Multiple sequence alignment - TraesCS6D01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G093800 chr6D 100.000 6015 0 0 1 6015 58444410 58450424 0.000000e+00 11108.0
1 TraesCS6D01G093800 chr6D 80.963 457 63 18 2078 2520 427493720 427493274 2.080000e-89 340.0
2 TraesCS6D01G093800 chr6D 80.617 454 67 17 2078 2520 427486789 427486346 1.250000e-86 331.0
3 TraesCS6D01G093800 chr6D 80.300 467 69 17 2222 2678 427491295 427490842 1.250000e-86 331.0
4 TraesCS6D01G093800 chr6D 79.947 379 62 11 2078 2449 427965725 427966096 3.570000e-67 267.0
5 TraesCS6D01G093800 chr6D 80.800 250 31 12 3062 3301 427966741 427966983 4.790000e-41 180.0
6 TraesCS6D01G093800 chr6D 91.935 62 5 0 2842 2903 427493045 427492984 2.990000e-13 87.9
7 TraesCS6D01G093800 chr6A 93.475 4521 161 63 120 4565 73637094 73641555 0.000000e+00 6591.0
8 TraesCS6D01G093800 chr6A 87.375 499 32 12 4953 5447 73642109 73642580 1.470000e-150 544.0
9 TraesCS6D01G093800 chr6A 90.765 379 24 7 4553 4927 73641741 73642112 4.190000e-136 496.0
10 TraesCS6D01G093800 chr6A 86.139 303 36 6 2222 2520 572139942 572139642 7.520000e-84 322.0
11 TraesCS6D01G093800 chr6A 76.923 234 27 18 3082 3301 572139161 572138941 2.290000e-19 108.0
12 TraesCS6D01G093800 chr6B 97.095 2823 47 13 1762 4573 130964903 130967701 0.000000e+00 4726.0
13 TraesCS6D01G093800 chr6B 88.117 1439 89 33 407 1781 130963299 130964719 0.000000e+00 1635.0
14 TraesCS6D01G093800 chr6B 94.512 984 35 13 4638 5611 130967927 130968901 0.000000e+00 1500.0
15 TraesCS6D01G093800 chr6B 79.231 1093 145 53 2222 3271 643267233 643266180 0.000000e+00 686.0
16 TraesCS6D01G093800 chr6B 85.855 304 36 6 2222 2520 643430920 643430619 3.500000e-82 316.0
17 TraesCS6D01G093800 chr6B 85.149 303 21 13 91 378 130962721 130963014 7.630000e-74 289.0
18 TraesCS6D01G093800 chr6B 95.000 40 1 1 5976 6015 130968896 130968934 1.810000e-05 62.1
19 TraesCS6D01G093800 chr7A 84.450 373 44 10 5610 5980 47347549 47347909 7.410000e-94 355.0
20 TraesCS6D01G093800 chr5B 81.984 383 57 8 5605 5983 14212265 14211891 1.260000e-81 315.0
21 TraesCS6D01G093800 chr5A 83.429 350 47 7 5607 5953 423664474 423664815 1.260000e-81 315.0
22 TraesCS6D01G093800 chr5A 80.423 378 59 12 5610 5982 264083511 264083144 2.140000e-69 274.0
23 TraesCS6D01G093800 chr3D 82.058 379 44 9 5608 5982 66740381 66740023 9.800000e-78 302.0
24 TraesCS6D01G093800 chr7D 85.156 256 33 4 5610 5865 111218755 111218505 2.150000e-64 257.0
25 TraesCS6D01G093800 chr2D 79.028 391 53 21 5610 5984 83534220 83534597 2.170000e-59 241.0
26 TraesCS6D01G093800 chr1A 83.712 264 33 6 5609 5865 111149465 111149725 2.170000e-59 241.0
27 TraesCS6D01G093800 chr5D 77.975 395 64 17 5607 5986 260675968 260675582 6.070000e-55 226.0
28 TraesCS6D01G093800 chr3B 75.897 390 73 12 5609 5986 549701928 549701548 4.790000e-41 180.0
29 TraesCS6D01G093800 chr3B 84.375 64 8 2 2868 2930 92334036 92333974 1.810000e-05 62.1
30 TraesCS6D01G093800 chr4A 75.258 388 61 22 5610 5985 710205977 710206341 1.040000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G093800 chr6D 58444410 58450424 6014 False 11108.000000 11108 100.000000 1 6015 1 chr6D.!!$F1 6014
1 TraesCS6D01G093800 chr6D 427490842 427493720 2878 True 252.966667 340 84.399333 2078 2903 3 chr6D.!!$R2 825
2 TraesCS6D01G093800 chr6D 427965725 427966983 1258 False 223.500000 267 80.373500 2078 3301 2 chr6D.!!$F2 1223
3 TraesCS6D01G093800 chr6A 73637094 73642580 5486 False 2543.666667 6591 90.538333 120 5447 3 chr6A.!!$F1 5327
4 TraesCS6D01G093800 chr6A 572138941 572139942 1001 True 215.000000 322 81.531000 2222 3301 2 chr6A.!!$R1 1079
5 TraesCS6D01G093800 chr6B 130962721 130968934 6213 False 1642.420000 4726 91.974600 91 6015 5 chr6B.!!$F1 5924
6 TraesCS6D01G093800 chr6B 643266180 643267233 1053 True 686.000000 686 79.231000 2222 3271 1 chr6B.!!$R1 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 403 0.031178 CCAACTCAAACACAGCAGCC 59.969 55.000 0.00 0.00 0.00 4.85 F
393 414 0.178953 ACAGCAGCCAAAACCATCCT 60.179 50.000 0.00 0.00 0.00 3.24 F
1223 1587 0.109342 CAGGCCGGGCTGATTAGAAT 59.891 55.000 45.97 13.84 0.00 2.40 F
1389 1753 0.681175 GAATATGTGGCCCCCATTGC 59.319 55.000 10.01 0.00 35.28 3.56 F
1751 2122 0.804989 CCTTGCGGTTGGCTCTTTAG 59.195 55.000 0.00 0.00 44.05 1.85 F
3634 4648 2.296752 TGGAGACAATGGCACAACAATG 59.703 45.455 0.00 0.00 37.37 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 1587 1.999071 AAAACTGCAACGGCGAGCAA 61.999 50.000 25.58 13.86 45.35 3.91 R
1737 2108 2.415512 GCAGTAACTAAAGAGCCAACCG 59.584 50.000 0.00 0.00 0.00 4.44 R
3030 3759 1.339610 CTCGAGTCAGAGCCATTAGGG 59.660 57.143 3.62 0.00 40.85 3.53 R
3634 4648 2.926838 CGAAAAGCTAGACTCTGCCTTC 59.073 50.000 0.00 1.59 0.00 3.46 R
3967 4982 3.885297 TCTGCAGAGAACCCAAAGAAAAG 59.115 43.478 13.74 0.00 0.00 2.27 R
5663 7418 0.100503 AACACGACCAACAAGCTTGC 59.899 50.000 26.27 8.60 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.670059 ACCTTTTCCCCTCACCTAGG 58.330 55.000 7.41 7.41 46.09 3.02
28 29 2.990066 CCTCACCTAGGGACATGAAC 57.010 55.000 14.81 0.00 42.32 3.18
29 30 1.486726 CCTCACCTAGGGACATGAACC 59.513 57.143 14.81 0.25 42.32 3.62
30 31 2.472029 CTCACCTAGGGACATGAACCT 58.528 52.381 14.81 15.35 40.89 3.50
31 32 2.169352 CTCACCTAGGGACATGAACCTG 59.831 54.545 14.81 8.88 37.72 4.00
32 33 1.210478 CACCTAGGGACATGAACCTGG 59.790 57.143 14.81 16.32 37.72 4.45
33 34 1.203440 ACCTAGGGACATGAACCTGGT 60.203 52.381 14.81 18.76 37.72 4.00
34 35 1.916181 CCTAGGGACATGAACCTGGTT 59.084 52.381 12.82 12.82 37.72 3.67
35 36 2.092914 CCTAGGGACATGAACCTGGTTC 60.093 54.545 28.50 28.50 42.26 3.62
36 37 0.324943 AGGGACATGAACCTGGTTCG 59.675 55.000 28.92 20.11 44.55 3.95
37 38 0.323629 GGGACATGAACCTGGTTCGA 59.676 55.000 28.92 20.15 44.55 3.71
38 39 1.271163 GGGACATGAACCTGGTTCGAA 60.271 52.381 28.92 16.67 44.55 3.71
39 40 2.500229 GGACATGAACCTGGTTCGAAA 58.500 47.619 28.92 16.01 44.55 3.46
40 41 2.225727 GGACATGAACCTGGTTCGAAAC 59.774 50.000 28.92 20.66 44.55 2.78
41 42 3.139077 GACATGAACCTGGTTCGAAACT 58.861 45.455 28.92 13.16 44.55 2.66
42 43 3.551846 ACATGAACCTGGTTCGAAACTT 58.448 40.909 28.92 11.32 44.55 2.66
43 44 3.315191 ACATGAACCTGGTTCGAAACTTG 59.685 43.478 28.92 20.89 44.55 3.16
44 45 3.269538 TGAACCTGGTTCGAAACTTGA 57.730 42.857 28.92 10.77 44.55 3.02
45 46 2.940410 TGAACCTGGTTCGAAACTTGAC 59.060 45.455 28.92 7.68 44.55 3.18
46 47 2.702592 ACCTGGTTCGAAACTTGACA 57.297 45.000 15.41 0.00 0.00 3.58
47 48 2.993937 ACCTGGTTCGAAACTTGACAA 58.006 42.857 15.41 0.00 0.00 3.18
48 49 3.551846 ACCTGGTTCGAAACTTGACAAT 58.448 40.909 15.41 0.00 0.00 2.71
49 50 4.710324 ACCTGGTTCGAAACTTGACAATA 58.290 39.130 15.41 0.00 0.00 1.90
50 51 5.127491 ACCTGGTTCGAAACTTGACAATAA 58.873 37.500 15.41 0.00 0.00 1.40
51 52 5.768164 ACCTGGTTCGAAACTTGACAATAAT 59.232 36.000 15.41 0.00 0.00 1.28
52 53 6.072673 ACCTGGTTCGAAACTTGACAATAATC 60.073 38.462 15.41 0.00 0.00 1.75
53 54 6.072728 CCTGGTTCGAAACTTGACAATAATCA 60.073 38.462 15.41 0.00 0.00 2.57
54 55 7.362056 CCTGGTTCGAAACTTGACAATAATCAT 60.362 37.037 15.41 0.00 0.00 2.45
55 56 8.554835 TGGTTCGAAACTTGACAATAATCATA 57.445 30.769 15.41 0.00 0.00 2.15
56 57 8.447833 TGGTTCGAAACTTGACAATAATCATAC 58.552 33.333 15.41 0.00 0.00 2.39
57 58 8.665685 GGTTCGAAACTTGACAATAATCATACT 58.334 33.333 5.79 0.00 0.00 2.12
58 59 9.690434 GTTCGAAACTTGACAATAATCATACTC 57.310 33.333 0.00 0.00 0.00 2.59
59 60 8.115491 TCGAAACTTGACAATAATCATACTCG 57.885 34.615 0.00 0.00 0.00 4.18
60 61 7.758076 TCGAAACTTGACAATAATCATACTCGT 59.242 33.333 0.00 0.00 0.00 4.18
61 62 9.016623 CGAAACTTGACAATAATCATACTCGTA 57.983 33.333 0.00 0.00 0.00 3.43
65 66 9.647797 ACTTGACAATAATCATACTCGTAAACA 57.352 29.630 0.00 0.00 0.00 2.83
66 67 9.901724 CTTGACAATAATCATACTCGTAAACAC 57.098 33.333 0.00 0.00 0.00 3.32
67 68 9.647797 TTGACAATAATCATACTCGTAAACACT 57.352 29.630 0.00 0.00 0.00 3.55
68 69 9.647797 TGACAATAATCATACTCGTAAACACTT 57.352 29.630 0.00 0.00 0.00 3.16
77 78 9.016623 TCATACTCGTAAACACTTTATTGATCG 57.983 33.333 0.00 0.00 0.00 3.69
78 79 6.091123 ACTCGTAAACACTTTATTGATCGC 57.909 37.500 0.00 0.00 0.00 4.58
79 80 5.063060 ACTCGTAAACACTTTATTGATCGCC 59.937 40.000 0.00 0.00 0.00 5.54
80 81 5.172934 TCGTAAACACTTTATTGATCGCCT 58.827 37.500 0.00 0.00 0.00 5.52
81 82 5.062934 TCGTAAACACTTTATTGATCGCCTG 59.937 40.000 0.00 0.00 0.00 4.85
82 83 3.764885 AACACTTTATTGATCGCCTGC 57.235 42.857 0.00 0.00 0.00 4.85
83 84 2.710377 ACACTTTATTGATCGCCTGCA 58.290 42.857 0.00 0.00 0.00 4.41
84 85 2.679837 ACACTTTATTGATCGCCTGCAG 59.320 45.455 6.78 6.78 0.00 4.41
85 86 2.032550 CACTTTATTGATCGCCTGCAGG 59.967 50.000 29.34 29.34 38.53 4.85
218 224 2.859165 TGCAGGAGGTTCGATCTTTT 57.141 45.000 0.00 0.00 0.00 2.27
269 287 2.946990 TCCAGTCGGAAACAAAAACCTC 59.053 45.455 0.00 0.00 38.83 3.85
285 303 1.709147 CCTCGGGCATGCTTTTCTCG 61.709 60.000 18.92 11.76 0.00 4.04
298 316 3.735746 GCTTTTCTCGTGTTTTTCCATGG 59.264 43.478 4.97 4.97 0.00 3.66
337 358 5.250200 TGCGTTTCTATCCACTTTAACCAT 58.750 37.500 0.00 0.00 0.00 3.55
338 359 5.708230 TGCGTTTCTATCCACTTTAACCATT 59.292 36.000 0.00 0.00 0.00 3.16
339 360 6.128117 TGCGTTTCTATCCACTTTAACCATTC 60.128 38.462 0.00 0.00 0.00 2.67
340 361 6.093633 GCGTTTCTATCCACTTTAACCATTCT 59.906 38.462 0.00 0.00 0.00 2.40
341 362 7.361799 GCGTTTCTATCCACTTTAACCATTCTT 60.362 37.037 0.00 0.00 0.00 2.52
342 363 7.962918 CGTTTCTATCCACTTTAACCATTCTTG 59.037 37.037 0.00 0.00 0.00 3.02
343 364 9.010029 GTTTCTATCCACTTTAACCATTCTTGA 57.990 33.333 0.00 0.00 0.00 3.02
382 403 0.031178 CCAACTCAAACACAGCAGCC 59.969 55.000 0.00 0.00 0.00 4.85
387 408 2.195922 CTCAAACACAGCAGCCAAAAC 58.804 47.619 0.00 0.00 0.00 2.43
389 410 0.901124 AAACACAGCAGCCAAAACCA 59.099 45.000 0.00 0.00 0.00 3.67
390 411 1.122227 AACACAGCAGCCAAAACCAT 58.878 45.000 0.00 0.00 0.00 3.55
391 412 0.675633 ACACAGCAGCCAAAACCATC 59.324 50.000 0.00 0.00 0.00 3.51
393 414 0.178953 ACAGCAGCCAAAACCATCCT 60.179 50.000 0.00 0.00 0.00 3.24
394 415 0.971386 CAGCAGCCAAAACCATCCTT 59.029 50.000 0.00 0.00 0.00 3.36
432 709 1.267532 GCAAGCATATCGGACACAACG 60.268 52.381 0.00 0.00 0.00 4.10
433 710 1.006832 AAGCATATCGGACACAACGC 58.993 50.000 0.00 0.00 0.00 4.84
463 740 4.270325 GTCAGATAACGTGTTTATGGGAGC 59.730 45.833 0.00 0.00 29.85 4.70
464 741 3.560068 CAGATAACGTGTTTATGGGAGCC 59.440 47.826 0.00 0.00 29.85 4.70
465 742 3.199071 AGATAACGTGTTTATGGGAGCCA 59.801 43.478 0.00 0.00 38.19 4.75
536 836 3.420482 CCTCCCACCACCATCCCC 61.420 72.222 0.00 0.00 0.00 4.81
537 837 2.613696 CTCCCACCACCATCCCCA 60.614 66.667 0.00 0.00 0.00 4.96
538 838 2.008723 CTCCCACCACCATCCCCAT 61.009 63.158 0.00 0.00 0.00 4.00
539 839 1.999634 CTCCCACCACCATCCCCATC 62.000 65.000 0.00 0.00 0.00 3.51
540 840 2.603008 CCACCACCATCCCCATCC 59.397 66.667 0.00 0.00 0.00 3.51
541 841 2.603008 CACCACCATCCCCATCCC 59.397 66.667 0.00 0.00 0.00 3.85
752 1070 1.448717 GTCAGCGCTTCCTTCCCTC 60.449 63.158 7.50 0.00 0.00 4.30
781 1099 3.864686 GCCGAGGTACGTACGCGA 61.865 66.667 29.29 0.00 42.00 5.87
882 1211 2.731691 TTCCTTTCTCGCCGCTGCTT 62.732 55.000 0.00 0.00 34.43 3.91
969 1299 2.358737 GGGTTGGTGTCGCAGGAG 60.359 66.667 0.00 0.00 0.00 3.69
973 1303 1.533033 TTGGTGTCGCAGGAGAGGA 60.533 57.895 0.00 0.00 0.00 3.71
1110 1462 4.615912 CGGTTTCCTCTTCGCATGATTTTT 60.616 41.667 0.00 0.00 0.00 1.94
1199 1563 3.756933 AAGTCTTTAGGTTGTGCGGTA 57.243 42.857 0.00 0.00 0.00 4.02
1223 1587 0.109342 CAGGCCGGGCTGATTAGAAT 59.891 55.000 45.97 13.84 0.00 2.40
1228 1592 1.876156 CCGGGCTGATTAGAATTGCTC 59.124 52.381 0.00 0.00 0.00 4.26
1389 1753 0.681175 GAATATGTGGCCCCCATTGC 59.319 55.000 10.01 0.00 35.28 3.56
1394 1758 2.759149 TGGCCCCCATTGCAATCG 60.759 61.111 9.53 2.37 0.00 3.34
1404 1771 2.159476 CCATTGCAATCGACTGAACTGG 60.159 50.000 9.53 0.00 0.00 4.00
1458 1825 6.569179 TTATGATATCTGATCGGTCGTCAA 57.431 37.500 3.98 0.00 0.00 3.18
1465 1832 2.915463 CTGATCGGTCGTCAACTACAAC 59.085 50.000 0.00 0.00 0.00 3.32
1480 1847 8.395633 GTCAACTACAACTAGTCAAATTTGTGT 58.604 33.333 17.47 14.74 34.15 3.72
1488 1855 9.169468 CAACTAGTCAAATTTGTGTGTGATTAC 57.831 33.333 17.47 5.55 0.00 1.89
1565 1934 6.023435 TCTTCAGAATTCGAAATTCATTGCG 58.977 36.000 0.00 0.00 40.16 4.85
1568 1937 4.324135 CAGAATTCGAAATTCATTGCGCAA 59.676 37.500 27.24 27.24 38.69 4.85
1672 2043 1.954382 TCGCACTGACTACACACTCTT 59.046 47.619 0.00 0.00 0.00 2.85
1675 2046 3.458189 GCACTGACTACACACTCTTGTT 58.542 45.455 0.00 0.00 31.66 2.83
1737 2108 3.531538 TCGATGTCATTTCCTACCTTGC 58.468 45.455 0.00 0.00 0.00 4.01
1751 2122 0.804989 CCTTGCGGTTGGCTCTTTAG 59.195 55.000 0.00 0.00 44.05 1.85
1772 2143 3.498397 AGTTACTGCCATTTTCACAGACG 59.502 43.478 0.00 0.00 35.38 4.18
1792 2366 7.368059 CAGACGTATATCTGCCTTGTTATGTA 58.632 38.462 0.00 0.00 39.77 2.29
1915 2489 8.674263 ACTGGAATTTCTTTGCATCTAGATAG 57.326 34.615 4.54 0.00 34.90 2.08
1928 2506 9.770097 TTGCATCTAGATAGGATTCTTTGTTAG 57.230 33.333 4.54 0.00 0.00 2.34
2381 2978 6.469782 ACCTTGTCACAGAATGAAAACATT 57.530 33.333 0.00 0.00 39.72 2.71
2401 2999 8.630054 AACATTACCAGCTCTATGTTTTTGTA 57.370 30.769 6.49 0.00 37.82 2.41
2463 3061 4.711846 AGTTTCCCCATCCTTGAATAAAGC 59.288 41.667 0.00 0.00 34.24 3.51
2603 3288 5.301551 TGTGTCAAAGTAAATTCCATGCTGT 59.698 36.000 0.00 0.00 0.00 4.40
2907 3628 5.823045 TGAAGAAGAGAACCCTGAGTTTTTC 59.177 40.000 0.00 0.00 39.40 2.29
3030 3759 2.688446 GCTTTCAATTACCCCTACTGCC 59.312 50.000 0.00 0.00 0.00 4.85
3634 4648 2.296752 TGGAGACAATGGCACAACAATG 59.703 45.455 0.00 0.00 37.37 2.82
4068 5083 1.474879 GAGTCTACTGCTGGAGGACAC 59.525 57.143 2.59 0.00 0.00 3.67
4457 5596 5.469421 TGGTGTAAATGGTTAACCTACAACG 59.531 40.000 24.49 0.00 35.70 4.10
4468 5607 3.286329 ACCTACAACGGACCTTGTTTT 57.714 42.857 12.60 0.00 35.87 2.43
4506 5645 6.209192 TGAAATCTGTACTGGCACATTCAATT 59.791 34.615 0.00 0.00 38.20 2.32
4508 5647 3.758023 TCTGTACTGGCACATTCAATTGG 59.242 43.478 5.42 0.00 38.20 3.16
4516 5655 5.263599 TGGCACATTCAATTGGTATCTTCT 58.736 37.500 5.42 0.00 0.00 2.85
4629 6036 2.210116 CATTAGTCGTTATGCGGGCTT 58.790 47.619 0.00 0.00 41.72 4.35
4654 6402 9.787435 TTGGTAGTTAGTACATCAGAACAAAAT 57.213 29.630 0.00 0.00 32.62 1.82
4708 6456 5.882557 ACTGTGAAAACTGGATGATATGACC 59.117 40.000 0.00 0.00 0.00 4.02
4709 6457 6.065976 TGTGAAAACTGGATGATATGACCT 57.934 37.500 0.00 0.00 0.00 3.85
4710 6458 6.484288 TGTGAAAACTGGATGATATGACCTT 58.516 36.000 0.00 0.00 0.00 3.50
4711 6459 6.947733 TGTGAAAACTGGATGATATGACCTTT 59.052 34.615 0.00 0.00 0.00 3.11
4712 6460 8.106462 TGTGAAAACTGGATGATATGACCTTTA 58.894 33.333 0.00 0.00 0.00 1.85
5023 6771 4.058124 TGTGTGCAGTTTGAGTAGTGATC 58.942 43.478 0.00 0.00 0.00 2.92
5113 6861 0.653636 TGCGGAAACTGTTCGTTGTC 59.346 50.000 0.00 0.00 35.61 3.18
5248 6996 1.795951 TAGGTTTGGTTGGAGCCCCC 61.796 60.000 0.00 0.00 0.00 5.40
5319 7067 7.119846 AGTGTTCTTAACTGATGCTTATGGTTC 59.880 37.037 0.00 0.00 0.00 3.62
5379 7128 7.035840 ACGAAGATTATTAGTCGCCTCTTTA 57.964 36.000 0.00 0.00 36.99 1.85
5380 7129 7.486647 ACGAAGATTATTAGTCGCCTCTTTAA 58.513 34.615 0.00 0.00 36.99 1.52
5381 7130 7.648510 ACGAAGATTATTAGTCGCCTCTTTAAG 59.351 37.037 0.00 0.00 36.99 1.85
5438 7190 2.892374 TGACGGACTGCTGTTATGATG 58.108 47.619 0.00 0.00 32.58 3.07
5482 7234 4.019231 ACTGGTCTTTATTTCCCCTCTCAC 60.019 45.833 0.00 0.00 0.00 3.51
5531 7283 7.649370 ATCATCAAAGCATACGACAATAGAG 57.351 36.000 0.00 0.00 0.00 2.43
5575 7330 4.383552 CCAGAGAGGGTGAAGAATAAGTGG 60.384 50.000 0.00 0.00 0.00 4.00
5625 7380 8.929487 AGAGCTCACTATTAAACCTATTAAGCT 58.071 33.333 17.77 0.00 0.00 3.74
5627 7382 9.984190 AGCTCACTATTAAACCTATTAAGCTAC 57.016 33.333 0.00 0.00 0.00 3.58
5628 7383 9.760077 GCTCACTATTAAACCTATTAAGCTACA 57.240 33.333 0.00 0.00 0.00 2.74
5630 7385 9.740239 TCACTATTAAACCTATTAAGCTACACG 57.260 33.333 0.00 0.00 0.00 4.49
5631 7386 9.525409 CACTATTAAACCTATTAAGCTACACGT 57.475 33.333 0.00 0.00 0.00 4.49
5632 7387 9.525409 ACTATTAAACCTATTAAGCTACACGTG 57.475 33.333 15.48 15.48 0.00 4.49
5633 7388 9.740239 CTATTAAACCTATTAAGCTACACGTGA 57.260 33.333 25.01 4.97 0.00 4.35
5635 7390 6.963049 AAACCTATTAAGCTACACGTGAAG 57.037 37.500 25.01 0.00 0.00 3.02
5636 7391 5.007385 ACCTATTAAGCTACACGTGAAGG 57.993 43.478 25.01 14.77 0.00 3.46
5637 7392 4.708421 ACCTATTAAGCTACACGTGAAGGA 59.292 41.667 25.01 3.26 0.00 3.36
5638 7393 5.041940 CCTATTAAGCTACACGTGAAGGAC 58.958 45.833 25.01 6.63 0.00 3.85
5646 7401 3.047877 CGTGAAGGACGGCCAACC 61.048 66.667 11.69 5.15 44.85 3.77
5647 7402 2.112297 GTGAAGGACGGCCAACCA 59.888 61.111 11.69 0.00 36.29 3.67
5648 7403 1.966451 GTGAAGGACGGCCAACCAG 60.966 63.158 11.69 0.00 36.29 4.00
5649 7404 3.056328 GAAGGACGGCCAACCAGC 61.056 66.667 11.69 5.12 36.29 4.85
5650 7405 3.553095 GAAGGACGGCCAACCAGCT 62.553 63.158 11.69 1.95 36.29 4.24
5651 7406 2.180159 GAAGGACGGCCAACCAGCTA 62.180 60.000 11.69 0.00 36.29 3.32
5652 7407 1.562672 AAGGACGGCCAACCAGCTAT 61.563 55.000 11.69 0.00 36.29 2.97
5653 7408 1.819632 GGACGGCCAACCAGCTATG 60.820 63.158 0.00 0.00 34.57 2.23
5654 7409 2.438434 ACGGCCAACCAGCTATGC 60.438 61.111 2.24 0.00 34.57 3.14
5655 7410 3.211963 CGGCCAACCAGCTATGCC 61.212 66.667 2.24 0.00 38.74 4.40
5656 7411 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
5657 7412 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
5658 7413 2.764314 GCCAACCAGCTATGCCACG 61.764 63.158 0.00 0.00 0.00 4.94
5659 7414 1.377202 CCAACCAGCTATGCCACGT 60.377 57.895 0.00 0.00 0.00 4.49
5660 7415 1.647545 CCAACCAGCTATGCCACGTG 61.648 60.000 9.08 9.08 0.00 4.49
5661 7416 1.377202 AACCAGCTATGCCACGTGG 60.377 57.895 30.66 30.66 38.53 4.94
5679 7434 3.022287 CGCAAGCTTGTTGGTCGT 58.978 55.556 26.55 0.00 0.00 4.34
5680 7435 1.369209 CGCAAGCTTGTTGGTCGTG 60.369 57.895 26.55 2.60 0.00 4.35
5681 7436 1.727467 GCAAGCTTGTTGGTCGTGT 59.273 52.632 26.55 0.00 0.00 4.49
5682 7437 0.100503 GCAAGCTTGTTGGTCGTGTT 59.899 50.000 26.55 0.00 0.00 3.32
5683 7438 1.826327 CAAGCTTGTTGGTCGTGTTG 58.174 50.000 18.65 0.00 0.00 3.33
5684 7439 1.400142 CAAGCTTGTTGGTCGTGTTGA 59.600 47.619 18.65 0.00 0.00 3.18
5685 7440 1.745232 AGCTTGTTGGTCGTGTTGAA 58.255 45.000 0.00 0.00 0.00 2.69
5686 7441 2.088423 AGCTTGTTGGTCGTGTTGAAA 58.912 42.857 0.00 0.00 0.00 2.69
5687 7442 2.490115 AGCTTGTTGGTCGTGTTGAAAA 59.510 40.909 0.00 0.00 0.00 2.29
5688 7443 3.057174 AGCTTGTTGGTCGTGTTGAAAAA 60.057 39.130 0.00 0.00 0.00 1.94
5689 7444 3.303229 GCTTGTTGGTCGTGTTGAAAAAG 59.697 43.478 0.00 0.00 0.00 2.27
5690 7445 2.869897 TGTTGGTCGTGTTGAAAAAGC 58.130 42.857 0.00 0.00 0.00 3.51
5691 7446 2.490115 TGTTGGTCGTGTTGAAAAAGCT 59.510 40.909 0.00 0.00 0.00 3.74
5692 7447 3.057174 TGTTGGTCGTGTTGAAAAAGCTT 60.057 39.130 0.00 0.00 0.00 3.74
5693 7448 3.859411 TGGTCGTGTTGAAAAAGCTTT 57.141 38.095 5.69 5.69 0.00 3.51
5694 7449 4.181309 TGGTCGTGTTGAAAAAGCTTTT 57.819 36.364 18.74 18.74 0.00 2.27
5695 7450 3.923461 TGGTCGTGTTGAAAAAGCTTTTG 59.077 39.130 24.50 10.57 0.00 2.44
5696 7451 4.170256 GGTCGTGTTGAAAAAGCTTTTGA 58.830 39.130 24.50 12.67 0.00 2.69
5697 7452 4.623595 GGTCGTGTTGAAAAAGCTTTTGAA 59.376 37.500 24.50 16.85 0.00 2.69
5698 7453 5.290885 GGTCGTGTTGAAAAAGCTTTTGAAT 59.709 36.000 24.50 9.73 0.00 2.57
5699 7454 6.474102 GGTCGTGTTGAAAAAGCTTTTGAATA 59.526 34.615 24.50 15.17 0.00 1.75
5700 7455 7.169140 GGTCGTGTTGAAAAAGCTTTTGAATAT 59.831 33.333 24.50 8.96 0.00 1.28
5701 7456 8.539674 GTCGTGTTGAAAAAGCTTTTGAATATT 58.460 29.630 24.50 8.21 0.00 1.28
5702 7457 9.737427 TCGTGTTGAAAAAGCTTTTGAATATTA 57.263 25.926 24.50 3.19 0.00 0.98
5756 7511 8.463930 AAATGTCTTTTAGATGAAGGTGTTGA 57.536 30.769 0.00 0.00 0.00 3.18
5757 7512 6.861065 TGTCTTTTAGATGAAGGTGTTGAC 57.139 37.500 0.00 0.00 0.00 3.18
5758 7513 5.763204 TGTCTTTTAGATGAAGGTGTTGACC 59.237 40.000 0.00 0.00 43.52 4.02
5788 7543 0.530288 TTTTAAATGGAGGGCTGCGC 59.470 50.000 8.86 8.86 0.00 6.09
5789 7544 0.610509 TTTAAATGGAGGGCTGCGCA 60.611 50.000 19.22 10.98 0.00 6.09
5790 7545 0.610509 TTAAATGGAGGGCTGCGCAA 60.611 50.000 19.22 4.43 0.00 4.85
5791 7546 0.610509 TAAATGGAGGGCTGCGCAAA 60.611 50.000 19.22 4.07 0.00 3.68
5792 7547 1.880819 AAATGGAGGGCTGCGCAAAG 61.881 55.000 19.22 0.81 0.00 2.77
5793 7548 3.574074 ATGGAGGGCTGCGCAAAGT 62.574 57.895 19.22 0.00 0.00 2.66
5794 7549 3.741476 GGAGGGCTGCGCAAAGTG 61.741 66.667 19.22 0.00 0.00 3.16
5795 7550 3.741476 GAGGGCTGCGCAAAGTGG 61.741 66.667 19.22 0.00 0.00 4.00
5804 7559 2.253452 GCAAAGTGGCGAGTGCTG 59.747 61.111 0.00 0.00 42.25 4.41
5805 7560 2.949106 CAAAGTGGCGAGTGCTGG 59.051 61.111 0.00 0.00 42.25 4.85
5806 7561 1.893808 CAAAGTGGCGAGTGCTGGT 60.894 57.895 0.00 0.00 42.25 4.00
5807 7562 0.602638 CAAAGTGGCGAGTGCTGGTA 60.603 55.000 0.00 0.00 42.25 3.25
5808 7563 0.320771 AAAGTGGCGAGTGCTGGTAG 60.321 55.000 0.00 0.00 42.25 3.18
5809 7564 2.125512 GTGGCGAGTGCTGGTAGG 60.126 66.667 0.00 0.00 42.25 3.18
5810 7565 4.082523 TGGCGAGTGCTGGTAGGC 62.083 66.667 0.00 0.00 42.25 3.93
5811 7566 4.840005 GGCGAGTGCTGGTAGGCC 62.840 72.222 0.00 0.00 42.25 5.19
5813 7568 3.760035 CGAGTGCTGGTAGGCCGT 61.760 66.667 0.00 0.00 37.67 5.68
5814 7569 2.125512 GAGTGCTGGTAGGCCGTG 60.126 66.667 0.00 0.00 37.67 4.94
5815 7570 2.923035 AGTGCTGGTAGGCCGTGT 60.923 61.111 0.00 0.00 37.67 4.49
5816 7571 2.032071 GTGCTGGTAGGCCGTGTT 59.968 61.111 0.00 0.00 37.67 3.32
5817 7572 2.031919 TGCTGGTAGGCCGTGTTG 59.968 61.111 0.00 0.00 37.67 3.33
5818 7573 2.746277 GCTGGTAGGCCGTGTTGG 60.746 66.667 0.00 0.00 42.50 3.77
5821 7576 2.107041 CTGGTAGGCCGTGTTGGTGA 62.107 60.000 0.00 0.00 41.21 4.02
5823 7578 0.743345 GGTAGGCCGTGTTGGTGATC 60.743 60.000 0.00 0.00 41.21 2.92
5824 7579 0.249398 GTAGGCCGTGTTGGTGATCT 59.751 55.000 0.00 0.00 41.21 2.75
5835 7590 6.265577 CGTGTTGGTGATCTTTTCTTTTCTT 58.734 36.000 0.00 0.00 0.00 2.52
5837 7592 7.275560 CGTGTTGGTGATCTTTTCTTTTCTTTT 59.724 33.333 0.00 0.00 0.00 2.27
5862 7617 9.862149 TTTTTACTTCTTTTTCTAGATGGAGGT 57.138 29.630 0.00 0.00 0.00 3.85
5863 7618 8.848474 TTTACTTCTTTTTCTAGATGGAGGTG 57.152 34.615 0.00 0.00 0.00 4.00
5865 7620 7.264294 ACTTCTTTTTCTAGATGGAGGTGAT 57.736 36.000 0.00 0.00 0.00 3.06
5866 7621 7.108847 ACTTCTTTTTCTAGATGGAGGTGATG 58.891 38.462 0.00 0.00 0.00 3.07
5868 7623 7.020827 TCTTTTTCTAGATGGAGGTGATGTT 57.979 36.000 0.00 0.00 0.00 2.71
5869 7624 7.461749 TCTTTTTCTAGATGGAGGTGATGTTT 58.538 34.615 0.00 0.00 0.00 2.83
5870 7625 8.602424 TCTTTTTCTAGATGGAGGTGATGTTTA 58.398 33.333 0.00 0.00 0.00 2.01
5873 7628 9.581289 TTTTCTAGATGGAGGTGATGTTTAAAA 57.419 29.630 0.00 0.00 0.00 1.52
5874 7629 9.581289 TTTCTAGATGGAGGTGATGTTTAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
5900 7655 8.986929 AAATATTTTCCTAGATGAAGGTGAGG 57.013 34.615 0.00 0.00 37.91 3.86
5901 7656 7.937700 ATATTTTCCTAGATGAAGGTGAGGA 57.062 36.000 0.00 0.00 37.91 3.71
5902 7657 5.422214 TTTTCCTAGATGAAGGTGAGGAC 57.578 43.478 0.00 0.00 36.04 3.85
5904 7659 5.467668 TTCCTAGATGAAGGTGAGGACTA 57.532 43.478 0.00 0.00 36.04 2.59
5905 7660 4.794334 TCCTAGATGAAGGTGAGGACTAC 58.206 47.826 0.00 0.00 37.91 2.73
5907 7662 5.103473 TCCTAGATGAAGGTGAGGACTACAT 60.103 44.000 0.00 0.00 37.91 2.29
5908 7663 5.010516 CCTAGATGAAGGTGAGGACTACATG 59.989 48.000 0.00 0.00 31.46 3.21
5909 7664 4.357325 AGATGAAGGTGAGGACTACATGT 58.643 43.478 2.69 2.69 0.00 3.21
5910 7665 5.519808 AGATGAAGGTGAGGACTACATGTA 58.480 41.667 5.25 5.25 0.00 2.29
5911 7666 5.361285 AGATGAAGGTGAGGACTACATGTAC 59.639 44.000 0.08 0.00 0.00 2.90
5913 7668 5.084519 TGAAGGTGAGGACTACATGTACTT 58.915 41.667 0.08 1.19 40.64 2.24
5914 7669 5.542635 TGAAGGTGAGGACTACATGTACTTT 59.457 40.000 0.08 0.00 40.64 2.66
5915 7670 6.042781 TGAAGGTGAGGACTACATGTACTTTT 59.957 38.462 0.08 0.00 40.64 2.27
5935 7690 4.995365 TTTTAAGTAAAAACGTGCGCAC 57.005 36.364 30.42 30.42 32.05 5.34
5937 7692 2.546195 AAGTAAAAACGTGCGCACAA 57.454 40.000 37.03 14.01 0.00 3.33
5939 7694 3.073144 AGTAAAAACGTGCGCACAATT 57.927 38.095 37.03 27.50 0.00 2.32
5940 7695 3.440228 AGTAAAAACGTGCGCACAATTT 58.560 36.364 37.03 30.90 0.00 1.82
5941 7696 3.860536 AGTAAAAACGTGCGCACAATTTT 59.139 34.783 35.23 35.23 34.90 1.82
5942 7697 2.988807 AAAACGTGCGCACAATTTTC 57.011 40.000 37.03 11.60 28.82 2.29
5943 7698 2.202295 AAACGTGCGCACAATTTTCT 57.798 40.000 37.03 14.96 0.00 2.52
5945 7700 0.944386 ACGTGCGCACAATTTTCTCT 59.056 45.000 37.03 7.04 0.00 3.10
5946 7701 1.069906 ACGTGCGCACAATTTTCTCTC 60.070 47.619 37.03 8.73 0.00 3.20
5947 7702 1.069973 CGTGCGCACAATTTTCTCTCA 60.070 47.619 37.03 0.00 0.00 3.27
5949 7704 2.975851 GTGCGCACAATTTTCTCTCAAG 59.024 45.455 34.52 0.00 0.00 3.02
5950 7705 1.981533 GCGCACAATTTTCTCTCAAGC 59.018 47.619 0.30 0.00 0.00 4.01
5951 7706 2.236690 CGCACAATTTTCTCTCAAGCG 58.763 47.619 0.00 0.00 36.62 4.68
5952 7707 2.589014 GCACAATTTTCTCTCAAGCGG 58.411 47.619 0.00 0.00 0.00 5.52
5953 7708 2.589014 CACAATTTTCTCTCAAGCGGC 58.411 47.619 0.00 0.00 0.00 6.53
5954 7709 1.197721 ACAATTTTCTCTCAAGCGGCG 59.802 47.619 0.51 0.51 0.00 6.46
5955 7710 0.169009 AATTTTCTCTCAAGCGGCGC 59.831 50.000 26.86 26.86 0.00 6.53
5956 7711 1.648467 ATTTTCTCTCAAGCGGCGCC 61.648 55.000 30.40 19.07 0.00 6.53
5957 7712 3.529341 TTTCTCTCAAGCGGCGCCA 62.529 57.895 30.40 12.20 0.00 5.69
5958 7713 4.742201 TCTCTCAAGCGGCGCCAC 62.742 66.667 30.40 18.62 0.00 5.01
5980 7735 4.028490 TGGCGCCCCAACCACTAG 62.028 66.667 26.77 0.00 38.46 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.486726 GGTTCATGTCCCTAGGTGAGG 59.513 57.143 8.29 0.00 46.25 3.86
10 11 2.169352 CAGGTTCATGTCCCTAGGTGAG 59.831 54.545 8.29 0.00 0.00 3.51
11 12 2.187958 CAGGTTCATGTCCCTAGGTGA 58.812 52.381 8.29 1.46 0.00 4.02
12 13 1.210478 CCAGGTTCATGTCCCTAGGTG 59.790 57.143 8.29 0.00 0.00 4.00
13 14 1.203440 ACCAGGTTCATGTCCCTAGGT 60.203 52.381 8.29 15.05 31.52 3.08
14 15 1.584724 ACCAGGTTCATGTCCCTAGG 58.415 55.000 0.06 0.06 0.00 3.02
15 16 2.418746 CGAACCAGGTTCATGTCCCTAG 60.419 54.545 28.47 8.17 42.05 3.02
16 17 1.553248 CGAACCAGGTTCATGTCCCTA 59.447 52.381 28.47 0.00 42.05 3.53
17 18 0.324943 CGAACCAGGTTCATGTCCCT 59.675 55.000 28.47 0.00 42.05 4.20
18 19 0.323629 TCGAACCAGGTTCATGTCCC 59.676 55.000 28.47 4.17 42.05 4.46
19 20 2.178912 TTCGAACCAGGTTCATGTCC 57.821 50.000 28.47 4.88 42.05 4.02
20 21 3.139077 AGTTTCGAACCAGGTTCATGTC 58.861 45.455 28.47 16.61 42.05 3.06
21 22 3.208747 AGTTTCGAACCAGGTTCATGT 57.791 42.857 28.47 8.21 42.05 3.21
22 23 3.563808 TCAAGTTTCGAACCAGGTTCATG 59.436 43.478 28.47 15.41 42.05 3.07
23 24 3.564225 GTCAAGTTTCGAACCAGGTTCAT 59.436 43.478 28.47 8.74 42.05 2.57
24 25 2.940410 GTCAAGTTTCGAACCAGGTTCA 59.060 45.455 28.47 14.94 42.05 3.18
25 26 2.940410 TGTCAAGTTTCGAACCAGGTTC 59.060 45.455 21.18 21.18 38.97 3.62
26 27 2.993937 TGTCAAGTTTCGAACCAGGTT 58.006 42.857 3.79 3.79 0.00 3.50
27 28 2.702592 TGTCAAGTTTCGAACCAGGT 57.297 45.000 0.00 0.00 0.00 4.00
28 29 5.682943 TTATTGTCAAGTTTCGAACCAGG 57.317 39.130 0.00 0.00 0.00 4.45
29 30 6.898041 TGATTATTGTCAAGTTTCGAACCAG 58.102 36.000 0.00 0.00 0.00 4.00
30 31 6.869315 TGATTATTGTCAAGTTTCGAACCA 57.131 33.333 0.00 0.00 0.00 3.67
31 32 8.665685 AGTATGATTATTGTCAAGTTTCGAACC 58.334 33.333 0.00 0.00 0.00 3.62
32 33 9.690434 GAGTATGATTATTGTCAAGTTTCGAAC 57.310 33.333 0.00 0.00 0.00 3.95
33 34 8.592155 CGAGTATGATTATTGTCAAGTTTCGAA 58.408 33.333 0.00 0.00 30.47 3.71
34 35 7.758076 ACGAGTATGATTATTGTCAAGTTTCGA 59.242 33.333 0.00 0.00 31.92 3.71
35 36 7.895870 ACGAGTATGATTATTGTCAAGTTTCG 58.104 34.615 0.00 0.00 32.81 3.46
39 40 9.647797 TGTTTACGAGTATGATTATTGTCAAGT 57.352 29.630 0.00 0.00 0.00 3.16
40 41 9.901724 GTGTTTACGAGTATGATTATTGTCAAG 57.098 33.333 0.00 0.00 0.00 3.02
41 42 9.647797 AGTGTTTACGAGTATGATTATTGTCAA 57.352 29.630 0.00 0.00 0.00 3.18
42 43 9.647797 AAGTGTTTACGAGTATGATTATTGTCA 57.352 29.630 0.00 0.00 0.00 3.58
51 52 9.016623 CGATCAATAAAGTGTTTACGAGTATGA 57.983 33.333 0.00 0.00 0.00 2.15
52 53 7.787935 GCGATCAATAAAGTGTTTACGAGTATG 59.212 37.037 0.00 0.00 0.00 2.39
53 54 7.042925 GGCGATCAATAAAGTGTTTACGAGTAT 60.043 37.037 0.00 0.00 0.00 2.12
54 55 6.254157 GGCGATCAATAAAGTGTTTACGAGTA 59.746 38.462 0.00 0.00 0.00 2.59
55 56 5.063060 GGCGATCAATAAAGTGTTTACGAGT 59.937 40.000 0.00 0.00 0.00 4.18
56 57 5.291128 AGGCGATCAATAAAGTGTTTACGAG 59.709 40.000 0.00 0.00 0.00 4.18
57 58 5.062934 CAGGCGATCAATAAAGTGTTTACGA 59.937 40.000 0.00 0.00 0.00 3.43
58 59 5.255596 CAGGCGATCAATAAAGTGTTTACG 58.744 41.667 0.00 0.00 0.00 3.18
59 60 5.028375 GCAGGCGATCAATAAAGTGTTTAC 58.972 41.667 0.00 0.00 0.00 2.01
60 61 4.697828 TGCAGGCGATCAATAAAGTGTTTA 59.302 37.500 0.00 0.00 0.00 2.01
61 62 3.505680 TGCAGGCGATCAATAAAGTGTTT 59.494 39.130 0.00 0.00 0.00 2.83
62 63 3.081061 TGCAGGCGATCAATAAAGTGTT 58.919 40.909 0.00 0.00 0.00 3.32
63 64 2.679837 CTGCAGGCGATCAATAAAGTGT 59.320 45.455 5.57 0.00 0.00 3.55
64 65 2.032550 CCTGCAGGCGATCAATAAAGTG 59.967 50.000 22.33 0.00 0.00 3.16
65 66 2.292267 CCTGCAGGCGATCAATAAAGT 58.708 47.619 22.33 0.00 0.00 2.66
78 79 1.153086 GACATGTAGGGCCTGCAGG 60.153 63.158 30.37 30.37 34.37 4.85
79 80 0.745845 GTGACATGTAGGGCCTGCAG 60.746 60.000 28.09 21.08 28.38 4.41
80 81 1.299648 GTGACATGTAGGGCCTGCA 59.700 57.895 26.78 26.78 0.00 4.41
81 82 1.452108 GGTGACATGTAGGGCCTGC 60.452 63.158 18.53 16.90 0.00 4.85
82 83 0.392998 GTGGTGACATGTAGGGCCTG 60.393 60.000 18.53 1.87 46.14 4.85
83 84 1.899437 CGTGGTGACATGTAGGGCCT 61.899 60.000 12.58 12.58 46.14 5.19
84 85 1.449601 CGTGGTGACATGTAGGGCC 60.450 63.158 0.00 0.00 46.14 5.80
85 86 1.449601 CCGTGGTGACATGTAGGGC 60.450 63.158 0.00 0.00 46.26 5.19
86 87 1.449601 GCCGTGGTGACATGTAGGG 60.450 63.158 0.00 0.00 46.26 3.53
87 88 0.740868 CTGCCGTGGTGACATGTAGG 60.741 60.000 0.00 0.00 46.26 3.18
88 89 0.246360 TCTGCCGTGGTGACATGTAG 59.754 55.000 0.00 0.00 46.26 2.74
89 90 0.682292 TTCTGCCGTGGTGACATGTA 59.318 50.000 0.00 0.00 46.26 2.29
157 158 4.000988 GGTGGAAGTAGAATTCTTTCGCA 58.999 43.478 14.36 9.45 36.93 5.10
164 167 5.705609 TTGCAAAGGTGGAAGTAGAATTC 57.294 39.130 0.00 0.00 30.64 2.17
166 169 5.574188 AGATTGCAAAGGTGGAAGTAGAAT 58.426 37.500 1.71 0.00 38.60 2.40
198 204 2.859165 AAAGATCGAACCTCCTGCAA 57.141 45.000 0.00 0.00 0.00 4.08
248 259 2.946990 GAGGTTTTTGTTTCCGACTGGA 59.053 45.455 0.00 0.00 44.61 3.86
252 263 1.002142 CCCGAGGTTTTTGTTTCCGAC 60.002 52.381 0.00 0.00 0.00 4.79
256 267 2.403259 CATGCCCGAGGTTTTTGTTTC 58.597 47.619 0.00 0.00 0.00 2.78
269 287 1.135315 CACGAGAAAAGCATGCCCG 59.865 57.895 15.66 10.89 0.00 6.13
298 316 0.179129 CGCAAGGAATGGCATGTTCC 60.179 55.000 11.18 11.18 44.39 3.62
338 359 8.999431 GGTATTGACTTGTAAGTTGAATCAAGA 58.001 33.333 10.09 0.00 39.88 3.02
339 360 8.783093 TGGTATTGACTTGTAAGTTGAATCAAG 58.217 33.333 0.00 0.00 39.88 3.02
340 361 8.684386 TGGTATTGACTTGTAAGTTGAATCAA 57.316 30.769 0.00 0.00 39.88 2.57
341 362 8.564574 GTTGGTATTGACTTGTAAGTTGAATCA 58.435 33.333 0.00 0.00 39.88 2.57
342 363 8.784043 AGTTGGTATTGACTTGTAAGTTGAATC 58.216 33.333 0.00 0.00 39.88 2.52
343 364 8.691661 AGTTGGTATTGACTTGTAAGTTGAAT 57.308 30.769 0.00 4.08 39.88 2.57
394 415 6.393990 TGCTTGCTTTTCTTCTGTGTAAAAA 58.606 32.000 0.00 0.00 0.00 1.94
399 420 5.391310 CGATATGCTTGCTTTTCTTCTGTGT 60.391 40.000 0.00 0.00 0.00 3.72
400 421 5.026462 CGATATGCTTGCTTTTCTTCTGTG 58.974 41.667 0.00 0.00 0.00 3.66
401 422 4.095483 CCGATATGCTTGCTTTTCTTCTGT 59.905 41.667 0.00 0.00 0.00 3.41
402 423 4.333649 TCCGATATGCTTGCTTTTCTTCTG 59.666 41.667 0.00 0.00 0.00 3.02
403 424 4.333926 GTCCGATATGCTTGCTTTTCTTCT 59.666 41.667 0.00 0.00 0.00 2.85
404 425 4.094887 TGTCCGATATGCTTGCTTTTCTTC 59.905 41.667 0.00 0.00 0.00 2.87
405 426 4.009675 TGTCCGATATGCTTGCTTTTCTT 58.990 39.130 0.00 0.00 0.00 2.52
432 709 2.800544 ACACGTTATCTGACACTGTTGC 59.199 45.455 0.00 0.00 0.00 4.17
433 710 5.403897 AAACACGTTATCTGACACTGTTG 57.596 39.130 0.00 0.00 0.00 3.33
463 740 1.984026 GGCTGATTGGGTGGGTTGG 60.984 63.158 0.00 0.00 0.00 3.77
464 741 2.342650 CGGCTGATTGGGTGGGTTG 61.343 63.158 0.00 0.00 0.00 3.77
465 742 2.035626 CGGCTGATTGGGTGGGTT 59.964 61.111 0.00 0.00 0.00 4.11
469 759 2.270205 AGCTCGGCTGATTGGGTG 59.730 61.111 0.00 0.00 37.57 4.61
536 836 2.034687 GGCGGATGGGATGGGATG 59.965 66.667 0.00 0.00 0.00 3.51
537 837 1.363530 AAAGGCGGATGGGATGGGAT 61.364 55.000 0.00 0.00 0.00 3.85
538 838 0.696143 TAAAGGCGGATGGGATGGGA 60.696 55.000 0.00 0.00 0.00 4.37
539 839 0.405585 ATAAAGGCGGATGGGATGGG 59.594 55.000 0.00 0.00 0.00 4.00
540 840 2.292828 AATAAAGGCGGATGGGATGG 57.707 50.000 0.00 0.00 0.00 3.51
541 841 5.982890 ATTAAATAAAGGCGGATGGGATG 57.017 39.130 0.00 0.00 0.00 3.51
662 971 4.200283 GACGGCAGGAGCGAGAGG 62.200 72.222 0.00 0.00 43.41 3.69
737 1054 3.403558 GGGAGGGAAGGAAGCGCT 61.404 66.667 2.64 2.64 0.00 5.92
969 1299 1.155155 CCTAGCCTCCCTCCTCCTC 59.845 68.421 0.00 0.00 0.00 3.71
973 1303 3.368501 TGCCCTAGCCTCCCTCCT 61.369 66.667 0.00 0.00 38.69 3.69
1082 1428 1.448013 CGAAGAGGAAACCGGAGCC 60.448 63.158 9.46 6.12 0.00 4.70
1083 1429 2.101233 GCGAAGAGGAAACCGGAGC 61.101 63.158 9.46 0.00 0.00 4.70
1113 1465 9.868277 CTCGGATTCAGCTAGAGAATAAATTAT 57.132 33.333 9.89 0.00 35.93 1.28
1116 1468 6.162777 GCTCGGATTCAGCTAGAGAATAAAT 58.837 40.000 9.89 0.00 35.93 1.40
1174 1533 3.966218 CGCACAACCTAAAGACTTTTTCG 59.034 43.478 5.61 0.00 0.00 3.46
1180 1539 2.631545 AGTACCGCACAACCTAAAGACT 59.368 45.455 0.00 0.00 0.00 3.24
1223 1587 1.999071 AAAACTGCAACGGCGAGCAA 61.999 50.000 25.58 13.86 45.35 3.91
1228 1592 2.928694 AGAAATAAAACTGCAACGGCG 58.071 42.857 4.80 4.80 45.35 6.46
1389 1753 2.743664 TGCATTCCAGTTCAGTCGATTG 59.256 45.455 0.68 0.68 0.00 2.67
1394 1758 4.154918 CCTAGTTTGCATTCCAGTTCAGTC 59.845 45.833 0.00 0.00 0.00 3.51
1404 1771 9.691362 TGTTAAGAAATTTCCTAGTTTGCATTC 57.309 29.630 14.61 0.00 0.00 2.67
1446 1813 3.213249 AGTTGTAGTTGACGACCGATC 57.787 47.619 0.00 0.00 42.81 3.69
1447 1814 3.755378 ACTAGTTGTAGTTGACGACCGAT 59.245 43.478 0.00 0.00 42.81 4.18
1449 1816 3.058708 TGACTAGTTGTAGTTGACGACCG 60.059 47.826 0.00 0.00 42.81 4.79
1458 1825 7.551262 TCACACACAAATTTGACTAGTTGTAGT 59.449 33.333 24.64 13.34 42.59 2.73
1465 1832 9.546909 GATGTAATCACACACAAATTTGACTAG 57.453 33.333 24.64 12.78 44.70 2.57
1565 1934 3.375299 CCCTGTTAGTAGCACAATCTTGC 59.625 47.826 0.00 0.00 43.34 4.01
1568 1937 4.532521 AGAACCCTGTTAGTAGCACAATCT 59.467 41.667 0.00 0.00 0.00 2.40
1737 2108 2.415512 GCAGTAACTAAAGAGCCAACCG 59.584 50.000 0.00 0.00 0.00 4.44
1751 2122 3.250040 ACGTCTGTGAAAATGGCAGTAAC 59.750 43.478 0.00 0.00 0.00 2.50
1772 2143 8.754080 AGGAGATACATAACAAGGCAGATATAC 58.246 37.037 0.00 0.00 0.00 1.47
1792 2366 4.865905 ACAGACTCAGACACATAGGAGAT 58.134 43.478 0.00 0.00 0.00 2.75
1915 2489 6.346838 GCATGCACAAAACTAACAAAGAATCC 60.347 38.462 14.21 0.00 0.00 3.01
1927 2505 5.410355 AGGAAATATGCATGCACAAAACT 57.590 34.783 25.37 14.18 0.00 2.66
1928 2506 5.638657 TCAAGGAAATATGCATGCACAAAAC 59.361 36.000 25.37 14.31 0.00 2.43
2212 2797 7.068103 CCATGTATGCTATGTAAAAAGTTGGGA 59.932 37.037 0.00 0.00 0.00 4.37
2415 3013 5.737922 GCAAAGATCATGAAGGCATTGCATA 60.738 40.000 21.26 0.00 33.27 3.14
2463 3061 5.756950 CACATTTTGCTCAAGTTGCTATG 57.243 39.130 0.00 0.00 0.00 2.23
2603 3288 2.778299 AGGCTGTTTAGATTCAACGCA 58.222 42.857 0.00 0.00 0.00 5.24
2907 3628 6.675026 CATCAACCTCACATAATATGCCTTG 58.325 40.000 0.00 0.00 0.00 3.61
3030 3759 1.339610 CTCGAGTCAGAGCCATTAGGG 59.660 57.143 3.62 0.00 40.85 3.53
3634 4648 2.926838 CGAAAAGCTAGACTCTGCCTTC 59.073 50.000 0.00 1.59 0.00 3.46
3682 4696 4.048970 AGGCTCTAGGTAAGTGTTCTCA 57.951 45.455 0.00 0.00 0.00 3.27
3967 4982 3.885297 TCTGCAGAGAACCCAAAGAAAAG 59.115 43.478 13.74 0.00 0.00 2.27
4068 5083 4.010349 GGAAGGAGGATGTTTAACCTGTG 58.990 47.826 0.00 0.00 36.57 3.66
4397 5528 0.321653 AATCCACACGAAGACCAGGC 60.322 55.000 0.00 0.00 0.00 4.85
4457 5596 4.082733 GCTTAGACATGGAAAACAAGGTCC 60.083 45.833 0.00 0.00 37.87 4.46
4468 5607 5.426689 ACAGATTTCAGCTTAGACATGGA 57.573 39.130 0.00 0.00 0.00 3.41
4506 5645 4.993705 AACTTCAACCCAGAAGATACCA 57.006 40.909 10.37 0.00 46.18 3.25
4508 5647 6.183360 GGCAATAACTTCAACCCAGAAGATAC 60.183 42.308 10.37 0.00 46.18 2.24
4516 5655 5.575157 TCTAATGGCAATAACTTCAACCCA 58.425 37.500 0.00 0.00 0.00 4.51
4579 5930 5.641209 GTGAACTCACATTCAGCTACAATCT 59.359 40.000 4.96 0.00 45.75 2.40
4708 6456 8.790718 AGCATGCCATTTACTCTTGATATAAAG 58.209 33.333 15.66 0.00 0.00 1.85
4709 6457 8.696043 AGCATGCCATTTACTCTTGATATAAA 57.304 30.769 15.66 0.00 0.00 1.40
4710 6458 8.159447 AGAGCATGCCATTTACTCTTGATATAA 58.841 33.333 15.66 0.00 34.06 0.98
4711 6459 7.683578 AGAGCATGCCATTTACTCTTGATATA 58.316 34.615 15.66 0.00 34.06 0.86
4712 6460 6.540995 AGAGCATGCCATTTACTCTTGATAT 58.459 36.000 15.66 0.00 34.06 1.63
4796 6544 3.576078 TGATATCCATGTGTCCCCAAC 57.424 47.619 0.00 0.00 0.00 3.77
5023 6771 0.248661 CGACTCTGTACAGATGGCGG 60.249 60.000 28.44 19.47 36.76 6.13
5113 6861 2.954753 GCACAGAACCGCAAGTCCG 61.955 63.158 0.00 0.00 0.00 4.79
5219 6967 5.826643 TCCAACCAAACCTAATGCTATCTT 58.173 37.500 0.00 0.00 0.00 2.40
5248 6996 3.118555 TGATAACTCAACCACCATACGGG 60.119 47.826 0.00 0.00 44.81 5.28
5319 7067 4.142902 GGAACATGACATTGGACAAGTACG 60.143 45.833 0.00 0.00 0.00 3.67
5423 7175 3.557185 TCGCAATCATCATAACAGCAGTC 59.443 43.478 0.00 0.00 0.00 3.51
5424 7176 3.534554 TCGCAATCATCATAACAGCAGT 58.465 40.909 0.00 0.00 0.00 4.40
5438 7190 8.774586 ACCAGTAATGTAATCTTAATCGCAATC 58.225 33.333 0.00 0.00 0.00 2.67
5531 7283 6.264292 TCTGGACTCAGAACTAGCAGATTATC 59.736 42.308 0.00 0.00 46.08 1.75
5558 7313 4.597507 TCTCAACCACTTATTCTTCACCCT 59.402 41.667 0.00 0.00 0.00 4.34
5575 7330 6.713792 AGCTCTTTTTAAGATCGTCTCAAC 57.286 37.500 0.00 0.00 36.82 3.18
5611 7366 7.037438 CCTTCACGTGTAGCTTAATAGGTTTA 58.963 38.462 16.51 0.00 33.36 2.01
5612 7367 5.873164 CCTTCACGTGTAGCTTAATAGGTTT 59.127 40.000 16.51 0.00 33.36 3.27
5613 7368 5.186409 TCCTTCACGTGTAGCTTAATAGGTT 59.814 40.000 16.51 0.00 33.36 3.50
5614 7369 4.708421 TCCTTCACGTGTAGCTTAATAGGT 59.292 41.667 16.51 0.00 35.90 3.08
5615 7370 5.041940 GTCCTTCACGTGTAGCTTAATAGG 58.958 45.833 16.51 9.15 0.00 2.57
5616 7371 4.733887 CGTCCTTCACGTGTAGCTTAATAG 59.266 45.833 16.51 0.88 44.07 1.73
5617 7372 4.665212 CGTCCTTCACGTGTAGCTTAATA 58.335 43.478 16.51 0.00 44.07 0.98
5618 7373 3.508762 CGTCCTTCACGTGTAGCTTAAT 58.491 45.455 16.51 0.00 44.07 1.40
5619 7374 2.937591 CGTCCTTCACGTGTAGCTTAA 58.062 47.619 16.51 0.00 44.07 1.85
5620 7375 2.624316 CGTCCTTCACGTGTAGCTTA 57.376 50.000 16.51 0.90 44.07 3.09
5621 7376 3.491581 CGTCCTTCACGTGTAGCTT 57.508 52.632 16.51 0.00 44.07 3.74
5630 7385 1.966451 CTGGTTGGCCGTCCTTCAC 60.966 63.158 15.48 0.00 37.67 3.18
5631 7386 2.429930 CTGGTTGGCCGTCCTTCA 59.570 61.111 15.48 0.23 37.67 3.02
5632 7387 2.180159 TAGCTGGTTGGCCGTCCTTC 62.180 60.000 15.48 8.23 37.67 3.46
5633 7388 1.562672 ATAGCTGGTTGGCCGTCCTT 61.563 55.000 15.48 5.80 37.67 3.36
5634 7389 1.995626 ATAGCTGGTTGGCCGTCCT 60.996 57.895 15.48 1.32 37.67 3.85
5635 7390 1.819632 CATAGCTGGTTGGCCGTCC 60.820 63.158 8.83 8.83 37.67 4.79
5636 7391 2.472909 GCATAGCTGGTTGGCCGTC 61.473 63.158 0.00 0.00 37.67 4.79
5637 7392 2.438434 GCATAGCTGGTTGGCCGT 60.438 61.111 0.00 0.00 37.67 5.68
5638 7393 3.211963 GGCATAGCTGGTTGGCCG 61.212 66.667 0.00 0.00 37.67 6.13
5639 7394 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
5640 7395 2.764314 CGTGGCATAGCTGGTTGGC 61.764 63.158 0.00 4.54 38.77 4.52
5641 7396 1.377202 ACGTGGCATAGCTGGTTGG 60.377 57.895 0.00 0.00 0.00 3.77
5642 7397 1.647545 CCACGTGGCATAGCTGGTTG 61.648 60.000 24.02 0.00 0.00 3.77
5643 7398 1.377202 CCACGTGGCATAGCTGGTT 60.377 57.895 24.02 0.00 0.00 3.67
5644 7399 2.268920 CCACGTGGCATAGCTGGT 59.731 61.111 24.02 0.00 0.00 4.00
5654 7409 4.688419 CAAGCTTGCGCCACGTGG 62.688 66.667 30.66 30.66 36.60 4.94
5655 7410 3.468266 AACAAGCTTGCGCCACGTG 62.468 57.895 26.27 9.08 36.60 4.49
5656 7411 3.209097 AACAAGCTTGCGCCACGT 61.209 55.556 26.27 1.65 36.60 4.49
5657 7412 2.726912 CAACAAGCTTGCGCCACG 60.727 61.111 26.27 0.85 36.60 4.94
5658 7413 2.355009 CCAACAAGCTTGCGCCAC 60.355 61.111 26.27 0.00 36.60 5.01
5659 7414 2.832661 ACCAACAAGCTTGCGCCA 60.833 55.556 26.27 0.00 36.60 5.69
5660 7415 2.050077 GACCAACAAGCTTGCGCC 60.050 61.111 26.27 7.66 36.60 6.53
5661 7416 2.427410 CGACCAACAAGCTTGCGC 60.427 61.111 26.27 0.00 0.00 6.09
5662 7417 1.369209 CACGACCAACAAGCTTGCG 60.369 57.895 26.27 21.57 0.00 4.85
5663 7418 0.100503 AACACGACCAACAAGCTTGC 59.899 50.000 26.27 8.60 0.00 4.01
5664 7419 1.400142 TCAACACGACCAACAAGCTTG 59.600 47.619 24.84 24.84 0.00 4.01
5665 7420 1.745232 TCAACACGACCAACAAGCTT 58.255 45.000 0.00 0.00 0.00 3.74
5666 7421 1.745232 TTCAACACGACCAACAAGCT 58.255 45.000 0.00 0.00 0.00 3.74
5667 7422 2.553079 TTTCAACACGACCAACAAGC 57.447 45.000 0.00 0.00 0.00 4.01
5668 7423 3.303229 GCTTTTTCAACACGACCAACAAG 59.697 43.478 0.00 0.00 0.00 3.16
5669 7424 3.057174 AGCTTTTTCAACACGACCAACAA 60.057 39.130 0.00 0.00 0.00 2.83
5670 7425 2.490115 AGCTTTTTCAACACGACCAACA 59.510 40.909 0.00 0.00 0.00 3.33
5671 7426 3.145212 AGCTTTTTCAACACGACCAAC 57.855 42.857 0.00 0.00 0.00 3.77
5672 7427 3.859411 AAGCTTTTTCAACACGACCAA 57.141 38.095 0.00 0.00 0.00 3.67
5673 7428 3.859411 AAAGCTTTTTCAACACGACCA 57.141 38.095 5.69 0.00 0.00 4.02
5674 7429 4.170256 TCAAAAGCTTTTTCAACACGACC 58.830 39.130 21.70 0.00 0.00 4.79
5675 7430 5.755330 TTCAAAAGCTTTTTCAACACGAC 57.245 34.783 21.70 0.00 0.00 4.34
5676 7431 8.641499 AATATTCAAAAGCTTTTTCAACACGA 57.359 26.923 21.70 11.20 0.00 4.35
5730 7485 8.912988 TCAACACCTTCATCTAAAAGACATTTT 58.087 29.630 0.00 0.00 41.48 1.82
5731 7486 8.352942 GTCAACACCTTCATCTAAAAGACATTT 58.647 33.333 0.00 0.00 34.92 2.32
5732 7487 7.040409 GGTCAACACCTTCATCTAAAAGACATT 60.040 37.037 0.00 0.00 40.00 2.71
5733 7488 6.431234 GGTCAACACCTTCATCTAAAAGACAT 59.569 38.462 0.00 0.00 40.00 3.06
5734 7489 5.763204 GGTCAACACCTTCATCTAAAAGACA 59.237 40.000 0.00 0.00 40.00 3.41
5735 7490 6.242508 GGTCAACACCTTCATCTAAAAGAC 57.757 41.667 0.00 0.00 40.00 3.01
5787 7542 2.253452 CAGCACTCGCCACTTTGC 59.747 61.111 0.00 0.00 39.83 3.68
5788 7543 0.602638 TACCAGCACTCGCCACTTTG 60.603 55.000 0.00 0.00 39.83 2.77
5789 7544 0.320771 CTACCAGCACTCGCCACTTT 60.321 55.000 0.00 0.00 39.83 2.66
5790 7545 1.293498 CTACCAGCACTCGCCACTT 59.707 57.895 0.00 0.00 39.83 3.16
5791 7546 2.650116 CCTACCAGCACTCGCCACT 61.650 63.158 0.00 0.00 39.83 4.00
5792 7547 2.125512 CCTACCAGCACTCGCCAC 60.126 66.667 0.00 0.00 39.83 5.01
5793 7548 4.082523 GCCTACCAGCACTCGCCA 62.083 66.667 0.00 0.00 39.83 5.69
5794 7549 4.840005 GGCCTACCAGCACTCGCC 62.840 72.222 0.00 0.00 39.83 5.54
5796 7551 3.760035 ACGGCCTACCAGCACTCG 61.760 66.667 0.00 0.00 34.57 4.18
5797 7552 2.125512 CACGGCCTACCAGCACTC 60.126 66.667 0.00 0.00 34.57 3.51
5798 7553 2.516888 AACACGGCCTACCAGCACT 61.517 57.895 0.00 0.00 34.57 4.40
5799 7554 2.032071 AACACGGCCTACCAGCAC 59.968 61.111 0.00 0.00 34.57 4.40
5800 7555 2.031919 CAACACGGCCTACCAGCA 59.968 61.111 0.00 0.00 34.57 4.41
5801 7556 2.746277 CCAACACGGCCTACCAGC 60.746 66.667 0.00 0.00 34.57 4.85
5802 7557 1.671054 CACCAACACGGCCTACCAG 60.671 63.158 0.00 0.00 39.03 4.00
5803 7558 1.485294 ATCACCAACACGGCCTACCA 61.485 55.000 0.00 0.00 39.03 3.25
5804 7559 0.743345 GATCACCAACACGGCCTACC 60.743 60.000 0.00 0.00 39.03 3.18
5805 7560 0.249398 AGATCACCAACACGGCCTAC 59.751 55.000 0.00 0.00 39.03 3.18
5806 7561 0.981183 AAGATCACCAACACGGCCTA 59.019 50.000 0.00 0.00 39.03 3.93
5807 7562 0.110486 AAAGATCACCAACACGGCCT 59.890 50.000 0.00 0.00 39.03 5.19
5808 7563 0.958822 AAAAGATCACCAACACGGCC 59.041 50.000 0.00 0.00 39.03 6.13
5809 7564 1.880027 AGAAAAGATCACCAACACGGC 59.120 47.619 0.00 0.00 39.03 5.68
5810 7565 4.568152 AAAGAAAAGATCACCAACACGG 57.432 40.909 0.00 0.00 42.50 4.94
5811 7566 5.821204 AGAAAAGAAAAGATCACCAACACG 58.179 37.500 0.00 0.00 0.00 4.49
5812 7567 8.479313 AAAAGAAAAGAAAAGATCACCAACAC 57.521 30.769 0.00 0.00 0.00 3.32
5837 7592 9.284968 CACCTCCATCTAGAAAAAGAAGTAAAA 57.715 33.333 0.00 0.00 0.00 1.52
5839 7594 8.202461 TCACCTCCATCTAGAAAAAGAAGTAA 57.798 34.615 0.00 0.00 0.00 2.24
5840 7595 7.792364 TCACCTCCATCTAGAAAAAGAAGTA 57.208 36.000 0.00 0.00 0.00 2.24
5845 7600 7.693969 AAACATCACCTCCATCTAGAAAAAG 57.306 36.000 0.00 0.00 0.00 2.27
5847 7602 9.581289 TTTTAAACATCACCTCCATCTAGAAAA 57.419 29.630 0.00 0.00 0.00 2.29
5848 7603 9.581289 TTTTTAAACATCACCTCCATCTAGAAA 57.419 29.630 0.00 0.00 0.00 2.52
5874 7629 9.413734 CCTCACCTTCATCTAGGAAAATATTTT 57.586 33.333 13.24 13.24 38.73 1.82
5875 7630 8.781951 TCCTCACCTTCATCTAGGAAAATATTT 58.218 33.333 0.00 0.00 38.73 1.40
5877 7632 7.570607 AGTCCTCACCTTCATCTAGGAAAATAT 59.429 37.037 0.00 0.00 38.06 1.28
5878 7633 6.903534 AGTCCTCACCTTCATCTAGGAAAATA 59.096 38.462 0.00 0.00 38.06 1.40
5881 7636 4.689062 AGTCCTCACCTTCATCTAGGAAA 58.311 43.478 0.00 0.00 38.06 3.13
5882 7637 4.338795 AGTCCTCACCTTCATCTAGGAA 57.661 45.455 0.00 0.00 38.06 3.36
5884 7639 4.537751 TGTAGTCCTCACCTTCATCTAGG 58.462 47.826 0.00 0.00 41.31 3.02
5885 7640 5.596361 ACATGTAGTCCTCACCTTCATCTAG 59.404 44.000 0.00 0.00 0.00 2.43
5886 7641 5.519808 ACATGTAGTCCTCACCTTCATCTA 58.480 41.667 0.00 0.00 0.00 1.98
5888 7643 4.744795 ACATGTAGTCCTCACCTTCATC 57.255 45.455 0.00 0.00 0.00 2.92
5889 7644 5.273208 AGTACATGTAGTCCTCACCTTCAT 58.727 41.667 5.62 0.00 0.00 2.57
5891 7646 5.662674 AAGTACATGTAGTCCTCACCTTC 57.337 43.478 13.58 0.00 0.00 3.46
5893 7648 6.435292 AAAAAGTACATGTAGTCCTCACCT 57.565 37.500 13.58 0.00 0.00 4.00
5913 7668 4.855388 TGTGCGCACGTTTTTACTTAAAAA 59.145 33.333 33.22 8.97 41.36 1.94
5914 7669 4.409570 TGTGCGCACGTTTTTACTTAAAA 58.590 34.783 33.22 9.66 33.41 1.52
5915 7670 4.012319 TGTGCGCACGTTTTTACTTAAA 57.988 36.364 33.22 10.12 0.00 1.52
5917 7672 3.670311 TTGTGCGCACGTTTTTACTTA 57.330 38.095 33.22 10.88 0.00 2.24
5918 7673 2.546195 TTGTGCGCACGTTTTTACTT 57.454 40.000 33.22 0.00 0.00 2.24
5919 7674 2.766970 ATTGTGCGCACGTTTTTACT 57.233 40.000 33.22 8.15 0.00 2.24
5920 7675 3.827281 AAATTGTGCGCACGTTTTTAC 57.173 38.095 33.22 9.77 0.00 2.01
5923 7678 2.533942 GAGAAAATTGTGCGCACGTTTT 59.466 40.909 35.85 35.85 35.73 2.43
5925 7680 1.333619 AGAGAAAATTGTGCGCACGTT 59.666 42.857 33.22 26.61 0.00 3.99
5926 7681 0.944386 AGAGAAAATTGTGCGCACGT 59.056 45.000 33.22 22.59 0.00 4.49
5927 7682 1.069973 TGAGAGAAAATTGTGCGCACG 60.070 47.619 33.22 0.00 0.00 5.34
5928 7683 2.686558 TGAGAGAAAATTGTGCGCAC 57.313 45.000 33.11 33.11 0.00 5.34
5929 7684 2.605338 GCTTGAGAGAAAATTGTGCGCA 60.605 45.455 5.66 5.66 0.00 6.09
5930 7685 1.981533 GCTTGAGAGAAAATTGTGCGC 59.018 47.619 0.00 0.00 0.00 6.09
5931 7686 2.236690 CGCTTGAGAGAAAATTGTGCG 58.763 47.619 0.00 0.00 35.22 5.34
5932 7687 2.589014 CCGCTTGAGAGAAAATTGTGC 58.411 47.619 0.00 0.00 0.00 4.57
5933 7688 2.589014 GCCGCTTGAGAGAAAATTGTG 58.411 47.619 0.00 0.00 0.00 3.33
5935 7690 1.887320 CGCCGCTTGAGAGAAAATTG 58.113 50.000 0.00 0.00 0.00 2.32
5937 7692 1.648467 GGCGCCGCTTGAGAGAAAAT 61.648 55.000 12.58 0.00 0.00 1.82
5939 7694 2.742372 GGCGCCGCTTGAGAGAAA 60.742 61.111 12.58 0.00 0.00 2.52
5940 7695 4.002506 TGGCGCCGCTTGAGAGAA 62.003 61.111 23.90 0.00 0.00 2.87
5941 7696 4.742201 GTGGCGCCGCTTGAGAGA 62.742 66.667 32.27 2.34 0.00 3.10
5963 7718 4.028490 CTAGTGGTTGGGGCGCCA 62.028 66.667 30.85 20.22 0.00 5.69
5964 7719 4.029809 ACTAGTGGTTGGGGCGCC 62.030 66.667 21.18 21.18 0.00 6.53
5966 7721 0.744414 CATCACTAGTGGTTGGGGCG 60.744 60.000 22.48 0.00 0.00 6.13
5974 7729 3.866651 CTCTTTGGACCATCACTAGTGG 58.133 50.000 22.48 9.62 42.55 4.00
5975 7730 3.265791 GCTCTTTGGACCATCACTAGTG 58.734 50.000 17.17 17.17 0.00 2.74
5977 7732 2.093973 ACGCTCTTTGGACCATCACTAG 60.094 50.000 0.00 0.00 0.00 2.57
5978 7733 1.899814 ACGCTCTTTGGACCATCACTA 59.100 47.619 0.00 0.00 0.00 2.74
5979 7734 0.687354 ACGCTCTTTGGACCATCACT 59.313 50.000 0.00 0.00 0.00 3.41
5980 7735 2.380084 TACGCTCTTTGGACCATCAC 57.620 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.