Multiple sequence alignment - TraesCS6D01G092800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G092800 chr6D 100.000 2855 0 0 1 2855 58043880 58046734 0.000000e+00 5273.0
1 TraesCS6D01G092800 chr6B 97.903 1812 37 1 1 1812 130302633 130304443 0.000000e+00 3134.0
2 TraesCS6D01G092800 chr6B 80.514 739 97 20 1814 2521 130310368 130311090 9.060000e-145 523.0
3 TraesCS6D01G092800 chr7B 84.370 1785 245 15 47 1816 746156470 746154705 0.000000e+00 1720.0
4 TraesCS6D01G092800 chr2B 83.188 1838 265 27 3 1814 794377361 794379180 0.000000e+00 1642.0
5 TraesCS6D01G092800 chr2B 81.975 1853 282 36 3 1816 794547164 794545325 0.000000e+00 1524.0
6 TraesCS6D01G092800 chr2B 81.462 383 60 7 1436 1813 794594724 794595100 1.290000e-78 303.0
7 TraesCS6D01G092800 chr2B 85.281 231 34 0 1441 1671 794486522 794486752 3.680000e-59 239.0
8 TraesCS6D01G092800 chr2B 84.052 232 35 2 1441 1671 794563208 794562978 3.700000e-54 222.0
9 TraesCS6D01G092800 chr2A 82.296 1847 275 35 3 1810 763019564 763021397 0.000000e+00 1552.0
10 TraesCS6D01G092800 chr2A 86.565 1243 155 9 3 1242 762891760 762892993 0.000000e+00 1360.0
11 TraesCS6D01G092800 chr2A 85.714 231 33 0 1441 1671 762986430 762986660 7.900000e-61 244.0
12 TraesCS6D01G092800 chr2A 79.096 354 63 7 1281 1624 762738077 762738429 1.710000e-57 233.0
13 TraesCS6D01G092800 chr2D 86.127 1420 185 11 3 1418 637340542 637339131 0.000000e+00 1520.0
14 TraesCS6D01G092800 chr2D 81.400 457 68 11 1373 1816 636928966 636928514 9.730000e-95 357.0
15 TraesCS6D01G092800 chr2D 90.909 77 7 0 1619 1695 637359604 637359680 1.400000e-18 104.0
16 TraesCS6D01G092800 chr1D 84.696 1431 201 14 3 1429 455753767 455755183 0.000000e+00 1413.0
17 TraesCS6D01G092800 chr1D 96.875 32 1 0 1969 2000 52330587 52330618 1.000000e-03 54.7
18 TraesCS6D01G092800 chr1B 84.535 1429 206 11 3 1429 626091920 626093335 0.000000e+00 1400.0
19 TraesCS6D01G092800 chr1B 82.840 169 20 3 2417 2577 14186768 14186601 2.970000e-30 143.0
20 TraesCS6D01G092800 chrUn 86.334 1244 164 5 3 1245 234395402 234396640 0.000000e+00 1351.0
21 TraesCS6D01G092800 chrUn 86.334 1244 164 5 3 1245 283151422 283152660 0.000000e+00 1351.0
22 TraesCS6D01G092800 chr3D 79.310 116 14 6 2413 2518 533318241 533318356 3.950000e-09 73.1
23 TraesCS6D01G092800 chr3D 97.500 40 1 0 2479 2518 533378669 533378708 5.100000e-08 69.4
24 TraesCS6D01G092800 chr3D 97.500 40 1 0 2479 2518 533396437 533396476 5.100000e-08 69.4
25 TraesCS6D01G092800 chr5D 90.385 52 2 3 2231 2279 487600247 487600196 6.600000e-07 65.8
26 TraesCS6D01G092800 chr3A 95.000 40 2 0 2479 2518 668876594 668876633 2.370000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G092800 chr6D 58043880 58046734 2854 False 5273 5273 100.000 1 2855 1 chr6D.!!$F1 2854
1 TraesCS6D01G092800 chr6B 130302633 130304443 1810 False 3134 3134 97.903 1 1812 1 chr6B.!!$F1 1811
2 TraesCS6D01G092800 chr6B 130310368 130311090 722 False 523 523 80.514 1814 2521 1 chr6B.!!$F2 707
3 TraesCS6D01G092800 chr7B 746154705 746156470 1765 True 1720 1720 84.370 47 1816 1 chr7B.!!$R1 1769
4 TraesCS6D01G092800 chr2B 794377361 794379180 1819 False 1642 1642 83.188 3 1814 1 chr2B.!!$F1 1811
5 TraesCS6D01G092800 chr2B 794545325 794547164 1839 True 1524 1524 81.975 3 1816 1 chr2B.!!$R1 1813
6 TraesCS6D01G092800 chr2A 763019564 763021397 1833 False 1552 1552 82.296 3 1810 1 chr2A.!!$F4 1807
7 TraesCS6D01G092800 chr2A 762891760 762892993 1233 False 1360 1360 86.565 3 1242 1 chr2A.!!$F2 1239
8 TraesCS6D01G092800 chr2D 637339131 637340542 1411 True 1520 1520 86.127 3 1418 1 chr2D.!!$R2 1415
9 TraesCS6D01G092800 chr1D 455753767 455755183 1416 False 1413 1413 84.696 3 1429 1 chr1D.!!$F2 1426
10 TraesCS6D01G092800 chr1B 626091920 626093335 1415 False 1400 1400 84.535 3 1429 1 chr1B.!!$F1 1426
11 TraesCS6D01G092800 chrUn 234395402 234396640 1238 False 1351 1351 86.334 3 1245 1 chrUn.!!$F1 1242
12 TraesCS6D01G092800 chrUn 283151422 283152660 1238 False 1351 1351 86.334 3 1245 1 chrUn.!!$F2 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 500 0.687354 TGGGAGTTGAGACAAGAGCC 59.313 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2015 0.186873 ATGCAGTCCCCCATTCATCC 59.813 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.229302 ACGTGCTCTCTCTAACCTTGTC 59.771 50.000 0.00 0.00 0.00 3.18
280 281 5.244178 AGCCCGTCATATTAGAAGGTCTAAG 59.756 44.000 4.23 0.00 41.70 2.18
499 500 0.687354 TGGGAGTTGAGACAAGAGCC 59.313 55.000 0.00 0.00 0.00 4.70
563 565 8.353423 ACTTACCATTCTATTTGAAGCAATGT 57.647 30.769 0.00 0.00 38.18 2.71
590 592 2.031919 TGCGCTGTGTACCCCAAG 59.968 61.111 9.73 0.00 0.00 3.61
701 703 5.947228 TTGGCTGTCAGTATTTTGAAGAG 57.053 39.130 0.93 0.00 0.00 2.85
731 736 4.583073 GCAAGGTCCTTCTTTCAAAAGGTA 59.417 41.667 0.00 0.00 43.22 3.08
746 751 7.403312 TCAAAAGGTAAATGGTGGATATGTG 57.597 36.000 0.00 0.00 0.00 3.21
898 903 3.980646 TTGACGATTCCAACTTGTTGG 57.019 42.857 22.58 22.58 43.40 3.77
970 975 3.570125 AGGGAGAAAAGCAAGCTTTGTAC 59.430 43.478 19.59 11.31 44.50 2.90
1041 1046 4.037446 GCCTCTGTAGATGAGTTACCAGAG 59.963 50.000 7.35 7.35 35.87 3.35
1515 1559 5.417266 TCCTATCAGTCTCAAGTCTCTGTTG 59.583 44.000 0.00 0.00 0.00 3.33
1625 1669 8.791327 TGTTTTGAACTCAAGAGCATATCATA 57.209 30.769 0.00 0.00 37.15 2.15
1630 1674 5.336150 ACTCAAGAGCATATCATATCCCG 57.664 43.478 0.00 0.00 0.00 5.14
1816 1860 3.526931 TGTTAGCATCAGTACCAGCTC 57.473 47.619 2.73 0.00 38.47 4.09
1826 1870 3.510360 TCAGTACCAGCTCACCTTACTTC 59.490 47.826 0.00 0.00 0.00 3.01
1827 1871 3.258372 CAGTACCAGCTCACCTTACTTCA 59.742 47.826 0.00 0.00 0.00 3.02
1831 1875 2.061773 CAGCTCACCTTACTTCACACG 58.938 52.381 0.00 0.00 0.00 4.49
1834 1878 0.682852 TCACCTTACTTCACACGGGG 59.317 55.000 0.00 0.00 0.00 5.73
1856 1900 2.520982 CGCGGGTGAGGGATAGGA 60.521 66.667 0.00 0.00 0.00 2.94
1861 1905 2.370849 GCGGGTGAGGGATAGGATTTTA 59.629 50.000 0.00 0.00 0.00 1.52
1867 1911 5.310857 GGTGAGGGATAGGATTTTAGGATGT 59.689 44.000 0.00 0.00 0.00 3.06
1875 1919 2.092592 GGATTTTAGGATGTGACCGGGT 60.093 50.000 6.32 0.00 34.73 5.28
1889 1933 2.677003 CGGGTTGTCGGACACATGC 61.677 63.158 10.97 1.80 33.90 4.06
1890 1934 1.302511 GGGTTGTCGGACACATGCT 60.303 57.895 10.97 0.00 33.90 3.79
1893 1937 0.238289 GTTGTCGGACACATGCTTGG 59.762 55.000 10.97 0.00 33.90 3.61
1905 1964 1.135402 CATGCTTGGCCGTAAAGTTCC 60.135 52.381 0.00 0.00 0.00 3.62
1910 1969 0.766131 TGGCCGTAAAGTTCCCTTGA 59.234 50.000 0.00 0.00 0.00 3.02
1967 2026 0.538057 CGGTCCATGGATGAATGGGG 60.538 60.000 19.62 0.00 46.17 4.96
1968 2027 0.178953 GGTCCATGGATGAATGGGGG 60.179 60.000 19.62 0.00 46.17 5.40
1978 2037 0.324552 TGAATGGGGGACTGCATTGG 60.325 55.000 0.00 0.00 0.00 3.16
1982 2041 1.213619 TGGGGGACTGCATTGGATGA 61.214 55.000 0.00 0.00 0.00 2.92
1988 2047 3.196254 GGGACTGCATTGGATGACAAAAT 59.804 43.478 0.00 0.00 43.46 1.82
1990 2049 5.343249 GGACTGCATTGGATGACAAAATAC 58.657 41.667 0.00 0.00 43.46 1.89
1992 2051 4.458989 ACTGCATTGGATGACAAAATACGT 59.541 37.500 0.00 0.00 43.46 3.57
1994 2053 4.142491 TGCATTGGATGACAAAATACGTCC 60.142 41.667 0.00 0.00 43.46 4.79
1996 2055 2.623535 TGGATGACAAAATACGTCCGG 58.376 47.619 0.00 0.00 42.96 5.14
2012 2071 3.546009 GGACCATCCGATCCCGAA 58.454 61.111 0.00 0.00 38.22 4.30
2013 2072 2.058675 GGACCATCCGATCCCGAAT 58.941 57.895 0.00 0.00 38.22 3.34
2014 2073 0.320771 GGACCATCCGATCCCGAATG 60.321 60.000 0.00 0.00 38.22 2.67
2016 2075 1.070134 GACCATCCGATCCCGAATGAA 59.930 52.381 0.00 0.00 38.22 2.57
2017 2076 1.699634 ACCATCCGATCCCGAATGAAT 59.300 47.619 0.00 0.00 38.22 2.57
2018 2077 2.079158 CCATCCGATCCCGAATGAATG 58.921 52.381 0.00 0.00 38.22 2.67
2019 2078 1.466167 CATCCGATCCCGAATGAATGC 59.534 52.381 0.00 0.00 38.22 3.56
2020 2079 0.467804 TCCGATCCCGAATGAATGCA 59.532 50.000 0.00 0.00 38.22 3.96
2021 2080 1.134250 TCCGATCCCGAATGAATGCAA 60.134 47.619 0.00 0.00 38.22 4.08
2035 2094 0.598065 ATGCAAGCGGTTTGAGGTTC 59.402 50.000 8.86 0.00 39.21 3.62
2037 2096 1.574428 CAAGCGGTTTGAGGTTCCG 59.426 57.895 0.00 0.00 45.94 4.30
2043 2102 1.281656 GTTTGAGGTTCCGCGTTGG 59.718 57.895 4.92 0.00 40.09 3.77
2044 2103 1.153127 TTTGAGGTTCCGCGTTGGT 60.153 52.632 4.92 0.00 39.52 3.67
2063 2122 3.700539 TGGTGATGCCCTAATCAAACATG 59.299 43.478 0.00 0.00 38.28 3.21
2082 2141 1.683917 TGGGAACAAAAACGACCCATG 59.316 47.619 0.00 0.00 44.50 3.66
2099 2158 4.699637 CCCATGCTAAACATAGGTACGAA 58.300 43.478 0.00 0.00 36.64 3.85
2101 2160 5.007332 CCCATGCTAAACATAGGTACGAAAC 59.993 44.000 0.00 0.00 36.64 2.78
2104 2163 6.238103 CATGCTAAACATAGGTACGAAACCAG 60.238 42.308 12.98 6.06 44.02 4.00
2134 2193 6.096846 GCTAGTGAAATGGGACCATAACATTT 59.903 38.462 3.92 6.23 44.75 2.32
2138 2197 6.202516 GAAATGGGACCATAACATTTCGAA 57.797 37.500 14.38 0.00 45.72 3.71
2140 2199 6.597832 AATGGGACCATAACATTTCGAAAA 57.402 33.333 15.66 0.00 35.31 2.29
2141 2200 6.597832 ATGGGACCATAACATTTCGAAAAA 57.402 33.333 15.66 1.46 34.49 1.94
2144 2203 7.093992 TGGGACCATAACATTTCGAAAAATTC 58.906 34.615 15.66 3.38 32.69 2.17
2149 2208 7.812669 ACCATAACATTTCGAAAAATTCCACTC 59.187 33.333 15.66 0.00 32.69 3.51
2156 2215 6.374565 TTCGAAAAATTCCACTCCGTTTTA 57.625 33.333 0.00 0.00 0.00 1.52
2195 2254 2.351738 GGTGCATTTTACACAGCTCCAC 60.352 50.000 0.00 0.00 39.87 4.02
2197 2256 1.804151 GCATTTTACACAGCTCCACGA 59.196 47.619 0.00 0.00 0.00 4.35
2218 2277 7.988904 ACGAGAGTAATGCTACAGATTTTAC 57.011 36.000 0.00 0.00 46.88 2.01
2219 2278 6.691818 ACGAGAGTAATGCTACAGATTTTACG 59.308 38.462 0.00 0.00 46.88 3.18
2220 2279 6.142480 CGAGAGTAATGCTACAGATTTTACGG 59.858 42.308 0.00 0.00 0.00 4.02
2221 2280 7.108841 AGAGTAATGCTACAGATTTTACGGA 57.891 36.000 0.00 0.00 0.00 4.69
2222 2281 6.979238 AGAGTAATGCTACAGATTTTACGGAC 59.021 38.462 0.00 0.00 0.00 4.79
2225 2284 3.259064 TGCTACAGATTTTACGGACTGC 58.741 45.455 0.00 0.00 34.25 4.40
2226 2285 3.259064 GCTACAGATTTTACGGACTGCA 58.741 45.455 0.00 0.00 34.25 4.41
2227 2286 3.682858 GCTACAGATTTTACGGACTGCAA 59.317 43.478 0.00 0.00 34.25 4.08
2228 2287 4.435651 GCTACAGATTTTACGGACTGCAAC 60.436 45.833 0.00 0.00 34.25 4.17
2229 2288 3.472652 ACAGATTTTACGGACTGCAACA 58.527 40.909 0.00 0.00 34.25 3.33
2233 2301 0.878416 TTTACGGACTGCAACATGGC 59.122 50.000 0.00 0.00 0.00 4.40
2245 2313 2.031857 GCAACATGGCAATTTGTGGTTG 60.032 45.455 11.69 14.49 37.71 3.77
2265 2333 1.383523 GCTATCAGTTGGGGAAGTGC 58.616 55.000 0.00 0.00 0.00 4.40
2329 2397 3.276857 GGTATGTGAGAGACGTGGTCTA 58.723 50.000 0.00 0.00 43.53 2.59
2340 2408 3.255149 AGACGTGGTCTATAATTAGCCCG 59.745 47.826 0.00 1.01 41.51 6.13
2349 2417 7.093354 GGTCTATAATTAGCCCGTAGTAAACC 58.907 42.308 0.00 0.00 0.00 3.27
2350 2418 7.093354 GTCTATAATTAGCCCGTAGTAAACCC 58.907 42.308 0.00 0.00 0.00 4.11
2351 2419 2.896745 ATTAGCCCGTAGTAAACCCG 57.103 50.000 0.00 0.00 0.00 5.28
2352 2420 0.175531 TTAGCCCGTAGTAAACCCGC 59.824 55.000 0.00 0.00 0.00 6.13
2374 2442 4.240096 CTGGTTTAGCATTTTTGGCTCTG 58.760 43.478 0.00 0.00 42.62 3.35
2381 2449 2.929592 GCATTTTTGGCTCTGCAGGAAG 60.930 50.000 15.13 5.91 34.77 3.46
2382 2450 2.071778 TTTTTGGCTCTGCAGGAAGT 57.928 45.000 15.13 0.00 0.00 3.01
2383 2451 2.949177 TTTTGGCTCTGCAGGAAGTA 57.051 45.000 15.13 0.00 0.00 2.24
2387 2455 1.630369 TGGCTCTGCAGGAAGTAACAT 59.370 47.619 15.13 0.00 0.00 2.71
2400 2468 7.201652 GCAGGAAGTAACATCTAAATTCTCCAC 60.202 40.741 0.00 0.00 0.00 4.02
2401 2469 7.824289 CAGGAAGTAACATCTAAATTCTCCACA 59.176 37.037 0.00 0.00 0.00 4.17
2402 2470 7.824779 AGGAAGTAACATCTAAATTCTCCACAC 59.175 37.037 0.00 0.00 0.00 3.82
2405 2473 8.779354 AGTAACATCTAAATTCTCCACACTTC 57.221 34.615 0.00 0.00 0.00 3.01
2409 2477 4.906618 TCTAAATTCTCCACACTTCCACC 58.093 43.478 0.00 0.00 0.00 4.61
2427 2495 2.036475 CACCCGCTCAGAGCAAGTATAT 59.964 50.000 22.49 0.00 42.58 0.86
2428 2496 2.700897 ACCCGCTCAGAGCAAGTATATT 59.299 45.455 22.49 0.00 42.58 1.28
2429 2497 3.895656 ACCCGCTCAGAGCAAGTATATTA 59.104 43.478 22.49 0.00 42.58 0.98
2430 2498 4.021894 ACCCGCTCAGAGCAAGTATATTAG 60.022 45.833 22.49 1.63 42.58 1.73
2432 2500 4.489810 CGCTCAGAGCAAGTATATTAGGG 58.510 47.826 22.49 0.00 42.58 3.53
2433 2501 4.021894 CGCTCAGAGCAAGTATATTAGGGT 60.022 45.833 22.49 0.00 42.58 4.34
2434 2502 5.233988 GCTCAGAGCAAGTATATTAGGGTG 58.766 45.833 18.17 0.00 41.89 4.61
2435 2503 5.011125 GCTCAGAGCAAGTATATTAGGGTGA 59.989 44.000 18.17 0.00 41.89 4.02
2436 2504 6.406692 TCAGAGCAAGTATATTAGGGTGAC 57.593 41.667 0.00 0.00 0.00 3.67
2446 2514 1.952621 TTAGGGTGACTAAGCAGGCT 58.047 50.000 0.00 0.00 36.76 4.58
2450 2518 3.863086 AGGGTGACTAAGCAGGCTATAT 58.137 45.455 0.00 0.00 0.00 0.86
2453 2521 4.322349 GGGTGACTAAGCAGGCTATATGAG 60.322 50.000 0.00 0.00 0.00 2.90
2466 2534 4.443457 GGCTATATGAGTTGCCACTTCAGA 60.443 45.833 0.00 0.00 44.34 3.27
2490 2565 2.292455 TGTGATGATGTGGAGGAGAGGA 60.292 50.000 0.00 0.00 0.00 3.71
2508 2583 2.314549 AGGAGAGAGAAGATGAGTGGGT 59.685 50.000 0.00 0.00 0.00 4.51
2510 2585 3.118811 GGAGAGAGAAGATGAGTGGGTTG 60.119 52.174 0.00 0.00 0.00 3.77
2529 2604 4.773510 GTTGTAAACTTGTAGTCAGCTGC 58.226 43.478 9.47 4.26 45.32 5.25
2530 2605 4.066646 TGTAAACTTGTAGTCAGCTGCA 57.933 40.909 9.47 0.00 35.56 4.41
2531 2606 4.058124 TGTAAACTTGTAGTCAGCTGCAG 58.942 43.478 10.11 10.11 38.52 4.41
2532 2607 1.517242 AACTTGTAGTCAGCTGCAGC 58.483 50.000 31.53 31.53 38.52 5.25
2533 2608 0.394192 ACTTGTAGTCAGCTGCAGCA 59.606 50.000 38.24 18.36 45.16 4.41
2534 2609 0.795085 CTTGTAGTCAGCTGCAGCAC 59.205 55.000 38.24 28.18 45.16 4.40
2535 2610 0.945743 TTGTAGTCAGCTGCAGCACG 60.946 55.000 38.24 28.24 45.16 5.34
2536 2611 1.080501 GTAGTCAGCTGCAGCACGA 60.081 57.895 38.24 29.95 45.16 4.35
2537 2612 1.075425 GTAGTCAGCTGCAGCACGAG 61.075 60.000 38.24 24.32 45.16 4.18
2538 2613 2.825726 TAGTCAGCTGCAGCACGAGC 62.826 60.000 38.24 24.75 45.16 5.03
2555 2630 2.827604 GCTCTAGCGCACTTTGTGA 58.172 52.632 11.47 0.00 35.23 3.58
2556 2631 0.718343 GCTCTAGCGCACTTTGTGAG 59.282 55.000 11.47 7.01 35.23 3.51
2557 2632 1.670087 GCTCTAGCGCACTTTGTGAGA 60.670 52.381 11.47 0.00 35.44 3.27
2558 2633 2.257894 CTCTAGCGCACTTTGTGAGAG 58.742 52.381 11.47 4.34 35.44 3.20
2559 2634 1.067565 TCTAGCGCACTTTGTGAGAGG 60.068 52.381 11.47 0.00 35.44 3.69
2560 2635 0.966179 TAGCGCACTTTGTGAGAGGA 59.034 50.000 11.47 0.00 35.44 3.71
2561 2636 0.320247 AGCGCACTTTGTGAGAGGAG 60.320 55.000 11.47 0.00 35.44 3.69
2562 2637 0.319900 GCGCACTTTGTGAGAGGAGA 60.320 55.000 0.30 0.00 35.44 3.71
2563 2638 1.873903 GCGCACTTTGTGAGAGGAGAA 60.874 52.381 0.30 0.00 35.44 2.87
2564 2639 2.064762 CGCACTTTGTGAGAGGAGAAG 58.935 52.381 1.52 0.00 35.44 2.85
2565 2640 2.421619 GCACTTTGTGAGAGGAGAAGG 58.578 52.381 1.52 0.00 35.23 3.46
2566 2641 2.224402 GCACTTTGTGAGAGGAGAAGGT 60.224 50.000 1.52 0.00 35.23 3.50
2567 2642 3.397482 CACTTTGTGAGAGGAGAAGGTG 58.603 50.000 0.00 0.00 35.23 4.00
2568 2643 2.370189 ACTTTGTGAGAGGAGAAGGTGG 59.630 50.000 0.00 0.00 0.00 4.61
2569 2644 1.352083 TTGTGAGAGGAGAAGGTGGG 58.648 55.000 0.00 0.00 0.00 4.61
2570 2645 0.545309 TGTGAGAGGAGAAGGTGGGG 60.545 60.000 0.00 0.00 0.00 4.96
2571 2646 0.545548 GTGAGAGGAGAAGGTGGGGT 60.546 60.000 0.00 0.00 0.00 4.95
2572 2647 0.252284 TGAGAGGAGAAGGTGGGGTC 60.252 60.000 0.00 0.00 0.00 4.46
2573 2648 0.041982 GAGAGGAGAAGGTGGGGTCT 59.958 60.000 0.00 0.00 0.00 3.85
2574 2649 1.288335 GAGAGGAGAAGGTGGGGTCTA 59.712 57.143 0.00 0.00 0.00 2.59
2575 2650 1.722851 AGAGGAGAAGGTGGGGTCTAA 59.277 52.381 0.00 0.00 0.00 2.10
2576 2651 2.112190 GAGGAGAAGGTGGGGTCTAAG 58.888 57.143 0.00 0.00 0.00 2.18
2577 2652 1.205055 GGAGAAGGTGGGGTCTAAGG 58.795 60.000 0.00 0.00 0.00 2.69
2578 2653 0.542333 GAGAAGGTGGGGTCTAAGGC 59.458 60.000 0.00 0.00 0.00 4.35
2579 2654 0.119358 AGAAGGTGGGGTCTAAGGCT 59.881 55.000 0.00 0.00 0.00 4.58
2580 2655 1.365028 AGAAGGTGGGGTCTAAGGCTA 59.635 52.381 0.00 0.00 0.00 3.93
2581 2656 2.021936 AGAAGGTGGGGTCTAAGGCTAT 60.022 50.000 0.00 0.00 0.00 2.97
2582 2657 3.209152 AGAAGGTGGGGTCTAAGGCTATA 59.791 47.826 0.00 0.00 0.00 1.31
2583 2658 3.261818 AGGTGGGGTCTAAGGCTATAG 57.738 52.381 0.00 0.00 0.00 1.31
2584 2659 2.795960 AGGTGGGGTCTAAGGCTATAGA 59.204 50.000 3.21 0.00 0.00 1.98
2585 2660 3.406498 AGGTGGGGTCTAAGGCTATAGAT 59.594 47.826 3.21 0.00 34.59 1.98
2586 2661 3.515901 GGTGGGGTCTAAGGCTATAGATG 59.484 52.174 3.21 0.00 34.59 2.90
2587 2662 4.161102 GTGGGGTCTAAGGCTATAGATGT 58.839 47.826 3.21 0.00 34.59 3.06
2588 2663 4.021016 GTGGGGTCTAAGGCTATAGATGTG 60.021 50.000 3.21 0.00 34.59 3.21
2589 2664 3.515901 GGGGTCTAAGGCTATAGATGTGG 59.484 52.174 3.21 0.00 34.59 4.17
2590 2665 3.055747 GGGTCTAAGGCTATAGATGTGGC 60.056 52.174 3.21 0.00 34.59 5.01
2591 2666 3.578716 GGTCTAAGGCTATAGATGTGGCA 59.421 47.826 3.21 0.00 34.59 4.92
2592 2667 4.561105 GTCTAAGGCTATAGATGTGGCAC 58.439 47.826 11.55 11.55 34.59 5.01
2593 2668 4.039245 GTCTAAGGCTATAGATGTGGCACA 59.961 45.833 24.36 24.36 34.59 4.57
2594 2669 3.931907 AAGGCTATAGATGTGGCACAA 57.068 42.857 25.95 8.91 44.16 3.33
2595 2670 3.931907 AGGCTATAGATGTGGCACAAA 57.068 42.857 25.95 13.53 44.16 2.83
2596 2671 3.813443 AGGCTATAGATGTGGCACAAAG 58.187 45.455 25.95 16.64 44.16 2.77
2597 2672 3.455910 AGGCTATAGATGTGGCACAAAGA 59.544 43.478 25.95 12.60 44.16 2.52
2598 2673 4.103785 AGGCTATAGATGTGGCACAAAGAT 59.896 41.667 25.95 18.51 44.16 2.40
2599 2674 5.307976 AGGCTATAGATGTGGCACAAAGATA 59.692 40.000 25.95 18.63 44.16 1.98
2600 2675 5.641209 GGCTATAGATGTGGCACAAAGATAG 59.359 44.000 25.95 26.01 44.16 2.08
2601 2676 5.121454 GCTATAGATGTGGCACAAAGATAGC 59.879 44.000 32.25 32.25 44.16 2.97
2602 2677 3.354948 AGATGTGGCACAAAGATAGCA 57.645 42.857 25.95 0.00 44.16 3.49
2603 2678 3.689347 AGATGTGGCACAAAGATAGCAA 58.311 40.909 25.95 0.00 44.16 3.91
2604 2679 3.441572 AGATGTGGCACAAAGATAGCAAC 59.558 43.478 25.95 6.12 44.16 4.17
2605 2680 1.885887 TGTGGCACAAAGATAGCAACC 59.114 47.619 19.74 0.00 44.16 3.77
2606 2681 1.135689 GTGGCACAAAGATAGCAACCG 60.136 52.381 13.86 0.00 44.16 4.44
2607 2682 0.451783 GGCACAAAGATAGCAACCGG 59.548 55.000 0.00 0.00 0.00 5.28
2608 2683 0.451783 GCACAAAGATAGCAACCGGG 59.548 55.000 6.32 0.00 0.00 5.73
2609 2684 1.094785 CACAAAGATAGCAACCGGGG 58.905 55.000 6.32 0.00 0.00 5.73
2610 2685 0.988832 ACAAAGATAGCAACCGGGGA 59.011 50.000 6.32 0.00 0.00 4.81
2611 2686 1.339727 ACAAAGATAGCAACCGGGGAC 60.340 52.381 6.32 0.00 0.00 4.46
2623 2698 4.058797 GGGGACGTGAACTTGGTG 57.941 61.111 0.00 0.00 0.00 4.17
2624 2699 2.258726 GGGGACGTGAACTTGGTGC 61.259 63.158 0.00 0.00 0.00 5.01
2625 2700 1.227853 GGGACGTGAACTTGGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
2626 2701 1.228657 GGGACGTGAACTTGGTGCTC 61.229 60.000 0.00 0.00 0.00 4.26
2627 2702 0.249911 GGACGTGAACTTGGTGCTCT 60.250 55.000 0.00 0.00 0.00 4.09
2628 2703 1.583054 GACGTGAACTTGGTGCTCTT 58.417 50.000 0.00 0.00 0.00 2.85
2629 2704 1.261619 GACGTGAACTTGGTGCTCTTG 59.738 52.381 0.00 0.00 0.00 3.02
2630 2705 0.588252 CGTGAACTTGGTGCTCTTGG 59.412 55.000 0.00 0.00 0.00 3.61
2631 2706 0.954452 GTGAACTTGGTGCTCTTGGG 59.046 55.000 0.00 0.00 0.00 4.12
2632 2707 0.550914 TGAACTTGGTGCTCTTGGGT 59.449 50.000 0.00 0.00 0.00 4.51
2633 2708 0.954452 GAACTTGGTGCTCTTGGGTG 59.046 55.000 0.00 0.00 0.00 4.61
2634 2709 1.109323 AACTTGGTGCTCTTGGGTGC 61.109 55.000 0.00 0.00 0.00 5.01
2635 2710 1.228367 CTTGGTGCTCTTGGGTGCT 60.228 57.895 0.00 0.00 33.63 4.40
2636 2711 0.036732 CTTGGTGCTCTTGGGTGCTA 59.963 55.000 0.00 0.00 33.63 3.49
2637 2712 0.036732 TTGGTGCTCTTGGGTGCTAG 59.963 55.000 0.00 0.00 33.63 3.42
2638 2713 1.746991 GGTGCTCTTGGGTGCTAGC 60.747 63.158 8.10 8.10 35.51 3.42
2639 2714 2.103042 GTGCTCTTGGGTGCTAGCG 61.103 63.158 10.77 0.00 37.80 4.26
2640 2715 3.198489 GCTCTTGGGTGCTAGCGC 61.198 66.667 20.17 20.17 0.00 5.92
2641 2716 2.265739 CTCTTGGGTGCTAGCGCA 59.734 61.111 28.28 7.43 45.60 6.09
2649 2724 3.628989 TGCTAGCGCACCCTATGT 58.371 55.556 11.47 0.00 42.25 2.29
2650 2725 2.815384 TGCTAGCGCACCCTATGTA 58.185 52.632 11.47 0.00 42.25 2.29
2651 2726 0.387929 TGCTAGCGCACCCTATGTAC 59.612 55.000 11.47 0.00 42.25 2.90
2652 2727 0.387929 GCTAGCGCACCCTATGTACA 59.612 55.000 11.47 0.00 35.78 2.90
2653 2728 1.868519 GCTAGCGCACCCTATGTACAC 60.869 57.143 11.47 0.00 35.78 2.90
2654 2729 0.748450 TAGCGCACCCTATGTACACC 59.252 55.000 11.47 0.00 0.00 4.16
2655 2730 1.219664 GCGCACCCTATGTACACCA 59.780 57.895 0.30 0.00 0.00 4.17
2656 2731 0.391927 GCGCACCCTATGTACACCAA 60.392 55.000 0.30 0.00 0.00 3.67
2657 2732 1.946747 GCGCACCCTATGTACACCAAA 60.947 52.381 0.30 0.00 0.00 3.28
2658 2733 2.639065 CGCACCCTATGTACACCAAAT 58.361 47.619 0.00 0.00 0.00 2.32
2659 2734 3.799366 CGCACCCTATGTACACCAAATA 58.201 45.455 0.00 0.00 0.00 1.40
2660 2735 3.807622 CGCACCCTATGTACACCAAATAG 59.192 47.826 0.00 0.00 0.00 1.73
2661 2736 4.682320 CGCACCCTATGTACACCAAATAGT 60.682 45.833 0.00 0.00 0.00 2.12
2662 2737 5.190677 GCACCCTATGTACACCAAATAGTT 58.809 41.667 0.00 0.00 0.00 2.24
2663 2738 5.650703 GCACCCTATGTACACCAAATAGTTT 59.349 40.000 0.00 0.00 0.00 2.66
2664 2739 6.824704 GCACCCTATGTACACCAAATAGTTTA 59.175 38.462 0.00 0.00 0.00 2.01
2665 2740 7.012044 GCACCCTATGTACACCAAATAGTTTAG 59.988 40.741 0.00 0.00 0.00 1.85
2666 2741 8.044908 CACCCTATGTACACCAAATAGTTTAGT 58.955 37.037 0.00 0.00 0.00 2.24
2667 2742 9.270707 ACCCTATGTACACCAAATAGTTTAGTA 57.729 33.333 0.00 0.00 0.00 1.82
2725 2800 8.579850 TTTTGAGCCAAATATGATCAAGTACT 57.420 30.769 0.00 0.00 35.16 2.73
2726 2801 7.792374 TTGAGCCAAATATGATCAAGTACTC 57.208 36.000 0.00 1.78 32.10 2.59
2727 2802 6.888105 TGAGCCAAATATGATCAAGTACTCA 58.112 36.000 0.00 4.41 0.00 3.41
2728 2803 7.512130 TGAGCCAAATATGATCAAGTACTCAT 58.488 34.615 0.00 0.00 36.19 2.90
2729 2804 8.650490 TGAGCCAAATATGATCAAGTACTCATA 58.350 33.333 0.00 0.15 38.39 2.15
2730 2805 9.664332 GAGCCAAATATGATCAAGTACTCATAT 57.336 33.333 0.00 8.72 43.54 1.78
2742 2817 8.801882 TCAAGTACTCATATAAAAGGTTTGGG 57.198 34.615 0.00 0.00 0.00 4.12
2743 2818 7.338449 TCAAGTACTCATATAAAAGGTTTGGGC 59.662 37.037 0.00 0.00 0.00 5.36
2744 2819 6.727394 AGTACTCATATAAAAGGTTTGGGCA 58.273 36.000 0.00 0.00 0.00 5.36
2745 2820 7.179269 AGTACTCATATAAAAGGTTTGGGCAA 58.821 34.615 0.00 0.00 0.00 4.52
2746 2821 6.530019 ACTCATATAAAAGGTTTGGGCAAG 57.470 37.500 0.00 0.00 0.00 4.01
2747 2822 6.252995 ACTCATATAAAAGGTTTGGGCAAGA 58.747 36.000 0.00 0.00 0.00 3.02
2748 2823 6.723977 ACTCATATAAAAGGTTTGGGCAAGAA 59.276 34.615 0.00 0.00 0.00 2.52
2749 2824 7.234577 ACTCATATAAAAGGTTTGGGCAAGAAA 59.765 33.333 0.00 0.00 0.00 2.52
2750 2825 8.144862 TCATATAAAAGGTTTGGGCAAGAAAT 57.855 30.769 0.00 0.00 0.00 2.17
2751 2826 8.040132 TCATATAAAAGGTTTGGGCAAGAAATG 58.960 33.333 0.00 0.00 0.00 2.32
2752 2827 4.769345 AAAAGGTTTGGGCAAGAAATGA 57.231 36.364 0.00 0.00 0.00 2.57
2753 2828 4.980339 AAAGGTTTGGGCAAGAAATGAT 57.020 36.364 0.00 0.00 0.00 2.45
2754 2829 4.980339 AAGGTTTGGGCAAGAAATGATT 57.020 36.364 0.00 0.00 0.00 2.57
2755 2830 4.980339 AGGTTTGGGCAAGAAATGATTT 57.020 36.364 0.00 0.00 0.00 2.17
2756 2831 4.898320 AGGTTTGGGCAAGAAATGATTTC 58.102 39.130 9.82 9.82 39.96 2.17
2771 2846 5.859205 ATGATTTCTATTGACTTTGGGGC 57.141 39.130 0.00 0.00 0.00 5.80
2772 2847 4.671831 TGATTTCTATTGACTTTGGGGCA 58.328 39.130 0.00 0.00 0.00 5.36
2781 2856 5.878406 TTGACTTTGGGGCAAAAAGATAA 57.122 34.783 15.50 8.54 40.46 1.75
2782 2857 5.878406 TGACTTTGGGGCAAAAAGATAAA 57.122 34.783 15.50 0.00 37.91 1.40
2783 2858 5.852827 TGACTTTGGGGCAAAAAGATAAAG 58.147 37.500 15.50 0.00 37.91 1.85
2784 2859 4.641396 ACTTTGGGGCAAAAAGATAAAGC 58.359 39.130 15.50 0.00 37.91 3.51
2785 2860 4.347876 ACTTTGGGGCAAAAAGATAAAGCT 59.652 37.500 15.50 0.00 37.91 3.74
2786 2861 5.542251 ACTTTGGGGCAAAAAGATAAAGCTA 59.458 36.000 15.50 0.00 37.91 3.32
2787 2862 6.213397 ACTTTGGGGCAAAAAGATAAAGCTAT 59.787 34.615 15.50 0.00 37.91 2.97
2788 2863 5.596836 TGGGGCAAAAAGATAAAGCTATG 57.403 39.130 0.00 0.00 0.00 2.23
2789 2864 5.268387 TGGGGCAAAAAGATAAAGCTATGA 58.732 37.500 0.00 0.00 0.00 2.15
2790 2865 5.127031 TGGGGCAAAAAGATAAAGCTATGAC 59.873 40.000 0.00 0.00 0.00 3.06
2791 2866 5.273944 GGGCAAAAAGATAAAGCTATGACG 58.726 41.667 0.00 0.00 0.00 4.35
2792 2867 5.065988 GGGCAAAAAGATAAAGCTATGACGA 59.934 40.000 0.00 0.00 0.00 4.20
2793 2868 6.238759 GGGCAAAAAGATAAAGCTATGACGAT 60.239 38.462 0.00 0.00 0.00 3.73
2794 2869 7.041372 GGGCAAAAAGATAAAGCTATGACGATA 60.041 37.037 0.00 0.00 0.00 2.92
2795 2870 8.342634 GGCAAAAAGATAAAGCTATGACGATAA 58.657 33.333 0.00 0.00 0.00 1.75
2796 2871 9.884465 GCAAAAAGATAAAGCTATGACGATAAT 57.116 29.630 0.00 0.00 0.00 1.28
2838 2913 2.851263 TGCGGGGTAGCATAAATAGG 57.149 50.000 0.00 0.00 42.92 2.57
2839 2914 2.331166 TGCGGGGTAGCATAAATAGGA 58.669 47.619 0.00 0.00 42.92 2.94
2840 2915 2.301870 TGCGGGGTAGCATAAATAGGAG 59.698 50.000 0.00 0.00 42.92 3.69
2841 2916 2.302157 GCGGGGTAGCATAAATAGGAGT 59.698 50.000 0.00 0.00 37.05 3.85
2842 2917 3.512724 GCGGGGTAGCATAAATAGGAGTA 59.487 47.826 0.00 0.00 37.05 2.59
2843 2918 4.620097 GCGGGGTAGCATAAATAGGAGTAC 60.620 50.000 0.00 0.00 37.05 2.73
2844 2919 4.771054 CGGGGTAGCATAAATAGGAGTACT 59.229 45.833 0.00 0.00 0.00 2.73
2845 2920 5.245526 CGGGGTAGCATAAATAGGAGTACTT 59.754 44.000 0.00 0.00 0.00 2.24
2846 2921 6.465084 GGGGTAGCATAAATAGGAGTACTTG 58.535 44.000 0.00 0.00 0.00 3.16
2847 2922 6.042897 GGGGTAGCATAAATAGGAGTACTTGT 59.957 42.308 0.00 0.00 0.00 3.16
2848 2923 7.234166 GGGGTAGCATAAATAGGAGTACTTGTA 59.766 40.741 0.00 0.00 0.00 2.41
2849 2924 8.813951 GGGTAGCATAAATAGGAGTACTTGTAT 58.186 37.037 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.825014 ACAAGGTTAGAGAGAGCACGTTA 59.175 43.478 0.00 0.00 0.00 3.18
280 281 2.990066 ATTCCAGAAGACGTCATCCC 57.010 50.000 19.50 3.41 0.00 3.85
499 500 0.592637 TGCAGGCAAAATGTCAGTCG 59.407 50.000 0.00 0.00 0.00 4.18
590 592 5.506982 GCATGCCTTCTCAAATCTGTAATCC 60.507 44.000 6.36 0.00 0.00 3.01
701 703 2.481289 AGAAGGACCTTGCTACAAGC 57.519 50.000 12.68 0.00 42.82 4.01
746 751 3.067601 TGTCATGCAGCAAATCATGGATC 59.932 43.478 0.00 0.00 40.20 3.36
832 837 1.285280 TGACGAACATTCTGGGGGAT 58.715 50.000 0.00 0.00 0.00 3.85
834 839 1.210478 AGATGACGAACATTCTGGGGG 59.790 52.381 0.00 0.00 39.56 5.40
898 903 5.050972 GCAACTTCGTATACTTGCATAGTCC 60.051 44.000 17.88 0.00 39.09 3.85
970 975 5.407407 AGTTTAGTACACCAGTGATCCAG 57.593 43.478 4.48 0.00 0.00 3.86
1041 1046 2.436417 TGCTTCCAGTTGCCAATACTC 58.564 47.619 0.00 0.00 0.00 2.59
1630 1674 3.878778 AGTTTATGCCCTGTGAGATCAC 58.121 45.455 6.01 6.01 46.59 3.06
1816 1860 0.682852 TCCCCGTGTGAAGTAAGGTG 59.317 55.000 0.00 0.00 0.00 4.00
1852 1896 3.389983 CCCGGTCACATCCTAAAATCCTA 59.610 47.826 0.00 0.00 0.00 2.94
1856 1900 3.245122 ACAACCCGGTCACATCCTAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
1861 1905 1.677552 GACAACCCGGTCACATCCT 59.322 57.895 0.00 0.00 37.73 3.24
1875 1919 1.514678 GCCAAGCATGTGTCCGACAA 61.515 55.000 1.88 0.00 38.36 3.18
1887 1931 0.891904 GGGAACTTTACGGCCAAGCA 60.892 55.000 2.24 0.00 0.00 3.91
1889 1933 3.644861 AGGGAACTTTACGGCCAAG 57.355 52.632 2.24 0.82 37.44 3.61
1905 1964 2.351738 GCAAACCGGAGACAAATCAAGG 60.352 50.000 9.46 0.00 0.00 3.61
1910 1969 1.600023 TTCGCAAACCGGAGACAAAT 58.400 45.000 9.46 0.00 37.59 2.32
1945 2004 1.597742 CATTCATCCATGGACCGGTC 58.402 55.000 27.04 27.04 0.00 4.79
1956 2015 0.186873 ATGCAGTCCCCCATTCATCC 59.813 55.000 0.00 0.00 0.00 3.51
1957 2016 1.684983 CAATGCAGTCCCCCATTCATC 59.315 52.381 0.00 0.00 29.71 2.92
1961 2020 0.638292 ATCCAATGCAGTCCCCCATT 59.362 50.000 0.00 0.00 32.20 3.16
1967 2026 3.940209 TTTTGTCATCCAATGCAGTCC 57.060 42.857 0.00 0.00 31.81 3.85
1968 2027 5.030295 CGTATTTTGTCATCCAATGCAGTC 58.970 41.667 0.00 0.00 31.81 3.51
1978 2037 2.606272 GGTCCGGACGTATTTTGTCATC 59.394 50.000 27.68 5.71 38.10 2.92
1982 2041 2.624636 GATGGTCCGGACGTATTTTGT 58.375 47.619 27.68 7.36 0.00 2.83
1996 2055 3.217242 CATTCGGGATCGGATGGTC 57.783 57.895 0.00 0.00 45.93 4.02
2009 2068 1.650153 CAAACCGCTTGCATTCATTCG 59.350 47.619 0.00 0.00 0.00 3.34
2010 2069 2.919229 CTCAAACCGCTTGCATTCATTC 59.081 45.455 0.00 0.00 34.76 2.67
2012 2071 1.203052 CCTCAAACCGCTTGCATTCAT 59.797 47.619 0.00 0.00 34.76 2.57
2013 2072 0.597568 CCTCAAACCGCTTGCATTCA 59.402 50.000 0.00 0.00 34.76 2.57
2014 2073 0.598065 ACCTCAAACCGCTTGCATTC 59.402 50.000 0.00 0.00 34.76 2.67
2016 2075 0.598065 GAACCTCAAACCGCTTGCAT 59.402 50.000 0.00 0.00 34.76 3.96
2017 2076 1.452145 GGAACCTCAAACCGCTTGCA 61.452 55.000 0.00 0.00 34.76 4.08
2018 2077 1.285950 GGAACCTCAAACCGCTTGC 59.714 57.895 0.00 0.00 34.76 4.01
2019 2078 1.574428 CGGAACCTCAAACCGCTTG 59.426 57.895 0.00 0.00 40.19 4.01
2020 2079 4.058797 CGGAACCTCAAACCGCTT 57.941 55.556 0.00 0.00 40.19 4.68
2035 2094 3.673956 TAGGGCATCACCAACGCGG 62.674 63.158 12.47 0.00 42.05 6.46
2037 2096 0.663153 GATTAGGGCATCACCAACGC 59.337 55.000 0.00 0.00 42.05 4.84
2043 2102 3.068590 CCCATGTTTGATTAGGGCATCAC 59.931 47.826 0.00 0.00 32.68 3.06
2044 2103 3.053019 TCCCATGTTTGATTAGGGCATCA 60.053 43.478 0.00 0.00 39.42 3.07
2063 2122 1.604438 GCATGGGTCGTTTTTGTTCCC 60.604 52.381 0.00 0.00 38.68 3.97
2078 2137 5.007332 GGTTTCGTACCTATGTTTAGCATGG 59.993 44.000 0.00 0.00 44.10 3.66
2094 2153 2.309528 CTAGCATGGCTGGTTTCGTA 57.690 50.000 0.07 0.00 40.10 3.43
2101 2160 1.679680 CCATTTCACTAGCATGGCTGG 59.320 52.381 0.07 0.00 42.85 4.85
2104 2163 1.678101 GTCCCATTTCACTAGCATGGC 59.322 52.381 0.00 0.00 36.83 4.40
2134 2193 4.904253 AAAACGGAGTGGAATTTTTCGA 57.096 36.364 0.00 0.00 45.00 3.71
2138 2197 5.127356 TGGTTGTAAAACGGAGTGGAATTTT 59.873 36.000 0.00 0.00 45.00 1.82
2140 2199 4.208746 TGGTTGTAAAACGGAGTGGAATT 58.791 39.130 0.00 0.00 45.00 2.17
2141 2200 3.822940 TGGTTGTAAAACGGAGTGGAAT 58.177 40.909 0.00 0.00 45.00 3.01
2144 2203 3.128938 TGTTTGGTTGTAAAACGGAGTGG 59.871 43.478 0.00 0.00 45.00 4.00
2149 2208 3.244111 GCATGTGTTTGGTTGTAAAACGG 59.756 43.478 0.00 0.00 35.09 4.44
2156 2215 0.667993 CCGAGCATGTGTTTGGTTGT 59.332 50.000 0.00 0.00 0.00 3.32
2187 2246 1.135915 AGCATTACTCTCGTGGAGCTG 59.864 52.381 0.00 5.40 45.48 4.24
2195 2254 6.142480 CCGTAAAATCTGTAGCATTACTCTCG 59.858 42.308 0.00 0.00 0.00 4.04
2197 2256 6.979238 GTCCGTAAAATCTGTAGCATTACTCT 59.021 38.462 0.00 0.00 0.00 3.24
2211 2270 3.758300 CCATGTTGCAGTCCGTAAAATC 58.242 45.455 0.00 0.00 0.00 2.17
2213 2272 1.268352 GCCATGTTGCAGTCCGTAAAA 59.732 47.619 0.00 0.00 0.00 1.52
2214 2273 0.878416 GCCATGTTGCAGTCCGTAAA 59.122 50.000 0.00 0.00 0.00 2.01
2216 2275 0.250510 TTGCCATGTTGCAGTCCGTA 60.251 50.000 0.00 0.00 43.21 4.02
2218 2277 0.244450 AATTGCCATGTTGCAGTCCG 59.756 50.000 0.00 0.00 43.21 4.79
2219 2278 2.070783 CAAATTGCCATGTTGCAGTCC 58.929 47.619 0.00 0.00 43.21 3.85
2220 2279 2.477375 CACAAATTGCCATGTTGCAGTC 59.523 45.455 0.00 0.00 43.21 3.51
2221 2280 2.485903 CACAAATTGCCATGTTGCAGT 58.514 42.857 0.00 0.00 43.21 4.40
2222 2281 1.801771 CCACAAATTGCCATGTTGCAG 59.198 47.619 0.00 0.00 43.21 4.41
2225 2284 2.548904 CCAACCACAAATTGCCATGTTG 59.451 45.455 0.00 2.21 33.29 3.33
2226 2285 2.848691 CCAACCACAAATTGCCATGTT 58.151 42.857 0.00 0.00 0.00 2.71
2227 2286 1.542987 GCCAACCACAAATTGCCATGT 60.543 47.619 0.00 0.00 0.00 3.21
2228 2287 1.158434 GCCAACCACAAATTGCCATG 58.842 50.000 0.00 0.00 0.00 3.66
2229 2288 1.058284 AGCCAACCACAAATTGCCAT 58.942 45.000 0.00 0.00 0.00 4.40
2233 2301 4.789012 ACTGATAGCCAACCACAAATTG 57.211 40.909 0.00 0.00 0.00 2.32
2245 2313 2.019156 GCACTTCCCCAACTGATAGCC 61.019 57.143 0.00 0.00 0.00 3.93
2247 2315 2.044123 GGCACTTCCCCAACTGATAG 57.956 55.000 0.00 0.00 0.00 2.08
2277 2345 4.706962 CCCCTCCTCTAAATTTCACAAAGG 59.293 45.833 0.00 0.00 0.00 3.11
2279 2347 4.672899 CCCCCTCCTCTAAATTTCACAAA 58.327 43.478 0.00 0.00 0.00 2.83
2280 2348 4.316025 CCCCCTCCTCTAAATTTCACAA 57.684 45.455 0.00 0.00 0.00 3.33
2302 2370 4.330074 CCACGTCTCTCACATACCAAATTC 59.670 45.833 0.00 0.00 0.00 2.17
2304 2372 3.260884 ACCACGTCTCTCACATACCAAAT 59.739 43.478 0.00 0.00 0.00 2.32
2305 2373 2.631062 ACCACGTCTCTCACATACCAAA 59.369 45.455 0.00 0.00 0.00 3.28
2306 2374 2.230508 GACCACGTCTCTCACATACCAA 59.769 50.000 0.00 0.00 0.00 3.67
2307 2375 1.816835 GACCACGTCTCTCACATACCA 59.183 52.381 0.00 0.00 0.00 3.25
2308 2376 2.093106 AGACCACGTCTCTCACATACC 58.907 52.381 0.00 0.00 38.71 2.73
2329 2397 4.800582 GCGGGTTTACTACGGGCTAATTAT 60.801 45.833 0.00 0.00 0.00 1.28
2352 2420 4.240096 CAGAGCCAAAAATGCTAAACCAG 58.760 43.478 0.00 0.00 39.69 4.00
2374 2442 6.823689 TGGAGAATTTAGATGTTACTTCCTGC 59.176 38.462 0.00 0.00 0.00 4.85
2381 2449 7.606456 TGGAAGTGTGGAGAATTTAGATGTTAC 59.394 37.037 0.00 0.00 0.00 2.50
2382 2450 7.606456 GTGGAAGTGTGGAGAATTTAGATGTTA 59.394 37.037 0.00 0.00 0.00 2.41
2383 2451 6.431234 GTGGAAGTGTGGAGAATTTAGATGTT 59.569 38.462 0.00 0.00 0.00 2.71
2387 2455 4.263331 GGGTGGAAGTGTGGAGAATTTAGA 60.263 45.833 0.00 0.00 0.00 2.10
2400 2468 1.079543 CTCTGAGCGGGTGGAAGTG 60.080 63.158 0.00 0.00 0.00 3.16
2401 2469 2.948720 GCTCTGAGCGGGTGGAAGT 61.949 63.158 14.68 0.00 0.00 3.01
2402 2470 2.125350 GCTCTGAGCGGGTGGAAG 60.125 66.667 14.68 0.00 0.00 3.46
2405 2473 1.888436 TACTTGCTCTGAGCGGGTGG 61.888 60.000 26.22 16.53 46.26 4.61
2409 2477 4.489810 CCTAATATACTTGCTCTGAGCGG 58.510 47.826 23.35 19.78 46.26 5.52
2427 2495 1.952621 AGCCTGCTTAGTCACCCTAA 58.047 50.000 0.00 0.00 34.47 2.69
2428 2496 2.840640 TAGCCTGCTTAGTCACCCTA 57.159 50.000 0.00 0.00 0.00 3.53
2429 2497 2.182516 ATAGCCTGCTTAGTCACCCT 57.817 50.000 0.00 0.00 0.00 4.34
2430 2498 3.578716 TCATATAGCCTGCTTAGTCACCC 59.421 47.826 0.00 0.00 0.00 4.61
2432 2500 5.461032 ACTCATATAGCCTGCTTAGTCAC 57.539 43.478 0.00 0.00 0.00 3.67
2433 2501 5.740224 GCAACTCATATAGCCTGCTTAGTCA 60.740 44.000 0.00 0.00 35.45 3.41
2434 2502 4.688413 GCAACTCATATAGCCTGCTTAGTC 59.312 45.833 0.00 0.00 35.45 2.59
2435 2503 4.503991 GGCAACTCATATAGCCTGCTTAGT 60.504 45.833 0.00 0.00 43.70 2.24
2436 2504 3.999663 GGCAACTCATATAGCCTGCTTAG 59.000 47.826 0.00 0.00 43.70 2.18
2446 2514 7.066163 CACAAATCTGAAGTGGCAACTCATATA 59.934 37.037 0.00 0.00 34.77 0.86
2450 2518 3.316029 CACAAATCTGAAGTGGCAACTCA 59.684 43.478 0.00 0.00 34.77 3.41
2453 2521 3.988379 TCACAAATCTGAAGTGGCAAC 57.012 42.857 0.00 0.00 34.17 4.17
2461 2529 4.945543 CCTCCACATCATCACAAATCTGAA 59.054 41.667 0.00 0.00 0.00 3.02
2462 2530 4.225717 TCCTCCACATCATCACAAATCTGA 59.774 41.667 0.00 0.00 0.00 3.27
2466 2534 4.384978 CCTCTCCTCCACATCATCACAAAT 60.385 45.833 0.00 0.00 0.00 2.32
2490 2565 3.515562 ACAACCCACTCATCTTCTCTCT 58.484 45.455 0.00 0.00 0.00 3.10
2508 2583 4.447290 TGCAGCTGACTACAAGTTTACAA 58.553 39.130 20.43 0.00 0.00 2.41
2510 2585 3.120511 GCTGCAGCTGACTACAAGTTTAC 60.121 47.826 31.33 0.00 38.21 2.01
2521 2596 3.786586 GCTCGTGCTGCAGCTGAC 61.787 66.667 36.61 26.48 42.66 3.51
2531 2606 3.251043 GTGCGCTAGAGCTCGTGC 61.251 66.667 19.55 17.20 39.32 5.34
2532 2607 0.734253 AAAGTGCGCTAGAGCTCGTG 60.734 55.000 19.55 6.36 39.32 4.35
2533 2608 0.734253 CAAAGTGCGCTAGAGCTCGT 60.734 55.000 19.55 11.30 39.32 4.18
2534 2609 0.734253 ACAAAGTGCGCTAGAGCTCG 60.734 55.000 19.55 6.24 39.32 5.03
2535 2610 0.718343 CACAAAGTGCGCTAGAGCTC 59.282 55.000 19.55 15.66 39.32 4.09
2536 2611 0.318441 TCACAAAGTGCGCTAGAGCT 59.682 50.000 19.55 0.00 38.13 4.09
2537 2612 0.718343 CTCACAAAGTGCGCTAGAGC 59.282 55.000 12.00 12.00 32.98 4.09
2538 2613 2.257894 CTCTCACAAAGTGCGCTAGAG 58.742 52.381 9.73 4.81 32.98 2.43
2539 2614 1.067565 CCTCTCACAAAGTGCGCTAGA 60.068 52.381 9.73 0.00 32.98 2.43
2540 2615 1.067565 TCCTCTCACAAAGTGCGCTAG 60.068 52.381 9.73 0.00 32.98 3.42
2541 2616 0.966179 TCCTCTCACAAAGTGCGCTA 59.034 50.000 9.73 0.00 32.98 4.26
2542 2617 0.320247 CTCCTCTCACAAAGTGCGCT 60.320 55.000 9.73 0.00 32.98 5.92
2543 2618 0.319900 TCTCCTCTCACAAAGTGCGC 60.320 55.000 0.00 0.00 32.98 6.09
2544 2619 2.064762 CTTCTCCTCTCACAAAGTGCG 58.935 52.381 0.00 0.00 32.98 5.34
2545 2620 2.224402 ACCTTCTCCTCTCACAAAGTGC 60.224 50.000 0.00 0.00 32.98 4.40
2546 2621 3.397482 CACCTTCTCCTCTCACAAAGTG 58.603 50.000 0.00 0.00 34.45 3.16
2547 2622 2.370189 CCACCTTCTCCTCTCACAAAGT 59.630 50.000 0.00 0.00 0.00 2.66
2548 2623 2.289945 CCCACCTTCTCCTCTCACAAAG 60.290 54.545 0.00 0.00 0.00 2.77
2549 2624 1.699634 CCCACCTTCTCCTCTCACAAA 59.300 52.381 0.00 0.00 0.00 2.83
2550 2625 1.352083 CCCACCTTCTCCTCTCACAA 58.648 55.000 0.00 0.00 0.00 3.33
2551 2626 0.545309 CCCCACCTTCTCCTCTCACA 60.545 60.000 0.00 0.00 0.00 3.58
2552 2627 0.545548 ACCCCACCTTCTCCTCTCAC 60.546 60.000 0.00 0.00 0.00 3.51
2553 2628 0.252284 GACCCCACCTTCTCCTCTCA 60.252 60.000 0.00 0.00 0.00 3.27
2554 2629 0.041982 AGACCCCACCTTCTCCTCTC 59.958 60.000 0.00 0.00 0.00 3.20
2555 2630 1.394532 TAGACCCCACCTTCTCCTCT 58.605 55.000 0.00 0.00 0.00 3.69
2556 2631 2.112190 CTTAGACCCCACCTTCTCCTC 58.888 57.143 0.00 0.00 0.00 3.71
2557 2632 1.273896 CCTTAGACCCCACCTTCTCCT 60.274 57.143 0.00 0.00 0.00 3.69
2558 2633 1.205055 CCTTAGACCCCACCTTCTCC 58.795 60.000 0.00 0.00 0.00 3.71
2559 2634 0.542333 GCCTTAGACCCCACCTTCTC 59.458 60.000 0.00 0.00 0.00 2.87
2560 2635 0.119358 AGCCTTAGACCCCACCTTCT 59.881 55.000 0.00 0.00 0.00 2.85
2561 2636 1.875488 TAGCCTTAGACCCCACCTTC 58.125 55.000 0.00 0.00 0.00 3.46
2562 2637 2.588925 ATAGCCTTAGACCCCACCTT 57.411 50.000 0.00 0.00 0.00 3.50
2563 2638 2.795960 TCTATAGCCTTAGACCCCACCT 59.204 50.000 0.00 0.00 0.00 4.00
2564 2639 3.255634 TCTATAGCCTTAGACCCCACC 57.744 52.381 0.00 0.00 0.00 4.61
2565 2640 4.021016 CACATCTATAGCCTTAGACCCCAC 60.021 50.000 0.00 0.00 31.25 4.61
2566 2641 4.160329 CACATCTATAGCCTTAGACCCCA 58.840 47.826 0.00 0.00 31.25 4.96
2567 2642 3.515901 CCACATCTATAGCCTTAGACCCC 59.484 52.174 0.00 0.00 31.25 4.95
2568 2643 3.055747 GCCACATCTATAGCCTTAGACCC 60.056 52.174 0.00 0.00 31.25 4.46
2569 2644 3.578716 TGCCACATCTATAGCCTTAGACC 59.421 47.826 0.00 0.00 31.25 3.85
2570 2645 4.039245 TGTGCCACATCTATAGCCTTAGAC 59.961 45.833 0.00 0.00 31.25 2.59
2571 2646 4.223144 TGTGCCACATCTATAGCCTTAGA 58.777 43.478 0.00 0.00 32.94 2.10
2572 2647 4.607293 TGTGCCACATCTATAGCCTTAG 57.393 45.455 0.00 0.00 0.00 2.18
2573 2648 5.130311 TCTTTGTGCCACATCTATAGCCTTA 59.870 40.000 0.00 0.00 0.00 2.69
2574 2649 3.931907 TTGTGCCACATCTATAGCCTT 57.068 42.857 0.00 0.00 0.00 4.35
2575 2650 3.455910 TCTTTGTGCCACATCTATAGCCT 59.544 43.478 0.00 0.00 0.00 4.58
2576 2651 3.808728 TCTTTGTGCCACATCTATAGCC 58.191 45.455 0.00 0.00 0.00 3.93
2577 2652 5.121454 GCTATCTTTGTGCCACATCTATAGC 59.879 44.000 20.48 20.48 34.81 2.97
2578 2653 6.226052 TGCTATCTTTGTGCCACATCTATAG 58.774 40.000 0.00 7.32 0.00 1.31
2579 2654 6.173427 TGCTATCTTTGTGCCACATCTATA 57.827 37.500 0.00 0.00 0.00 1.31
2580 2655 5.039920 TGCTATCTTTGTGCCACATCTAT 57.960 39.130 0.00 0.00 0.00 1.98
2581 2656 4.486125 TGCTATCTTTGTGCCACATCTA 57.514 40.909 0.00 0.00 0.00 1.98
2582 2657 3.354948 TGCTATCTTTGTGCCACATCT 57.645 42.857 0.00 0.00 0.00 2.90
2583 2658 3.428045 GGTTGCTATCTTTGTGCCACATC 60.428 47.826 0.00 0.00 0.00 3.06
2584 2659 2.493278 GGTTGCTATCTTTGTGCCACAT 59.507 45.455 0.00 0.00 0.00 3.21
2585 2660 1.885887 GGTTGCTATCTTTGTGCCACA 59.114 47.619 0.00 0.00 0.00 4.17
2586 2661 1.135689 CGGTTGCTATCTTTGTGCCAC 60.136 52.381 0.00 0.00 0.00 5.01
2587 2662 1.164411 CGGTTGCTATCTTTGTGCCA 58.836 50.000 0.00 0.00 0.00 4.92
2588 2663 0.451783 CCGGTTGCTATCTTTGTGCC 59.548 55.000 0.00 0.00 0.00 5.01
2589 2664 0.451783 CCCGGTTGCTATCTTTGTGC 59.548 55.000 0.00 0.00 0.00 4.57
2590 2665 1.094785 CCCCGGTTGCTATCTTTGTG 58.905 55.000 0.00 0.00 0.00 3.33
2591 2666 0.988832 TCCCCGGTTGCTATCTTTGT 59.011 50.000 0.00 0.00 0.00 2.83
2592 2667 1.379527 GTCCCCGGTTGCTATCTTTG 58.620 55.000 0.00 0.00 0.00 2.77
2593 2668 0.107848 CGTCCCCGGTTGCTATCTTT 60.108 55.000 0.00 0.00 0.00 2.52
2594 2669 1.262640 ACGTCCCCGGTTGCTATCTT 61.263 55.000 0.00 0.00 38.78 2.40
2595 2670 1.684734 ACGTCCCCGGTTGCTATCT 60.685 57.895 0.00 0.00 38.78 1.98
2596 2671 1.520787 CACGTCCCCGGTTGCTATC 60.521 63.158 0.00 0.00 38.78 2.08
2597 2672 1.546589 TTCACGTCCCCGGTTGCTAT 61.547 55.000 0.00 0.00 38.78 2.97
2598 2673 2.208619 TTCACGTCCCCGGTTGCTA 61.209 57.895 0.00 0.00 38.78 3.49
2599 2674 3.552384 TTCACGTCCCCGGTTGCT 61.552 61.111 0.00 0.00 38.78 3.91
2600 2675 3.351416 GTTCACGTCCCCGGTTGC 61.351 66.667 0.00 0.00 38.78 4.17
2601 2676 1.227734 AAGTTCACGTCCCCGGTTG 60.228 57.895 0.00 0.00 38.78 3.77
2602 2677 1.227734 CAAGTTCACGTCCCCGGTT 60.228 57.895 0.00 0.00 38.78 4.44
2603 2678 2.424302 CAAGTTCACGTCCCCGGT 59.576 61.111 0.00 0.00 38.78 5.28
2604 2679 2.358247 CCAAGTTCACGTCCCCGG 60.358 66.667 0.00 0.00 38.78 5.73
2605 2680 1.959226 CACCAAGTTCACGTCCCCG 60.959 63.158 0.00 0.00 40.83 5.73
2606 2681 2.258726 GCACCAAGTTCACGTCCCC 61.259 63.158 0.00 0.00 0.00 4.81
2607 2682 1.227853 AGCACCAAGTTCACGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
2608 2683 0.249911 AGAGCACCAAGTTCACGTCC 60.250 55.000 0.00 0.00 0.00 4.79
2609 2684 1.261619 CAAGAGCACCAAGTTCACGTC 59.738 52.381 0.00 0.00 0.00 4.34
2610 2685 1.299541 CAAGAGCACCAAGTTCACGT 58.700 50.000 0.00 0.00 0.00 4.49
2611 2686 0.588252 CCAAGAGCACCAAGTTCACG 59.412 55.000 0.00 0.00 0.00 4.35
2612 2687 0.954452 CCCAAGAGCACCAAGTTCAC 59.046 55.000 0.00 0.00 0.00 3.18
2613 2688 0.550914 ACCCAAGAGCACCAAGTTCA 59.449 50.000 0.00 0.00 0.00 3.18
2614 2689 0.954452 CACCCAAGAGCACCAAGTTC 59.046 55.000 0.00 0.00 0.00 3.01
2615 2690 1.109323 GCACCCAAGAGCACCAAGTT 61.109 55.000 0.00 0.00 0.00 2.66
2616 2691 1.529244 GCACCCAAGAGCACCAAGT 60.529 57.895 0.00 0.00 0.00 3.16
2617 2692 0.036732 TAGCACCCAAGAGCACCAAG 59.963 55.000 0.00 0.00 31.08 3.61
2618 2693 0.036732 CTAGCACCCAAGAGCACCAA 59.963 55.000 0.00 0.00 31.08 3.67
2619 2694 1.679311 CTAGCACCCAAGAGCACCA 59.321 57.895 0.00 0.00 31.08 4.17
2620 2695 1.746991 GCTAGCACCCAAGAGCACC 60.747 63.158 10.63 0.00 34.96 5.01
2621 2696 2.103042 CGCTAGCACCCAAGAGCAC 61.103 63.158 16.45 0.00 34.49 4.40
2622 2697 2.265739 CGCTAGCACCCAAGAGCA 59.734 61.111 16.45 0.00 34.49 4.26
2623 2698 3.198489 GCGCTAGCACCCAAGAGC 61.198 66.667 16.45 3.20 44.35 4.09
2633 2708 0.387929 TGTACATAGGGTGCGCTAGC 59.612 55.000 9.73 4.06 45.41 3.42
2634 2709 1.269621 GGTGTACATAGGGTGCGCTAG 60.270 57.143 9.73 0.00 41.64 3.42
2635 2710 0.748450 GGTGTACATAGGGTGCGCTA 59.252 55.000 9.73 0.00 41.64 4.26
2636 2711 1.261938 TGGTGTACATAGGGTGCGCT 61.262 55.000 9.73 0.00 41.64 5.92
2637 2712 0.391927 TTGGTGTACATAGGGTGCGC 60.392 55.000 0.00 0.00 41.26 6.09
2638 2713 2.102070 TTTGGTGTACATAGGGTGCG 57.898 50.000 0.00 0.00 34.44 5.34
2639 2714 4.777463 ACTATTTGGTGTACATAGGGTGC 58.223 43.478 0.00 0.00 0.00 5.01
2640 2715 8.044908 ACTAAACTATTTGGTGTACATAGGGTG 58.955 37.037 0.00 0.00 32.80 4.61
2641 2716 8.154420 ACTAAACTATTTGGTGTACATAGGGT 57.846 34.615 0.00 0.00 32.80 4.34
2699 2774 9.023962 AGTACTTGATCATATTTGGCTCAAAAA 57.976 29.630 0.00 0.00 36.90 1.94
2700 2775 8.579850 AGTACTTGATCATATTTGGCTCAAAA 57.420 30.769 0.00 0.00 36.90 2.44
2701 2776 7.828717 TGAGTACTTGATCATATTTGGCTCAAA 59.171 33.333 0.00 3.33 37.75 2.69
2702 2777 7.337938 TGAGTACTTGATCATATTTGGCTCAA 58.662 34.615 0.00 0.00 0.00 3.02
2703 2778 6.888105 TGAGTACTTGATCATATTTGGCTCA 58.112 36.000 0.00 2.38 0.00 4.26
2704 2779 7.976135 ATGAGTACTTGATCATATTTGGCTC 57.024 36.000 0.00 0.00 34.42 4.70
2716 2791 9.408648 CCCAAACCTTTTATATGAGTACTTGAT 57.591 33.333 0.00 0.00 0.00 2.57
2717 2792 7.338449 GCCCAAACCTTTTATATGAGTACTTGA 59.662 37.037 0.00 0.00 0.00 3.02
2718 2793 7.122055 TGCCCAAACCTTTTATATGAGTACTTG 59.878 37.037 0.00 0.00 0.00 3.16
2719 2794 7.179269 TGCCCAAACCTTTTATATGAGTACTT 58.821 34.615 0.00 0.00 0.00 2.24
2720 2795 6.727394 TGCCCAAACCTTTTATATGAGTACT 58.273 36.000 0.00 0.00 0.00 2.73
2721 2796 7.338449 TCTTGCCCAAACCTTTTATATGAGTAC 59.662 37.037 0.00 0.00 0.00 2.73
2722 2797 7.406916 TCTTGCCCAAACCTTTTATATGAGTA 58.593 34.615 0.00 0.00 0.00 2.59
2723 2798 6.252995 TCTTGCCCAAACCTTTTATATGAGT 58.747 36.000 0.00 0.00 0.00 3.41
2724 2799 6.773976 TCTTGCCCAAACCTTTTATATGAG 57.226 37.500 0.00 0.00 0.00 2.90
2725 2800 7.546250 TTTCTTGCCCAAACCTTTTATATGA 57.454 32.000 0.00 0.00 0.00 2.15
2726 2801 8.040132 TCATTTCTTGCCCAAACCTTTTATATG 58.960 33.333 0.00 0.00 0.00 1.78
2727 2802 8.144862 TCATTTCTTGCCCAAACCTTTTATAT 57.855 30.769 0.00 0.00 0.00 0.86
2728 2803 7.546250 TCATTTCTTGCCCAAACCTTTTATA 57.454 32.000 0.00 0.00 0.00 0.98
2729 2804 6.432403 TCATTTCTTGCCCAAACCTTTTAT 57.568 33.333 0.00 0.00 0.00 1.40
2730 2805 5.878406 TCATTTCTTGCCCAAACCTTTTA 57.122 34.783 0.00 0.00 0.00 1.52
2731 2806 4.769345 TCATTTCTTGCCCAAACCTTTT 57.231 36.364 0.00 0.00 0.00 2.27
2732 2807 4.980339 ATCATTTCTTGCCCAAACCTTT 57.020 36.364 0.00 0.00 0.00 3.11
2733 2808 4.980339 AATCATTTCTTGCCCAAACCTT 57.020 36.364 0.00 0.00 0.00 3.50
2734 2809 4.898320 GAAATCATTTCTTGCCCAAACCT 58.102 39.130 2.58 0.00 36.73 3.50
2746 2821 6.758416 GCCCCAAAGTCAATAGAAATCATTTC 59.242 38.462 1.42 1.42 39.96 2.17
2747 2822 6.213195 TGCCCCAAAGTCAATAGAAATCATTT 59.787 34.615 0.00 0.00 0.00 2.32
2748 2823 5.721000 TGCCCCAAAGTCAATAGAAATCATT 59.279 36.000 0.00 0.00 0.00 2.57
2749 2824 5.271598 TGCCCCAAAGTCAATAGAAATCAT 58.728 37.500 0.00 0.00 0.00 2.45
2750 2825 4.671831 TGCCCCAAAGTCAATAGAAATCA 58.328 39.130 0.00 0.00 0.00 2.57
2751 2826 5.659440 TTGCCCCAAAGTCAATAGAAATC 57.341 39.130 0.00 0.00 0.00 2.17
2752 2827 6.432403 TTTTGCCCCAAAGTCAATAGAAAT 57.568 33.333 0.00 0.00 34.72 2.17
2753 2828 5.878406 TTTTGCCCCAAAGTCAATAGAAA 57.122 34.783 0.00 0.00 34.72 2.52
2754 2829 5.600484 TCTTTTTGCCCCAAAGTCAATAGAA 59.400 36.000 0.00 0.00 34.72 2.10
2755 2830 5.144100 TCTTTTTGCCCCAAAGTCAATAGA 58.856 37.500 0.00 0.00 34.72 1.98
2756 2831 5.467035 TCTTTTTGCCCCAAAGTCAATAG 57.533 39.130 0.00 0.00 34.72 1.73
2757 2832 7.546250 TTATCTTTTTGCCCCAAAGTCAATA 57.454 32.000 0.00 0.00 34.72 1.90
2758 2833 4.980339 ATCTTTTTGCCCCAAAGTCAAT 57.020 36.364 0.00 0.00 34.72 2.57
2759 2834 5.878406 TTATCTTTTTGCCCCAAAGTCAA 57.122 34.783 0.00 0.00 34.72 3.18
2760 2835 5.741673 GCTTTATCTTTTTGCCCCAAAGTCA 60.742 40.000 0.00 0.00 34.72 3.41
2761 2836 4.690748 GCTTTATCTTTTTGCCCCAAAGTC 59.309 41.667 0.00 0.00 34.72 3.01
2762 2837 4.347876 AGCTTTATCTTTTTGCCCCAAAGT 59.652 37.500 0.00 0.00 34.72 2.66
2763 2838 4.898320 AGCTTTATCTTTTTGCCCCAAAG 58.102 39.130 0.00 0.00 34.72 2.77
2764 2839 4.972751 AGCTTTATCTTTTTGCCCCAAA 57.027 36.364 0.00 0.00 0.00 3.28
2765 2840 5.719085 TCATAGCTTTATCTTTTTGCCCCAA 59.281 36.000 0.00 0.00 0.00 4.12
2766 2841 5.127031 GTCATAGCTTTATCTTTTTGCCCCA 59.873 40.000 0.00 0.00 0.00 4.96
2767 2842 5.592054 GTCATAGCTTTATCTTTTTGCCCC 58.408 41.667 0.00 0.00 0.00 5.80
2768 2843 5.065988 TCGTCATAGCTTTATCTTTTTGCCC 59.934 40.000 0.00 0.00 0.00 5.36
2769 2844 6.119144 TCGTCATAGCTTTATCTTTTTGCC 57.881 37.500 0.00 0.00 0.00 4.52
2770 2845 9.884465 ATTATCGTCATAGCTTTATCTTTTTGC 57.116 29.630 0.00 0.00 0.00 3.68
2815 2890 4.339814 CCTATTTATGCTACCCCGCAAAAA 59.660 41.667 0.00 0.00 44.06 1.94
2816 2891 3.886505 CCTATTTATGCTACCCCGCAAAA 59.113 43.478 0.00 0.00 44.06 2.44
2817 2892 3.136809 TCCTATTTATGCTACCCCGCAAA 59.863 43.478 0.00 0.00 44.06 3.68
2818 2893 2.706723 TCCTATTTATGCTACCCCGCAA 59.293 45.455 0.00 0.00 44.06 4.85
2819 2894 2.301870 CTCCTATTTATGCTACCCCGCA 59.698 50.000 0.00 0.00 45.10 5.69
2820 2895 2.302157 ACTCCTATTTATGCTACCCCGC 59.698 50.000 0.00 0.00 0.00 6.13
2821 2896 4.771054 AGTACTCCTATTTATGCTACCCCG 59.229 45.833 0.00 0.00 0.00 5.73
2822 2897 6.042897 ACAAGTACTCCTATTTATGCTACCCC 59.957 42.308 0.00 0.00 0.00 4.95
2823 2898 7.063934 ACAAGTACTCCTATTTATGCTACCC 57.936 40.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.