Multiple sequence alignment - TraesCS6D01G094200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G094200 chr6D 100.000 2904 0 0 454 3357 58548249 58545346 0.000000e+00 5363
1 TraesCS6D01G094200 chr6D 100.000 98 0 0 1 98 58548702 58548605 7.400000e-42 182
2 TraesCS6D01G094200 chr6B 92.237 2074 100 18 782 2805 132120270 132118208 0.000000e+00 2881
3 TraesCS6D01G094200 chr6B 91.638 287 17 4 2792 3078 132118058 132117779 1.130000e-104 390
4 TraesCS6D01G094200 chr6A 94.894 1508 65 5 454 1960 73725492 73723996 0.000000e+00 2348
5 TraesCS6D01G094200 chr6A 91.608 715 33 11 1989 2681 73723938 73723229 0.000000e+00 963
6 TraesCS6D01G094200 chr6A 85.851 417 33 12 2683 3092 73723156 73722759 1.440000e-113 420
7 TraesCS6D01G094200 chr6A 96.610 59 2 0 1 59 73725991 73725933 7.670000e-17 99
8 TraesCS6D01G094200 chr4A 95.113 266 13 0 3092 3357 651088778 651088513 1.440000e-113 420
9 TraesCS6D01G094200 chr4A 92.509 267 20 0 3091 3357 558840513 558840779 1.890000e-102 383
10 TraesCS6D01G094200 chr4A 86.154 195 16 4 1284 1477 598226845 598227029 2.040000e-47 200
11 TraesCS6D01G094200 chr7B 94.737 266 14 0 3092 3357 13817431 13817166 6.700000e-112 414
12 TraesCS6D01G094200 chr7B 93.333 270 18 0 3088 3357 719446193 719445924 1.880000e-107 399
13 TraesCS6D01G094200 chr7D 94.737 266 13 1 3092 3357 148179863 148179599 2.410000e-111 412
14 TraesCS6D01G094200 chr5D 94.096 271 15 1 3087 3357 462417542 462417811 8.670000e-111 411
15 TraesCS6D01G094200 chr4B 92.910 268 19 0 3090 3357 631587422 631587689 1.130000e-104 390
16 TraesCS6D01G094200 chr2D 92.593 270 19 1 3088 3357 48408382 48408114 1.460000e-103 387
17 TraesCS6D01G094200 chr2A 92.135 267 20 1 3091 3357 487370053 487370318 3.160000e-100 375
18 TraesCS6D01G094200 chr2A 79.953 424 60 10 2639 3046 705290152 705290566 4.240000e-74 289
19 TraesCS6D01G094200 chr4D 75.103 727 97 43 1239 1911 303832743 303832047 2.570000e-66 263
20 TraesCS6D01G094200 chr3A 84.772 197 26 2 2021 2213 688434675 688434871 9.500000e-46 195
21 TraesCS6D01G094200 chr2B 78.922 204 26 5 1658 1848 68600032 68600231 4.550000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G094200 chr6D 58545346 58548702 3356 True 2772.5 5363 100.00000 1 3357 2 chr6D.!!$R1 3356
1 TraesCS6D01G094200 chr6B 132117779 132120270 2491 True 1635.5 2881 91.93750 782 3078 2 chr6B.!!$R1 2296
2 TraesCS6D01G094200 chr6A 73722759 73725991 3232 True 957.5 2348 92.24075 1 3092 4 chr6A.!!$R1 3091
3 TraesCS6D01G094200 chr4D 303832047 303832743 696 True 263.0 263 75.10300 1239 1911 1 chr4D.!!$R1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.038618 TTGTGACCGACCAGTGATCG 60.039 55.0 0.0 0.0 39.33 3.69 F
630 677 0.624254 CTTACACTTCCCCCTTCCCC 59.376 60.0 0.0 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1643 0.390603 TACACGGGATGGTTCAAGCG 60.391 55.0 0.0 0.0 0.0 4.68 R
2620 2796 0.591170 CATCGGTTGTTTGCGAGGTT 59.409 50.0 0.0 0.0 0.0 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.026431 GCAACTACTAGGGCCGGCA 62.026 63.158 30.85 6.81 0.00 5.69
59 60 2.159114 CCAGTTGGGTCAGGTTTTTGTG 60.159 50.000 0.00 0.00 0.00 3.33
60 61 2.757868 CAGTTGGGTCAGGTTTTTGTGA 59.242 45.455 0.00 0.00 0.00 3.58
61 62 2.758423 AGTTGGGTCAGGTTTTTGTGAC 59.242 45.455 0.00 0.00 42.06 3.67
65 66 2.750301 GTCAGGTTTTTGTGACCGAC 57.250 50.000 0.00 0.00 42.11 4.79
66 67 1.332686 GTCAGGTTTTTGTGACCGACC 59.667 52.381 0.00 0.00 42.11 4.79
67 68 1.065345 TCAGGTTTTTGTGACCGACCA 60.065 47.619 0.00 0.00 42.11 4.02
68 69 1.333619 CAGGTTTTTGTGACCGACCAG 59.666 52.381 0.00 0.00 42.11 4.00
69 70 1.064979 AGGTTTTTGTGACCGACCAGT 60.065 47.619 0.00 0.00 42.11 4.00
70 71 1.064952 GGTTTTTGTGACCGACCAGTG 59.935 52.381 0.00 0.00 0.00 3.66
71 72 2.011222 GTTTTTGTGACCGACCAGTGA 58.989 47.619 0.00 0.00 0.00 3.41
72 73 2.616842 GTTTTTGTGACCGACCAGTGAT 59.383 45.455 0.00 0.00 0.00 3.06
73 74 2.163818 TTTGTGACCGACCAGTGATC 57.836 50.000 0.00 0.00 0.00 2.92
74 75 0.038618 TTGTGACCGACCAGTGATCG 60.039 55.000 0.00 0.00 39.33 3.69
79 80 4.873129 CGACCAGTGATCGGGCCG 62.873 72.222 22.51 22.51 35.92 6.13
493 540 0.818040 GCCGGTGTCAAGAACCAAGT 60.818 55.000 1.90 0.00 37.57 3.16
559 606 1.708193 CTGCAGATTTCGCGCCATCA 61.708 55.000 8.42 2.20 0.00 3.07
625 672 1.897802 CACGTACTTACACTTCCCCCT 59.102 52.381 0.00 0.00 0.00 4.79
626 673 2.301009 CACGTACTTACACTTCCCCCTT 59.699 50.000 0.00 0.00 0.00 3.95
627 674 2.564504 ACGTACTTACACTTCCCCCTTC 59.435 50.000 0.00 0.00 0.00 3.46
628 675 2.093816 CGTACTTACACTTCCCCCTTCC 60.094 54.545 0.00 0.00 0.00 3.46
629 676 1.369403 ACTTACACTTCCCCCTTCCC 58.631 55.000 0.00 0.00 0.00 3.97
630 677 0.624254 CTTACACTTCCCCCTTCCCC 59.376 60.000 0.00 0.00 0.00 4.81
631 678 0.847758 TTACACTTCCCCCTTCCCCC 60.848 60.000 0.00 0.00 0.00 5.40
662 709 1.856265 CTCGGCTTGGCTCCACAAAC 61.856 60.000 0.00 0.00 0.00 2.93
819 866 2.027625 GGTGTCTTCTTGGTCCGCG 61.028 63.158 0.00 0.00 0.00 6.46
851 898 3.688272 TCGTCGAAAGAAGGCGTAATAG 58.312 45.455 0.00 0.00 45.01 1.73
862 909 1.069906 GGCGTAATAGCATGAAAGCGG 60.070 52.381 0.00 0.00 40.15 5.52
943 990 1.270041 CCCAAACCAAAACATCACCGG 60.270 52.381 0.00 0.00 0.00 5.28
994 1045 3.046390 CACTAATCTCGCTCGAATCCAC 58.954 50.000 0.00 0.00 0.00 4.02
1260 1311 2.022129 GGTGACGCAGGTGAAGACG 61.022 63.158 0.00 0.00 0.00 4.18
1332 1394 4.021925 GACAAGCTCACCCGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
1531 1631 1.532868 GATGCTTCGATCCCAATTCCG 59.467 52.381 0.00 0.00 0.00 4.30
1543 1643 2.030274 CCCAATTCCGTTTCCTGTCAAC 60.030 50.000 0.00 0.00 0.00 3.18
1587 1688 5.336055 CCAACGCCTGAAATTACCAACATAA 60.336 40.000 0.00 0.00 0.00 1.90
1628 1729 3.308595 GCCATTCATGTCAATGCAATGTG 59.691 43.478 0.85 0.00 33.76 3.21
1629 1730 4.500127 CCATTCATGTCAATGCAATGTGT 58.500 39.130 0.85 0.00 33.76 3.72
1652 1755 3.235157 TGCTTTGCAATGCCTAACATC 57.765 42.857 28.36 5.38 38.34 3.06
1693 1796 4.619760 GCGTTTACAGTTCCTTTATTTGCC 59.380 41.667 0.00 0.00 0.00 4.52
1858 1979 0.603707 TCAGTTTCTGAAGGCCAGCG 60.604 55.000 5.01 0.00 42.62 5.18
1869 1990 1.301244 GGCCAGCGACATCGATCAT 60.301 57.895 5.26 0.00 43.02 2.45
1891 2012 6.716628 TCATCATCCTTTGTGCTCTTAGTTTT 59.283 34.615 0.00 0.00 0.00 2.43
1969 2115 5.824624 AGTTGTGCCCTTGATACATTGATAG 59.175 40.000 0.00 0.00 0.00 2.08
2002 2156 2.223876 CCGATGCTCCATTTTTGGATGG 60.224 50.000 0.00 0.00 46.49 3.51
2011 2165 4.837860 TCCATTTTTGGATGGCTAACAACT 59.162 37.500 0.00 0.00 45.07 3.16
2022 2176 2.162408 GGCTAACAACTTGGATCAGCAC 59.838 50.000 0.00 0.00 0.00 4.40
2035 2195 7.982354 ACTTGGATCAGCACTTATACTCTTAAC 59.018 37.037 0.00 0.00 0.00 2.01
2044 2204 6.976925 GCACTTATACTCTTAACTTTCGCCTA 59.023 38.462 0.00 0.00 0.00 3.93
2299 2459 1.574526 CCATTCCTGGGAAGCAGGGA 61.575 60.000 8.11 0.00 40.16 4.20
2374 2534 1.151668 AGATCTGTGCTGCGTTTCAC 58.848 50.000 0.00 0.00 0.00 3.18
2457 2617 8.141268 CCAGGTTTTGTATACATGTTCAGTTTT 58.859 33.333 2.30 0.00 0.00 2.43
2503 2663 4.783764 TGCGTTCTCTCTTCTATGTTGA 57.216 40.909 0.00 0.00 0.00 3.18
2531 2692 5.105351 CCACTTTTCACCTTCTTTTGGACTT 60.105 40.000 0.00 0.00 0.00 3.01
2548 2709 3.498397 GGACTTGAAACGAAGCAGATTCA 59.502 43.478 0.00 0.00 37.83 2.57
2552 2713 2.731451 TGAAACGAAGCAGATTCACTCG 59.269 45.455 0.00 0.00 37.83 4.18
2553 2714 1.714794 AACGAAGCAGATTCACTCGG 58.285 50.000 0.00 0.00 37.83 4.63
2554 2715 0.108615 ACGAAGCAGATTCACTCGGG 60.109 55.000 0.00 0.00 37.83 5.14
2555 2716 0.173481 CGAAGCAGATTCACTCGGGA 59.827 55.000 0.00 0.00 37.83 5.14
2556 2717 1.202463 CGAAGCAGATTCACTCGGGAT 60.202 52.381 0.00 0.00 37.83 3.85
2557 2718 2.478831 GAAGCAGATTCACTCGGGATC 58.521 52.381 0.00 0.00 37.88 3.36
2558 2719 1.489481 AGCAGATTCACTCGGGATCA 58.511 50.000 0.00 0.00 0.00 2.92
2559 2720 1.411977 AGCAGATTCACTCGGGATCAG 59.588 52.381 0.00 0.00 0.00 2.90
2560 2721 1.410517 GCAGATTCACTCGGGATCAGA 59.589 52.381 0.00 0.00 0.00 3.27
2561 2722 2.036992 GCAGATTCACTCGGGATCAGAT 59.963 50.000 0.00 0.00 0.00 2.90
2620 2796 1.376086 CCACAGGGTGCATGTCAGA 59.624 57.895 0.00 0.00 31.34 3.27
2625 2801 0.326264 AGGGTGCATGTCAGAACCTC 59.674 55.000 0.00 0.00 37.37 3.85
2649 2825 0.462047 ACAACCGATGGAATCCGAGC 60.462 55.000 0.00 0.00 41.39 5.03
2739 2993 8.211030 AGGGAAAATGGAAGAGAATGATTTTT 57.789 30.769 0.00 0.00 0.00 1.94
2768 3022 1.639635 ATAGCTTGCCTCCCACCCAG 61.640 60.000 0.00 0.00 0.00 4.45
2836 3253 5.277828 GGTTTACAGTGGTTAAACTCTGCTG 60.278 44.000 19.84 11.47 34.95 4.41
2850 3267 9.856488 TTAAACTCTGCTGACATACTTAAGTAG 57.144 33.333 19.58 13.81 33.52 2.57
2851 3268 7.704578 AACTCTGCTGACATACTTAAGTAGA 57.295 36.000 19.58 10.15 33.52 2.59
2853 3270 7.328277 CTCTGCTGACATACTTAAGTAGAGT 57.672 40.000 19.58 18.87 41.69 3.24
2854 3271 8.439993 CTCTGCTGACATACTTAAGTAGAGTA 57.560 38.462 19.58 11.21 41.69 2.59
2855 3272 8.211116 TCTGCTGACATACTTAAGTAGAGTAC 57.789 38.462 19.58 13.21 32.82 2.73
2856 3273 8.047911 TCTGCTGACATACTTAAGTAGAGTACT 58.952 37.037 19.58 0.00 41.73 2.73
2892 3309 8.166066 GCAAAAATTACAATTAATCCGAACACC 58.834 33.333 0.00 0.00 0.00 4.16
2911 3328 2.159282 ACCGAGTACGCAAGAATGTAGG 60.159 50.000 0.00 0.00 43.62 3.18
2921 3338 3.501445 GCAAGAATGTAGGCCATCAGATC 59.499 47.826 5.01 6.59 31.75 2.75
2922 3339 3.674528 AGAATGTAGGCCATCAGATCG 57.325 47.619 5.01 0.00 31.75 3.69
2923 3340 3.234353 AGAATGTAGGCCATCAGATCGA 58.766 45.455 5.01 0.00 31.75 3.59
2931 3348 0.741326 CCATCAGATCGACGACTGGT 59.259 55.000 20.01 14.18 35.20 4.00
2933 3350 2.357952 CCATCAGATCGACGACTGGTAA 59.642 50.000 20.01 8.00 35.20 2.85
2954 3371 2.012673 CACTAAGCTTGCATCCTGGTC 58.987 52.381 9.86 0.00 0.00 4.02
2971 3388 1.268066 GTCGTTCCCTCTCTCCCTTT 58.732 55.000 0.00 0.00 0.00 3.11
3047 3464 0.678048 GGCTTCAGGCACCAGGTTAG 60.678 60.000 0.00 0.00 44.01 2.34
3092 3509 4.397420 TCACTGCTCAAACCACACATATT 58.603 39.130 0.00 0.00 0.00 1.28
3093 3510 4.826733 TCACTGCTCAAACCACACATATTT 59.173 37.500 0.00 0.00 0.00 1.40
3094 3511 5.301551 TCACTGCTCAAACCACACATATTTT 59.698 36.000 0.00 0.00 0.00 1.82
3095 3512 5.984926 CACTGCTCAAACCACACATATTTTT 59.015 36.000 0.00 0.00 0.00 1.94
3112 3529 3.926821 TTTTTCGATAAAGGGCGCTTT 57.073 38.095 28.79 28.79 0.00 3.51
3113 3530 3.926821 TTTTCGATAAAGGGCGCTTTT 57.073 38.095 30.56 19.07 0.00 2.27
3114 3531 5.373981 TTTTTCGATAAAGGGCGCTTTTA 57.626 34.783 30.56 17.78 0.00 1.52
3115 3532 5.570234 TTTTCGATAAAGGGCGCTTTTAT 57.430 34.783 30.56 20.97 34.36 1.40
3116 3533 5.570234 TTTCGATAAAGGGCGCTTTTATT 57.430 34.783 30.56 17.35 32.42 1.40
3117 3534 6.680874 TTTCGATAAAGGGCGCTTTTATTA 57.319 33.333 30.56 15.38 32.42 0.98
3118 3535 6.680874 TTCGATAAAGGGCGCTTTTATTAA 57.319 33.333 30.56 18.04 32.42 1.40
3119 3536 6.051646 TCGATAAAGGGCGCTTTTATTAAC 57.948 37.500 30.56 12.72 32.42 2.01
3120 3537 5.818857 TCGATAAAGGGCGCTTTTATTAACT 59.181 36.000 30.56 9.43 32.42 2.24
3121 3538 6.018507 TCGATAAAGGGCGCTTTTATTAACTC 60.019 38.462 30.56 15.50 32.42 3.01
3122 3539 6.238266 CGATAAAGGGCGCTTTTATTAACTCA 60.238 38.462 30.56 12.27 32.42 3.41
3123 3540 5.715434 AAAGGGCGCTTTTATTAACTCAA 57.285 34.783 21.93 0.00 0.00 3.02
3124 3541 5.715434 AAGGGCGCTTTTATTAACTCAAA 57.285 34.783 10.73 0.00 0.00 2.69
3125 3542 5.715434 AGGGCGCTTTTATTAACTCAAAA 57.285 34.783 7.64 0.00 0.00 2.44
3126 3543 6.280855 AGGGCGCTTTTATTAACTCAAAAT 57.719 33.333 7.64 0.00 0.00 1.82
3127 3544 6.099341 AGGGCGCTTTTATTAACTCAAAATG 58.901 36.000 7.64 0.00 0.00 2.32
3128 3545 5.867174 GGGCGCTTTTATTAACTCAAAATGT 59.133 36.000 7.64 0.00 0.00 2.71
3129 3546 7.030768 GGGCGCTTTTATTAACTCAAAATGTA 58.969 34.615 7.64 0.00 0.00 2.29
3130 3547 7.220108 GGGCGCTTTTATTAACTCAAAATGTAG 59.780 37.037 7.64 0.00 0.00 2.74
3131 3548 7.253651 GGCGCTTTTATTAACTCAAAATGTAGC 60.254 37.037 7.64 0.00 0.00 3.58
3132 3549 7.272515 GCGCTTTTATTAACTCAAAATGTAGCA 59.727 33.333 0.00 0.00 0.00 3.49
3133 3550 9.289303 CGCTTTTATTAACTCAAAATGTAGCAT 57.711 29.630 0.00 0.00 0.00 3.79
3138 3555 9.787532 TTATTAACTCAAAATGTAGCATCAAGC 57.212 29.630 0.00 0.00 46.19 4.01
3150 3567 3.485947 GCATCAAGCGGATACAAAACA 57.514 42.857 0.00 0.00 33.95 2.83
3151 3568 4.032703 GCATCAAGCGGATACAAAACAT 57.967 40.909 0.00 0.00 33.95 2.71
3152 3569 4.037690 GCATCAAGCGGATACAAAACATC 58.962 43.478 0.00 0.00 33.95 3.06
3153 3570 4.438608 GCATCAAGCGGATACAAAACATCA 60.439 41.667 0.00 0.00 33.95 3.07
3154 3571 5.734220 GCATCAAGCGGATACAAAACATCAT 60.734 40.000 0.00 0.00 33.95 2.45
3155 3572 5.233957 TCAAGCGGATACAAAACATCATG 57.766 39.130 0.00 0.00 0.00 3.07
3156 3573 4.940654 TCAAGCGGATACAAAACATCATGA 59.059 37.500 0.00 0.00 0.00 3.07
3157 3574 5.065090 TCAAGCGGATACAAAACATCATGAG 59.935 40.000 0.09 0.00 0.00 2.90
3158 3575 4.517285 AGCGGATACAAAACATCATGAGT 58.483 39.130 0.09 0.00 0.00 3.41
3159 3576 5.670485 AGCGGATACAAAACATCATGAGTA 58.330 37.500 0.09 0.00 0.00 2.59
3160 3577 6.291377 AGCGGATACAAAACATCATGAGTAT 58.709 36.000 0.09 2.13 0.00 2.12
3161 3578 6.425114 AGCGGATACAAAACATCATGAGTATC 59.575 38.462 16.55 16.55 37.92 2.24
3171 3588 3.950232 TGAGTATCACCCGGCCTC 58.050 61.111 0.00 0.00 42.56 4.70
3172 3589 1.310030 TGAGTATCACCCGGCCTCT 59.690 57.895 0.00 0.00 42.56 3.69
3173 3590 1.043116 TGAGTATCACCCGGCCTCTG 61.043 60.000 0.00 0.00 42.56 3.35
3174 3591 2.109181 GTATCACCCGGCCTCTGC 59.891 66.667 0.00 0.00 0.00 4.26
3175 3592 2.364973 TATCACCCGGCCTCTGCA 60.365 61.111 0.00 0.00 40.13 4.41
3176 3593 1.766059 TATCACCCGGCCTCTGCAT 60.766 57.895 0.00 0.00 40.13 3.96
3177 3594 0.471022 TATCACCCGGCCTCTGCATA 60.471 55.000 0.00 0.00 40.13 3.14
3178 3595 1.344953 ATCACCCGGCCTCTGCATAA 61.345 55.000 0.00 0.00 40.13 1.90
3179 3596 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
3180 3597 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
3181 3598 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
3182 3599 0.034059 CCCGGCCTCTGCATAACTAG 59.966 60.000 0.00 0.00 40.13 2.57
3183 3600 0.034059 CCGGCCTCTGCATAACTAGG 59.966 60.000 0.00 0.00 40.13 3.02
3184 3601 1.040646 CGGCCTCTGCATAACTAGGA 58.959 55.000 0.00 0.00 40.13 2.94
3185 3602 1.620819 CGGCCTCTGCATAACTAGGAT 59.379 52.381 0.00 0.00 40.13 3.24
3186 3603 2.611473 CGGCCTCTGCATAACTAGGATG 60.611 54.545 0.00 0.00 40.13 3.51
3201 3618 3.963676 GATGCACACAGCCAAACAA 57.036 47.368 0.00 0.00 44.83 2.83
3202 3619 1.490621 GATGCACACAGCCAAACAAC 58.509 50.000 0.00 0.00 44.83 3.32
3203 3620 0.822811 ATGCACACAGCCAAACAACA 59.177 45.000 0.00 0.00 44.83 3.33
3204 3621 0.605083 TGCACACAGCCAAACAACAA 59.395 45.000 0.00 0.00 44.83 2.83
3205 3622 1.001293 TGCACACAGCCAAACAACAAA 59.999 42.857 0.00 0.00 44.83 2.83
3206 3623 2.072298 GCACACAGCCAAACAACAAAA 58.928 42.857 0.00 0.00 37.23 2.44
3207 3624 2.094099 GCACACAGCCAAACAACAAAAG 59.906 45.455 0.00 0.00 37.23 2.27
3208 3625 3.324993 CACACAGCCAAACAACAAAAGT 58.675 40.909 0.00 0.00 0.00 2.66
3209 3626 3.123284 CACACAGCCAAACAACAAAAGTG 59.877 43.478 0.00 0.00 0.00 3.16
3210 3627 3.244044 ACACAGCCAAACAACAAAAGTGT 60.244 39.130 0.00 0.00 40.75 3.55
3211 3628 3.123284 CACAGCCAAACAACAAAAGTGTG 59.877 43.478 0.00 0.00 38.27 3.82
3212 3629 3.244044 ACAGCCAAACAACAAAAGTGTGT 60.244 39.130 0.00 0.00 38.27 3.72
3213 3630 3.367630 CAGCCAAACAACAAAAGTGTGTC 59.632 43.478 0.00 0.00 38.27 3.67
3214 3631 3.006323 AGCCAAACAACAAAAGTGTGTCA 59.994 39.130 0.00 0.00 38.27 3.58
3215 3632 3.743396 GCCAAACAACAAAAGTGTGTCAA 59.257 39.130 0.00 0.00 38.27 3.18
3216 3633 4.212214 GCCAAACAACAAAAGTGTGTCAAA 59.788 37.500 0.00 0.00 38.27 2.69
3217 3634 5.277538 GCCAAACAACAAAAGTGTGTCAAAA 60.278 36.000 0.00 0.00 38.27 2.44
3218 3635 6.361899 CCAAACAACAAAAGTGTGTCAAAAG 58.638 36.000 0.00 0.00 38.27 2.27
3219 3636 6.361899 CAAACAACAAAAGTGTGTCAAAAGG 58.638 36.000 0.00 0.00 38.27 3.11
3220 3637 5.461032 ACAACAAAAGTGTGTCAAAAGGA 57.539 34.783 0.00 0.00 38.27 3.36
3221 3638 5.848406 ACAACAAAAGTGTGTCAAAAGGAA 58.152 33.333 0.00 0.00 38.27 3.36
3222 3639 6.284459 ACAACAAAAGTGTGTCAAAAGGAAA 58.716 32.000 0.00 0.00 38.27 3.13
3223 3640 6.763610 ACAACAAAAGTGTGTCAAAAGGAAAA 59.236 30.769 0.00 0.00 38.27 2.29
3224 3641 7.042119 ACAACAAAAGTGTGTCAAAAGGAAAAG 60.042 33.333 0.00 0.00 38.27 2.27
3225 3642 6.521162 ACAAAAGTGTGTCAAAAGGAAAAGT 58.479 32.000 0.00 0.00 36.31 2.66
3226 3643 7.662897 ACAAAAGTGTGTCAAAAGGAAAAGTA 58.337 30.769 0.00 0.00 36.31 2.24
3227 3644 8.145122 ACAAAAGTGTGTCAAAAGGAAAAGTAA 58.855 29.630 0.00 0.00 36.31 2.24
3228 3645 8.432359 CAAAAGTGTGTCAAAAGGAAAAGTAAC 58.568 33.333 0.00 0.00 0.00 2.50
3229 3646 6.827586 AGTGTGTCAAAAGGAAAAGTAACA 57.172 33.333 0.00 0.00 0.00 2.41
3230 3647 7.222000 AGTGTGTCAAAAGGAAAAGTAACAA 57.778 32.000 0.00 0.00 0.00 2.83
3231 3648 7.662897 AGTGTGTCAAAAGGAAAAGTAACAAA 58.337 30.769 0.00 0.00 0.00 2.83
3232 3649 8.145122 AGTGTGTCAAAAGGAAAAGTAACAAAA 58.855 29.630 0.00 0.00 0.00 2.44
3233 3650 8.766151 GTGTGTCAAAAGGAAAAGTAACAAAAA 58.234 29.630 0.00 0.00 0.00 1.94
3234 3651 9.495572 TGTGTCAAAAGGAAAAGTAACAAAAAT 57.504 25.926 0.00 0.00 0.00 1.82
3235 3652 9.753669 GTGTCAAAAGGAAAAGTAACAAAAATG 57.246 29.630 0.00 0.00 0.00 2.32
3236 3653 9.712305 TGTCAAAAGGAAAAGTAACAAAAATGA 57.288 25.926 0.00 0.00 0.00 2.57
3243 3660 9.893305 AGGAAAAGTAACAAAAATGATAAGTCG 57.107 29.630 0.00 0.00 0.00 4.18
3244 3661 9.887406 GGAAAAGTAACAAAAATGATAAGTCGA 57.113 29.630 0.00 0.00 0.00 4.20
3248 3665 9.659830 AAGTAACAAAAATGATAAGTCGACAAC 57.340 29.630 19.50 6.36 0.00 3.32
3249 3666 8.832521 AGTAACAAAAATGATAAGTCGACAACA 58.167 29.630 19.50 11.82 0.00 3.33
3250 3667 9.103048 GTAACAAAAATGATAAGTCGACAACAG 57.897 33.333 19.50 2.88 0.00 3.16
3251 3668 7.259290 ACAAAAATGATAAGTCGACAACAGT 57.741 32.000 19.50 8.22 0.00 3.55
3252 3669 8.373048 ACAAAAATGATAAGTCGACAACAGTA 57.627 30.769 19.50 2.03 0.00 2.74
3253 3670 8.495949 ACAAAAATGATAAGTCGACAACAGTAG 58.504 33.333 19.50 7.48 0.00 2.57
3254 3671 8.708742 CAAAAATGATAAGTCGACAACAGTAGA 58.291 33.333 19.50 0.00 0.00 2.59
3255 3672 8.467402 AAAATGATAAGTCGACAACAGTAGAG 57.533 34.615 19.50 0.00 0.00 2.43
3256 3673 6.761099 ATGATAAGTCGACAACAGTAGAGT 57.239 37.500 19.50 0.00 0.00 3.24
3257 3674 6.179504 TGATAAGTCGACAACAGTAGAGTC 57.820 41.667 19.50 1.86 0.00 3.36
3258 3675 3.919223 AAGTCGACAACAGTAGAGTCC 57.081 47.619 19.50 0.00 0.00 3.85
3259 3676 3.143211 AGTCGACAACAGTAGAGTCCT 57.857 47.619 19.50 0.00 0.00 3.85
3260 3677 4.283363 AGTCGACAACAGTAGAGTCCTA 57.717 45.455 19.50 0.00 0.00 2.94
3261 3678 4.002316 AGTCGACAACAGTAGAGTCCTAC 58.998 47.826 19.50 0.00 44.32 3.18
3262 3679 3.750130 GTCGACAACAGTAGAGTCCTACA 59.250 47.826 11.55 0.00 45.95 2.74
3263 3680 4.395542 GTCGACAACAGTAGAGTCCTACAT 59.604 45.833 11.55 0.00 45.95 2.29
3264 3681 5.583854 GTCGACAACAGTAGAGTCCTACATA 59.416 44.000 11.55 0.00 45.95 2.29
3265 3682 6.260493 GTCGACAACAGTAGAGTCCTACATAT 59.740 42.308 11.55 0.00 45.95 1.78
3266 3683 6.482641 TCGACAACAGTAGAGTCCTACATATC 59.517 42.308 0.00 0.00 45.95 1.63
3267 3684 6.564312 CGACAACAGTAGAGTCCTACATATCG 60.564 46.154 0.00 0.00 45.95 2.92
3268 3685 6.354938 ACAACAGTAGAGTCCTACATATCGA 58.645 40.000 0.00 0.00 45.95 3.59
3269 3686 6.260493 ACAACAGTAGAGTCCTACATATCGAC 59.740 42.308 0.00 0.00 45.95 4.20
3270 3687 5.926663 ACAGTAGAGTCCTACATATCGACA 58.073 41.667 0.00 0.00 45.95 4.35
3271 3688 5.759273 ACAGTAGAGTCCTACATATCGACAC 59.241 44.000 0.00 0.00 45.95 3.67
3272 3689 5.992829 CAGTAGAGTCCTACATATCGACACT 59.007 44.000 0.00 0.00 45.95 3.55
3273 3690 7.153315 CAGTAGAGTCCTACATATCGACACTA 58.847 42.308 0.00 0.00 45.95 2.74
3274 3691 7.820386 CAGTAGAGTCCTACATATCGACACTAT 59.180 40.741 0.00 0.00 45.95 2.12
3275 3692 7.820386 AGTAGAGTCCTACATATCGACACTATG 59.180 40.741 3.50 3.50 45.95 2.23
3276 3693 5.413213 AGAGTCCTACATATCGACACTATGC 59.587 44.000 4.74 0.00 31.12 3.14
3277 3694 4.459685 AGTCCTACATATCGACACTATGCC 59.540 45.833 4.74 0.00 31.12 4.40
3278 3695 4.459685 GTCCTACATATCGACACTATGCCT 59.540 45.833 4.74 0.00 31.12 4.75
3279 3696 5.646793 GTCCTACATATCGACACTATGCCTA 59.353 44.000 4.74 0.00 31.12 3.93
3280 3697 6.319152 GTCCTACATATCGACACTATGCCTAT 59.681 42.308 4.74 0.00 31.12 2.57
3281 3698 6.318900 TCCTACATATCGACACTATGCCTATG 59.681 42.308 4.74 0.93 31.12 2.23
3282 3699 5.984695 ACATATCGACACTATGCCTATGT 57.015 39.130 4.74 1.49 31.12 2.29
3283 3700 5.955488 ACATATCGACACTATGCCTATGTC 58.045 41.667 4.74 0.00 39.50 3.06
3284 3701 5.476945 ACATATCGACACTATGCCTATGTCA 59.523 40.000 4.74 0.00 42.37 3.58
3285 3702 4.937201 ATCGACACTATGCCTATGTCAA 57.063 40.909 4.65 0.00 42.37 3.18
3286 3703 4.729227 TCGACACTATGCCTATGTCAAA 57.271 40.909 4.65 0.00 42.37 2.69
3287 3704 5.079689 TCGACACTATGCCTATGTCAAAA 57.920 39.130 4.65 0.00 42.37 2.44
3288 3705 5.483811 TCGACACTATGCCTATGTCAAAAA 58.516 37.500 4.65 0.00 42.37 1.94
3289 3706 6.112734 TCGACACTATGCCTATGTCAAAAAT 58.887 36.000 4.65 0.00 42.37 1.82
3290 3707 6.037062 TCGACACTATGCCTATGTCAAAAATG 59.963 38.462 4.65 0.00 42.37 2.32
3291 3708 6.455360 ACACTATGCCTATGTCAAAAATGG 57.545 37.500 0.00 0.00 0.00 3.16
3292 3709 6.186957 ACACTATGCCTATGTCAAAAATGGA 58.813 36.000 0.00 0.00 0.00 3.41
3293 3710 6.319658 ACACTATGCCTATGTCAAAAATGGAG 59.680 38.462 0.00 0.00 0.00 3.86
3294 3711 5.829924 ACTATGCCTATGTCAAAAATGGAGG 59.170 40.000 0.00 0.00 0.00 4.30
3295 3712 4.046286 TGCCTATGTCAAAAATGGAGGT 57.954 40.909 0.00 0.00 0.00 3.85
3296 3713 5.186256 TGCCTATGTCAAAAATGGAGGTA 57.814 39.130 0.00 0.00 0.00 3.08
3297 3714 5.192927 TGCCTATGTCAAAAATGGAGGTAG 58.807 41.667 0.00 0.00 0.00 3.18
3298 3715 5.045213 TGCCTATGTCAAAAATGGAGGTAGA 60.045 40.000 0.00 0.00 0.00 2.59
3299 3716 6.064717 GCCTATGTCAAAAATGGAGGTAGAT 58.935 40.000 0.00 0.00 0.00 1.98
3300 3717 6.205658 GCCTATGTCAAAAATGGAGGTAGATC 59.794 42.308 0.00 0.00 0.00 2.75
3301 3718 6.425114 CCTATGTCAAAAATGGAGGTAGATCG 59.575 42.308 0.00 0.00 0.00 3.69
3302 3719 5.414789 TGTCAAAAATGGAGGTAGATCGA 57.585 39.130 0.00 0.00 0.00 3.59
3303 3720 5.989477 TGTCAAAAATGGAGGTAGATCGAT 58.011 37.500 0.00 0.00 0.00 3.59
3304 3721 6.414732 TGTCAAAAATGGAGGTAGATCGATT 58.585 36.000 0.00 0.00 0.00 3.34
3305 3722 6.538742 TGTCAAAAATGGAGGTAGATCGATTC 59.461 38.462 0.00 0.00 28.73 2.52
3306 3723 6.538742 GTCAAAAATGGAGGTAGATCGATTCA 59.461 38.462 0.00 0.00 28.73 2.57
3307 3724 6.763135 TCAAAAATGGAGGTAGATCGATTCAG 59.237 38.462 0.00 0.00 28.73 3.02
3308 3725 6.485830 AAAATGGAGGTAGATCGATTCAGA 57.514 37.500 0.00 0.00 28.73 3.27
3309 3726 5.720371 AATGGAGGTAGATCGATTCAGAG 57.280 43.478 0.00 0.00 0.00 3.35
3310 3727 3.491342 TGGAGGTAGATCGATTCAGAGG 58.509 50.000 0.00 0.00 0.00 3.69
3311 3728 3.117474 TGGAGGTAGATCGATTCAGAGGT 60.117 47.826 0.00 0.00 0.00 3.85
3312 3729 3.892588 GGAGGTAGATCGATTCAGAGGTT 59.107 47.826 0.00 0.00 0.00 3.50
3313 3730 5.071370 GGAGGTAGATCGATTCAGAGGTTA 58.929 45.833 0.00 0.00 0.00 2.85
3314 3731 5.712917 GGAGGTAGATCGATTCAGAGGTTAT 59.287 44.000 0.00 0.00 0.00 1.89
3315 3732 6.349777 GGAGGTAGATCGATTCAGAGGTTATG 60.350 46.154 0.00 0.00 0.00 1.90
3316 3733 6.307776 AGGTAGATCGATTCAGAGGTTATGA 58.692 40.000 0.00 0.00 0.00 2.15
3317 3734 6.951198 AGGTAGATCGATTCAGAGGTTATGAT 59.049 38.462 0.00 0.00 0.00 2.45
3318 3735 7.032580 GGTAGATCGATTCAGAGGTTATGATG 58.967 42.308 0.00 0.00 0.00 3.07
3319 3736 5.477510 AGATCGATTCAGAGGTTATGATGC 58.522 41.667 0.00 0.00 0.00 3.91
3320 3737 3.995199 TCGATTCAGAGGTTATGATGCC 58.005 45.455 0.00 0.00 0.00 4.40
3321 3738 3.387699 TCGATTCAGAGGTTATGATGCCA 59.612 43.478 0.00 0.00 0.00 4.92
3322 3739 3.496130 CGATTCAGAGGTTATGATGCCAC 59.504 47.826 0.00 0.00 0.00 5.01
3323 3740 3.281727 TTCAGAGGTTATGATGCCACC 57.718 47.619 0.00 0.00 0.00 4.61
3324 3741 1.490490 TCAGAGGTTATGATGCCACCC 59.510 52.381 0.00 0.00 0.00 4.61
3325 3742 1.212688 CAGAGGTTATGATGCCACCCA 59.787 52.381 0.00 0.00 0.00 4.51
3326 3743 2.138542 AGAGGTTATGATGCCACCCAT 58.861 47.619 0.00 0.00 36.70 4.00
3327 3744 2.158564 AGAGGTTATGATGCCACCCATG 60.159 50.000 0.00 0.00 33.29 3.66
3328 3745 1.570501 AGGTTATGATGCCACCCATGT 59.429 47.619 0.00 0.00 33.29 3.21
3329 3746 2.024080 AGGTTATGATGCCACCCATGTT 60.024 45.455 0.00 0.00 33.29 2.71
3330 3747 2.101249 GGTTATGATGCCACCCATGTTG 59.899 50.000 0.00 0.00 33.29 3.33
3331 3748 3.023119 GTTATGATGCCACCCATGTTGA 58.977 45.455 0.00 0.00 33.29 3.18
3332 3749 2.234896 ATGATGCCACCCATGTTGAA 57.765 45.000 0.00 0.00 33.29 2.69
3333 3750 2.006805 TGATGCCACCCATGTTGAAA 57.993 45.000 0.00 0.00 33.29 2.69
3334 3751 2.323599 TGATGCCACCCATGTTGAAAA 58.676 42.857 0.00 0.00 33.29 2.29
3335 3752 2.702478 TGATGCCACCCATGTTGAAAAA 59.298 40.909 0.00 0.00 33.29 1.94
3355 3772 3.990318 AAAATCTTAATAGCCGCCTGC 57.010 42.857 0.00 0.00 41.71 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.600107 CCGGCCCTAGTAGTTGCAA 59.400 57.895 0.00 0.00 0.00 4.08
29 30 1.280457 GACCCAACTGGACTCCTCAT 58.720 55.000 0.00 0.00 37.39 2.90
62 63 4.873129 CGGCCCGATCACTGGTCG 62.873 72.222 0.00 4.60 41.39 4.79
79 80 4.547367 CTTCCCATCCGGTCGGGC 62.547 72.222 21.98 0.00 42.75 6.13
80 81 2.762459 TCTTCCCATCCGGTCGGG 60.762 66.667 21.07 21.07 44.60 5.14
483 530 5.377478 AGGAAAAATCGAGACTTGGTTCTT 58.623 37.500 0.00 0.00 0.00 2.52
493 540 3.949754 TCTAGCGGTAGGAAAAATCGAGA 59.050 43.478 20.78 0.00 0.00 4.04
628 675 3.787001 GAGGAGGACGCAAGGGGG 61.787 72.222 0.00 0.00 46.39 5.40
629 676 4.148825 CGAGGAGGACGCAAGGGG 62.149 72.222 0.00 0.00 46.39 4.79
630 677 4.148825 CCGAGGAGGACGCAAGGG 62.149 72.222 0.00 0.00 45.00 3.95
631 678 4.821589 GCCGAGGAGGACGCAAGG 62.822 72.222 0.00 0.00 45.00 3.61
640 687 3.393970 TGGAGCCAAGCCGAGGAG 61.394 66.667 0.00 0.00 0.00 3.69
642 689 3.551496 TTGTGGAGCCAAGCCGAGG 62.551 63.158 0.00 0.00 0.00 4.63
662 709 4.232221 GTGAAGCACTCAAATCAACCATG 58.768 43.478 0.00 0.00 35.22 3.66
851 898 2.751436 TGGGAGCCGCTTTCATGC 60.751 61.111 0.00 0.00 0.00 4.06
943 990 2.358369 TCACTCTGCTGCTGCTGC 60.358 61.111 22.51 22.51 40.48 5.25
971 1022 2.543861 GGATTCGAGCGAGATTAGTGCA 60.544 50.000 0.00 0.00 0.00 4.57
1152 1203 0.625316 TCATCATCCCCACCTTGGTG 59.375 55.000 12.54 12.54 35.17 4.17
1531 1631 2.540973 GGTTCAAGCGTTGACAGGAAAC 60.541 50.000 0.76 0.00 39.87 2.78
1543 1643 0.390603 TACACGGGATGGTTCAAGCG 60.391 55.000 0.00 0.00 0.00 4.68
1752 1866 2.821969 ACATGGGAATGTCAGAAACTGC 59.178 45.455 0.00 0.00 0.00 4.40
1759 1873 6.028146 TGAAATGAAACATGGGAATGTCAG 57.972 37.500 0.00 0.00 32.87 3.51
1766 1880 7.937942 ACAAATCAATTGAAATGAAACATGGGA 59.062 29.630 23.16 0.00 41.85 4.37
1854 1975 1.991264 GGATGATGATCGATGTCGCTG 59.009 52.381 0.54 0.00 39.60 5.18
1858 1979 4.319333 GCACAAAGGATGATGATCGATGTC 60.319 45.833 0.54 1.09 0.00 3.06
1869 1990 6.061441 TCAAAACTAAGAGCACAAAGGATGA 58.939 36.000 0.00 0.00 0.00 2.92
1891 2012 5.392272 GCATGTCACAAGCTGTCAATATTCA 60.392 40.000 0.00 0.00 0.00 2.57
1996 2150 3.010027 TGATCCAAGTTGTTAGCCATCCA 59.990 43.478 1.45 0.00 0.00 3.41
2002 2156 3.077359 AGTGCTGATCCAAGTTGTTAGC 58.923 45.455 1.45 2.94 0.00 3.09
2011 2165 8.079211 AGTTAAGAGTATAAGTGCTGATCCAA 57.921 34.615 0.00 0.00 0.00 3.53
2022 2176 8.979574 CCATTAGGCGAAAGTTAAGAGTATAAG 58.020 37.037 0.00 0.00 0.00 1.73
2035 2195 4.701956 ATGACAAACCATTAGGCGAAAG 57.298 40.909 0.00 0.00 39.06 2.62
2044 2204 4.121317 CTGCACAACAATGACAAACCATT 58.879 39.130 0.00 0.00 37.24 3.16
2299 2459 1.298859 GCGTGATGCGGAGAAGGTTT 61.299 55.000 0.00 0.00 41.69 3.27
2374 2534 5.701290 AGGAAACGAATGAACTCTTACAAGG 59.299 40.000 0.00 0.00 0.00 3.61
2481 2641 5.105752 GTCAACATAGAAGAGAGAACGCAT 58.894 41.667 0.00 0.00 0.00 4.73
2485 2645 6.146347 GTGGTTGTCAACATAGAAGAGAGAAC 59.854 42.308 17.29 0.00 33.34 3.01
2491 2651 6.826231 TGAAAAGTGGTTGTCAACATAGAAGA 59.174 34.615 17.29 0.00 0.00 2.87
2492 2652 6.912591 GTGAAAAGTGGTTGTCAACATAGAAG 59.087 38.462 17.29 0.00 0.00 2.85
2493 2653 6.183360 GGTGAAAAGTGGTTGTCAACATAGAA 60.183 38.462 17.29 0.00 0.00 2.10
2503 2663 5.478407 CAAAAGAAGGTGAAAAGTGGTTGT 58.522 37.500 0.00 0.00 0.00 3.32
2531 2692 2.731451 CGAGTGAATCTGCTTCGTTTCA 59.269 45.455 0.00 0.00 36.60 2.69
2548 2709 5.422214 ACAGTAAAAATCTGATCCCGAGT 57.578 39.130 0.00 0.00 36.81 4.18
2577 2753 5.692814 CATGCCAATATCTACAATCAACCG 58.307 41.667 0.00 0.00 0.00 4.44
2586 2762 2.816087 CTGTGGGCATGCCAATATCTAC 59.184 50.000 36.56 21.42 37.98 2.59
2620 2796 0.591170 CATCGGTTGTTTGCGAGGTT 59.409 50.000 0.00 0.00 0.00 3.50
2625 2801 1.467374 GGATTCCATCGGTTGTTTGCG 60.467 52.381 0.00 0.00 0.00 4.85
2744 2998 2.446435 GTGGGAGGCAAGCTATCAAAA 58.554 47.619 0.00 0.00 0.00 2.44
2768 3022 3.846586 TATAAAGGGCAGCGCAGAGGC 62.847 57.143 11.47 11.58 0.00 4.70
2862 3279 7.607250 TCGGATTAATTGTAATTTTTGCACCT 58.393 30.769 0.00 0.00 29.69 4.00
2892 3309 1.852895 GCCTACATTCTTGCGTACTCG 59.147 52.381 0.00 0.00 40.37 4.18
2911 3328 0.596083 CCAGTCGTCGATCTGATGGC 60.596 60.000 19.74 4.00 38.55 4.40
2921 3338 2.095364 AGCTTAGTGTTACCAGTCGTCG 60.095 50.000 0.00 0.00 0.00 5.12
2922 3339 3.572604 AGCTTAGTGTTACCAGTCGTC 57.427 47.619 0.00 0.00 0.00 4.20
2923 3340 3.650139 CAAGCTTAGTGTTACCAGTCGT 58.350 45.455 0.00 0.00 0.00 4.34
2931 3348 3.009033 ACCAGGATGCAAGCTTAGTGTTA 59.991 43.478 0.00 0.00 31.97 2.41
2933 3350 1.352352 ACCAGGATGCAAGCTTAGTGT 59.648 47.619 0.00 0.00 31.97 3.55
2954 3371 0.391793 GCAAAGGGAGAGAGGGAACG 60.392 60.000 0.00 0.00 0.00 3.95
2971 3388 3.751479 TCAGAACAGAGCTAAACAGCA 57.249 42.857 0.00 0.00 37.25 4.41
3047 3464 1.294780 CTGTCACAGGCCTCAGGTC 59.705 63.158 0.00 0.00 0.00 3.85
3053 3470 1.002868 GATGCACTGTCACAGGCCT 60.003 57.895 10.28 0.00 35.51 5.19
3092 3509 3.926821 AAAGCGCCCTTTATCGAAAAA 57.073 38.095 2.29 0.00 39.44 1.94
3093 3510 3.926821 AAAAGCGCCCTTTATCGAAAA 57.073 38.095 2.29 0.00 40.30 2.29
3094 3511 5.570234 AATAAAAGCGCCCTTTATCGAAA 57.430 34.783 19.70 0.75 40.30 3.46
3095 3512 6.316890 AGTTAATAAAAGCGCCCTTTATCGAA 59.683 34.615 19.70 15.32 40.30 3.71
3096 3513 5.818857 AGTTAATAAAAGCGCCCTTTATCGA 59.181 36.000 19.70 11.68 40.30 3.59
3097 3514 6.056428 AGTTAATAAAAGCGCCCTTTATCG 57.944 37.500 19.70 0.00 40.30 2.92
3098 3515 7.023197 TGAGTTAATAAAAGCGCCCTTTATC 57.977 36.000 19.70 11.78 40.30 1.75
3099 3516 7.399245 TTGAGTTAATAAAAGCGCCCTTTAT 57.601 32.000 15.73 15.73 40.30 1.40
3100 3517 6.821031 TTGAGTTAATAAAAGCGCCCTTTA 57.179 33.333 2.29 9.36 40.30 1.85
3101 3518 5.715434 TTGAGTTAATAAAAGCGCCCTTT 57.285 34.783 2.29 7.08 42.93 3.11
3102 3519 5.715434 TTTGAGTTAATAAAAGCGCCCTT 57.285 34.783 2.29 0.00 0.00 3.95
3103 3520 5.715434 TTTTGAGTTAATAAAAGCGCCCT 57.285 34.783 2.29 0.00 0.00 5.19
3104 3521 5.867174 ACATTTTGAGTTAATAAAAGCGCCC 59.133 36.000 2.29 0.00 0.00 6.13
3105 3522 6.944557 ACATTTTGAGTTAATAAAAGCGCC 57.055 33.333 2.29 0.00 0.00 6.53
3106 3523 7.272515 TGCTACATTTTGAGTTAATAAAAGCGC 59.727 33.333 0.00 0.00 0.00 5.92
3107 3524 8.667987 TGCTACATTTTGAGTTAATAAAAGCG 57.332 30.769 0.00 0.00 0.00 4.68
3112 3529 9.787532 GCTTGATGCTACATTTTGAGTTAATAA 57.212 29.630 0.00 0.00 38.95 1.40
3113 3530 8.122330 CGCTTGATGCTACATTTTGAGTTAATA 58.878 33.333 0.00 0.00 40.11 0.98
3114 3531 6.968904 CGCTTGATGCTACATTTTGAGTTAAT 59.031 34.615 0.00 0.00 40.11 1.40
3115 3532 6.314018 CGCTTGATGCTACATTTTGAGTTAA 58.686 36.000 0.00 0.00 40.11 2.01
3116 3533 5.163764 CCGCTTGATGCTACATTTTGAGTTA 60.164 40.000 0.00 0.00 40.11 2.24
3117 3534 4.379813 CCGCTTGATGCTACATTTTGAGTT 60.380 41.667 0.00 0.00 40.11 3.01
3118 3535 3.127548 CCGCTTGATGCTACATTTTGAGT 59.872 43.478 0.00 0.00 40.11 3.41
3119 3536 3.374988 TCCGCTTGATGCTACATTTTGAG 59.625 43.478 0.00 0.00 40.11 3.02
3120 3537 3.342719 TCCGCTTGATGCTACATTTTGA 58.657 40.909 0.00 0.00 40.11 2.69
3121 3538 3.763097 TCCGCTTGATGCTACATTTTG 57.237 42.857 0.00 0.00 40.11 2.44
3122 3539 4.881273 TGTATCCGCTTGATGCTACATTTT 59.119 37.500 3.59 0.00 37.04 1.82
3123 3540 4.450976 TGTATCCGCTTGATGCTACATTT 58.549 39.130 3.59 0.00 37.04 2.32
3124 3541 4.071961 TGTATCCGCTTGATGCTACATT 57.928 40.909 3.59 0.00 37.04 2.71
3125 3542 3.751479 TGTATCCGCTTGATGCTACAT 57.249 42.857 3.59 0.00 37.04 2.29
3126 3543 3.535280 TTGTATCCGCTTGATGCTACA 57.465 42.857 3.59 0.00 37.04 2.74
3127 3544 4.094294 TGTTTTGTATCCGCTTGATGCTAC 59.906 41.667 3.59 0.00 37.04 3.58
3128 3545 4.257731 TGTTTTGTATCCGCTTGATGCTA 58.742 39.130 3.59 0.00 37.04 3.49
3129 3546 3.081061 TGTTTTGTATCCGCTTGATGCT 58.919 40.909 3.59 0.00 37.04 3.79
3130 3547 3.485947 TGTTTTGTATCCGCTTGATGC 57.514 42.857 0.00 0.00 36.68 3.91
3131 3548 5.233957 TGATGTTTTGTATCCGCTTGATG 57.766 39.130 0.00 0.00 34.76 3.07
3132 3549 5.589855 TCATGATGTTTTGTATCCGCTTGAT 59.410 36.000 0.00 0.00 37.49 2.57
3133 3550 4.940654 TCATGATGTTTTGTATCCGCTTGA 59.059 37.500 0.00 0.00 0.00 3.02
3134 3551 5.163723 ACTCATGATGTTTTGTATCCGCTTG 60.164 40.000 0.00 0.00 0.00 4.01
3135 3552 4.943705 ACTCATGATGTTTTGTATCCGCTT 59.056 37.500 0.00 0.00 0.00 4.68
3136 3553 4.517285 ACTCATGATGTTTTGTATCCGCT 58.483 39.130 0.00 0.00 0.00 5.52
3137 3554 4.882671 ACTCATGATGTTTTGTATCCGC 57.117 40.909 0.00 0.00 0.00 5.54
3138 3555 7.307396 GGTGATACTCATGATGTTTTGTATCCG 60.307 40.741 19.74 0.00 36.89 4.18
3139 3556 7.041098 GGGTGATACTCATGATGTTTTGTATCC 60.041 40.741 19.74 13.92 36.89 2.59
3140 3557 7.307396 CGGGTGATACTCATGATGTTTTGTATC 60.307 40.741 17.41 17.41 37.69 2.24
3141 3558 6.483307 CGGGTGATACTCATGATGTTTTGTAT 59.517 38.462 0.00 0.00 0.00 2.29
3142 3559 5.815222 CGGGTGATACTCATGATGTTTTGTA 59.185 40.000 0.00 0.00 0.00 2.41
3143 3560 4.635765 CGGGTGATACTCATGATGTTTTGT 59.364 41.667 0.00 0.00 0.00 2.83
3144 3561 4.035558 CCGGGTGATACTCATGATGTTTTG 59.964 45.833 0.00 0.00 0.00 2.44
3145 3562 4.199310 CCGGGTGATACTCATGATGTTTT 58.801 43.478 0.00 0.00 0.00 2.43
3146 3563 3.808728 CCGGGTGATACTCATGATGTTT 58.191 45.455 0.00 0.00 0.00 2.83
3147 3564 2.485479 GCCGGGTGATACTCATGATGTT 60.485 50.000 2.18 0.00 0.00 2.71
3148 3565 1.070758 GCCGGGTGATACTCATGATGT 59.929 52.381 2.18 0.00 0.00 3.06
3149 3566 1.609061 GGCCGGGTGATACTCATGATG 60.609 57.143 2.18 0.00 0.00 3.07
3150 3567 0.687354 GGCCGGGTGATACTCATGAT 59.313 55.000 2.18 0.00 0.00 2.45
3151 3568 0.398522 AGGCCGGGTGATACTCATGA 60.399 55.000 2.18 0.00 0.00 3.07
3152 3569 0.034059 GAGGCCGGGTGATACTCATG 59.966 60.000 2.18 0.00 0.00 3.07
3153 3570 0.105453 AGAGGCCGGGTGATACTCAT 60.105 55.000 2.18 0.00 0.00 2.90
3154 3571 1.043116 CAGAGGCCGGGTGATACTCA 61.043 60.000 2.18 0.00 0.00 3.41
3155 3572 1.742768 CAGAGGCCGGGTGATACTC 59.257 63.158 2.18 0.00 0.00 2.59
3156 3573 2.435693 GCAGAGGCCGGGTGATACT 61.436 63.158 2.18 0.00 0.00 2.12
3157 3574 2.044806 ATGCAGAGGCCGGGTGATAC 62.045 60.000 2.18 0.00 40.13 2.24
3158 3575 0.471022 TATGCAGAGGCCGGGTGATA 60.471 55.000 2.18 0.00 40.13 2.15
3159 3576 1.344953 TTATGCAGAGGCCGGGTGAT 61.345 55.000 2.18 0.00 40.13 3.06
3160 3577 1.992834 TTATGCAGAGGCCGGGTGA 60.993 57.895 2.18 0.00 40.13 4.02
3161 3578 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
3162 3579 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
3163 3580 0.034059 CTAGTTATGCAGAGGCCGGG 59.966 60.000 2.18 0.00 40.13 5.73
3164 3581 0.034059 CCTAGTTATGCAGAGGCCGG 59.966 60.000 0.00 0.00 40.13 6.13
3165 3582 1.040646 TCCTAGTTATGCAGAGGCCG 58.959 55.000 0.00 0.00 40.13 6.13
3166 3583 3.051081 CATCCTAGTTATGCAGAGGCC 57.949 52.381 0.00 0.00 40.13 5.19
3174 3591 2.874701 GGCTGTGTGCATCCTAGTTATG 59.125 50.000 0.00 0.00 45.15 1.90
3175 3592 2.505407 TGGCTGTGTGCATCCTAGTTAT 59.495 45.455 0.00 0.00 45.15 1.89
3176 3593 1.905894 TGGCTGTGTGCATCCTAGTTA 59.094 47.619 0.00 0.00 45.15 2.24
3177 3594 0.692476 TGGCTGTGTGCATCCTAGTT 59.308 50.000 0.00 0.00 45.15 2.24
3178 3595 0.692476 TTGGCTGTGTGCATCCTAGT 59.308 50.000 0.00 0.00 45.15 2.57
3179 3596 1.470098 GTTTGGCTGTGTGCATCCTAG 59.530 52.381 0.00 0.00 45.15 3.02
3180 3597 1.202867 TGTTTGGCTGTGTGCATCCTA 60.203 47.619 0.00 0.00 45.15 2.94
3181 3598 0.467844 TGTTTGGCTGTGTGCATCCT 60.468 50.000 0.00 0.00 45.15 3.24
3182 3599 0.388659 TTGTTTGGCTGTGTGCATCC 59.611 50.000 0.00 0.00 45.15 3.51
3183 3600 1.202394 TGTTGTTTGGCTGTGTGCATC 60.202 47.619 0.00 0.00 45.15 3.91
3184 3601 0.822811 TGTTGTTTGGCTGTGTGCAT 59.177 45.000 0.00 0.00 45.15 3.96
3185 3602 0.605083 TTGTTGTTTGGCTGTGTGCA 59.395 45.000 0.00 0.00 45.15 4.57
3186 3603 1.719600 TTTGTTGTTTGGCTGTGTGC 58.280 45.000 0.00 0.00 41.94 4.57
3187 3604 3.123284 CACTTTTGTTGTTTGGCTGTGTG 59.877 43.478 0.00 0.00 0.00 3.82
3188 3605 3.244044 ACACTTTTGTTGTTTGGCTGTGT 60.244 39.130 0.00 0.00 28.43 3.72
3189 3606 3.123284 CACACTTTTGTTGTTTGGCTGTG 59.877 43.478 0.00 0.00 31.66 3.66
3190 3607 3.244044 ACACACTTTTGTTGTTTGGCTGT 60.244 39.130 0.00 0.00 31.66 4.40
3191 3608 3.324993 ACACACTTTTGTTGTTTGGCTG 58.675 40.909 0.00 0.00 31.66 4.85
3192 3609 3.006323 TGACACACTTTTGTTGTTTGGCT 59.994 39.130 0.00 0.00 31.66 4.75
3193 3610 3.321497 TGACACACTTTTGTTGTTTGGC 58.679 40.909 0.00 0.00 31.66 4.52
3194 3611 5.914085 TTTGACACACTTTTGTTGTTTGG 57.086 34.783 0.00 0.00 31.66 3.28
3195 3612 6.201806 TCCTTTTGACACACTTTTGTTGTTTG 59.798 34.615 0.00 0.00 31.66 2.93
3196 3613 6.284459 TCCTTTTGACACACTTTTGTTGTTT 58.716 32.000 0.00 0.00 31.66 2.83
3197 3614 5.848406 TCCTTTTGACACACTTTTGTTGTT 58.152 33.333 0.00 0.00 31.66 2.83
3198 3615 5.461032 TCCTTTTGACACACTTTTGTTGT 57.539 34.783 0.00 0.00 31.66 3.32
3199 3616 6.777526 TTTCCTTTTGACACACTTTTGTTG 57.222 33.333 0.00 0.00 31.66 3.33
3200 3617 6.989759 ACTTTTCCTTTTGACACACTTTTGTT 59.010 30.769 0.00 0.00 31.66 2.83
3201 3618 6.521162 ACTTTTCCTTTTGACACACTTTTGT 58.479 32.000 0.00 0.00 35.84 2.83
3202 3619 8.432359 GTTACTTTTCCTTTTGACACACTTTTG 58.568 33.333 0.00 0.00 0.00 2.44
3203 3620 8.145122 TGTTACTTTTCCTTTTGACACACTTTT 58.855 29.630 0.00 0.00 0.00 2.27
3204 3621 7.662897 TGTTACTTTTCCTTTTGACACACTTT 58.337 30.769 0.00 0.00 0.00 2.66
3205 3622 7.222000 TGTTACTTTTCCTTTTGACACACTT 57.778 32.000 0.00 0.00 0.00 3.16
3206 3623 6.827586 TGTTACTTTTCCTTTTGACACACT 57.172 33.333 0.00 0.00 0.00 3.55
3207 3624 7.876896 TTTGTTACTTTTCCTTTTGACACAC 57.123 32.000 0.00 0.00 0.00 3.82
3208 3625 8.888579 TTTTTGTTACTTTTCCTTTTGACACA 57.111 26.923 0.00 0.00 0.00 3.72
3209 3626 9.753669 CATTTTTGTTACTTTTCCTTTTGACAC 57.246 29.630 0.00 0.00 0.00 3.67
3210 3627 9.712305 TCATTTTTGTTACTTTTCCTTTTGACA 57.288 25.926 0.00 0.00 0.00 3.58
3217 3634 9.893305 CGACTTATCATTTTTGTTACTTTTCCT 57.107 29.630 0.00 0.00 0.00 3.36
3218 3635 9.887406 TCGACTTATCATTTTTGTTACTTTTCC 57.113 29.630 0.00 0.00 0.00 3.13
3222 3639 9.659830 GTTGTCGACTTATCATTTTTGTTACTT 57.340 29.630 17.92 0.00 0.00 2.24
3223 3640 8.832521 TGTTGTCGACTTATCATTTTTGTTACT 58.167 29.630 17.92 0.00 0.00 2.24
3224 3641 8.996988 TGTTGTCGACTTATCATTTTTGTTAC 57.003 30.769 17.92 0.00 0.00 2.50
3225 3642 8.832521 ACTGTTGTCGACTTATCATTTTTGTTA 58.167 29.630 17.92 0.00 0.00 2.41
3226 3643 7.703328 ACTGTTGTCGACTTATCATTTTTGTT 58.297 30.769 17.92 0.00 0.00 2.83
3227 3644 7.259290 ACTGTTGTCGACTTATCATTTTTGT 57.741 32.000 17.92 2.43 0.00 2.83
3228 3645 8.708742 TCTACTGTTGTCGACTTATCATTTTTG 58.291 33.333 17.92 1.89 0.00 2.44
3229 3646 8.827177 TCTACTGTTGTCGACTTATCATTTTT 57.173 30.769 17.92 0.00 0.00 1.94
3230 3647 8.088981 ACTCTACTGTTGTCGACTTATCATTTT 58.911 33.333 17.92 1.91 0.00 1.82
3231 3648 7.603651 ACTCTACTGTTGTCGACTTATCATTT 58.396 34.615 17.92 3.97 0.00 2.32
3232 3649 7.159322 ACTCTACTGTTGTCGACTTATCATT 57.841 36.000 17.92 7.36 0.00 2.57
3233 3650 6.183360 GGACTCTACTGTTGTCGACTTATCAT 60.183 42.308 17.92 0.72 0.00 2.45
3234 3651 5.123502 GGACTCTACTGTTGTCGACTTATCA 59.876 44.000 17.92 9.30 0.00 2.15
3235 3652 5.354792 AGGACTCTACTGTTGTCGACTTATC 59.645 44.000 17.92 5.15 0.00 1.75
3236 3653 5.254901 AGGACTCTACTGTTGTCGACTTAT 58.745 41.667 17.92 0.52 0.00 1.73
3237 3654 4.649692 AGGACTCTACTGTTGTCGACTTA 58.350 43.478 17.92 1.67 0.00 2.24
3238 3655 3.488363 AGGACTCTACTGTTGTCGACTT 58.512 45.455 17.92 0.00 0.00 3.01
3239 3656 3.143211 AGGACTCTACTGTTGTCGACT 57.857 47.619 17.92 0.00 0.00 4.18
3240 3657 3.750130 TGTAGGACTCTACTGTTGTCGAC 59.250 47.826 9.11 9.11 44.61 4.20
3241 3658 4.011966 TGTAGGACTCTACTGTTGTCGA 57.988 45.455 5.35 0.00 44.61 4.20
3242 3659 4.966965 ATGTAGGACTCTACTGTTGTCG 57.033 45.455 5.35 0.00 44.61 4.35
3243 3660 6.482641 TCGATATGTAGGACTCTACTGTTGTC 59.517 42.308 5.35 0.00 44.61 3.18
3244 3661 6.260493 GTCGATATGTAGGACTCTACTGTTGT 59.740 42.308 0.00 0.00 44.61 3.32
3245 3662 6.260271 TGTCGATATGTAGGACTCTACTGTTG 59.740 42.308 0.00 0.00 44.61 3.33
3246 3663 6.260493 GTGTCGATATGTAGGACTCTACTGTT 59.740 42.308 0.00 0.00 44.61 3.16
3247 3664 5.759273 GTGTCGATATGTAGGACTCTACTGT 59.241 44.000 0.00 0.00 44.61 3.55
3248 3665 5.992829 AGTGTCGATATGTAGGACTCTACTG 59.007 44.000 0.00 0.00 44.61 2.74
3249 3666 6.177310 AGTGTCGATATGTAGGACTCTACT 57.823 41.667 0.00 0.00 44.61 2.57
3250 3667 7.413219 GCATAGTGTCGATATGTAGGACTCTAC 60.413 44.444 6.42 0.00 44.57 2.59
3251 3668 6.594547 GCATAGTGTCGATATGTAGGACTCTA 59.405 42.308 6.42 5.12 39.57 2.43
3252 3669 5.413213 GCATAGTGTCGATATGTAGGACTCT 59.587 44.000 6.42 0.00 37.95 3.24
3253 3670 5.392165 GGCATAGTGTCGATATGTAGGACTC 60.392 48.000 6.42 0.00 33.90 3.36
3254 3671 4.459685 GGCATAGTGTCGATATGTAGGACT 59.540 45.833 6.42 0.00 33.90 3.85
3255 3672 4.459685 AGGCATAGTGTCGATATGTAGGAC 59.540 45.833 6.42 0.00 33.90 3.85
3256 3673 4.663334 AGGCATAGTGTCGATATGTAGGA 58.337 43.478 6.42 0.00 33.90 2.94
3257 3674 6.095580 ACATAGGCATAGTGTCGATATGTAGG 59.904 42.308 6.42 0.00 32.25 3.18
3258 3675 7.089770 ACATAGGCATAGTGTCGATATGTAG 57.910 40.000 6.42 0.00 32.25 2.74
3259 3676 6.657541 TGACATAGGCATAGTGTCGATATGTA 59.342 38.462 12.80 0.00 43.88 2.29
3260 3677 5.476945 TGACATAGGCATAGTGTCGATATGT 59.523 40.000 12.80 4.73 43.88 2.29
3261 3678 5.954335 TGACATAGGCATAGTGTCGATATG 58.046 41.667 12.80 0.00 43.88 1.78
3262 3679 6.590234 TTGACATAGGCATAGTGTCGATAT 57.410 37.500 12.80 0.00 43.88 1.63
3263 3680 6.399639 TTTGACATAGGCATAGTGTCGATA 57.600 37.500 12.80 0.00 43.88 2.92
3264 3681 4.937201 TTGACATAGGCATAGTGTCGAT 57.063 40.909 12.80 0.00 43.88 3.59
3265 3682 4.729227 TTTGACATAGGCATAGTGTCGA 57.271 40.909 12.80 9.88 43.88 4.20
3266 3683 5.794687 TTTTTGACATAGGCATAGTGTCG 57.205 39.130 12.80 0.00 43.88 4.35
3267 3684 6.318648 TCCATTTTTGACATAGGCATAGTGTC 59.681 38.462 11.52 11.52 41.90 3.67
3268 3685 6.186957 TCCATTTTTGACATAGGCATAGTGT 58.813 36.000 0.00 0.00 0.00 3.55
3269 3686 6.238842 CCTCCATTTTTGACATAGGCATAGTG 60.239 42.308 0.00 0.00 0.00 2.74
3270 3687 5.829924 CCTCCATTTTTGACATAGGCATAGT 59.170 40.000 0.00 0.00 0.00 2.12
3271 3688 5.829924 ACCTCCATTTTTGACATAGGCATAG 59.170 40.000 0.00 0.00 0.00 2.23
3272 3689 5.765510 ACCTCCATTTTTGACATAGGCATA 58.234 37.500 0.00 0.00 0.00 3.14
3273 3690 4.613437 ACCTCCATTTTTGACATAGGCAT 58.387 39.130 0.00 0.00 0.00 4.40
3274 3691 4.046286 ACCTCCATTTTTGACATAGGCA 57.954 40.909 0.00 0.00 0.00 4.75
3275 3692 5.437060 TCTACCTCCATTTTTGACATAGGC 58.563 41.667 0.00 0.00 0.00 3.93
3276 3693 6.425114 CGATCTACCTCCATTTTTGACATAGG 59.575 42.308 0.00 0.00 0.00 2.57
3277 3694 7.210174 TCGATCTACCTCCATTTTTGACATAG 58.790 38.462 0.00 0.00 0.00 2.23
3278 3695 7.119709 TCGATCTACCTCCATTTTTGACATA 57.880 36.000 0.00 0.00 0.00 2.29
3279 3696 5.989477 TCGATCTACCTCCATTTTTGACAT 58.011 37.500 0.00 0.00 0.00 3.06
3280 3697 5.414789 TCGATCTACCTCCATTTTTGACA 57.585 39.130 0.00 0.00 0.00 3.58
3281 3698 6.538742 TGAATCGATCTACCTCCATTTTTGAC 59.461 38.462 0.00 0.00 0.00 3.18
3282 3699 6.649155 TGAATCGATCTACCTCCATTTTTGA 58.351 36.000 0.00 0.00 0.00 2.69
3283 3700 6.763135 TCTGAATCGATCTACCTCCATTTTTG 59.237 38.462 0.00 0.00 0.00 2.44
3284 3701 6.889198 TCTGAATCGATCTACCTCCATTTTT 58.111 36.000 0.00 0.00 0.00 1.94
3285 3702 6.463614 CCTCTGAATCGATCTACCTCCATTTT 60.464 42.308 0.00 0.00 0.00 1.82
3286 3703 5.011533 CCTCTGAATCGATCTACCTCCATTT 59.988 44.000 0.00 0.00 0.00 2.32
3287 3704 4.526262 CCTCTGAATCGATCTACCTCCATT 59.474 45.833 0.00 0.00 0.00 3.16
3288 3705 4.085733 CCTCTGAATCGATCTACCTCCAT 58.914 47.826 0.00 0.00 0.00 3.41
3289 3706 3.117474 ACCTCTGAATCGATCTACCTCCA 60.117 47.826 0.00 0.00 0.00 3.86
3290 3707 3.492337 ACCTCTGAATCGATCTACCTCC 58.508 50.000 0.00 0.00 0.00 4.30
3291 3708 6.431543 TCATAACCTCTGAATCGATCTACCTC 59.568 42.308 0.00 0.00 0.00 3.85
3292 3709 6.307776 TCATAACCTCTGAATCGATCTACCT 58.692 40.000 0.00 0.00 0.00 3.08
3293 3710 6.576662 TCATAACCTCTGAATCGATCTACC 57.423 41.667 0.00 0.00 0.00 3.18
3294 3711 6.529829 GCATCATAACCTCTGAATCGATCTAC 59.470 42.308 0.00 0.00 0.00 2.59
3295 3712 6.350528 GGCATCATAACCTCTGAATCGATCTA 60.351 42.308 0.00 0.00 0.00 1.98
3296 3713 5.477510 GCATCATAACCTCTGAATCGATCT 58.522 41.667 0.00 0.00 0.00 2.75
3297 3714 4.629200 GGCATCATAACCTCTGAATCGATC 59.371 45.833 0.00 0.00 0.00 3.69
3298 3715 4.040829 TGGCATCATAACCTCTGAATCGAT 59.959 41.667 0.00 0.00 0.00 3.59
3299 3716 3.387699 TGGCATCATAACCTCTGAATCGA 59.612 43.478 0.00 0.00 0.00 3.59
3300 3717 3.496130 GTGGCATCATAACCTCTGAATCG 59.504 47.826 0.00 0.00 0.00 3.34
3301 3718 3.817647 GGTGGCATCATAACCTCTGAATC 59.182 47.826 0.00 0.00 0.00 2.52
3302 3719 3.435601 GGGTGGCATCATAACCTCTGAAT 60.436 47.826 0.00 0.00 34.24 2.57
3303 3720 2.092429 GGGTGGCATCATAACCTCTGAA 60.092 50.000 0.00 0.00 34.24 3.02
3304 3721 1.490490 GGGTGGCATCATAACCTCTGA 59.510 52.381 0.00 0.00 34.24 3.27
3305 3722 1.212688 TGGGTGGCATCATAACCTCTG 59.787 52.381 0.00 0.00 34.24 3.35
3306 3723 1.595311 TGGGTGGCATCATAACCTCT 58.405 50.000 0.00 0.00 34.24 3.69
3307 3724 2.233271 CATGGGTGGCATCATAACCTC 58.767 52.381 0.00 0.00 34.24 3.85
3308 3725 1.570501 ACATGGGTGGCATCATAACCT 59.429 47.619 0.00 0.00 34.24 3.50
3309 3726 2.071778 ACATGGGTGGCATCATAACC 57.928 50.000 0.00 0.00 0.00 2.85
3310 3727 3.023119 TCAACATGGGTGGCATCATAAC 58.977 45.455 0.00 0.00 0.00 1.89
3311 3728 3.378861 TCAACATGGGTGGCATCATAA 57.621 42.857 0.00 0.00 0.00 1.90
3312 3729 3.378861 TTCAACATGGGTGGCATCATA 57.621 42.857 0.00 0.00 0.00 2.15
3313 3730 2.234896 TTCAACATGGGTGGCATCAT 57.765 45.000 0.00 0.00 0.00 2.45
3314 3731 2.006805 TTTCAACATGGGTGGCATCA 57.993 45.000 0.00 0.00 0.00 3.07
3315 3732 3.399440 TTTTTCAACATGGGTGGCATC 57.601 42.857 0.00 0.00 0.00 3.91
3334 3751 4.307443 GCAGGCGGCTATTAAGATTTTT 57.693 40.909 12.74 0.00 40.25 1.94
3335 3752 3.990318 GCAGGCGGCTATTAAGATTTT 57.010 42.857 12.74 0.00 40.25 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.