Multiple sequence alignment - TraesCS6D01G093000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G093000 chr6D 100.000 3221 0 0 1 3221 58062240 58059020 0.000000e+00 5949.0
1 TraesCS6D01G093000 chr6D 86.186 333 32 9 11 336 15742791 15743116 6.610000e-92 348.0
2 TraesCS6D01G093000 chr6A 91.268 1901 94 27 495 2349 73385844 73383970 0.000000e+00 2525.0
3 TraesCS6D01G093000 chr6A 84.416 154 18 5 436 585 596578711 596578560 2.590000e-31 147.0
4 TraesCS6D01G093000 chr6B 93.369 1674 64 22 688 2347 130318470 130316830 0.000000e+00 2433.0
5 TraesCS6D01G093000 chr6B 84.967 153 19 4 431 581 66750610 66750760 5.570000e-33 152.0
6 TraesCS6D01G093000 chr4D 98.852 871 9 1 2352 3221 105236436 105235566 0.000000e+00 1552.0
7 TraesCS6D01G093000 chr7D 98.411 881 11 3 2341 3221 116814075 116814952 0.000000e+00 1546.0
8 TraesCS6D01G093000 chr7D 82.609 322 40 11 27 335 276929954 276929636 1.470000e-68 270.0
9 TraesCS6D01G093000 chr3D 98.624 872 9 1 2350 3221 91311515 91310647 0.000000e+00 1541.0
10 TraesCS6D01G093000 chr3D 87.538 329 31 7 9 335 380960804 380961124 3.920000e-99 372.0
11 TraesCS6D01G093000 chr7A 97.365 873 22 1 2350 3221 652017098 652017970 0.000000e+00 1483.0
12 TraesCS6D01G093000 chr1D 97.362 872 21 2 2352 3221 394550081 394549210 0.000000e+00 1482.0
13 TraesCS6D01G093000 chr1D 94.857 875 38 5 2350 3221 46921117 46921987 0.000000e+00 1360.0
14 TraesCS6D01G093000 chr1D 84.314 153 21 3 431 581 268943779 268943628 2.590000e-31 147.0
15 TraesCS6D01G093000 chr1D 82.716 81 14 0 2127 2207 415435091 415435011 4.460000e-09 73.1
16 TraesCS6D01G093000 chr2A 96.263 883 30 2 2340 3221 125039593 125038713 0.000000e+00 1445.0
17 TraesCS6D01G093000 chr2A 96.659 868 28 1 2355 3221 22589584 22588717 0.000000e+00 1441.0
18 TraesCS6D01G093000 chr2A 77.761 652 132 12 1576 2222 465552651 465552008 3.900000e-104 388.0
19 TraesCS6D01G093000 chr5A 95.103 878 39 3 2347 3221 181950222 181949346 0.000000e+00 1380.0
20 TraesCS6D01G093000 chr1B 85.503 338 31 14 15 335 142831362 142831698 1.430000e-88 337.0
21 TraesCS6D01G093000 chr1B 83.951 81 13 0 2127 2207 561753080 561753000 9.580000e-11 78.7
22 TraesCS6D01G093000 chr1B 92.683 41 2 1 381 421 629704587 629704548 1.250000e-04 58.4
23 TraesCS6D01G093000 chr7B 85.196 331 31 15 16 336 733128619 733128941 1.110000e-84 324.0
24 TraesCS6D01G093000 chr7B 85.621 153 19 3 431 581 454795160 454795311 1.200000e-34 158.0
25 TraesCS6D01G093000 chr4A 84.570 337 39 11 13 341 443369589 443369258 4.010000e-84 322.0
26 TraesCS6D01G093000 chr5B 88.192 271 19 11 73 337 541310209 541310472 8.680000e-81 311.0
27 TraesCS6D01G093000 chr5B 85.621 153 15 4 431 581 100222272 100222419 1.550000e-33 154.0
28 TraesCS6D01G093000 chr2B 90.948 232 15 5 109 335 694885833 694885603 1.120000e-79 307.0
29 TraesCS6D01G093000 chr4B 90.789 228 19 2 109 335 671701589 671701815 1.450000e-78 303.0
30 TraesCS6D01G093000 chr4B 84.375 160 18 6 431 586 413013228 413013384 2.000000e-32 150.0
31 TraesCS6D01G093000 chr3A 86.452 155 19 2 431 583 717291428 717291274 5.530000e-38 169.0
32 TraesCS6D01G093000 chrUn 84.615 156 20 3 431 583 63609172 63609018 5.570000e-33 152.0
33 TraesCS6D01G093000 chr1A 85.185 81 12 0 2127 2207 513158536 513158456 2.060000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G093000 chr6D 58059020 58062240 3220 True 5949 5949 100.000 1 3221 1 chr6D.!!$R1 3220
1 TraesCS6D01G093000 chr6A 73383970 73385844 1874 True 2525 2525 91.268 495 2349 1 chr6A.!!$R1 1854
2 TraesCS6D01G093000 chr6B 130316830 130318470 1640 True 2433 2433 93.369 688 2347 1 chr6B.!!$R1 1659
3 TraesCS6D01G093000 chr4D 105235566 105236436 870 True 1552 1552 98.852 2352 3221 1 chr4D.!!$R1 869
4 TraesCS6D01G093000 chr7D 116814075 116814952 877 False 1546 1546 98.411 2341 3221 1 chr7D.!!$F1 880
5 TraesCS6D01G093000 chr3D 91310647 91311515 868 True 1541 1541 98.624 2350 3221 1 chr3D.!!$R1 871
6 TraesCS6D01G093000 chr7A 652017098 652017970 872 False 1483 1483 97.365 2350 3221 1 chr7A.!!$F1 871
7 TraesCS6D01G093000 chr1D 394549210 394550081 871 True 1482 1482 97.362 2352 3221 1 chr1D.!!$R2 869
8 TraesCS6D01G093000 chr1D 46921117 46921987 870 False 1360 1360 94.857 2350 3221 1 chr1D.!!$F1 871
9 TraesCS6D01G093000 chr2A 125038713 125039593 880 True 1445 1445 96.263 2340 3221 1 chr2A.!!$R2 881
10 TraesCS6D01G093000 chr2A 22588717 22589584 867 True 1441 1441 96.659 2355 3221 1 chr2A.!!$R1 866
11 TraesCS6D01G093000 chr2A 465552008 465552651 643 True 388 388 77.761 1576 2222 1 chr2A.!!$R3 646
12 TraesCS6D01G093000 chr5A 181949346 181950222 876 True 1380 1380 95.103 2347 3221 1 chr5A.!!$R1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.108804 CACTCGACGCAGGGTGTAAT 60.109 55.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2367 0.040246 GCGCTCCTATGACGTACTCC 60.04 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.564872 GAGGTTAGGGAAGTAGGGGT 57.435 55.000 0.00 0.00 0.00 4.95
20 21 2.117051 GAGGTTAGGGAAGTAGGGGTG 58.883 57.143 0.00 0.00 0.00 4.61
21 22 1.210538 GGTTAGGGAAGTAGGGGTGG 58.789 60.000 0.00 0.00 0.00 4.61
22 23 1.210538 GTTAGGGAAGTAGGGGTGGG 58.789 60.000 0.00 0.00 0.00 4.61
23 24 0.622446 TTAGGGAAGTAGGGGTGGGC 60.622 60.000 0.00 0.00 0.00 5.36
24 25 2.884179 TAGGGAAGTAGGGGTGGGCG 62.884 65.000 0.00 0.00 0.00 6.13
25 26 3.793888 GGAAGTAGGGGTGGGCGG 61.794 72.222 0.00 0.00 0.00 6.13
26 27 4.484872 GAAGTAGGGGTGGGCGGC 62.485 72.222 0.00 0.00 0.00 6.53
78 79 4.463879 CAGCGGCAGGAGGGACTG 62.464 72.222 1.45 0.00 41.55 3.51
80 81 4.767255 GCGGCAGGAGGGACTGTG 62.767 72.222 0.00 0.00 41.55 3.66
81 82 4.087892 CGGCAGGAGGGACTGTGG 62.088 72.222 0.00 0.00 41.55 4.17
82 83 4.416738 GGCAGGAGGGACTGTGGC 62.417 72.222 0.00 0.00 41.55 5.01
83 84 4.767255 GCAGGAGGGACTGTGGCG 62.767 72.222 0.00 0.00 41.55 5.69
84 85 4.087892 CAGGAGGGACTGTGGCGG 62.088 72.222 0.00 0.00 41.55 6.13
87 88 4.767255 GAGGGACTGTGGCGGCAG 62.767 72.222 13.91 3.83 41.55 4.85
106 107 4.012895 GGTGCGTGGCGACAACTG 62.013 66.667 0.00 0.00 46.06 3.16
107 108 4.012895 GTGCGTGGCGACAACTGG 62.013 66.667 0.00 0.00 46.06 4.00
140 141 2.649331 CGGAAGCGTTAGGAAAGAGA 57.351 50.000 0.00 0.00 0.00 3.10
141 142 3.166489 CGGAAGCGTTAGGAAAGAGAT 57.834 47.619 0.00 0.00 0.00 2.75
142 143 2.860735 CGGAAGCGTTAGGAAAGAGATG 59.139 50.000 0.00 0.00 0.00 2.90
143 144 2.609916 GGAAGCGTTAGGAAAGAGATGC 59.390 50.000 0.00 0.00 0.00 3.91
144 145 1.927895 AGCGTTAGGAAAGAGATGCG 58.072 50.000 0.00 0.00 0.00 4.73
145 146 0.931005 GCGTTAGGAAAGAGATGCGG 59.069 55.000 0.00 0.00 0.00 5.69
146 147 1.739371 GCGTTAGGAAAGAGATGCGGT 60.739 52.381 0.00 0.00 0.00 5.68
147 148 2.480759 GCGTTAGGAAAGAGATGCGGTA 60.481 50.000 0.00 0.00 0.00 4.02
148 149 3.799232 GCGTTAGGAAAGAGATGCGGTAT 60.799 47.826 0.00 0.00 0.00 2.73
149 150 3.982058 CGTTAGGAAAGAGATGCGGTATC 59.018 47.826 0.00 0.00 35.97 2.24
151 152 3.742433 AGGAAAGAGATGCGGTATCTG 57.258 47.619 13.49 0.00 46.12 2.90
152 153 3.300388 AGGAAAGAGATGCGGTATCTGA 58.700 45.455 13.49 0.00 46.12 3.27
153 154 3.900601 AGGAAAGAGATGCGGTATCTGAT 59.099 43.478 13.49 0.00 46.12 2.90
154 155 5.080337 AGGAAAGAGATGCGGTATCTGATA 58.920 41.667 13.49 0.00 46.12 2.15
155 156 5.047660 AGGAAAGAGATGCGGTATCTGATAC 60.048 44.000 17.52 17.52 46.12 2.24
156 157 4.792521 AAGAGATGCGGTATCTGATACC 57.207 45.455 29.07 29.07 46.12 2.73
169 170 4.058721 TCTGATACCATGTGGATTGTCG 57.941 45.455 5.96 0.00 38.94 4.35
170 171 3.704061 TCTGATACCATGTGGATTGTCGA 59.296 43.478 5.96 0.00 38.94 4.20
171 172 4.344968 TCTGATACCATGTGGATTGTCGAT 59.655 41.667 5.96 0.00 38.94 3.59
172 173 5.538433 TCTGATACCATGTGGATTGTCGATA 59.462 40.000 5.96 0.00 38.94 2.92
173 174 6.211384 TCTGATACCATGTGGATTGTCGATAT 59.789 38.462 5.96 0.00 38.94 1.63
174 175 6.165577 TGATACCATGTGGATTGTCGATATG 58.834 40.000 5.96 0.00 38.94 1.78
175 176 4.422073 ACCATGTGGATTGTCGATATGT 57.578 40.909 5.96 0.00 38.94 2.29
176 177 4.780815 ACCATGTGGATTGTCGATATGTT 58.219 39.130 5.96 0.00 38.94 2.71
177 178 4.816385 ACCATGTGGATTGTCGATATGTTC 59.184 41.667 5.96 0.00 38.94 3.18
178 179 4.815846 CCATGTGGATTGTCGATATGTTCA 59.184 41.667 0.00 0.00 37.39 3.18
179 180 5.471116 CCATGTGGATTGTCGATATGTTCAT 59.529 40.000 0.00 0.00 37.39 2.57
180 181 6.016860 CCATGTGGATTGTCGATATGTTCATT 60.017 38.462 0.00 0.00 37.39 2.57
181 182 6.362210 TGTGGATTGTCGATATGTTCATTG 57.638 37.500 0.00 0.00 0.00 2.82
182 183 6.112058 TGTGGATTGTCGATATGTTCATTGA 58.888 36.000 0.00 0.00 0.00 2.57
183 184 6.767423 TGTGGATTGTCGATATGTTCATTGAT 59.233 34.615 0.00 0.00 0.00 2.57
184 185 7.041848 TGTGGATTGTCGATATGTTCATTGATC 60.042 37.037 0.00 0.00 0.00 2.92
185 186 6.146021 TGGATTGTCGATATGTTCATTGATCG 59.854 38.462 10.05 10.05 41.93 3.69
186 187 6.146184 GGATTGTCGATATGTTCATTGATCGT 59.854 38.462 13.79 1.58 41.44 3.73
187 188 7.328493 GGATTGTCGATATGTTCATTGATCGTA 59.672 37.037 13.79 3.54 41.44 3.43
188 189 8.763049 ATTGTCGATATGTTCATTGATCGTAT 57.237 30.769 13.79 8.54 41.44 3.06
189 190 9.855021 ATTGTCGATATGTTCATTGATCGTATA 57.145 29.630 13.79 5.32 41.44 1.47
190 191 8.669394 TGTCGATATGTTCATTGATCGTATAC 57.331 34.615 13.79 0.00 41.44 1.47
191 192 8.512138 TGTCGATATGTTCATTGATCGTATACT 58.488 33.333 13.79 0.00 41.44 2.12
192 193 9.001049 GTCGATATGTTCATTGATCGTATACTC 57.999 37.037 13.79 0.00 41.44 2.59
193 194 7.903431 TCGATATGTTCATTGATCGTATACTCG 59.097 37.037 13.79 9.35 41.44 4.18
194 195 7.692705 CGATATGTTCATTGATCGTATACTCGT 59.307 37.037 8.70 0.00 37.11 4.18
195 196 9.983804 GATATGTTCATTGATCGTATACTCGTA 57.016 33.333 8.70 0.00 0.00 3.43
196 197 9.989869 ATATGTTCATTGATCGTATACTCGTAG 57.010 33.333 0.56 0.00 0.00 3.51
197 198 6.140786 TGTTCATTGATCGTATACTCGTAGC 58.859 40.000 0.56 0.00 0.00 3.58
198 199 5.934935 TCATTGATCGTATACTCGTAGCA 57.065 39.130 0.56 0.00 0.00 3.49
199 200 6.496338 TCATTGATCGTATACTCGTAGCAT 57.504 37.500 0.56 0.00 0.00 3.79
200 201 7.605410 TCATTGATCGTATACTCGTAGCATA 57.395 36.000 0.56 0.00 0.00 3.14
201 202 7.461918 TCATTGATCGTATACTCGTAGCATAC 58.538 38.462 0.56 0.00 38.50 2.39
202 203 6.790285 TTGATCGTATACTCGTAGCATACA 57.210 37.500 0.56 0.00 43.24 2.29
203 204 6.980051 TGATCGTATACTCGTAGCATACAT 57.020 37.500 0.56 0.00 43.24 2.29
204 205 8.483307 TTGATCGTATACTCGTAGCATACATA 57.517 34.615 0.56 0.00 43.24 2.29
205 206 8.128016 TGATCGTATACTCGTAGCATACATAG 57.872 38.462 0.56 0.00 43.24 2.23
206 207 7.977853 TGATCGTATACTCGTAGCATACATAGA 59.022 37.037 0.56 0.00 43.24 1.98
207 208 7.752557 TCGTATACTCGTAGCATACATAGAG 57.247 40.000 0.56 0.00 43.24 2.43
208 209 7.318893 TCGTATACTCGTAGCATACATAGAGT 58.681 38.462 0.56 1.55 43.24 3.24
209 210 7.275123 TCGTATACTCGTAGCATACATAGAGTG 59.725 40.741 0.56 0.00 43.24 3.51
210 211 4.491234 ACTCGTAGCATACATAGAGTGC 57.509 45.455 0.00 0.00 43.24 4.40
211 212 3.883489 ACTCGTAGCATACATAGAGTGCA 59.117 43.478 0.00 0.00 43.24 4.57
212 213 4.338400 ACTCGTAGCATACATAGAGTGCAA 59.662 41.667 0.00 0.00 43.24 4.08
213 214 4.860072 TCGTAGCATACATAGAGTGCAAG 58.140 43.478 0.00 0.00 43.24 4.01
214 215 3.983988 CGTAGCATACATAGAGTGCAAGG 59.016 47.826 0.00 0.00 43.24 3.61
215 216 3.482156 AGCATACATAGAGTGCAAGGG 57.518 47.619 0.00 0.00 41.19 3.95
216 217 1.876156 GCATACATAGAGTGCAAGGGC 59.124 52.381 0.00 0.00 38.68 5.19
217 218 7.702636 GTAGCATACATAGAGTGCAAGGGCA 62.703 48.000 0.00 0.00 44.80 5.36
230 231 4.298744 GCAAGGGCAAGAATATCTCAAC 57.701 45.455 0.00 0.00 40.72 3.18
231 232 3.067320 GCAAGGGCAAGAATATCTCAACC 59.933 47.826 0.00 0.00 40.72 3.77
232 233 3.199880 AGGGCAAGAATATCTCAACCG 57.800 47.619 0.00 0.00 0.00 4.44
233 234 2.505819 AGGGCAAGAATATCTCAACCGT 59.494 45.455 0.00 0.00 0.00 4.83
234 235 3.709653 AGGGCAAGAATATCTCAACCGTA 59.290 43.478 0.00 0.00 0.00 4.02
235 236 4.348168 AGGGCAAGAATATCTCAACCGTAT 59.652 41.667 0.00 0.00 0.00 3.06
236 237 4.691216 GGGCAAGAATATCTCAACCGTATC 59.309 45.833 0.00 0.00 0.00 2.24
237 238 4.691216 GGCAAGAATATCTCAACCGTATCC 59.309 45.833 0.00 0.00 0.00 2.59
238 239 4.386049 GCAAGAATATCTCAACCGTATCCG 59.614 45.833 0.00 0.00 0.00 4.18
239 240 4.175787 AGAATATCTCAACCGTATCCGC 57.824 45.455 0.00 0.00 0.00 5.54
240 241 3.827302 AGAATATCTCAACCGTATCCGCT 59.173 43.478 0.00 0.00 0.00 5.52
241 242 5.008331 AGAATATCTCAACCGTATCCGCTA 58.992 41.667 0.00 0.00 0.00 4.26
242 243 5.652891 AGAATATCTCAACCGTATCCGCTAT 59.347 40.000 0.00 0.00 0.00 2.97
243 244 6.827251 AGAATATCTCAACCGTATCCGCTATA 59.173 38.462 0.00 0.00 0.00 1.31
244 245 4.698583 ATCTCAACCGTATCCGCTATAC 57.301 45.455 0.00 0.00 37.66 1.47
245 246 3.479489 TCTCAACCGTATCCGCTATACA 58.521 45.455 6.82 0.00 40.56 2.29
246 247 4.077108 TCTCAACCGTATCCGCTATACAT 58.923 43.478 6.82 0.00 40.56 2.29
247 248 4.082949 TCTCAACCGTATCCGCTATACATG 60.083 45.833 0.00 0.00 40.56 3.21
248 249 3.057104 TCAACCGTATCCGCTATACATGG 60.057 47.826 0.00 3.82 40.56 3.66
249 250 2.799017 ACCGTATCCGCTATACATGGA 58.201 47.619 0.00 0.00 40.56 3.41
250 251 3.159472 ACCGTATCCGCTATACATGGAA 58.841 45.455 0.00 0.00 40.56 3.53
251 252 3.575256 ACCGTATCCGCTATACATGGAAA 59.425 43.478 0.00 0.00 40.56 3.13
252 253 4.174009 CCGTATCCGCTATACATGGAAAG 58.826 47.826 0.00 0.00 40.56 2.62
253 254 4.174009 CGTATCCGCTATACATGGAAAGG 58.826 47.826 0.00 0.00 40.56 3.11
254 255 4.082408 CGTATCCGCTATACATGGAAAGGA 60.082 45.833 0.00 0.00 40.56 3.36
255 256 5.394224 CGTATCCGCTATACATGGAAAGGAT 60.394 44.000 10.42 10.42 40.56 3.24
256 257 4.537135 TCCGCTATACATGGAAAGGATC 57.463 45.455 0.00 0.00 0.00 3.36
257 258 3.056821 TCCGCTATACATGGAAAGGATCG 60.057 47.826 0.00 0.00 0.00 3.69
258 259 3.254060 CGCTATACATGGAAAGGATCGG 58.746 50.000 0.00 0.00 0.00 4.18
259 260 3.600388 GCTATACATGGAAAGGATCGGG 58.400 50.000 0.00 0.00 0.00 5.14
260 261 3.260884 GCTATACATGGAAAGGATCGGGA 59.739 47.826 0.00 0.00 0.00 5.14
261 262 4.621747 GCTATACATGGAAAGGATCGGGAG 60.622 50.000 0.00 0.00 0.00 4.30
262 263 1.879575 ACATGGAAAGGATCGGGAGA 58.120 50.000 0.00 0.00 46.90 3.71
276 277 4.468765 TCGGGAGATATCCGTAGACTAG 57.531 50.000 0.00 0.00 46.82 2.57
277 278 3.197333 TCGGGAGATATCCGTAGACTAGG 59.803 52.174 0.00 0.00 46.82 3.02
278 279 3.197333 CGGGAGATATCCGTAGACTAGGA 59.803 52.174 0.00 3.84 42.33 2.94
279 280 4.323333 CGGGAGATATCCGTAGACTAGGAA 60.323 50.000 0.00 0.00 42.33 3.36
280 281 5.568392 GGGAGATATCCGTAGACTAGGAAA 58.432 45.833 0.00 0.00 40.32 3.13
281 282 5.415389 GGGAGATATCCGTAGACTAGGAAAC 59.585 48.000 0.00 1.09 40.32 2.78
282 283 6.002704 GGAGATATCCGTAGACTAGGAAACA 58.997 44.000 3.72 0.00 40.32 2.83
283 284 6.489361 GGAGATATCCGTAGACTAGGAAACAA 59.511 42.308 3.72 0.00 40.32 2.83
284 285 7.177041 GGAGATATCCGTAGACTAGGAAACAAT 59.823 40.741 3.72 0.00 40.32 2.71
285 286 9.228949 GAGATATCCGTAGACTAGGAAACAATA 57.771 37.037 3.72 0.00 40.32 1.90
286 287 9.584008 AGATATCCGTAGACTAGGAAACAATAA 57.416 33.333 3.72 0.00 40.32 1.40
289 290 8.943909 ATCCGTAGACTAGGAAACAATAAAAG 57.056 34.615 3.72 0.00 40.32 2.27
290 291 8.125978 TCCGTAGACTAGGAAACAATAAAAGA 57.874 34.615 3.72 0.00 32.86 2.52
291 292 8.587608 TCCGTAGACTAGGAAACAATAAAAGAA 58.412 33.333 3.72 0.00 32.86 2.52
292 293 8.870879 CCGTAGACTAGGAAACAATAAAAGAAG 58.129 37.037 3.72 0.00 0.00 2.85
293 294 9.635520 CGTAGACTAGGAAACAATAAAAGAAGA 57.364 33.333 0.00 0.00 0.00 2.87
296 297 9.674068 AGACTAGGAAACAATAAAAGAAGATCC 57.326 33.333 0.00 0.00 0.00 3.36
297 298 9.674068 GACTAGGAAACAATAAAAGAAGATCCT 57.326 33.333 0.00 0.00 38.31 3.24
303 304 9.561270 GAAACAATAAAAGAAGATCCTAACTGC 57.439 33.333 0.00 0.00 0.00 4.40
304 305 7.631717 ACAATAAAAGAAGATCCTAACTGCC 57.368 36.000 0.00 0.00 0.00 4.85
305 306 7.406104 ACAATAAAAGAAGATCCTAACTGCCT 58.594 34.615 0.00 0.00 0.00 4.75
306 307 8.548877 ACAATAAAAGAAGATCCTAACTGCCTA 58.451 33.333 0.00 0.00 0.00 3.93
307 308 9.396022 CAATAAAAGAAGATCCTAACTGCCTAA 57.604 33.333 0.00 0.00 0.00 2.69
308 309 9.620259 AATAAAAGAAGATCCTAACTGCCTAAG 57.380 33.333 0.00 0.00 0.00 2.18
309 310 6.628644 AAAGAAGATCCTAACTGCCTAAGT 57.371 37.500 0.00 0.00 42.60 2.24
310 311 7.735326 AAAGAAGATCCTAACTGCCTAAGTA 57.265 36.000 0.00 0.00 38.56 2.24
311 312 6.718522 AGAAGATCCTAACTGCCTAAGTAC 57.281 41.667 0.00 0.00 38.56 2.73
312 313 6.195700 AGAAGATCCTAACTGCCTAAGTACA 58.804 40.000 0.00 0.00 38.56 2.90
313 314 6.841755 AGAAGATCCTAACTGCCTAAGTACAT 59.158 38.462 0.00 0.00 38.56 2.29
314 315 6.412362 AGATCCTAACTGCCTAAGTACATG 57.588 41.667 0.00 0.00 38.56 3.21
315 316 5.900123 AGATCCTAACTGCCTAAGTACATGT 59.100 40.000 2.69 2.69 38.56 3.21
316 317 5.339008 TCCTAACTGCCTAAGTACATGTG 57.661 43.478 9.11 0.00 38.56 3.21
317 318 5.020795 TCCTAACTGCCTAAGTACATGTGA 58.979 41.667 9.11 0.00 38.56 3.58
318 319 5.661312 TCCTAACTGCCTAAGTACATGTGAT 59.339 40.000 9.11 0.00 38.56 3.06
319 320 5.986135 CCTAACTGCCTAAGTACATGTGATC 59.014 44.000 9.11 0.00 38.56 2.92
320 321 5.420725 AACTGCCTAAGTACATGTGATCA 57.579 39.130 9.11 0.00 38.56 2.92
321 322 5.620738 ACTGCCTAAGTACATGTGATCAT 57.379 39.130 9.11 0.00 37.36 2.45
322 323 5.819379 AACTGCCTAAGTACATGTGATCATG 59.181 40.000 9.11 6.65 46.31 3.07
323 324 6.352137 AACTGCCTAAGTACATGTGATCATGA 60.352 38.462 9.11 0.00 45.06 3.07
324 325 8.114201 AACTGCCTAAGTACATGTGATCATGAG 61.114 40.741 9.11 0.00 45.06 2.90
336 337 7.783090 ATGTGATCATGAGTATCTCAACAAC 57.217 36.000 0.00 0.73 44.04 3.32
337 338 6.700352 TGTGATCATGAGTATCTCAACAACA 58.300 36.000 0.00 2.91 44.04 3.33
338 339 7.160726 TGTGATCATGAGTATCTCAACAACAA 58.839 34.615 0.00 0.00 44.04 2.83
339 340 7.825761 TGTGATCATGAGTATCTCAACAACAAT 59.174 33.333 0.00 0.00 44.04 2.71
340 341 8.121086 GTGATCATGAGTATCTCAACAACAATG 58.879 37.037 0.00 0.00 44.04 2.82
341 342 6.426980 TCATGAGTATCTCAACAACAATGC 57.573 37.500 3.58 0.00 44.04 3.56
342 343 5.939296 TCATGAGTATCTCAACAACAATGCA 59.061 36.000 3.58 0.00 44.04 3.96
343 344 6.600427 TCATGAGTATCTCAACAACAATGCAT 59.400 34.615 0.00 0.00 44.04 3.96
344 345 6.426980 TGAGTATCTCAACAACAATGCATC 57.573 37.500 0.00 0.00 37.57 3.91
345 346 6.175471 TGAGTATCTCAACAACAATGCATCT 58.825 36.000 0.00 0.00 37.57 2.90
346 347 6.656270 TGAGTATCTCAACAACAATGCATCTT 59.344 34.615 0.00 0.00 37.57 2.40
347 348 7.175467 TGAGTATCTCAACAACAATGCATCTTT 59.825 33.333 0.00 0.00 37.57 2.52
348 349 7.310664 AGTATCTCAACAACAATGCATCTTTG 58.689 34.615 15.40 15.40 0.00 2.77
359 360 2.284263 GCATCTTTGCTTAGGGTTGC 57.716 50.000 0.00 0.00 45.77 4.17
360 361 1.545582 GCATCTTTGCTTAGGGTTGCA 59.454 47.619 0.00 0.00 45.77 4.08
361 362 2.672195 GCATCTTTGCTTAGGGTTGCAC 60.672 50.000 0.00 0.00 45.77 4.57
362 363 2.656947 TCTTTGCTTAGGGTTGCACT 57.343 45.000 0.00 0.00 39.05 4.40
363 364 2.504367 TCTTTGCTTAGGGTTGCACTC 58.496 47.619 0.00 0.00 39.05 3.51
364 365 1.197721 CTTTGCTTAGGGTTGCACTCG 59.802 52.381 0.00 0.00 39.05 4.18
365 366 0.394938 TTGCTTAGGGTTGCACTCGA 59.605 50.000 0.00 0.00 39.05 4.04
366 367 0.320421 TGCTTAGGGTTGCACTCGAC 60.320 55.000 0.00 0.00 33.94 4.20
367 368 1.352156 GCTTAGGGTTGCACTCGACG 61.352 60.000 0.00 0.00 0.00 5.12
368 369 1.352156 CTTAGGGTTGCACTCGACGC 61.352 60.000 0.00 0.00 39.20 5.19
369 370 2.089887 TTAGGGTTGCACTCGACGCA 62.090 55.000 6.15 0.65 40.81 5.24
370 371 2.486636 TAGGGTTGCACTCGACGCAG 62.487 60.000 6.15 0.00 41.18 5.18
371 372 3.414700 GGTTGCACTCGACGCAGG 61.415 66.667 5.04 0.00 41.18 4.85
372 373 3.414700 GTTGCACTCGACGCAGGG 61.415 66.667 5.04 0.00 41.18 4.45
373 374 3.923864 TTGCACTCGACGCAGGGT 61.924 61.111 5.04 0.00 41.18 4.34
374 375 4.662961 TGCACTCGACGCAGGGTG 62.663 66.667 6.39 6.39 33.55 4.61
375 376 4.664677 GCACTCGACGCAGGGTGT 62.665 66.667 11.60 0.00 32.90 4.16
376 377 2.959372 CACTCGACGCAGGGTGTA 59.041 61.111 0.00 0.00 0.00 2.90
377 378 1.287815 CACTCGACGCAGGGTGTAA 59.712 57.895 0.00 0.00 0.00 2.41
378 379 0.108804 CACTCGACGCAGGGTGTAAT 60.109 55.000 0.00 0.00 0.00 1.89
379 380 0.606604 ACTCGACGCAGGGTGTAATT 59.393 50.000 0.00 0.00 0.00 1.40
380 381 1.278238 CTCGACGCAGGGTGTAATTC 58.722 55.000 0.00 0.00 0.00 2.17
381 382 0.892755 TCGACGCAGGGTGTAATTCT 59.107 50.000 0.00 0.00 0.00 2.40
382 383 1.274167 TCGACGCAGGGTGTAATTCTT 59.726 47.619 0.00 0.00 0.00 2.52
383 384 2.073816 CGACGCAGGGTGTAATTCTTT 58.926 47.619 0.00 0.00 0.00 2.52
384 385 2.159707 CGACGCAGGGTGTAATTCTTTG 60.160 50.000 0.00 0.00 0.00 2.77
385 386 1.539827 ACGCAGGGTGTAATTCTTTGC 59.460 47.619 0.00 0.00 0.00 3.68
386 387 1.135402 CGCAGGGTGTAATTCTTTGCC 60.135 52.381 0.00 0.00 0.00 4.52
387 388 2.171003 GCAGGGTGTAATTCTTTGCCT 58.829 47.619 0.00 0.00 0.00 4.75
388 389 2.094545 GCAGGGTGTAATTCTTTGCCTG 60.095 50.000 0.00 0.00 0.00 4.85
389 390 3.420893 CAGGGTGTAATTCTTTGCCTGA 58.579 45.455 0.00 0.00 0.00 3.86
390 391 3.441572 CAGGGTGTAATTCTTTGCCTGAG 59.558 47.826 0.00 0.00 0.00 3.35
391 392 3.330701 AGGGTGTAATTCTTTGCCTGAGA 59.669 43.478 0.00 0.00 0.00 3.27
392 393 4.018050 AGGGTGTAATTCTTTGCCTGAGAT 60.018 41.667 0.00 0.00 0.00 2.75
393 394 4.706962 GGGTGTAATTCTTTGCCTGAGATT 59.293 41.667 0.00 0.00 0.00 2.40
394 395 5.185828 GGGTGTAATTCTTTGCCTGAGATTT 59.814 40.000 0.00 0.00 0.00 2.17
395 396 6.295292 GGGTGTAATTCTTTGCCTGAGATTTT 60.295 38.462 0.00 0.00 0.00 1.82
396 397 6.808704 GGTGTAATTCTTTGCCTGAGATTTTC 59.191 38.462 0.00 0.00 0.00 2.29
397 398 7.309438 GGTGTAATTCTTTGCCTGAGATTTTCT 60.309 37.037 0.00 0.00 0.00 2.52
398 399 7.540055 GTGTAATTCTTTGCCTGAGATTTTCTG 59.460 37.037 0.00 0.00 0.00 3.02
399 400 5.656213 ATTCTTTGCCTGAGATTTTCTGG 57.344 39.130 0.00 0.00 45.20 3.86
405 406 2.005451 CCTGAGATTTTCTGGCACTCG 58.995 52.381 0.00 0.00 37.98 4.18
406 407 2.354103 CCTGAGATTTTCTGGCACTCGA 60.354 50.000 0.00 0.00 37.98 4.04
407 408 2.670414 CTGAGATTTTCTGGCACTCGAC 59.330 50.000 0.00 0.00 0.00 4.20
408 409 1.656095 GAGATTTTCTGGCACTCGACG 59.344 52.381 0.00 0.00 0.00 5.12
409 410 1.000955 AGATTTTCTGGCACTCGACGT 59.999 47.619 0.00 0.00 0.00 4.34
410 411 2.230508 AGATTTTCTGGCACTCGACGTA 59.769 45.455 0.00 0.00 0.00 3.57
411 412 2.060326 TTTTCTGGCACTCGACGTAG 57.940 50.000 0.00 0.00 0.00 3.51
412 413 0.242825 TTTCTGGCACTCGACGTAGG 59.757 55.000 0.00 0.00 0.00 3.18
413 414 1.592400 TTCTGGCACTCGACGTAGGG 61.592 60.000 0.00 0.00 0.00 3.53
414 415 2.282674 TGGCACTCGACGTAGGGT 60.283 61.111 0.00 0.00 0.00 4.34
415 416 2.181021 GGCACTCGACGTAGGGTG 59.819 66.667 22.71 22.71 0.00 4.61
416 417 2.633509 GGCACTCGACGTAGGGTGT 61.634 63.158 26.38 6.59 32.90 4.16
417 418 1.308069 GGCACTCGACGTAGGGTGTA 61.308 60.000 26.38 0.00 32.90 2.90
418 419 0.523072 GCACTCGACGTAGGGTGTAA 59.477 55.000 26.38 0.00 32.90 2.41
419 420 1.133790 GCACTCGACGTAGGGTGTAAT 59.866 52.381 26.38 0.00 32.90 1.89
420 421 2.416431 GCACTCGACGTAGGGTGTAATT 60.416 50.000 26.38 0.00 32.90 1.40
421 422 3.432782 CACTCGACGTAGGGTGTAATTC 58.567 50.000 19.34 0.00 0.00 2.17
422 423 3.128242 CACTCGACGTAGGGTGTAATTCT 59.872 47.826 19.34 0.00 0.00 2.40
423 424 4.333649 CACTCGACGTAGGGTGTAATTCTA 59.666 45.833 19.34 0.00 0.00 2.10
424 425 4.943705 ACTCGACGTAGGGTGTAATTCTAA 59.056 41.667 0.00 0.00 0.00 2.10
425 426 5.591877 ACTCGACGTAGGGTGTAATTCTAAT 59.408 40.000 0.00 0.00 0.00 1.73
426 427 6.767902 ACTCGACGTAGGGTGTAATTCTAATA 59.232 38.462 0.00 0.00 0.00 0.98
427 428 7.041508 ACTCGACGTAGGGTGTAATTCTAATAG 60.042 40.741 0.00 0.00 0.00 1.73
428 429 6.767902 TCGACGTAGGGTGTAATTCTAATAGT 59.232 38.462 0.00 0.00 0.00 2.12
429 430 6.854892 CGACGTAGGGTGTAATTCTAATAGTG 59.145 42.308 0.00 0.00 0.00 2.74
430 431 7.467811 CGACGTAGGGTGTAATTCTAATAGTGT 60.468 40.741 0.00 0.00 0.00 3.55
431 432 8.071177 ACGTAGGGTGTAATTCTAATAGTGTT 57.929 34.615 0.00 0.00 0.00 3.32
432 433 9.189156 ACGTAGGGTGTAATTCTAATAGTGTTA 57.811 33.333 0.00 0.00 0.00 2.41
433 434 9.674824 CGTAGGGTGTAATTCTAATAGTGTTAG 57.325 37.037 0.36 0.36 0.00 2.34
434 435 9.473640 GTAGGGTGTAATTCTAATAGTGTTAGC 57.526 37.037 1.91 0.00 0.00 3.09
435 436 8.086143 AGGGTGTAATTCTAATAGTGTTAGCA 57.914 34.615 1.91 0.00 0.00 3.49
436 437 7.985752 AGGGTGTAATTCTAATAGTGTTAGCAC 59.014 37.037 0.72 0.72 45.57 4.40
446 447 9.967346 TCTAATAGTGTTAGCACAATATGTCTC 57.033 33.333 12.54 0.00 42.13 3.36
447 448 9.750125 CTAATAGTGTTAGCACAATATGTCTCA 57.250 33.333 12.54 0.00 42.13 3.27
448 449 8.425577 AATAGTGTTAGCACAATATGTCTCAC 57.574 34.615 12.54 0.00 42.13 3.51
449 450 5.470845 GTGTTAGCACAATATGTCTCACC 57.529 43.478 4.65 0.00 44.64 4.02
450 451 4.935205 GTGTTAGCACAATATGTCTCACCA 59.065 41.667 4.65 0.00 44.64 4.17
451 452 4.935205 TGTTAGCACAATATGTCTCACCAC 59.065 41.667 0.00 0.00 0.00 4.16
452 453 3.988976 AGCACAATATGTCTCACCACT 57.011 42.857 0.00 0.00 0.00 4.00
453 454 4.292186 AGCACAATATGTCTCACCACTT 57.708 40.909 0.00 0.00 0.00 3.16
454 455 4.655963 AGCACAATATGTCTCACCACTTT 58.344 39.130 0.00 0.00 0.00 2.66
455 456 5.072741 AGCACAATATGTCTCACCACTTTT 58.927 37.500 0.00 0.00 0.00 2.27
456 457 5.536161 AGCACAATATGTCTCACCACTTTTT 59.464 36.000 0.00 0.00 0.00 1.94
457 458 6.714810 AGCACAATATGTCTCACCACTTTTTA 59.285 34.615 0.00 0.00 0.00 1.52
458 459 7.023575 GCACAATATGTCTCACCACTTTTTAG 58.976 38.462 0.00 0.00 0.00 1.85
459 460 7.530010 CACAATATGTCTCACCACTTTTTAGG 58.470 38.462 0.00 0.00 0.00 2.69
460 461 7.390440 CACAATATGTCTCACCACTTTTTAGGA 59.610 37.037 0.00 0.00 0.00 2.94
461 462 7.942341 ACAATATGTCTCACCACTTTTTAGGAA 59.058 33.333 0.00 0.00 0.00 3.36
462 463 8.960591 CAATATGTCTCACCACTTTTTAGGAAT 58.039 33.333 0.00 0.00 0.00 3.01
464 465 9.838339 ATATGTCTCACCACTTTTTAGGAATAG 57.162 33.333 0.00 0.00 0.00 1.73
465 466 5.938125 TGTCTCACCACTTTTTAGGAATAGC 59.062 40.000 0.00 0.00 0.00 2.97
466 467 6.174049 GTCTCACCACTTTTTAGGAATAGCT 58.826 40.000 0.00 0.00 0.00 3.32
467 468 7.038587 TGTCTCACCACTTTTTAGGAATAGCTA 60.039 37.037 0.00 0.00 0.00 3.32
468 469 7.492994 GTCTCACCACTTTTTAGGAATAGCTAG 59.507 40.741 0.00 0.00 0.00 3.42
469 470 7.180408 TCTCACCACTTTTTAGGAATAGCTAGT 59.820 37.037 0.00 0.00 0.00 2.57
470 471 7.686434 TCACCACTTTTTAGGAATAGCTAGTT 58.314 34.615 0.00 0.00 0.00 2.24
471 472 8.818860 TCACCACTTTTTAGGAATAGCTAGTTA 58.181 33.333 0.00 0.00 0.00 2.24
472 473 9.614792 CACCACTTTTTAGGAATAGCTAGTTAT 57.385 33.333 0.00 0.00 0.00 1.89
541 542 7.786178 TCTCGTATCCAAATTACATGAAAGG 57.214 36.000 0.00 0.00 0.00 3.11
542 543 7.335627 TCTCGTATCCAAATTACATGAAAGGT 58.664 34.615 0.00 0.00 32.53 3.50
592 594 6.318648 CACATACATGCCCTTATACACTTTGT 59.681 38.462 0.00 0.00 0.00 2.83
631 633 1.129811 GGATTTGTACAGAAACCGCCG 59.870 52.381 0.00 0.00 0.00 6.46
635 637 0.387112 TGTACAGAAACCGCCGTACG 60.387 55.000 8.69 8.69 37.60 3.67
709 713 1.064166 CATTCCATCTTGCCCTGACCT 60.064 52.381 0.00 0.00 0.00 3.85
786 792 4.022935 CAGAGAGACAGAGAGCATGTATCC 60.023 50.000 0.00 0.00 39.21 2.59
792 798 2.636403 CAGAGAGCATGTATCCCATCCA 59.364 50.000 0.00 0.00 0.00 3.41
794 800 3.915073 AGAGAGCATGTATCCCATCCATT 59.085 43.478 0.00 0.00 0.00 3.16
934 940 1.674359 CGGCCTATTTATGCACACCA 58.326 50.000 0.00 0.00 0.00 4.17
957 967 1.072505 ACAAATCTCGGGCGGTGTT 59.927 52.632 0.00 0.00 0.00 3.32
982 992 2.112297 GGTGGTTCCGGCTCACAA 59.888 61.111 18.45 0.00 33.45 3.33
988 998 1.009389 GTTCCGGCTCACAACTCTCG 61.009 60.000 0.00 0.00 0.00 4.04
991 1001 2.091112 CGGCTCACAACTCTCGCTG 61.091 63.158 0.00 0.00 0.00 5.18
992 1002 2.386660 GGCTCACAACTCTCGCTGC 61.387 63.158 0.00 0.00 0.00 5.25
1033 1049 3.069980 GCGTCTGGCGTGATCTCCT 62.070 63.158 2.76 0.00 43.66 3.69
1248 1288 2.938798 ATCCGGGCCAACTTCCCA 60.939 61.111 4.39 0.00 44.11 4.37
1272 1312 3.647771 GGCAAGGACTTCCCCGGT 61.648 66.667 0.00 0.00 36.42 5.28
1326 1366 2.829458 AGCGTCGACCTCCTAGGC 60.829 66.667 10.58 5.57 39.63 3.93
1331 1371 0.386113 GTCGACCTCCTAGGCATGTC 59.614 60.000 3.51 9.27 39.63 3.06
1332 1372 0.259065 TCGACCTCCTAGGCATGTCT 59.741 55.000 4.63 4.63 39.63 3.41
1333 1373 1.493446 TCGACCTCCTAGGCATGTCTA 59.507 52.381 6.89 6.89 39.63 2.59
1336 1376 3.031736 GACCTCCTAGGCATGTCTACAA 58.968 50.000 2.01 0.00 39.63 2.41
1337 1377 3.643792 GACCTCCTAGGCATGTCTACAAT 59.356 47.826 2.01 0.00 39.63 2.71
1340 1380 6.562228 ACCTCCTAGGCATGTCTACAATATA 58.438 40.000 2.01 0.00 39.63 0.86
1375 1428 5.668471 TGAAAATGCAGTTTCAATTCACCA 58.332 33.333 33.07 13.35 42.94 4.17
1376 1429 5.754406 TGAAAATGCAGTTTCAATTCACCAG 59.246 36.000 33.07 0.00 42.94 4.00
1377 1430 4.942761 AATGCAGTTTCAATTCACCAGT 57.057 36.364 0.00 0.00 0.00 4.00
1382 1435 7.144722 TGCAGTTTCAATTCACCAGTAATAG 57.855 36.000 0.00 0.00 0.00 1.73
1383 1436 6.714810 TGCAGTTTCAATTCACCAGTAATAGT 59.285 34.615 0.00 0.00 0.00 2.12
1390 1443 7.658261 TCAATTCACCAGTAATAGTATCTCCG 58.342 38.462 0.00 0.00 0.00 4.63
1393 1446 6.879276 TCACCAGTAATAGTATCTCCGAAG 57.121 41.667 0.00 0.00 0.00 3.79
1408 1461 0.449388 CGAAGCAGCCAAGGATCAAC 59.551 55.000 0.00 0.00 0.00 3.18
1409 1462 0.449388 GAAGCAGCCAAGGATCAACG 59.551 55.000 0.00 0.00 0.00 4.10
1410 1463 0.036732 AAGCAGCCAAGGATCAACGA 59.963 50.000 0.00 0.00 0.00 3.85
1411 1464 0.254178 AGCAGCCAAGGATCAACGAT 59.746 50.000 0.00 0.00 0.00 3.73
1412 1465 0.379669 GCAGCCAAGGATCAACGATG 59.620 55.000 0.00 0.00 0.00 3.84
1413 1466 1.019673 CAGCCAAGGATCAACGATGG 58.980 55.000 0.00 0.00 0.00 3.51
1414 1467 0.620556 AGCCAAGGATCAACGATGGT 59.379 50.000 0.00 0.00 33.63 3.55
1428 1481 5.348997 TCAACGATGGTTTTGTTTTGGAAAC 59.651 36.000 0.00 0.00 32.98 2.78
1501 1554 1.519719 CTGAAGAAGGGCCTCTCCG 59.480 63.158 6.46 0.00 34.94 4.63
1563 1616 3.723348 GGCTTCGACAACGCCACC 61.723 66.667 8.78 0.00 43.25 4.61
1628 1681 3.165875 TGTTCCAGGAGTACAAGGAGAG 58.834 50.000 0.00 0.00 0.00 3.20
2013 2066 0.534427 TCCTCGCCGACGTGATCTAT 60.534 55.000 0.00 0.00 41.18 1.98
2022 2075 1.105167 ACGTGATCTATCGGCCGGAA 61.105 55.000 27.83 13.00 0.00 4.30
2226 2279 4.550422 TCAGATTCATGCACTAGCGATAC 58.450 43.478 0.00 0.00 46.23 2.24
2252 2305 7.255942 CCAACTTTCTTTTCTCTCTCTCTCTCT 60.256 40.741 0.00 0.00 0.00 3.10
2292 2346 7.804843 ACAGTAGTATAATTCACTAGCGAGT 57.195 36.000 0.00 0.00 35.80 4.18
2293 2347 8.223177 ACAGTAGTATAATTCACTAGCGAGTT 57.777 34.615 0.00 0.00 31.73 3.01
2330 2384 5.123661 GGTAATAGGAGTACGTCATAGGAGC 59.876 48.000 0.00 0.00 0.00 4.70
2336 2390 2.141517 GTACGTCATAGGAGCGCTCTA 58.858 52.381 34.46 24.07 0.00 2.43
2482 2538 3.165498 GCTAACGCCCACAGTTCG 58.835 61.111 0.00 0.00 33.42 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.117051 CACCCCTACTTCCCTAACCTC 58.883 57.143 0.00 0.00 0.00 3.85
1 2 1.274242 CCACCCCTACTTCCCTAACCT 60.274 57.143 0.00 0.00 0.00 3.50
2 3 1.210538 CCACCCCTACTTCCCTAACC 58.789 60.000 0.00 0.00 0.00 2.85
3 4 1.210538 CCCACCCCTACTTCCCTAAC 58.789 60.000 0.00 0.00 0.00 2.34
7 8 3.793888 CGCCCACCCCTACTTCCC 61.794 72.222 0.00 0.00 0.00 3.97
8 9 3.793888 CCGCCCACCCCTACTTCC 61.794 72.222 0.00 0.00 0.00 3.46
9 10 4.484872 GCCGCCCACCCCTACTTC 62.485 72.222 0.00 0.00 0.00 3.01
61 62 4.463879 CAGTCCCTCCTGCCGCTG 62.464 72.222 0.00 0.00 0.00 5.18
63 64 4.767255 CACAGTCCCTCCTGCCGC 62.767 72.222 0.00 0.00 35.83 6.53
64 65 4.087892 CCACAGTCCCTCCTGCCG 62.088 72.222 0.00 0.00 35.83 5.69
65 66 4.416738 GCCACAGTCCCTCCTGCC 62.417 72.222 0.00 0.00 35.83 4.85
66 67 4.767255 CGCCACAGTCCCTCCTGC 62.767 72.222 0.00 0.00 35.83 4.85
67 68 4.087892 CCGCCACAGTCCCTCCTG 62.088 72.222 0.00 0.00 38.45 3.86
70 71 4.767255 CTGCCGCCACAGTCCCTC 62.767 72.222 0.00 0.00 32.78 4.30
89 90 4.012895 CAGTTGTCGCCACGCACC 62.013 66.667 0.00 0.00 0.00 5.01
90 91 4.012895 CCAGTTGTCGCCACGCAC 62.013 66.667 0.00 0.00 0.00 5.34
117 118 4.807039 TCCTAACGCTTCCGCCGC 62.807 66.667 0.00 0.00 38.22 6.53
118 119 1.693083 CTTTCCTAACGCTTCCGCCG 61.693 60.000 0.00 0.00 38.22 6.46
119 120 0.390735 TCTTTCCTAACGCTTCCGCC 60.391 55.000 0.00 0.00 38.22 6.13
120 121 1.000145 CTCTTTCCTAACGCTTCCGC 59.000 55.000 0.00 0.00 38.22 5.54
121 122 2.649331 TCTCTTTCCTAACGCTTCCG 57.351 50.000 0.00 0.00 41.14 4.30
122 123 2.609916 GCATCTCTTTCCTAACGCTTCC 59.390 50.000 0.00 0.00 0.00 3.46
123 124 2.282820 CGCATCTCTTTCCTAACGCTTC 59.717 50.000 0.00 0.00 0.00 3.86
124 125 2.271800 CGCATCTCTTTCCTAACGCTT 58.728 47.619 0.00 0.00 0.00 4.68
125 126 1.471676 CCGCATCTCTTTCCTAACGCT 60.472 52.381 0.00 0.00 0.00 5.07
126 127 0.931005 CCGCATCTCTTTCCTAACGC 59.069 55.000 0.00 0.00 0.00 4.84
127 128 2.295253 ACCGCATCTCTTTCCTAACG 57.705 50.000 0.00 0.00 0.00 3.18
128 129 4.985409 CAGATACCGCATCTCTTTCCTAAC 59.015 45.833 0.00 0.00 42.40 2.34
129 130 4.893524 TCAGATACCGCATCTCTTTCCTAA 59.106 41.667 0.00 0.00 42.40 2.69
130 131 4.470602 TCAGATACCGCATCTCTTTCCTA 58.529 43.478 0.00 0.00 42.40 2.94
131 132 3.300388 TCAGATACCGCATCTCTTTCCT 58.700 45.455 0.00 0.00 42.40 3.36
132 133 3.735237 TCAGATACCGCATCTCTTTCC 57.265 47.619 0.00 0.00 42.40 3.13
133 134 5.164954 GGTATCAGATACCGCATCTCTTTC 58.835 45.833 21.68 0.00 45.20 2.62
134 135 5.140747 GGTATCAGATACCGCATCTCTTT 57.859 43.478 21.68 0.00 45.20 2.52
135 136 4.792521 GGTATCAGATACCGCATCTCTT 57.207 45.455 21.68 0.00 45.20 2.85
145 146 5.635280 CGACAATCCACATGGTATCAGATAC 59.365 44.000 11.71 11.71 36.34 2.24
146 147 5.538433 TCGACAATCCACATGGTATCAGATA 59.462 40.000 0.00 0.00 36.34 1.98
147 148 4.344968 TCGACAATCCACATGGTATCAGAT 59.655 41.667 0.00 0.00 36.34 2.90
148 149 3.704061 TCGACAATCCACATGGTATCAGA 59.296 43.478 0.00 0.00 36.34 3.27
149 150 4.058721 TCGACAATCCACATGGTATCAG 57.941 45.455 0.00 0.00 36.34 2.90
150 151 4.687901 ATCGACAATCCACATGGTATCA 57.312 40.909 0.00 0.00 36.34 2.15
151 152 6.166279 ACATATCGACAATCCACATGGTATC 58.834 40.000 0.00 0.00 36.34 2.24
152 153 6.114187 ACATATCGACAATCCACATGGTAT 57.886 37.500 0.00 0.00 36.34 2.73
153 154 5.545063 ACATATCGACAATCCACATGGTA 57.455 39.130 0.00 0.00 36.34 3.25
154 155 4.422073 ACATATCGACAATCCACATGGT 57.578 40.909 0.00 0.00 36.34 3.55
155 156 4.815846 TGAACATATCGACAATCCACATGG 59.184 41.667 0.00 0.00 0.00 3.66
156 157 5.989551 TGAACATATCGACAATCCACATG 57.010 39.130 0.00 0.00 0.00 3.21
157 158 6.767423 TCAATGAACATATCGACAATCCACAT 59.233 34.615 0.00 0.00 0.00 3.21
158 159 6.112058 TCAATGAACATATCGACAATCCACA 58.888 36.000 0.00 0.00 0.00 4.17
159 160 6.603237 TCAATGAACATATCGACAATCCAC 57.397 37.500 0.00 0.00 0.00 4.02
160 161 6.146021 CGATCAATGAACATATCGACAATCCA 59.854 38.462 11.95 0.00 42.88 3.41
161 162 6.146184 ACGATCAATGAACATATCGACAATCC 59.854 38.462 19.73 0.00 42.88 3.01
162 163 7.110179 ACGATCAATGAACATATCGACAATC 57.890 36.000 19.73 3.91 42.88 2.67
163 164 8.763049 ATACGATCAATGAACATATCGACAAT 57.237 30.769 19.73 11.05 42.88 2.71
164 165 9.124807 GTATACGATCAATGAACATATCGACAA 57.875 33.333 19.73 9.83 42.88 3.18
165 166 8.512138 AGTATACGATCAATGAACATATCGACA 58.488 33.333 19.73 11.26 42.88 4.35
166 167 8.897457 AGTATACGATCAATGAACATATCGAC 57.103 34.615 19.73 11.53 42.88 4.20
167 168 7.903431 CGAGTATACGATCAATGAACATATCGA 59.097 37.037 19.73 0.00 42.88 3.59
168 169 7.692705 ACGAGTATACGATCAATGAACATATCG 59.307 37.037 14.39 14.39 45.06 2.92
169 170 8.897457 ACGAGTATACGATCAATGAACATATC 57.103 34.615 0.00 0.00 37.03 1.63
170 171 9.989869 CTACGAGTATACGATCAATGAACATAT 57.010 33.333 0.00 0.00 37.03 1.78
171 172 7.961283 GCTACGAGTATACGATCAATGAACATA 59.039 37.037 0.00 0.00 37.03 2.29
172 173 6.802348 GCTACGAGTATACGATCAATGAACAT 59.198 38.462 0.00 0.00 37.03 2.71
173 174 6.140786 GCTACGAGTATACGATCAATGAACA 58.859 40.000 0.00 0.00 37.03 3.18
174 175 6.140786 TGCTACGAGTATACGATCAATGAAC 58.859 40.000 0.00 0.00 37.03 3.18
175 176 6.308371 TGCTACGAGTATACGATCAATGAA 57.692 37.500 0.00 0.00 37.03 2.57
176 177 5.934935 TGCTACGAGTATACGATCAATGA 57.065 39.130 0.00 0.00 37.03 2.57
177 178 7.241376 TGTATGCTACGAGTATACGATCAATG 58.759 38.462 13.80 0.00 43.75 2.82
178 179 7.373778 TGTATGCTACGAGTATACGATCAAT 57.626 36.000 13.80 0.00 43.75 2.57
179 180 6.790285 TGTATGCTACGAGTATACGATCAA 57.210 37.500 13.80 0.00 43.75 2.57
180 181 6.980051 ATGTATGCTACGAGTATACGATCA 57.020 37.500 13.80 0.00 43.75 2.92
181 182 8.350238 TCTATGTATGCTACGAGTATACGATC 57.650 38.462 13.80 0.00 43.75 3.69
182 183 7.980662 ACTCTATGTATGCTACGAGTATACGAT 59.019 37.037 13.80 11.61 43.75 3.73
183 184 7.275123 CACTCTATGTATGCTACGAGTATACGA 59.725 40.741 13.80 7.88 43.75 3.43
184 185 7.392556 CACTCTATGTATGCTACGAGTATACG 58.607 42.308 13.80 0.00 43.75 3.06
185 186 7.148457 TGCACTCTATGTATGCTACGAGTATAC 60.148 40.741 12.64 12.64 42.00 1.47
186 187 6.877322 TGCACTCTATGTATGCTACGAGTATA 59.123 38.462 0.00 0.00 40.13 1.47
187 188 5.705905 TGCACTCTATGTATGCTACGAGTAT 59.294 40.000 0.00 0.00 40.13 2.12
188 189 5.061179 TGCACTCTATGTATGCTACGAGTA 58.939 41.667 0.00 0.00 40.13 2.59
189 190 3.883489 TGCACTCTATGTATGCTACGAGT 59.117 43.478 0.00 0.00 40.13 4.18
190 191 4.489679 TGCACTCTATGTATGCTACGAG 57.510 45.455 0.00 0.00 40.13 4.18
191 192 4.261614 CCTTGCACTCTATGTATGCTACGA 60.262 45.833 0.00 0.00 40.13 3.43
192 193 3.983988 CCTTGCACTCTATGTATGCTACG 59.016 47.826 0.00 0.00 40.13 3.51
193 194 4.310769 CCCTTGCACTCTATGTATGCTAC 58.689 47.826 0.00 0.00 40.13 3.58
194 195 3.244215 GCCCTTGCACTCTATGTATGCTA 60.244 47.826 0.00 0.00 40.13 3.49
195 196 2.486191 GCCCTTGCACTCTATGTATGCT 60.486 50.000 0.00 0.00 40.13 3.79
196 197 1.876156 GCCCTTGCACTCTATGTATGC 59.124 52.381 0.00 0.00 39.88 3.14
197 198 3.198409 TGCCCTTGCACTCTATGTATG 57.802 47.619 0.00 0.00 44.23 2.39
209 210 3.067320 GGTTGAGATATTCTTGCCCTTGC 59.933 47.826 0.00 0.00 38.26 4.01
210 211 3.313526 CGGTTGAGATATTCTTGCCCTTG 59.686 47.826 0.00 0.00 0.00 3.61
211 212 3.054361 ACGGTTGAGATATTCTTGCCCTT 60.054 43.478 0.00 0.00 0.00 3.95
212 213 2.505819 ACGGTTGAGATATTCTTGCCCT 59.494 45.455 0.00 0.00 0.00 5.19
213 214 2.919228 ACGGTTGAGATATTCTTGCCC 58.081 47.619 0.00 0.00 0.00 5.36
214 215 4.691216 GGATACGGTTGAGATATTCTTGCC 59.309 45.833 0.00 0.00 0.00 4.52
215 216 5.847670 GGATACGGTTGAGATATTCTTGC 57.152 43.478 0.00 0.00 0.00 4.01
232 233 5.401531 TCCTTTCCATGTATAGCGGATAC 57.598 43.478 5.19 5.19 40.90 2.24
233 234 5.163550 CGATCCTTTCCATGTATAGCGGATA 60.164 44.000 0.00 0.00 30.66 2.59
234 235 4.382040 CGATCCTTTCCATGTATAGCGGAT 60.382 45.833 0.00 0.00 33.03 4.18
235 236 3.056821 CGATCCTTTCCATGTATAGCGGA 60.057 47.826 0.00 0.00 0.00 5.54
236 237 3.254060 CGATCCTTTCCATGTATAGCGG 58.746 50.000 0.00 0.00 0.00 5.52
237 238 3.254060 CCGATCCTTTCCATGTATAGCG 58.746 50.000 0.00 0.00 0.00 4.26
238 239 3.260884 TCCCGATCCTTTCCATGTATAGC 59.739 47.826 0.00 0.00 0.00 2.97
239 240 4.772624 TCTCCCGATCCTTTCCATGTATAG 59.227 45.833 0.00 0.00 0.00 1.31
240 241 4.747583 TCTCCCGATCCTTTCCATGTATA 58.252 43.478 0.00 0.00 0.00 1.47
241 242 3.587498 TCTCCCGATCCTTTCCATGTAT 58.413 45.455 0.00 0.00 0.00 2.29
242 243 3.040655 TCTCCCGATCCTTTCCATGTA 57.959 47.619 0.00 0.00 0.00 2.29
243 244 1.879575 TCTCCCGATCCTTTCCATGT 58.120 50.000 0.00 0.00 0.00 3.21
244 245 4.383552 GGATATCTCCCGATCCTTTCCATG 60.384 50.000 2.05 0.00 38.91 3.66
245 246 3.777522 GGATATCTCCCGATCCTTTCCAT 59.222 47.826 2.05 0.00 38.91 3.41
246 247 3.173965 GGATATCTCCCGATCCTTTCCA 58.826 50.000 2.05 0.00 38.91 3.53
247 248 3.897141 GGATATCTCCCGATCCTTTCC 57.103 52.381 2.05 0.00 38.91 3.13
257 258 4.840716 TCCTAGTCTACGGATATCTCCC 57.159 50.000 2.05 0.00 38.45 4.30
258 259 6.002704 TGTTTCCTAGTCTACGGATATCTCC 58.997 44.000 2.05 0.00 38.29 3.71
259 260 7.507733 TTGTTTCCTAGTCTACGGATATCTC 57.492 40.000 2.05 0.00 0.00 2.75
260 261 9.584008 TTATTGTTTCCTAGTCTACGGATATCT 57.416 33.333 2.05 0.00 0.00 1.98
264 265 8.755977 TCTTTTATTGTTTCCTAGTCTACGGAT 58.244 33.333 0.00 0.00 0.00 4.18
265 266 8.125978 TCTTTTATTGTTTCCTAGTCTACGGA 57.874 34.615 0.00 0.00 0.00 4.69
266 267 8.767478 TTCTTTTATTGTTTCCTAGTCTACGG 57.233 34.615 0.00 0.00 0.00 4.02
267 268 9.635520 TCTTCTTTTATTGTTTCCTAGTCTACG 57.364 33.333 0.00 0.00 0.00 3.51
270 271 9.674068 GGATCTTCTTTTATTGTTTCCTAGTCT 57.326 33.333 0.00 0.00 0.00 3.24
271 272 9.674068 AGGATCTTCTTTTATTGTTTCCTAGTC 57.326 33.333 0.00 0.00 29.52 2.59
277 278 9.561270 GCAGTTAGGATCTTCTTTTATTGTTTC 57.439 33.333 0.00 0.00 0.00 2.78
278 279 8.523658 GGCAGTTAGGATCTTCTTTTATTGTTT 58.476 33.333 0.00 0.00 0.00 2.83
279 280 7.890655 AGGCAGTTAGGATCTTCTTTTATTGTT 59.109 33.333 0.00 0.00 0.00 2.83
280 281 7.406104 AGGCAGTTAGGATCTTCTTTTATTGT 58.594 34.615 0.00 0.00 0.00 2.71
281 282 7.872113 AGGCAGTTAGGATCTTCTTTTATTG 57.128 36.000 0.00 0.00 0.00 1.90
282 283 9.620259 CTTAGGCAGTTAGGATCTTCTTTTATT 57.380 33.333 0.00 0.00 0.00 1.40
283 284 8.773216 ACTTAGGCAGTTAGGATCTTCTTTTAT 58.227 33.333 0.00 0.00 27.32 1.40
284 285 8.147244 ACTTAGGCAGTTAGGATCTTCTTTTA 57.853 34.615 0.00 0.00 27.32 1.52
285 286 7.021998 ACTTAGGCAGTTAGGATCTTCTTTT 57.978 36.000 0.00 0.00 27.32 2.27
286 287 6.628644 ACTTAGGCAGTTAGGATCTTCTTT 57.371 37.500 0.00 0.00 27.32 2.52
287 288 6.668283 TGTACTTAGGCAGTTAGGATCTTCTT 59.332 38.462 0.00 0.00 36.88 2.52
288 289 6.195700 TGTACTTAGGCAGTTAGGATCTTCT 58.804 40.000 0.00 0.00 36.88 2.85
289 290 6.466885 TGTACTTAGGCAGTTAGGATCTTC 57.533 41.667 0.00 0.00 36.88 2.87
290 291 6.384305 ACATGTACTTAGGCAGTTAGGATCTT 59.616 38.462 0.00 0.00 36.88 2.40
291 292 5.900123 ACATGTACTTAGGCAGTTAGGATCT 59.100 40.000 0.00 0.00 36.88 2.75
292 293 5.986135 CACATGTACTTAGGCAGTTAGGATC 59.014 44.000 0.00 0.00 36.88 3.36
293 294 5.661312 TCACATGTACTTAGGCAGTTAGGAT 59.339 40.000 0.00 0.00 36.88 3.24
294 295 5.020795 TCACATGTACTTAGGCAGTTAGGA 58.979 41.667 0.00 0.00 36.88 2.94
295 296 5.339008 TCACATGTACTTAGGCAGTTAGG 57.661 43.478 0.00 0.00 36.88 2.69
296 297 6.573434 TGATCACATGTACTTAGGCAGTTAG 58.427 40.000 0.00 0.00 36.88 2.34
297 298 6.538945 TGATCACATGTACTTAGGCAGTTA 57.461 37.500 0.00 0.00 36.88 2.24
298 299 5.420725 TGATCACATGTACTTAGGCAGTT 57.579 39.130 0.00 0.00 36.88 3.16
299 300 5.363101 CATGATCACATGTACTTAGGCAGT 58.637 41.667 0.00 0.00 46.01 4.40
300 301 5.919272 CATGATCACATGTACTTAGGCAG 57.081 43.478 0.00 0.00 46.01 4.85
312 313 7.333323 TGTTGTTGAGATACTCATGATCACAT 58.667 34.615 0.00 0.00 40.39 3.21
313 314 6.700352 TGTTGTTGAGATACTCATGATCACA 58.300 36.000 0.00 0.00 40.39 3.58
314 315 7.601073 TTGTTGTTGAGATACTCATGATCAC 57.399 36.000 0.00 0.00 40.39 3.06
315 316 7.201670 GCATTGTTGTTGAGATACTCATGATCA 60.202 37.037 0.00 0.00 40.39 2.92
316 317 7.130917 GCATTGTTGTTGAGATACTCATGATC 58.869 38.462 0.00 0.00 40.39 2.92
317 318 6.600427 TGCATTGTTGTTGAGATACTCATGAT 59.400 34.615 0.00 0.00 40.39 2.45
318 319 5.939296 TGCATTGTTGTTGAGATACTCATGA 59.061 36.000 0.00 0.00 40.39 3.07
319 320 6.185852 TGCATTGTTGTTGAGATACTCATG 57.814 37.500 2.30 0.00 40.39 3.07
320 321 6.827251 AGATGCATTGTTGTTGAGATACTCAT 59.173 34.615 0.00 0.00 40.39 2.90
321 322 6.175471 AGATGCATTGTTGTTGAGATACTCA 58.825 36.000 0.00 0.00 38.87 3.41
322 323 6.674694 AGATGCATTGTTGTTGAGATACTC 57.325 37.500 0.00 0.00 0.00 2.59
323 324 7.310664 CAAAGATGCATTGTTGTTGAGATACT 58.689 34.615 0.00 0.00 0.00 2.12
324 325 7.502177 CAAAGATGCATTGTTGTTGAGATAC 57.498 36.000 0.00 0.00 0.00 2.24
340 341 4.926668 AGTGCAACCCTAAGCAAAGATGC 61.927 47.826 0.00 0.00 46.79 3.91
341 342 2.821969 AGTGCAACCCTAAGCAAAGATG 59.178 45.455 0.00 0.00 43.20 2.90
342 343 3.084786 GAGTGCAACCCTAAGCAAAGAT 58.915 45.455 0.00 0.00 43.20 2.40
343 344 2.504367 GAGTGCAACCCTAAGCAAAGA 58.496 47.619 0.00 0.00 43.20 2.52
344 345 1.197721 CGAGTGCAACCCTAAGCAAAG 59.802 52.381 0.00 0.00 43.20 2.77
345 346 1.202710 TCGAGTGCAACCCTAAGCAAA 60.203 47.619 0.00 0.00 43.20 3.68
346 347 0.394938 TCGAGTGCAACCCTAAGCAA 59.605 50.000 0.00 0.00 43.20 3.91
347 348 0.320421 GTCGAGTGCAACCCTAAGCA 60.320 55.000 0.00 0.00 37.80 3.91
348 349 1.352156 CGTCGAGTGCAACCCTAAGC 61.352 60.000 0.00 0.00 37.80 3.09
349 350 1.352156 GCGTCGAGTGCAACCCTAAG 61.352 60.000 0.00 0.00 37.80 2.18
350 351 1.373748 GCGTCGAGTGCAACCCTAA 60.374 57.895 0.00 0.00 37.80 2.69
351 352 2.260434 GCGTCGAGTGCAACCCTA 59.740 61.111 0.00 0.00 37.80 3.53
352 353 3.865929 CTGCGTCGAGTGCAACCCT 62.866 63.158 12.77 0.00 42.70 4.34
353 354 3.414700 CTGCGTCGAGTGCAACCC 61.415 66.667 12.77 0.00 42.70 4.11
354 355 3.414700 CCTGCGTCGAGTGCAACC 61.415 66.667 12.77 0.00 42.70 3.77
355 356 3.414700 CCCTGCGTCGAGTGCAAC 61.415 66.667 12.77 0.00 42.70 4.17
356 357 3.923864 ACCCTGCGTCGAGTGCAA 61.924 61.111 12.77 0.00 42.70 4.08
357 358 4.662961 CACCCTGCGTCGAGTGCA 62.663 66.667 11.39 11.39 40.70 4.57
358 359 2.758770 TTACACCCTGCGTCGAGTGC 62.759 60.000 0.00 2.68 33.46 4.40
359 360 0.108804 ATTACACCCTGCGTCGAGTG 60.109 55.000 0.00 0.00 36.30 3.51
360 361 0.606604 AATTACACCCTGCGTCGAGT 59.393 50.000 0.00 0.00 0.00 4.18
361 362 1.135083 AGAATTACACCCTGCGTCGAG 60.135 52.381 0.00 0.00 0.00 4.04
362 363 0.892755 AGAATTACACCCTGCGTCGA 59.107 50.000 0.00 0.00 0.00 4.20
363 364 1.722011 AAGAATTACACCCTGCGTCG 58.278 50.000 0.00 0.00 0.00 5.12
364 365 2.414161 GCAAAGAATTACACCCTGCGTC 60.414 50.000 0.00 0.00 0.00 5.19
365 366 1.539827 GCAAAGAATTACACCCTGCGT 59.460 47.619 0.00 0.00 0.00 5.24
366 367 1.135402 GGCAAAGAATTACACCCTGCG 60.135 52.381 0.00 0.00 0.00 5.18
367 368 2.094545 CAGGCAAAGAATTACACCCTGC 60.095 50.000 0.00 0.00 32.89 4.85
368 369 3.420893 TCAGGCAAAGAATTACACCCTG 58.579 45.455 0.00 0.00 39.68 4.45
369 370 3.330701 TCTCAGGCAAAGAATTACACCCT 59.669 43.478 0.00 0.00 0.00 4.34
370 371 3.686016 TCTCAGGCAAAGAATTACACCC 58.314 45.455 0.00 0.00 0.00 4.61
371 372 5.904362 AATCTCAGGCAAAGAATTACACC 57.096 39.130 0.00 0.00 0.00 4.16
372 373 7.540055 CAGAAAATCTCAGGCAAAGAATTACAC 59.460 37.037 0.00 0.00 0.00 2.90
373 374 7.309377 CCAGAAAATCTCAGGCAAAGAATTACA 60.309 37.037 0.00 0.00 0.00 2.41
374 375 7.031975 CCAGAAAATCTCAGGCAAAGAATTAC 58.968 38.462 0.00 0.00 0.00 1.89
375 376 7.161773 CCAGAAAATCTCAGGCAAAGAATTA 57.838 36.000 0.00 0.00 0.00 1.40
376 377 6.034161 CCAGAAAATCTCAGGCAAAGAATT 57.966 37.500 0.00 0.00 0.00 2.17
377 378 5.656213 CCAGAAAATCTCAGGCAAAGAAT 57.344 39.130 0.00 0.00 0.00 2.40
385 386 2.005451 CGAGTGCCAGAAAATCTCAGG 58.995 52.381 0.00 0.00 33.79 3.86
386 387 2.670414 GTCGAGTGCCAGAAAATCTCAG 59.330 50.000 0.00 0.00 0.00 3.35
387 388 2.688507 GTCGAGTGCCAGAAAATCTCA 58.311 47.619 0.00 0.00 0.00 3.27
388 389 1.656095 CGTCGAGTGCCAGAAAATCTC 59.344 52.381 0.00 0.00 0.00 2.75
389 390 1.000955 ACGTCGAGTGCCAGAAAATCT 59.999 47.619 0.00 0.00 0.00 2.40
390 391 1.429463 ACGTCGAGTGCCAGAAAATC 58.571 50.000 0.00 0.00 0.00 2.17
391 392 2.607187 CTACGTCGAGTGCCAGAAAAT 58.393 47.619 0.00 0.00 0.00 1.82
392 393 1.336517 CCTACGTCGAGTGCCAGAAAA 60.337 52.381 0.00 0.00 0.00 2.29
393 394 0.242825 CCTACGTCGAGTGCCAGAAA 59.757 55.000 0.00 0.00 0.00 2.52
394 395 1.592400 CCCTACGTCGAGTGCCAGAA 61.592 60.000 0.00 0.00 0.00 3.02
395 396 2.044555 CCCTACGTCGAGTGCCAGA 61.045 63.158 0.00 0.00 0.00 3.86
396 397 2.341101 ACCCTACGTCGAGTGCCAG 61.341 63.158 0.00 0.00 0.00 4.85
397 398 2.282674 ACCCTACGTCGAGTGCCA 60.283 61.111 0.00 0.00 0.00 4.92
398 399 1.308069 TACACCCTACGTCGAGTGCC 61.308 60.000 1.50 0.00 33.46 5.01
399 400 0.523072 TTACACCCTACGTCGAGTGC 59.477 55.000 1.50 0.00 33.46 4.40
400 401 3.128242 AGAATTACACCCTACGTCGAGTG 59.872 47.826 0.00 0.00 36.30 3.51
401 402 3.350833 AGAATTACACCCTACGTCGAGT 58.649 45.455 0.00 0.00 0.00 4.18
402 403 5.490139 TTAGAATTACACCCTACGTCGAG 57.510 43.478 0.00 0.00 0.00 4.04
403 404 6.767902 ACTATTAGAATTACACCCTACGTCGA 59.232 38.462 0.00 0.00 0.00 4.20
404 405 6.854892 CACTATTAGAATTACACCCTACGTCG 59.145 42.308 0.00 0.00 0.00 5.12
405 406 7.710896 ACACTATTAGAATTACACCCTACGTC 58.289 38.462 0.00 0.00 0.00 4.34
406 407 7.651027 ACACTATTAGAATTACACCCTACGT 57.349 36.000 0.00 0.00 0.00 3.57
407 408 9.674824 CTAACACTATTAGAATTACACCCTACG 57.325 37.037 0.00 0.00 0.00 3.51
408 409 9.473640 GCTAACACTATTAGAATTACACCCTAC 57.526 37.037 0.00 0.00 0.00 3.18
409 410 9.204337 TGCTAACACTATTAGAATTACACCCTA 57.796 33.333 0.00 0.00 0.00 3.53
410 411 7.985752 GTGCTAACACTATTAGAATTACACCCT 59.014 37.037 0.00 0.00 43.85 4.34
411 412 8.139521 GTGCTAACACTATTAGAATTACACCC 57.860 38.462 0.00 0.00 43.85 4.61
428 429 4.935205 GTGGTGAGACATATTGTGCTAACA 59.065 41.667 0.00 0.00 0.00 2.41
429 430 5.178797 AGTGGTGAGACATATTGTGCTAAC 58.821 41.667 0.00 0.00 0.00 2.34
430 431 5.420725 AGTGGTGAGACATATTGTGCTAA 57.579 39.130 0.00 0.00 0.00 3.09
431 432 5.420725 AAGTGGTGAGACATATTGTGCTA 57.579 39.130 0.00 0.00 0.00 3.49
432 433 3.988976 AGTGGTGAGACATATTGTGCT 57.011 42.857 0.00 0.00 0.00 4.40
433 434 5.376854 AAAAGTGGTGAGACATATTGTGC 57.623 39.130 0.00 0.00 0.00 4.57
434 435 7.390440 TCCTAAAAAGTGGTGAGACATATTGTG 59.610 37.037 0.00 0.00 0.00 3.33
435 436 7.458397 TCCTAAAAAGTGGTGAGACATATTGT 58.542 34.615 0.00 0.00 0.00 2.71
436 437 7.921786 TCCTAAAAAGTGGTGAGACATATTG 57.078 36.000 0.00 0.00 0.00 1.90
438 439 9.838339 CTATTCCTAAAAAGTGGTGAGACATAT 57.162 33.333 0.00 0.00 0.00 1.78
439 440 7.769044 GCTATTCCTAAAAAGTGGTGAGACATA 59.231 37.037 0.00 0.00 0.00 2.29
440 441 6.599638 GCTATTCCTAAAAAGTGGTGAGACAT 59.400 38.462 0.00 0.00 0.00 3.06
441 442 5.938125 GCTATTCCTAAAAAGTGGTGAGACA 59.062 40.000 0.00 0.00 0.00 3.41
442 443 6.174049 AGCTATTCCTAAAAAGTGGTGAGAC 58.826 40.000 0.00 0.00 0.00 3.36
443 444 6.374417 AGCTATTCCTAAAAAGTGGTGAGA 57.626 37.500 0.00 0.00 0.00 3.27
444 445 7.331791 ACTAGCTATTCCTAAAAAGTGGTGAG 58.668 38.462 0.00 0.00 0.00 3.51
445 446 7.253905 ACTAGCTATTCCTAAAAAGTGGTGA 57.746 36.000 0.00 0.00 0.00 4.02
446 447 7.923414 AACTAGCTATTCCTAAAAAGTGGTG 57.077 36.000 0.00 0.00 0.00 4.17
516 517 7.827236 ACCTTTCATGTAATTTGGATACGAGAA 59.173 33.333 0.00 0.00 42.51 2.87
552 553 7.416664 GGCATGTATGTGGTTGATAAGACAATT 60.417 37.037 0.00 0.00 32.36 2.32
554 555 5.356751 GGCATGTATGTGGTTGATAAGACAA 59.643 40.000 0.00 0.00 0.00 3.18
559 560 4.518278 AGGGCATGTATGTGGTTGATAA 57.482 40.909 0.00 0.00 0.00 1.75
565 566 4.412199 AGTGTATAAGGGCATGTATGTGGT 59.588 41.667 0.00 0.00 0.00 4.16
610 612 2.156098 GGCGGTTTCTGTACAAATCCA 58.844 47.619 0.00 0.00 0.00 3.41
611 613 1.129811 CGGCGGTTTCTGTACAAATCC 59.870 52.381 0.00 3.01 0.00 3.01
631 633 7.073883 TCTGTTATGAACGATGCTATACGTAC 58.926 38.462 0.00 0.00 41.87 3.67
635 637 8.436200 GGAATTCTGTTATGAACGATGCTATAC 58.564 37.037 5.23 0.00 0.00 1.47
786 792 4.711355 AGGGTTACATTTGTGAATGGATGG 59.289 41.667 4.39 0.00 45.56 3.51
792 798 3.505386 TGGCAGGGTTACATTTGTGAAT 58.495 40.909 0.00 0.00 0.00 2.57
794 800 2.666272 TGGCAGGGTTACATTTGTGA 57.334 45.000 0.00 0.00 0.00 3.58
833 839 0.324943 ATGAAGAAGACCCGGTGTGG 59.675 55.000 0.00 0.00 37.55 4.17
934 940 0.744414 CCGCCCGAGATTTGTGATGT 60.744 55.000 0.00 0.00 0.00 3.06
982 992 1.539560 ATGTGAGTGGCAGCGAGAGT 61.540 55.000 0.00 0.00 0.00 3.24
992 1002 2.815211 CGACCGCCATGTGAGTGG 60.815 66.667 0.00 0.00 42.35 4.00
1033 1049 3.706373 GGCGAGAACCAGCAGGGA 61.706 66.667 0.00 0.00 41.15 4.20
1340 1380 8.907222 AAACTGCATTTTCATGGAAAAAGTAT 57.093 26.923 2.57 0.00 43.32 2.12
1348 1400 6.424509 GTGAATTGAAACTGCATTTTCATGGA 59.575 34.615 26.74 16.07 43.38 3.41
1368 1421 7.524038 GCTTCGGAGATACTATTACTGGTGAAT 60.524 40.741 0.00 0.00 35.04 2.57
1369 1422 6.238953 GCTTCGGAGATACTATTACTGGTGAA 60.239 42.308 0.00 0.00 35.04 3.18
1370 1423 5.241064 GCTTCGGAGATACTATTACTGGTGA 59.759 44.000 0.00 0.00 35.04 4.02
1371 1424 5.009710 TGCTTCGGAGATACTATTACTGGTG 59.990 44.000 0.00 0.00 35.04 4.17
1372 1425 5.138276 TGCTTCGGAGATACTATTACTGGT 58.862 41.667 0.00 0.00 35.04 4.00
1373 1426 5.704888 CTGCTTCGGAGATACTATTACTGG 58.295 45.833 0.00 0.00 35.04 4.00
1374 1427 5.157781 GCTGCTTCGGAGATACTATTACTG 58.842 45.833 0.00 0.00 35.04 2.74
1375 1428 4.218852 GGCTGCTTCGGAGATACTATTACT 59.781 45.833 0.00 0.00 35.04 2.24
1376 1429 4.022242 TGGCTGCTTCGGAGATACTATTAC 60.022 45.833 0.00 0.00 35.04 1.89
1377 1430 4.149598 TGGCTGCTTCGGAGATACTATTA 58.850 43.478 0.00 0.00 35.04 0.98
1382 1435 1.576356 CTTGGCTGCTTCGGAGATAC 58.424 55.000 0.00 0.00 35.04 2.24
1383 1436 0.465705 CCTTGGCTGCTTCGGAGATA 59.534 55.000 0.00 0.00 35.04 1.98
1386 1439 0.813210 GATCCTTGGCTGCTTCGGAG 60.813 60.000 0.00 0.00 0.00 4.63
1390 1443 0.449388 CGTTGATCCTTGGCTGCTTC 59.551 55.000 0.00 0.00 0.00 3.86
1393 1446 0.379669 CATCGTTGATCCTTGGCTGC 59.620 55.000 0.00 0.00 0.00 5.25
1408 1461 3.302156 GCGTTTCCAAAACAAAACCATCG 60.302 43.478 3.72 0.00 32.90 3.84
1409 1462 3.302156 CGCGTTTCCAAAACAAAACCATC 60.302 43.478 0.00 0.00 32.90 3.51
1410 1463 2.605366 CGCGTTTCCAAAACAAAACCAT 59.395 40.909 0.00 0.00 32.90 3.55
1411 1464 1.993370 CGCGTTTCCAAAACAAAACCA 59.007 42.857 0.00 0.00 32.90 3.67
1412 1465 1.994074 ACGCGTTTCCAAAACAAAACC 59.006 42.857 5.58 0.00 32.90 3.27
1413 1466 2.781638 GCACGCGTTTCCAAAACAAAAC 60.782 45.455 10.22 0.00 33.12 2.43
1414 1467 1.390463 GCACGCGTTTCCAAAACAAAA 59.610 42.857 10.22 0.00 0.00 2.44
1501 1554 1.137825 CCGTCTTGAGCTCCTCGAC 59.862 63.158 12.15 13.26 32.35 4.20
2022 2075 1.890510 GTTGGTCAACCCGAACGCT 60.891 57.895 2.63 0.00 32.01 5.07
2226 2279 6.758254 AGAGAGAGAGAGAAAAGAAAGTTGG 58.242 40.000 0.00 0.00 0.00 3.77
2252 2305 5.642165 ACTACTGTACCAAAAGAGAGGAGA 58.358 41.667 0.00 0.00 0.00 3.71
2313 2367 0.040246 GCGCTCCTATGACGTACTCC 60.040 60.000 0.00 0.00 0.00 3.85
2314 2368 0.945813 AGCGCTCCTATGACGTACTC 59.054 55.000 2.64 0.00 0.00 2.59
2315 2369 0.945813 GAGCGCTCCTATGACGTACT 59.054 55.000 27.22 0.00 0.00 2.73
2316 2370 0.945813 AGAGCGCTCCTATGACGTAC 59.054 55.000 32.94 4.90 0.00 3.67
2330 2384 8.193250 TGCTAGTTAAAATAAAAGGTAGAGCG 57.807 34.615 0.00 0.00 0.00 5.03
2336 2390 9.268268 GCCTTTTTGCTAGTTAAAATAAAAGGT 57.732 29.630 18.99 0.00 45.90 3.50
2395 2451 6.886459 GGGCCTTGAGATATGCTTATTTATGA 59.114 38.462 0.84 0.00 0.00 2.15
2482 2538 9.452065 CATGATACATACTGTCAGTGTTAGTAC 57.548 37.037 16.03 8.02 30.47 2.73
2961 3022 3.119096 GTCCGCGCCAAGAAGACC 61.119 66.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.