCATGGTGAC 61.183 63.158 0.00 0.00 0.00 3.67
6839 7394 2.124570 ATGGCGAGCATGGTGACC 60.125 61.111 0.00 3.75 0.00 4.02
6840 7395 2.874648 GATGGCGAGCATGGTGACCA 62.875 60.000 6.84 6.84 38.19 4.02
6841 7396 3.127533 GGCGAGCATGGTGACCAC 61.128 66.667 6.40 0.00 35.80 4.16
6842 7397 3.490759 GCGAGCATGGTGACCACG 61.491 66.667 6.40 7.29 35.80 4.94
6843 7398 3.490759 CGAGCATGGTGACCACGC 61.491 66.667 15.80 15.80 43.62 5.34
6844 7399 2.358615 GAGCATGGTGACCACGCA 60.359 61.111 25.35 0.00 45.90 5.24
6845 7400 2.669569 AGCATGGTGACCACGCAC 60.670 61.111 25.35 6.18 45.90 5.34
6846 7401 4.088762 GCATGGTGACCACGCACG 62.089 66.667 18.77 0.12 42.74 5.34
6847 7402 3.422303 CATGGTGACCACGCACGG 61.422 66.667 6.40 0.00 39.66 4.94
6848 7403 3.936203 ATGGTGACCACGCACGGT 61.936 61.111 6.40 0.00 43.91 4.83
6849 7404 2.575893 ATGGTGACCACGCACGGTA 61.576 57.895 6.40 0.00 40.22 4.02
6850 7405 2.431942 GGTGACCACGCACGGTAG 60.432 66.667 0.00 0.00 40.22 3.18
6851 7406 3.110178 GTGACCACGCACGGTAGC 61.110 66.667 0.00 0.00 40.22 3.58
6852 7407 3.299977 TGACCACGCACGGTAGCT 61.300 61.111 0.00 0.00 40.22 3.32
6853 7408 2.809601 GACCACGCACGGTAGCTG 60.810 66.667 0.00 0.00 40.22 4.24
6854 7409 3.569049 GACCACGCACGGTAGCTGT 62.569 63.158 0.00 0.00 40.22 4.40
6855 7410 2.203972 GACCACGCACGGTAGCTGTA 62.204 60.000 0.00 0.00 40.22 2.74
6856 7411 1.080366 CCACGCACGGTAGCTGTAA 60.080 57.895 0.00 0.00 0.00 2.41
6857 7412 1.076533 CCACGCACGGTAGCTGTAAG 61.077 60.000 0.00 0.00 0.00 2.34
6858 7413 1.076533 CACGCACGGTAGCTGTAAGG 61.077 60.000 0.00 0.00 0.00 2.69
6860 7415 0.389426 CGCACGGTAGCTGTAAGGTT 60.389 55.000 0.00 0.00 46.63 3.50
6861 7416 1.076332 GCACGGTAGCTGTAAGGTTG 58.924 55.000 0.00 0.00 46.63 3.77
6862 7417 1.076332 CACGGTAGCTGTAAGGTTGC 58.924 55.000 0.00 0.00 46.63 4.17
6863 7418 0.682852 ACGGTAGCTGTAAGGTTGCA 59.317 50.000 0.00 0.00 46.63 4.08
6864 7419 1.278127 ACGGTAGCTGTAAGGTTGCAT 59.722 47.619 0.00 0.00 46.63 3.96
6865 7420 2.498481 ACGGTAGCTGTAAGGTTGCATA 59.502 45.455 0.00 0.00 46.63 3.14
6866 7421 2.864343 CGGTAGCTGTAAGGTTGCATAC 59.136 50.000 0.00 0.00 46.63 2.39
6867 7422 2.864343 GGTAGCTGTAAGGTTGCATACG 59.136 50.000 0.00 0.00 46.63 3.06
6868 7423 3.429822 GGTAGCTGTAAGGTTGCATACGA 60.430 47.826 0.00 0.00 46.63 3.43
6869 7424 2.893637 AGCTGTAAGGTTGCATACGAG 58.106 47.619 0.00 0.00 46.63 4.18
6870 7425 1.933853 GCTGTAAGGTTGCATACGAGG 59.066 52.381 0.00 0.00 0.00 4.63
6871 7426 2.677037 GCTGTAAGGTTGCATACGAGGT 60.677 50.000 0.00 0.00 0.00 3.85
6872 7427 3.596214 CTGTAAGGTTGCATACGAGGTT 58.404 45.455 0.00 0.00 0.00 3.50
6873 7428 4.000988 CTGTAAGGTTGCATACGAGGTTT 58.999 43.478 0.00 0.00 0.00 3.27
6874 7429 4.391155 TGTAAGGTTGCATACGAGGTTTT 58.609 39.130 0.00 0.00 0.00 2.43
6875 7430 4.822896 TGTAAGGTTGCATACGAGGTTTTT 59.177 37.500 0.00 0.00 0.00 1.94
6876 7431 4.499037 AAGGTTGCATACGAGGTTTTTC 57.501 40.909 0.00 0.00 0.00 2.29
6877 7432 2.817844 AGGTTGCATACGAGGTTTTTCC 59.182 45.455 0.00 0.00 0.00 3.13
6891 7446 2.342279 TTCCTGCTGGAACCGACG 59.658 61.111 20.15 0.00 46.57 5.12
6892 7447 2.204461 TTCCTGCTGGAACCGACGA 61.204 57.895 20.15 0.00 46.57 4.20
6893 7448 2.125912 CCTGCTGGAACCGACGAG 60.126 66.667 2.92 0.00 34.57 4.18
6894 7449 3.649277 CCTGCTGGAACCGACGAGG 62.649 68.421 2.92 0.00 40.29 4.63
6895 7450 2.599281 TGCTGGAACCGACGAGGA 60.599 61.111 8.56 0.00 45.00 3.71
6896 7451 1.949847 CTGCTGGAACCGACGAGGAT 61.950 60.000 8.56 0.00 45.00 3.24
6897 7452 1.218316 GCTGGAACCGACGAGGATT 59.782 57.895 8.56 0.28 45.00 3.01
6898 7453 0.806492 GCTGGAACCGACGAGGATTC 60.806 60.000 8.56 8.04 45.00 2.52
6899 7454 0.179108 CTGGAACCGACGAGGATTCC 60.179 60.000 18.60 18.60 45.00 3.01
6900 7455 0.613853 TGGAACCGACGAGGATTCCT 60.614 55.000 22.08 4.44 45.00 3.36
6901 7456 0.179108 GGAACCGACGAGGATTCCTG 60.179 60.000 10.74 5.33 45.00 3.86
6902 7457 0.806492 GAACCGACGAGGATTCCTGC 60.806 60.000 10.74 1.12 45.00 4.85
6903 7458 1.258445 AACCGACGAGGATTCCTGCT 61.258 55.000 10.74 0.00 45.00 4.24
6904 7459 0.395311 ACCGACGAGGATTCCTGCTA 60.395 55.000 10.74 0.00 45.00 3.49
6905 7460 0.030908 CCGACGAGGATTCCTGCTAC 59.969 60.000 10.74 0.00 45.00 3.58
6906 7461 0.738975 CGACGAGGATTCCTGCTACA 59.261 55.000 10.74 0.00 31.76 2.74
6907 7462 1.134367 CGACGAGGATTCCTGCTACAA 59.866 52.381 10.74 0.00 31.76 2.41
6908 7463 2.796383 CGACGAGGATTCCTGCTACAAG 60.796 54.545 10.74 0.00 31.76 3.16
6909 7464 1.134670 ACGAGGATTCCTGCTACAAGC 60.135 52.381 10.74 0.00 42.82 4.01
6919 7474 2.101700 GCTACAAGCACCATGGAGC 58.898 57.895 24.95 24.95 46.71 4.70
6920 7475 1.709147 GCTACAAGCACCATGGAGCG 61.709 60.000 25.68 16.30 44.30 5.03
6921 7476 1.078497 TACAAGCACCATGGAGCGG 60.078 57.895 25.68 23.11 36.83 5.52
6922 7477 1.836999 TACAAGCACCATGGAGCGGT 61.837 55.000 27.38 27.38 36.83 5.68
6923 7478 1.973281 CAAGCACCATGGAGCGGTT 60.973 57.895 25.68 17.59 36.83 4.44
6924 7479 1.228552 AAGCACCATGGAGCGGTTT 60.229 52.632 25.68 13.86 36.83 3.27
6925 7480 0.827507 AAGCACCATGGAGCGGTTTT 60.828 50.000 25.68 13.52 36.83 2.43
6926 7481 0.827507 AGCACCATGGAGCGGTTTTT 60.828 50.000 25.68 7.00 36.83 1.94
6940 7495 4.160928 TTTTTCCGAACACGGGGG 57.839 55.556 8.75 0.00 45.88 5.40
6941 7496 1.226822 TTTTTCCGAACACGGGGGT 59.773 52.632 8.75 0.00 45.88 4.95
6942 7497 1.102222 TTTTTCCGAACACGGGGGTG 61.102 55.000 8.75 0.00 45.88 4.61
6943 7498 2.962142 TTTTCCGAACACGGGGGTGG 62.962 60.000 8.75 0.00 45.88 4.61
6944 7499 4.938074 TCCGAACACGGGGGTGGA 62.938 66.667 8.75 0.00 45.88 4.02
6945 7500 4.388499 CCGAACACGGGGGTGGAG 62.388 72.222 0.00 0.00 42.66 3.86
6946 7501 3.307906 CGAACACGGGGGTGGAGA 61.308 66.667 0.00 0.00 0.00 3.71
6947 7502 2.656069 CGAACACGGGGGTGGAGAT 61.656 63.158 0.00 0.00 0.00 2.75
6948 7503 1.683441 GAACACGGGGGTGGAGATT 59.317 57.895 0.00 0.00 0.00 2.40
6949 7504 0.676782 GAACACGGGGGTGGAGATTG 60.677 60.000 0.00 0.00 0.00 2.67
6950 7505 1.423794 AACACGGGGGTGGAGATTGT 61.424 55.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.838637 TTGAAAGGGTGGACTTTGGT 57.161 45.000 0.00 0.00 40.55 3.67
208 209 3.521126 AGCATTGAGTCATTGACTACCCT 59.479 43.478 19.00 8.71 43.53 4.34
932 935 2.276743 CGACGACGGCGAGAGAAG 60.277 66.667 22.49 0.00 41.64 2.85
987 999 1.460305 ATACATGGCGCCTCCTCCT 60.460 57.895 29.70 5.00 35.26 3.69
988 1000 1.004440 GATACATGGCGCCTCCTCC 60.004 63.158 29.70 8.75 35.26 4.30
989 1001 0.037790 GAGATACATGGCGCCTCCTC 60.038 60.000 29.70 18.75 35.26 3.71
990 1002 0.470833 AGAGATACATGGCGCCTCCT 60.471 55.000 29.70 14.55 35.26 3.69
991 1003 1.067495 GTAGAGATACATGGCGCCTCC 60.067 57.143 29.70 10.13 0.00 4.30
992 1004 1.613925 TGTAGAGATACATGGCGCCTC 59.386 52.381 29.70 16.64 0.00 4.70
993 1005 1.615883 CTGTAGAGATACATGGCGCCT 59.384 52.381 29.70 10.43 0.00 5.52
994 1006 1.937108 GCTGTAGAGATACATGGCGCC 60.937 57.143 22.73 22.73 0.00 6.53
995 1007 1.423395 GCTGTAGAGATACATGGCGC 58.577 55.000 0.00 0.00 0.00 6.53
1825 1837 1.750399 GGGGAATGACAGCACGCAT 60.750 57.895 0.00 0.00 0.00 4.73
1995 2007 8.352942 GGTATGGTGTCAAAATATTTGATCCTC 58.647 37.037 20.00 14.13 0.00 3.71
2067 2079 0.040067 GGTTGCCAAACTCAGAAGCG 60.040 55.000 0.00 0.00 36.48 4.68
2259 2271 7.990541 TTCCTCATCGAATAAATTTGCAATG 57.009 32.000 0.00 0.00 0.00 2.82
2361 2373 0.535780 GCATTGATCGGGCCATCTCA 60.536 55.000 4.39 0.00 0.00 3.27
2589 2601 3.762288 CCCTGATATGCCTGATTCCATTG 59.238 47.826 0.00 0.00 0.00 2.82
2592 2604 2.641321 CTCCCTGATATGCCTGATTCCA 59.359 50.000 0.00 0.00 0.00 3.53
2595 2607 2.995746 TCCTCCCTGATATGCCTGATT 58.004 47.619 0.00 0.00 0.00 2.57
2661 2673 1.353022 AGCCGGTTTGATCCAACCTTA 59.647 47.619 22.53 0.00 0.00 2.69
2802 2814 2.269241 CTCCCTTCAGGAACCGGC 59.731 66.667 0.00 0.00 46.94 6.13
2850 2862 8.907829 AGAGTATCCTGATGGTGTTATCATAT 57.092 34.615 0.00 0.00 36.55 1.78
2907 2919 4.051922 CTGAGGACACACTTTGTACACTC 58.948 47.826 0.00 0.00 42.38 3.51
2928 2940 0.618968 ACAAGAGAGATTCCGGGGCT 60.619 55.000 0.00 0.00 0.00 5.19
2931 2943 3.618690 AAGAACAAGAGAGATTCCGGG 57.381 47.619 0.00 0.00 0.00 5.73
2976 2988 3.047857 TGGATAATCTGCACCATCCTCA 58.952 45.455 10.74 0.00 38.23 3.86
3042 3054 1.222300 CCATGTCAACGTTGGTTCGA 58.778 50.000 27.02 5.45 32.98 3.71
3066 3078 1.795525 CGTGTGTCTGATAGCTGACCG 60.796 57.143 14.41 7.88 40.91 4.79
3249 3261 2.902486 TGAGCACTGGTCAGAAGAGAAT 59.098 45.455 6.84 0.00 35.04 2.40
3840 3852 6.325919 TGTGTTTTGTGAAGAAGTTCAAGT 57.674 33.333 5.50 0.00 44.44 3.16
4079 4091 4.207165 ACAGCTTCTCTTTTTGGCTACAA 58.793 39.130 0.00 0.00 34.07 2.41
4089 4101 4.636249 AGTGAAATCGACAGCTTCTCTTT 58.364 39.130 0.00 0.00 0.00 2.52
4099 4111 2.284190 TGTGCACAAGTGAAATCGACA 58.716 42.857 19.28 0.00 0.00 4.35
4101 4113 5.878332 ATATTGTGCACAAGTGAAATCGA 57.122 34.783 33.44 10.56 39.47 3.59
4210 4222 5.246981 TCTCTCAAACCCAGACATGAATT 57.753 39.130 0.00 0.00 0.00 2.17
4226 4238 2.443449 TCCATCCCCTATCCTCTCTCA 58.557 52.381 0.00 0.00 0.00 3.27
4238 4250 5.584551 AGTATTCCAAGTAATCCATCCCC 57.415 43.478 0.00 0.00 0.00 4.81
4306 4320 5.841957 AACATTGCTCAAAGAAACAGACT 57.158 34.783 0.00 0.00 0.00 3.24
4351 4365 8.510243 AAATCCTTGTTTTGAAGCAGAAAAAT 57.490 26.923 0.00 0.00 0.00 1.82
4357 4371 5.594926 ACTGAAATCCTTGTTTTGAAGCAG 58.405 37.500 0.00 0.00 0.00 4.24
4360 4375 8.748380 GGATAACTGAAATCCTTGTTTTGAAG 57.252 34.615 5.99 0.00 39.93 3.02
4447 4481 8.494016 ACTAATGCATAAGAAGTCTGGTAAAC 57.506 34.615 0.00 0.00 0.00 2.01
4462 4496 7.071196 AGAGTACATCCCAGAAACTAATGCATA 59.929 37.037 0.00 0.00 0.00 3.14
4518 4552 7.774134 ACTTGCAATAATGAAATGACTGCATA 58.226 30.769 0.00 0.00 35.52 3.14
4527 4561 6.183360 CCCGTCTGTACTTGCAATAATGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
5170 5204 7.777910 CCCCACTTATCAAACCAAATGACTATA 59.222 37.037 0.00 0.00 0.00 1.31
5314 5348 7.071196 TCACTTGCATATAGTTGGGATTCTACT 59.929 37.037 0.00 0.00 35.69 2.57
5352 5387 9.599866 CAATGATCTATACTGTGGTTCTACAAA 57.400 33.333 0.00 0.00 0.00 2.83
5432 5467 3.015327 GAGCTGCTCTGAATGAAATGGT 58.985 45.455 21.93 0.00 0.00 3.55
5488 5582 7.282224 TGAAAATAGCTGTGTTGGGTATATGTC 59.718 37.037 0.00 0.00 0.00 3.06
5493 5587 9.507329 CTATATGAAAATAGCTGTGTTGGGTAT 57.493 33.333 0.00 0.00 0.00 2.73
5595 6131 2.874701 AGAAATACAGCTAATGCCAGCG 59.125 45.455 0.00 0.00 46.52 5.18
5616 6152 6.717084 TCATACACACAATTTATGGACCAACA 59.283 34.615 0.00 0.00 0.00 3.33
5848 6387 1.377994 CATATCAGCTGGGAGGGCC 59.622 63.158 15.13 0.00 0.00 5.80
5983 6522 0.716108 GACTTGACAGACGCATTCCG 59.284 55.000 0.00 0.00 44.21 4.30
5992 6531 1.446099 GCGATGCGGACTTGACAGA 60.446 57.895 0.00 0.00 0.00 3.41
6022 6562 2.036992 GGCTGTACTGGATGAGGAGATG 59.963 54.545 1.65 0.00 0.00 2.90
6047 6587 3.191581 TGTTGTGTCGAAAAACACCACAT 59.808 39.130 9.26 0.00 45.48 3.21
6053 6593 2.226674 TGCTGTGTTGTGTCGAAAAACA 59.773 40.909 5.07 5.07 0.00 2.83
6060 6603 0.943673 TGGAATGCTGTGTTGTGTCG 59.056 50.000 0.00 0.00 0.00 4.35
6090 6633 0.250338 GGGTCCTGTCCACTGTTGAC 60.250 60.000 5.15 5.15 0.00 3.18
6262 6807 3.047796 CACTGCATCAAACAAGTTCAGC 58.952 45.455 0.00 0.00 0.00 4.26
6286 6831 8.485976 AAGTTCTACTATGCATCAGAAAAGAC 57.514 34.615 15.87 7.96 0.00 3.01
6292 6837 6.544928 TGGAAAGTTCTACTATGCATCAGA 57.455 37.500 0.19 1.59 0.00 3.27
6316 6864 6.211515 CAACAACTGTACTAACTCGGTAACT 58.788 40.000 0.00 0.00 0.00 2.24
6317 6865 5.403466 CCAACAACTGTACTAACTCGGTAAC 59.597 44.000 0.00 0.00 0.00 2.50
6319 6867 4.584325 ACCAACAACTGTACTAACTCGGTA 59.416 41.667 0.00 0.00 0.00 4.02
6320 6868 3.385755 ACCAACAACTGTACTAACTCGGT 59.614 43.478 0.00 0.00 0.00 4.69
6321 6869 3.739300 CACCAACAACTGTACTAACTCGG 59.261 47.826 0.00 0.00 0.00 4.63
6322 6870 4.365723 ACACCAACAACTGTACTAACTCG 58.634 43.478 0.00 0.00 0.00 4.18
6326 6874 5.177326 ACGAAACACCAACAACTGTACTAA 58.823 37.500 0.00 0.00 0.00 2.24
6332 6880 3.366422 CCAAAACGAAACACCAACAACTG 59.634 43.478 0.00 0.00 0.00 3.16
6428 6977 9.897744 TTTCAATCAAGTAAGTCAAAATGCTAG 57.102 29.630 0.00 0.00 0.00 3.42
6434 6983 7.167302 CACGCATTTCAATCAAGTAAGTCAAAA 59.833 33.333 0.00 0.00 0.00 2.44
6438 6987 5.927030 TCACGCATTTCAATCAAGTAAGTC 58.073 37.500 0.00 0.00 0.00 3.01
6442 6991 9.487790 TCATATATCACGCATTTCAATCAAGTA 57.512 29.630 0.00 0.00 0.00 2.24
6513 7064 6.968263 TTGGGATGTCACAGTTCAAAATTA 57.032 33.333 0.00 0.00 0.00 1.40
6560 7115 0.794473 CCAGCGAACGTTTCCCTTAC 59.206 55.000 0.46 0.00 0.00 2.34
6563 7118 2.032071 CCCAGCGAACGTTTCCCT 59.968 61.111 0.46 0.00 0.00 4.20
6564 7119 3.733960 GCCCAGCGAACGTTTCCC 61.734 66.667 0.46 0.00 0.00 3.97
6565 7120 3.733960 GGCCCAGCGAACGTTTCC 61.734 66.667 0.46 0.00 0.00 3.13
6566 7121 4.084888 CGGCCCAGCGAACGTTTC 62.085 66.667 0.46 0.00 0.00 2.78
6595 7150 2.691674 GATTGGAGGAGCCTCGCGAG 62.692 65.000 29.06 29.06 43.59 5.03
6596 7151 2.759973 ATTGGAGGAGCCTCGCGA 60.760 61.111 9.26 9.26 43.59 5.87
6597 7152 2.279784 GATTGGAGGAGCCTCGCG 60.280 66.667 10.25 0.00 43.59 5.87
6598 7153 2.279784 CGATTGGAGGAGCCTCGC 60.280 66.667 10.25 4.59 43.59 5.03
6599 7154 0.108138 AAACGATTGGAGGAGCCTCG 60.108 55.000 10.25 2.36 43.59 4.63
6600 7155 2.010497 GAAAACGATTGGAGGAGCCTC 58.990 52.381 8.03 8.03 42.04 4.70
6601 7156 1.630878 AGAAAACGATTGGAGGAGCCT 59.369 47.619 0.00 0.00 37.63 4.58
6602 7157 2.115343 AGAAAACGATTGGAGGAGCC 57.885 50.000 0.00 0.00 37.10 4.70
6603 7158 3.339141 AGAAGAAAACGATTGGAGGAGC 58.661 45.455 0.00 0.00 0.00 4.70
6604 7159 3.935828 GGAGAAGAAAACGATTGGAGGAG 59.064 47.826 0.00 0.00 0.00 3.69
6605 7160 3.583086 AGGAGAAGAAAACGATTGGAGGA 59.417 43.478 0.00 0.00 0.00 3.71
6606 7161 3.686726 CAGGAGAAGAAAACGATTGGAGG 59.313 47.826 0.00 0.00 0.00 4.30
6607 7162 4.569943 TCAGGAGAAGAAAACGATTGGAG 58.430 43.478 0.00 0.00 0.00 3.86
6608 7163 4.563580 CCTCAGGAGAAGAAAACGATTGGA 60.564 45.833 0.00 0.00 0.00 3.53
6609 7164 3.686726 CCTCAGGAGAAGAAAACGATTGG 59.313 47.826 0.00 0.00 0.00 3.16
6610 7165 4.153117 CACCTCAGGAGAAGAAAACGATTG 59.847 45.833 0.00 0.00 0.00 2.67
6611 7166 4.319177 CACCTCAGGAGAAGAAAACGATT 58.681 43.478 0.00 0.00 0.00 3.34
6612 7167 3.307059 CCACCTCAGGAGAAGAAAACGAT 60.307 47.826 0.00 0.00 0.00 3.73
6613 7168 2.037251 CCACCTCAGGAGAAGAAAACGA 59.963 50.000 0.00 0.00 0.00 3.85
6614 7169 2.037251 TCCACCTCAGGAGAAGAAAACG 59.963 50.000 0.00 0.00 32.77 3.60
6615 7170 3.771577 TCCACCTCAGGAGAAGAAAAC 57.228 47.619 0.00 0.00 32.77 2.43
6616 7171 4.599241 AGAATCCACCTCAGGAGAAGAAAA 59.401 41.667 0.00 0.00 41.90 2.29
6617 7172 4.171234 AGAATCCACCTCAGGAGAAGAAA 58.829 43.478 0.00 0.00 41.90 2.52
6618 7173 3.796111 AGAATCCACCTCAGGAGAAGAA 58.204 45.455 0.00 0.00 41.90 2.52
6619 7174 3.481559 AGAATCCACCTCAGGAGAAGA 57.518 47.619 0.00 0.00 41.90 2.87
6620 7175 3.118445 GGAAGAATCCACCTCAGGAGAAG 60.118 52.174 0.00 0.00 45.79 2.85
6621 7176 2.840651 GGAAGAATCCACCTCAGGAGAA 59.159 50.000 0.00 0.00 45.79 2.87
6622 7177 2.472029 GGAAGAATCCACCTCAGGAGA 58.528 52.381 0.00 0.00 45.79 3.71
6623 7178 2.998316 GGAAGAATCCACCTCAGGAG 57.002 55.000 0.00 0.00 45.79 3.69
6633 7188 1.354368 TGGTGGAGTTGGGAAGAATCC 59.646 52.381 0.00 0.00 45.77 3.01
6634 7189 2.879103 TGGTGGAGTTGGGAAGAATC 57.121 50.000 0.00 0.00 0.00 2.52
6635 7190 2.819348 GCTTGGTGGAGTTGGGAAGAAT 60.819 50.000 0.00 0.00 0.00 2.40
6636 7191 1.478654 GCTTGGTGGAGTTGGGAAGAA 60.479 52.381 0.00 0.00 0.00 2.52
6637 7192 0.110486 GCTTGGTGGAGTTGGGAAGA 59.890 55.000 0.00 0.00 0.00 2.87
6638 7193 0.178992 TGCTTGGTGGAGTTGGGAAG 60.179 55.000 0.00 0.00 0.00 3.46
6639 7194 0.178992 CTGCTTGGTGGAGTTGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
6640 7195 1.455849 CTGCTTGGTGGAGTTGGGA 59.544 57.895 0.00 0.00 0.00 4.37
6641 7196 1.604593 CCTGCTTGGTGGAGTTGGG 60.605 63.158 0.00 0.00 31.70 4.12
6642 7197 2.270986 GCCTGCTTGGTGGAGTTGG 61.271 63.158 0.00 0.00 38.35 3.77
6643 7198 1.228367 AGCCTGCTTGGTGGAGTTG 60.228 57.895 0.00 0.00 38.35 3.16
6644 7199 1.073897 GAGCCTGCTTGGTGGAGTT 59.926 57.895 0.00 0.00 38.35 3.01
6645 7200 1.835927 GAGAGCCTGCTTGGTGGAGT 61.836 60.000 0.00 0.00 38.35 3.85
6646 7201 1.078567 GAGAGCCTGCTTGGTGGAG 60.079 63.158 0.00 0.00 38.35 3.86
6647 7202 1.203441 ATGAGAGCCTGCTTGGTGGA 61.203 55.000 0.00 0.00 38.35 4.02
6648 7203 1.030488 CATGAGAGCCTGCTTGGTGG 61.030 60.000 0.00 0.00 38.35 4.61
6649 7204 1.030488 CCATGAGAGCCTGCTTGGTG 61.030 60.000 0.00 0.00 38.35 4.17
6650 7205 1.302285 CCATGAGAGCCTGCTTGGT 59.698 57.895 0.00 0.00 38.35 3.67
6651 7206 2.119655 GCCATGAGAGCCTGCTTGG 61.120 63.158 0.00 3.69 39.35 3.61
6652 7207 0.963856 TTGCCATGAGAGCCTGCTTG 60.964 55.000 0.00 0.00 0.00 4.01
6653 7208 0.964358 GTTGCCATGAGAGCCTGCTT 60.964 55.000 0.00 0.00 0.00 3.91
6654 7209 1.378250 GTTGCCATGAGAGCCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
6655 7210 2.758089 CGTTGCCATGAGAGCCTGC 61.758 63.158 0.00 0.00 0.00 4.85
6656 7211 2.758089 GCGTTGCCATGAGAGCCTG 61.758 63.158 0.00 0.00 0.00 4.85
6657 7212 2.437359 GCGTTGCCATGAGAGCCT 60.437 61.111 0.00 0.00 0.00 4.58
6673 7228 2.282180 TTTGGACGAGCTTGGGGC 60.282 61.111 5.79 0.00 42.19 5.80
6674 7229 1.971695 GGTTTGGACGAGCTTGGGG 60.972 63.158 5.79 0.00 0.00 4.96
6675 7230 2.325082 CGGTTTGGACGAGCTTGGG 61.325 63.158 5.79 0.00 0.00 4.12
6676 7231 2.966309 GCGGTTTGGACGAGCTTGG 61.966 63.158 5.79 0.00 0.00 3.61
6677 7232 2.556287 GCGGTTTGGACGAGCTTG 59.444 61.111 0.00 0.00 0.00 4.01
6678 7233 2.668550 GGCGGTTTGGACGAGCTT 60.669 61.111 0.00 0.00 32.81 3.74
6679 7234 2.748058 AATGGCGGTTTGGACGAGCT 62.748 55.000 0.00 0.00 32.81 4.09
6680 7235 2.332654 AATGGCGGTTTGGACGAGC 61.333 57.895 0.00 0.00 0.00 5.03
6681 7236 1.501741 CAATGGCGGTTTGGACGAG 59.498 57.895 0.00 0.00 0.00 4.18
6682 7237 1.969064 CCAATGGCGGTTTGGACGA 60.969 57.895 7.66 0.00 45.35 4.20
6683 7238 2.566010 CCAATGGCGGTTTGGACG 59.434 61.111 7.66 0.00 45.35 4.79
6684 7239 2.261361 GCCAATGGCGGTTTGGAC 59.739 61.111 9.14 5.51 45.35 4.02
6694 7249 2.334946 CGGTGGTCACAGCCAATGG 61.335 63.158 0.00 0.00 41.98 3.16
6695 7250 2.981560 GCGGTGGTCACAGCCAATG 61.982 63.158 13.75 0.00 44.78 2.82
6696 7251 2.672996 GCGGTGGTCACAGCCAAT 60.673 61.111 13.75 0.00 44.78 3.16
6701 7256 2.989881 TAGCTCGCGGTGGTCACAG 61.990 63.158 6.13 0.17 0.00 3.66
6702 7257 2.986979 TAGCTCGCGGTGGTCACA 60.987 61.111 6.13 0.00 0.00 3.58
6703 7258 2.506438 GTAGCTCGCGGTGGTCAC 60.506 66.667 6.13 1.92 0.00 3.67
6704 7259 2.675423 AGTAGCTCGCGGTGGTCA 60.675 61.111 6.13 0.00 0.00 4.02
6705 7260 2.102553 GAGTAGCTCGCGGTGGTC 59.897 66.667 6.13 0.56 0.00 4.02
6706 7261 3.450115 GGAGTAGCTCGCGGTGGT 61.450 66.667 6.13 8.17 0.00 4.16
6707 7262 2.786495 ATGGAGTAGCTCGCGGTGG 61.786 63.158 6.13 0.00 0.00 4.61
6708 7263 1.589993 CATGGAGTAGCTCGCGGTG 60.590 63.158 6.13 0.07 0.00 4.94
6709 7264 1.753078 TCATGGAGTAGCTCGCGGT 60.753 57.895 6.13 0.00 0.00 5.68
6710 7265 1.299468 GTCATGGAGTAGCTCGCGG 60.299 63.158 6.13 0.00 0.00 6.46
6711 7266 1.299468 GGTCATGGAGTAGCTCGCG 60.299 63.158 0.00 0.00 0.00 5.87
6712 7267 0.528684 GTGGTCATGGAGTAGCTCGC 60.529 60.000 0.00 0.00 0.00 5.03
6713 7268 0.817654 TGTGGTCATGGAGTAGCTCG 59.182 55.000 0.00 0.00 0.00 5.03
6714 7269 1.472376 GCTGTGGTCATGGAGTAGCTC 60.472 57.143 0.00 0.00 0.00 4.09
6715 7270 0.539051 GCTGTGGTCATGGAGTAGCT 59.461 55.000 0.00 0.00 0.00 3.32
6716 7271 0.539051 AGCTGTGGTCATGGAGTAGC 59.461 55.000 0.00 0.00 0.00 3.58
6717 7272 3.027412 AGTAGCTGTGGTCATGGAGTAG 58.973 50.000 0.00 0.00 0.00 2.57
6718 7273 3.101643 AGTAGCTGTGGTCATGGAGTA 57.898 47.619 0.00 0.00 0.00 2.59
6719 7274 1.944177 AGTAGCTGTGGTCATGGAGT 58.056 50.000 0.00 0.00 0.00 3.85
6720 7275 2.736719 CGAAGTAGCTGTGGTCATGGAG 60.737 54.545 0.00 0.00 0.00 3.86
6721 7276 1.204704 CGAAGTAGCTGTGGTCATGGA 59.795 52.381 0.00 0.00 0.00 3.41
6722 7277 1.066858 ACGAAGTAGCTGTGGTCATGG 60.067 52.381 0.00 0.00 41.94 3.66
6723 7278 2.370281 ACGAAGTAGCTGTGGTCATG 57.630 50.000 0.00 0.00 41.94 3.07
6737 7292 2.107141 GCCGGGAGATGGACGAAG 59.893 66.667 2.18 0.00 0.00 3.79
6738 7293 2.363795 AGCCGGGAGATGGACGAA 60.364 61.111 2.18 0.00 0.00 3.85
6739 7294 2.833582 GAGCCGGGAGATGGACGA 60.834 66.667 2.18 0.00 0.00 4.20
6740 7295 3.917760 GGAGCCGGGAGATGGACG 61.918 72.222 2.18 0.00 0.00 4.79
6741 7296 3.551407 GGGAGCCGGGAGATGGAC 61.551 72.222 2.18 0.00 0.00 4.02
6742 7297 2.840203 AAAGGGAGCCGGGAGATGGA 62.840 60.000 2.18 0.00 0.00 3.41
6743 7298 1.926426 AAAAGGGAGCCGGGAGATGG 61.926 60.000 2.18 0.00 0.00 3.51
6744 7299 0.034089 AAAAAGGGAGCCGGGAGATG 60.034 55.000 2.18 0.00 0.00 2.90
6745 7300 2.398919 AAAAAGGGAGCCGGGAGAT 58.601 52.632 2.18 0.00 0.00 2.75
6746 7301 3.916184 AAAAAGGGAGCCGGGAGA 58.084 55.556 2.18 0.00 0.00 3.71
6760 7315 2.025155 TGAAGCCGGTTGTAGCAAAAA 58.975 42.857 1.90 0.00 0.00 1.94
6761 7316 1.681538 TGAAGCCGGTTGTAGCAAAA 58.318 45.000 1.90 0.00 0.00 2.44
6762 7317 1.904287 ATGAAGCCGGTTGTAGCAAA 58.096 45.000 1.90 0.00 0.00 3.68
6763 7318 1.904287 AATGAAGCCGGTTGTAGCAA 58.096 45.000 1.90 0.00 0.00 3.91
6764 7319 1.904287 AAATGAAGCCGGTTGTAGCA 58.096 45.000 1.90 0.00 0.00 3.49
6765 7320 3.297830 AAAAATGAAGCCGGTTGTAGC 57.702 42.857 1.90 0.00 0.00 3.58
6782 7337 2.303175 AGAAGCCGGTTGTAGCAAAAA 58.697 42.857 1.90 0.00 0.00 1.94
6783 7338 1.975660 AGAAGCCGGTTGTAGCAAAA 58.024 45.000 1.90 0.00 0.00 2.44
6784 7339 1.975660 AAGAAGCCGGTTGTAGCAAA 58.024 45.000 1.90 0.00 0.00 3.68
6785 7340 1.975660 AAAGAAGCCGGTTGTAGCAA 58.024 45.000 1.90 0.00 0.00 3.91
6786 7341 1.975660 AAAAGAAGCCGGTTGTAGCA 58.024 45.000 1.90 0.00 0.00 3.49
6803 7358 4.097286 GCCATCCTCGGTTTATAGCAAAAA 59.903 41.667 0.00 0.00 0.00 1.94
6804 7359 3.630312 GCCATCCTCGGTTTATAGCAAAA 59.370 43.478 0.00 0.00 0.00 2.44
6805 7360 3.211045 GCCATCCTCGGTTTATAGCAAA 58.789 45.455 0.00 0.00 0.00 3.68
6806 7361 2.805295 CGCCATCCTCGGTTTATAGCAA 60.805 50.000 0.00 0.00 0.00 3.91
6807 7362 1.270094 CGCCATCCTCGGTTTATAGCA 60.270 52.381 0.00 0.00 0.00 3.49
6808 7363 1.000506 TCGCCATCCTCGGTTTATAGC 59.999 52.381 0.00 0.00 0.00 2.97
6809 7364 2.927014 GCTCGCCATCCTCGGTTTATAG 60.927 54.545 0.00 0.00 0.00 1.31
6810 7365 1.000506 GCTCGCCATCCTCGGTTTATA 59.999 52.381 0.00 0.00 0.00 0.98
6811 7366 0.249911 GCTCGCCATCCTCGGTTTAT 60.250 55.000 0.00 0.00 0.00 1.40
6812 7367 1.143183 GCTCGCCATCCTCGGTTTA 59.857 57.895 0.00 0.00 0.00 2.01
6813 7368 2.125106 GCTCGCCATCCTCGGTTT 60.125 61.111 0.00 0.00 0.00 3.27
6814 7369 2.735772 ATGCTCGCCATCCTCGGTT 61.736 57.895 0.00 0.00 0.00 4.44
6815 7370 3.157252 ATGCTCGCCATCCTCGGT 61.157 61.111 0.00 0.00 0.00 4.69
6816 7371 2.664185 CATGCTCGCCATCCTCGG 60.664 66.667 0.00 0.00 29.71 4.63
6817 7372 2.664185 CCATGCTCGCCATCCTCG 60.664 66.667 0.00 0.00 29.71 4.63
6818 7373 1.890979 CACCATGCTCGCCATCCTC 60.891 63.158 0.00 0.00 29.71 3.71
6819 7374 2.191375 CACCATGCTCGCCATCCT 59.809 61.111 0.00 0.00 29.71 3.24
6820 7375 2.182842 GTCACCATGCTCGCCATCC 61.183 63.158 0.00 0.00 29.71 3.51
6821 7376 2.182842 GGTCACCATGCTCGCCATC 61.183 63.158 0.00 0.00 29.71 3.51
6822 7377 2.124570 GGTCACCATGCTCGCCAT 60.125 61.111 0.00 0.00 33.39 4.40
6823 7378 3.635191 TGGTCACCATGCTCGCCA 61.635 61.111 0.00 0.00 0.00 5.69
6824 7379 3.127533 GTGGTCACCATGCTCGCC 61.128 66.667 0.00 0.00 35.28 5.54
6825 7380 3.490759 CGTGGTCACCATGCTCGC 61.491 66.667 2.15 0.00 35.28 5.03
6830 7385 2.773397 TACCGTGCGTGGTCACCATG 62.773 60.000 12.22 12.22 42.62 3.66
6831 7386 2.501223 CTACCGTGCGTGGTCACCAT 62.501 60.000 0.00 0.00 42.62 3.55
6832 7387 3.215597 CTACCGTGCGTGGTCACCA 62.216 63.158 2.52 0.00 42.62 4.17
6833 7388 2.431942 CTACCGTGCGTGGTCACC 60.432 66.667 2.52 0.00 42.62 4.02
6834 7389 3.110178 GCTACCGTGCGTGGTCAC 61.110 66.667 2.52 0.00 42.62 3.67
6835 7390 3.299977 AGCTACCGTGCGTGGTCA 61.300 61.111 2.52 0.00 42.62 4.02
6836 7391 2.203972 TACAGCTACCGTGCGTGGTC 62.204 60.000 2.52 0.00 42.62 4.02
6837 7392 1.808531 TTACAGCTACCGTGCGTGGT 61.809 55.000 4.95 4.95 46.26 4.16
6838 7393 1.076533 CTTACAGCTACCGTGCGTGG 61.077 60.000 0.00 0.00 38.13 4.94
6839 7394 1.076533 CCTTACAGCTACCGTGCGTG 61.077 60.000 0.00 0.00 38.13 5.34
6840 7395 1.214589 CCTTACAGCTACCGTGCGT 59.785 57.895 0.00 0.00 38.13 5.24
6841 7396 0.389426 AACCTTACAGCTACCGTGCG 60.389 55.000 0.00 0.00 38.13 5.34
6842 7397 1.076332 CAACCTTACAGCTACCGTGC 58.924 55.000 0.00 0.00 0.00 5.34
6843 7398 1.076332 GCAACCTTACAGCTACCGTG 58.924 55.000 0.00 0.00 0.00 4.94
6844 7399 0.682852 TGCAACCTTACAGCTACCGT 59.317 50.000 0.00 0.00 0.00 4.83
6845 7400 2.024176 ATGCAACCTTACAGCTACCG 57.976 50.000 0.00 0.00 0.00 4.02
6846 7401 2.864343 CGTATGCAACCTTACAGCTACC 59.136 50.000 0.00 0.00 0.00 3.18
6847 7402 3.777478 TCGTATGCAACCTTACAGCTAC 58.223 45.455 0.00 0.00 0.00 3.58
6848 7403 3.181479 CCTCGTATGCAACCTTACAGCTA 60.181 47.826 0.00 0.00 0.00 3.32
6849 7404 2.418746 CCTCGTATGCAACCTTACAGCT 60.419 50.000 0.00 0.00 0.00 4.24
6850 7405 1.933853 CCTCGTATGCAACCTTACAGC 59.066 52.381 0.00 0.00 0.00 4.40
6851 7406 3.247006 ACCTCGTATGCAACCTTACAG 57.753 47.619 0.00 0.00 0.00 2.74
6852 7407 3.688694 AACCTCGTATGCAACCTTACA 57.311 42.857 0.00 0.00 0.00 2.41
6853 7408 5.366829 AAAAACCTCGTATGCAACCTTAC 57.633 39.130 0.00 0.00 0.00 2.34
6854 7409 4.456566 GGAAAAACCTCGTATGCAACCTTA 59.543 41.667 0.00 0.00 35.41 2.69
6855 7410 3.254903 GGAAAAACCTCGTATGCAACCTT 59.745 43.478 0.00 0.00 35.41 3.50
6856 7411 2.817844 GGAAAAACCTCGTATGCAACCT 59.182 45.455 0.00 0.00 35.41 3.50
6857 7412 3.211803 GGAAAAACCTCGTATGCAACC 57.788 47.619 0.00 0.00 35.41 3.77
6875 7430 2.599281 TCGTCGGTTCCAGCAGGA 60.599 61.111 0.00 0.00 43.93 3.86
6876 7431 2.125912 CTCGTCGGTTCCAGCAGG 60.126 66.667 0.00 0.00 0.00 4.85
6877 7432 1.949847 ATCCTCGTCGGTTCCAGCAG 61.950 60.000 0.00 0.00 0.00 4.24
6878 7433 1.541310 AATCCTCGTCGGTTCCAGCA 61.541 55.000 0.00 0.00 0.00 4.41
6879 7434 0.806492 GAATCCTCGTCGGTTCCAGC 60.806 60.000 0.00 0.00 0.00 4.85
6880 7435 0.179108 GGAATCCTCGTCGGTTCCAG 60.179 60.000 10.46 0.00 40.13 3.86
6881 7436 0.613853 AGGAATCCTCGTCGGTTCCA 60.614 55.000 15.70 0.00 41.53 3.53
6882 7437 0.179108 CAGGAATCCTCGTCGGTTCC 60.179 60.000 0.00 8.05 40.42 3.62
6883 7438 0.806492 GCAGGAATCCTCGTCGGTTC 60.806 60.000 0.00 0.00 0.00 3.62
6884 7439 1.218316 GCAGGAATCCTCGTCGGTT 59.782 57.895 0.00 0.00 0.00 4.44
6885 7440 0.395311 TAGCAGGAATCCTCGTCGGT 60.395 55.000 0.00 0.00 0.00 4.69
6886 7441 0.030908 GTAGCAGGAATCCTCGTCGG 59.969 60.000 0.00 0.00 0.00 4.79
6887 7442 0.738975 TGTAGCAGGAATCCTCGTCG 59.261 55.000 0.00 0.00 0.00 5.12
6888 7443 2.815478 CTTGTAGCAGGAATCCTCGTC 58.185 52.381 0.00 0.00 0.00 4.20
6889 7444 1.134670 GCTTGTAGCAGGAATCCTCGT 60.135 52.381 0.00 0.00 41.89 4.18
6890 7445 1.576356 GCTTGTAGCAGGAATCCTCG 58.424 55.000 0.00 0.00 41.89 4.63
6901 7456 1.709147 CGCTCCATGGTGCTTGTAGC 61.709 60.000 30.35 20.06 42.82 3.58
6902 7457 1.091771 CCGCTCCATGGTGCTTGTAG 61.092 60.000 30.35 17.44 33.07 2.74
6903 7458 1.078497 CCGCTCCATGGTGCTTGTA 60.078 57.895 30.35 2.11 33.07 2.41
6904 7459 2.360350 CCGCTCCATGGTGCTTGT 60.360 61.111 30.35 0.00 33.07 3.16
6905 7460 1.526575 AAACCGCTCCATGGTGCTTG 61.527 55.000 30.35 23.90 40.35 4.01
6906 7461 0.827507 AAAACCGCTCCATGGTGCTT 60.828 50.000 30.35 19.13 40.35 3.91
6907 7462 0.827507 AAAAACCGCTCCATGGTGCT 60.828 50.000 30.35 14.68 40.35 4.40
6908 7463 1.665442 AAAAACCGCTCCATGGTGC 59.335 52.632 25.63 25.63 40.35 5.01
6929 7484 2.180159 AATCTCCACCCCCGTGTTCG 62.180 60.000 0.00 0.00 38.41 3.95
6930 7485 0.676782 CAATCTCCACCCCCGTGTTC 60.677 60.000 0.00 0.00 38.41 3.18
6931 7486 1.378762 CAATCTCCACCCCCGTGTT 59.621 57.895 0.00 0.00 38.41 3.32
6932 7487 1.846124 ACAATCTCCACCCCCGTGT 60.846 57.895 0.00 0.00 38.41 4.49
6933 7488 3.077907 ACAATCTCCACCCCCGTG 58.922 61.111 0.00 0.00 39.91 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.